CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 410 | I410I | syn | atC | atT | 54229 | 53942 | 0.994708 | 22790-22792 | |
S | 410 | I410I | syn | atC | atA | 54229 | 287 | 0.00529237 | 22790-22792 | |
S | 410 | I410V | nonsyn | Atc | Gtc | 336 | 333 | 0.991071 | 22790-22792 | |
S | 410 | I410V | nonsyn | AtC | GtT | 336 | 2 | 0.00595238 | 22790-22792 | |
S | 410 | I410V | nonsyn | AtC | GtA | 336 | 1 | 0.00297619 | 22790-22792 | |
S | 410 | I410T | nonsyn | aTc | aCc | 35 | 28 | 0.8 | 22790-22792 | |
S | 410 | I410T | nonsyn | aTC | aCA | 35 | 5 | 0.142857 | 22790-22792 | |
S | 410 | I410T | nonsyn | aTC | aCT | 35 | 1 | 0.0285714 | 22790-22792 | |
S | 410 | I410T | nonsyn | aTC | aCG | 35 | 1 | 0.0285714 | 22790-22792 | |
S | 410 | I410del | del | ATC | --- | 20 | 20 | 1 | 22790-22792 | |
S | 410 | I410L | nonsyn | Atc | Ctc | 16 | 12 | 0.75 | 22790-22792 | |
S | 410 | I410L | nonsyn | AtC | CtT | 16 | 2 | 0.125 | 22790-22792 | |
S | 410 | I410L | nonsyn | AtC | CtG | 16 | 2 | 0.125 | 22790-22792 | |
S | 410 | I410N | nonsyn | aTc | aAc | 8 | 5 | 0.625 | 22790-22792 | |
S | 410 | I410N | nonsyn | aTC | aAT | 8 | 3 | 0.375 | 22790-22792 | |
S | 410 | I410M | nonsyn | atC | atG | 5 | 5 | 1 | 22790-22792 | |
S | 410 | I410G | nonsyn | ATc | GGc | 4 | 4 | 1 | 22790-22792 | |
S | 410 | I410del1 | del | atC | at- | 4 | 3 | 0.75 | 22790-22792 | |
S | 410 | I410del1 | del | AtC | Nt- | 4 | 1 | 0.25 | 22790-22792 | |
S | 410 | I410K | nonsyn | aTC | aAG | 2 | 2 | 1 | 22790-22792 | |
S | 410 | I410H | nonsyn | ATc | CAc | 2 | 2 | 1 | 22790-22792 | |
S | 410 | I410Q | nonsyn | ATC | CAG | 2 | 2 | 1 | 22790-22792 | |
S | 410 | I410F | nonsyn | Atc | Ttc | 2 | 2 | 1 | 22790-22792 | |
S | 410 | I410A | nonsyn | ATc | GCc | 2 | 1 | 0.5 | 22790-22792 | |
S | 410 | I410S | nonsyn | aTc | aGc | 2 | 1 | 0.5 | 22790-22792 | |
S | 410 | I410S | nonsyn | ATC | TCA | 2 | 1 | 0.5 | 22790-22792 | |
S | 410 | I410del2 | del | aTC | a-- | 2 | 1 | 0.5 | 22790-22792 | |
S | 410 | I410A | nonsyn | ATC | GCA | 2 | 1 | 0.5 | 22790-22792 | |
S | 410 | I410del2 | del | ATc | --c | 2 | 1 | 0.5 | 22790-22792 | |
S | 410 | I410D | nonsyn | ATc | GAc | 1 | 1 | 1 | 22790-22792 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 410 | I410I | atC | atT | 53942 | 54229 | All | 0.010317 |
S | 410 | I410I | atC | atA | 287 | 54229 | All | 0.000055 |
S | 410 | I410I | atC | atT | 22437 | 22437 | AY.9.2 | 0.824102 |
S | 410 | I410I | atC | atT | 14763 | 14768 | AY.9 | 0.997905 |
S | 410 | I410I | atC | atA | 5 | 14768 | AY.9 | 0.000338 |
S | 410 | I410I | atC | atT | 11720 | 11720 | AY.9.1 | 0.981246 |
S | 410 | I410I | atC | atT | 1112 | 1256 | B.1.1.7 | 0.000995 |
S | 410 | I410I | atC | atA | 144 | 1256 | B.1.1.7 | 0.000129 |
S | 410 | I410I | atC | atT | 722 | 785 | AY.106 | 0.241795 |
S | 410 | I410I | atC | atA | 63 | 785 | AY.106 | 0.021098 |
S | 410 | I410I | atC | atT | 630 | 638 | B.1.617.2 | 0.002372 |
S | 410 | I410I | atC | atA | 8 | 638 | B.1.617.2 | 0.00003 |
S | 410 | I410I | atC | atT | 506 | 506 | AY.9.2.1 | 1 |
S | 410 | I410I | atC | atT | 442 | 446 | AY.4 | 0.000688 |
S | 410 | I410I | atC | atA | 4 | 446 | AY.4 | 0.000006 |
S | 410 | I410I | atC | atT | 421 | 421 | B.1.1.374 | 1 |
S | 410 | I410V | Atc | Gtc | 333 | 336 | All | 0.000064 |
S | 410 | I410V | AtC | GtT | 2 | 336 | All | 0 |
S | 410 | I410V | AtC | GtA | 1 | 336 | All | 0 |
S | 410 | I410I | atC | atT | 109 | 110 | AY.120 | 0.004052 |
S | 410 | I410I | atC | atA | 1 | 110 | AY.120 | 0.000037 |
S | 410 | I410I | atC | atT | 109 | 109 | P.2 | 0.020343 |
S | 410 | I410I | atC | atT | 85 | 86 | AY.43 | 0.000377 |
S | 410 | I410I | atC | atA | 1 | 86 | AY.43 | 0.000004 |
S | 410 | I410I | atC | atT | 60 | 60 | AY.13 | 0.009659 |
S | 410 | I410V | Atc | Gtc | 55 | 55 | B.1.1.7 | 0.000049 |
S | 410 | I410V | Atc | Gtc | 45 | 45 | B.1.177.35 | 0.031099 |
S | 410 | I410I | atC | atT | 44 | 44 | AY.54 | 0.004195 |
S | 410 | I410I | atC | atT | 39 | 41 | B.1 | 0.000357 |
S | 410 | I410I | atC | atA | 2 | 41 | B.1 | 0.000018 |
S | 410 | I410I | atC | atT | 39 | 39 | AY.61 | 0.004086 |
S | 410 | I410I | atC | atT | 38 | 39 | B.1.160 | 0.001185 |
S | 410 | I410I | atC | atA | 1 | 39 | B.1.160 | 0.000031 |
S | 410 | I410I | atC | atT | 37 | 37 | AY.75.1 | 0.006671 |
S | 410 | I410I | atC | atT | 35 | 37 | B.1.351 | 0.00104 |
S | 410 | I410I | atC | atA | 2 | 37 | B.1.351 | 0.000059 |
S | 410 | I410T | aTc | aCc | 28 | 35 | All | 0.000005 |
S | 410 | I410T | aTC | aCA | 5 | 35 | All | 0.000001 |
S | 410 | I410T | aTC | aCG | 1 | 35 | All | 0 |
S | 410 | I410T | aTC | aCT | 1 | 35 | All | 0 |
S | 410 | I410I | atC | atT | 21 | 35 | AY.103 | 0.00013 |
S | 410 | I410I | atC | atA | 14 | 35 | AY.103 | 0.000087 |
S | 410 | I410V | Atc | Gtc | 35 | 35 | AY.44 | 0.000213 |
S | 410 | I410V | Atc | Gtc | 34 | 34 | B.1.177.42 | 0.030411 |
S | 410 | I410V | Atc | Gtc | 27 | 27 | AY.119 | 0.000953 |
S | 410 | I410I | atC | atT | 27 | 27 | B.1.427 | 0.001363 |
S | 410 | I410I | atC | atT | 26 | 26 | P.1 | 0.00041 |
S | 410 | I410I | atC | atT | 25 | 25 | AY.92 | 0.007182 |
S | 410 | I410I | atC | atT | 22 | 23 | B.1.2 | 0.000194 |
S | 410 | I410I | atC | atA | 1 | 23 | B.1.2 | 0.000009 |
S | 410 | I410del | ATC | --- | 20 | 20 | All | 0.000004 |
S | 410 | I410V | Atc | Gtc | 20 | 20 | AY.4 | 0.000031 |
S | 410 | I410I | atC | atT | 19 | 19 | D.2 | 0.001426 |
S | 410 | I410I | atC | atT | 18 | 18 | AY.71 | 0.008551 |
S | 410 | I410I | atC | atT | 17 | 17 | AY.44 | 0.000103 |
S | 410 | I410I | atC | atT | 17 | 17 | B.1.177.4 | 0.003588 |
S | 410 | I410I | atC | atT | 17 | 17 | Q.8 | 0.002803 |
S | 410 | I410L | Atc | Ctc | 12 | 16 | All | 0.000002 |
S | 410 | I410L | AtC | CtG | 2 | 16 | All | 0 |
S | 410 | I410L | AtC | CtT | 2 | 16 | All | 0 |
S | 410 | I410I | atC | atT | 15 | 15 | AY.25 | 0.00009 |
S | 410 | I410I | atC | atT | 14 | 14 | AY.46 | 0.001457 |
S | 410 | I410I | atC | atT | 9 | 14 | B.1.429 | 0.000212 |
S | 410 | I410I | atC | atA | 5 | 14 | B.1.429 | 0.000118 |
S | 410 | I410I | atC | atT | 12 | 12 | B.1.177.86 | 0.002201 |
S | 410 | I410I | atC | atT | 11 | 11 | AY.23 | 0.000767 |
S | 410 | I410V | Atc | Gtc | 11 | 11 | AY.98.1 | 0.000533 |
S | 410 | I410I | atC | atT | 11 | 11 | B.1.258.17 | 0.001144 |
S | 410 | I410V | Atc | Gtc | 11 | 11 | B.1.617.2 | 0.000041 |
S | 410 | I410I | atC | atT | 7 | 10 | AY.26 | 0.000198 |
S | 410 | I410I | atC | atA | 3 | 10 | AY.26 | 0.000085 |
S | 410 | I410I | atC | atT | 10 | 10 | AY.75 | 0.00056 |
S | 410 | I410I | atC | atA | 10 | 10 | B.1.375 | 0.008197 |
S | 410 | I410I | atC | atT | 10 | 10 | P.1.15 | 0.002323 |
S | 410 | I410I | atC | atT | 9 | 9 | B.1.1 | 0.000163 |
S | 410 | I410I | atC | atT | 9 | 9 | B.1.1.12 | 0.067164 |
S | 410 | I410I | atC | atT | 9 | 9 | B.1.177 | 0.000119 |
S | 410 | I410N | aTc | aAc | 5 | 8 | All | 0.000001 |
S | 410 | I410N | aTC | aAT | 3 | 8 | All | 0.000001 |
S | 410 | I410I | atC | atT | 8 | 8 | AY.39.1 | 0.000317 |
S | 410 | I410V | Atc | Gtc | 8 | 8 | B.1 | 0.000073 |
S | 410 | I410T | aTc | aCc | 8 | 8 | B.1.617.2 | 0.00003 |
S | 410 | I410V | Atc | Gtc | 7 | 7 | AY.43 | 0.000031 |
S | 410 | I410I | atC | atT | 6 | 7 | AY.70 | 0.001251 |
S | 410 | I410I | atC | atA | 1 | 7 | AY.70 | 0.000209 |
S | 410 | I410I | atC | atT | 7 | 7 | AY.98.1 | 0.000339 |
S | 410 | I410V | Atc | Gtc | 7 | 7 | B.1.1 | 0.000127 |
S | 410 | I410del | ATC | --- | 7 | 7 | B.1.1.7 | 0.000006 |
S | 410 | I410T | aTc | aCc | 6 | 7 | B.1.1.7 | 0.000005 |
S | 410 | I410T | aTC | aCA | 1 | 7 | B.1.1.7 | 0.000001 |
S | 410 | I410V | Atc | Gtc | 6 | 6 | AY.25 | 0.000036 |
S | 410 | I410V | Atc | Gtc | 6 | 6 | AY.3 | 0.00006 |
S | 410 | I410I | atC | atT | 6 | 6 | AY.41 | 0.001764 |
S | 410 | I410I | atC | atT | 6 | 6 | AY.42 | 0.000241 |
S | 410 | I410I | atC | atT | 6 | 6 | AY.65 | 0.003198 |
S | 410 | I410I | atC | atT | 6 | 6 | AZ.2 | 0.004926 |
S | 410 | I410I | atC | atT | 5 | 6 | B.1.36 | 0.00073 |
S | 410 | I410I | atC | atA | 1 | 6 | B.1.36 | 0.000146 |
S | 410 | I410M | atC | atG | 5 | 5 | All | 0.000001 |
S | 410 | I410I | atC | atT | 5 | 5 | AY.16 | 0.001898 |
S | 410 | I410I | atC | atT | 5 | 5 | AY.45 | 0.000608 |
S | 410 | I410I | atC | atT | 5 | 5 | AY.67 | 0.002321 |
S | 410 | I410I | atC | atT | 5 | 5 | B.1.1.192 | 0.011547 |
S | 410 | I410I | atC | atT | 5 | 5 | B.1.1.28 | 0.001556 |
S | 410 | I410I | atC | atA | 4 | 5 | B.1.336 | 0.009756 |
S | 410 | I410I | atC | atT | 1 | 5 | B.1.336 | 0.002439 |
S | 410 | I410I | atC | atT | 5 | 5 | B.1.619.1 | 0.003207 |
S | 410 | I410V | Atc | Gtc | 5 | 5 | D.2 | 0.000375 |
S | 410 | I410L | AtC | CtG | 2 | 4 | 0.111111 | |
S | 410 | I410L | Atc | Ctc | 2 | 4 | 0.111111 | |
S | 410 | I410G | ATc | GGc | 4 | 4 | All | 0.000001 |
S | 410 | I410del1 | atC | at- | 3 | 4 | All | 0.000001 |
S | 410 | I410del1 | AtC | Nt- | 1 | 4 | All | 0 |
S | 410 | I410I | atC | atT | 4 | 4 | AY.20 | 0.000155 |
S | 410 | I410V | Atc | Gtc | 4 | 4 | AY.24 | 0.001724 |
S | 410 | I410I | atC | atT | 4 | 4 | AY.33 | 0.000267 |
S | 410 | I410I | atC | atT | 4 | 4 | AY.39 | 0.000099 |
S | 410 | I410I | atC | atT | 4 | 4 | AY.4.2 | 0.000087 |
S | 410 | I410V | Atc | Gtc | 4 | 4 | AY.4.2 | 0.000087 |
S | 410 | I410I | atC | atT | 4 | 4 | AY.46.4 | 0.000658 |
S | 410 | I410I | atC | atT | 3 | 4 | AY.47 | 0.000093 |
S | 410 | I410I | atC | atA | 1 | 4 | AY.47 | 0.000031 |
S | 410 | I410I | atC | atT | 4 | 4 | AY.58 | 0.00363 |
S | 410 | I410I | atC | atT | 4 | 4 | B.1.1.462 | 0.034483 |
S | 410 | I410L | Atc | Ctc | 4 | 4 | B.1.1.7 | 0.000004 |
S | 410 | I410I | atC | atT | 4 | 4 | B.1.243 | 0.000278 |
S | 410 | I410I | atC | atT | 4 | 4 | B.1.306 | 0.022857 |
S | 410 | I410V | Atc | Gtc | 4 | 4 | B.1.429 | 0.000094 |
S | 410 | I410I | atC | atT | 4 | 4 | B.1.526 | 0.000094 |
S | 410 | I410I | atC | atT | 4 | 4 | P.1.10 | 0.001078 |
S | 410 | I410I | atC | atT | 2 | 3 | AY.114 | 0.000462 |
S | 410 | I410I | atC | atA | 1 | 3 | AY.114 | 0.000231 |
S | 410 | I410I | atC | atT | 3 | 3 | AY.118 | 0.000188 |
S | 410 | I410I | atC | atT | 3 | 3 | AY.3 | 0.00003 |
S | 410 | I410V | Atc | Gtc | 3 | 3 | AY.33 | 0.0002 |
S | 410 | I410L | Atc | Ctc | 3 | 3 | AY.4 | 0.000005 |
S | 410 | I410I | atC | atA | 2 | 3 | AY.40 | 0.001929 |
S | 410 | I410I | atC | atT | 1 | 3 | AY.40 | 0.000964 |
S | 410 | I410T | aTC | aCG | 1 | 3 | AY.44 | 0.000006 |
S | 410 | I410T | aTc | aCc | 1 | 3 | AY.44 | 0.000006 |
S | 410 | I410T | aTC | aCT | 1 | 3 | AY.44 | 0.000006 |
S | 410 | I410I | atC | atT | 3 | 3 | AY.5 | 0.000062 |
S | 410 | I410V | Atc | Gtc | 3 | 3 | AY.77 | 0.003382 |
S | 410 | I410I | atC | atT | 3 | 3 | B.1.1.134 | 0.034091 |
S | 410 | I410I | atC | atT | 3 | 3 | B.1.1.222 | 0.000612 |
S | 410 | I410I | atC | atT | 3 | 3 | B.1.1.306 | 0.001315 |
S | 410 | I410I | atC | atT | 3 | 3 | B.1.1.354 | 0.013158 |
S | 410 | I410I | atC | atT | 3 | 3 | B.1.1.519 | 0.000119 |
S | 410 | I410I | atC | atA | 3 | 3 | B.1.110.3 | 0.002155 |
S | 410 | I410I | atC | atT | 3 | 3 | B.1.558 | 0.013699 |
S | 410 | I410I | atC | atT | 3 | 3 | B.1.560 | 0.013889 |
S | 410 | I410I | atC | atT | 3 | 3 | B.1.596 | 0.000261 |
S | 410 | I410M | atC | atG | 2 | 2 | 0.111111 | |
S | 410 | I410T | aTC | aCA | 2 | 2 | 0.111111 | |
S | 410 | I410Q | ATC | CAG | 2 | 2 | 0.111111 | |
S | 410 | I410I | atC | atT | 2 | 2 | 0.111111 | |
S | 410 | I410K | aTC | aAG | 2 | 2 | 0.111111 | |
S | 410 | I410H | ATc | CAc | 2 | 2 | 0.111111 | |
S | 410 | I410N | aTc | aAc | 2 | 2 | 0.111111 | |
S | 410 | I410H | ATc | CAc | 2 | 2 | All | 0 |
S | 410 | I410Q | ATC | CAG | 2 | 2 | All | 0 |
S | 410 | I410K | aTC | aAG | 2 | 2 | All | 0 |
S | 410 | I410F | Atc | Ttc | 2 | 2 | All | 0 |
S | 410 | I410A | ATC | GCA | 1 | 2 | All | 0 |
S | 410 | I410A | ATc | GCc | 1 | 2 | All | 0 |
S | 410 | I410del2 | aTC | a-- | 1 | 2 | All | 0 |
S | 410 | I410S | ATC | TCA | 1 | 2 | All | 0 |
S | 410 | I410del2 | ATc | --c | 1 | 2 | All | 0 |
S | 410 | I410S | aTc | aGc | 1 | 2 | All | 0 |
S | 410 | I410I | atC | atT | 2 | 2 | AY.10 | 0.00106 |
S | 410 | I410I | atC | atT | 2 | 2 | AY.102 | 0.000053 |
S | 410 | I410V | Atc | Gtc | 2 | 2 | AY.103 | 0.000012 |
S | 410 | I410del1 | AtC | Nt- | 1 | 2 | AY.106 | 0.000335 |
S | 410 | I410del1 | atC | at- | 1 | 2 | AY.106 | 0.000335 |
S | 410 | I410I | atC | atT | 2 | 2 | AY.116 | 0.000574 |
S | 410 | I410I | atC | atT | 2 | 2 | AY.119 | 0.000071 |
S | 410 | I410I | atC | atT | 2 | 2 | AY.120.2 | 0.002571 |
S | 410 | I410V | Atc | Gtc | 2 | 2 | AY.29 | 0.000032 |
S | 410 | I410del | ATC | --- | 2 | 2 | AY.43 | 0.000009 |
S | 410 | I410T | aTc | aCc | 2 | 2 | AY.43 | 0.000009 |
S | 410 | I410I | atC | atT | 2 | 2 | AY.46.6 | 0.000144 |
S | 410 | I410I | atC | atT | 1 | 2 | AY.59 | 0.00053 |
S | 410 | I410I | atC | atA | 1 | 2 | AY.59 | 0.00053 |
S | 410 | I410I | atC | atT | 2 | 2 | AY.85 | 0.000854 |
S | 410 | I410I | atC | atT | 2 | 2 | B | 0.000256 |
S | 410 | I410T | aTc | aCc | 2 | 2 | B.1.1 | 0.000036 |
S | 410 | I410I | atC | atT | 2 | 2 | B.1.1.10 | 0.00223 |
S | 410 | I410V | Atc | Gtc | 2 | 2 | B.1.1.311 | 0.000716 |
S | 410 | I410V | AtC | GtA | 1 | 2 | B.1.1.326 | 0.001761 |
S | 410 | I410T | aTC | aCA | 1 | 2 | B.1.1.326 | 0.001761 |
S | 410 | I410T | aTc | aCc | 1 | 2 | B.1.1.326 | 0.001761 |
S | 410 | I410A | ATc | GCc | 1 | 2 | B.1.1.326 | 0.001761 |
S | 410 | I410A | ATC | GCA | 1 | 2 | B.1.1.326 | 0.001761 |
S | 410 | I410V | Atc | Gtc | 1 | 2 | B.1.1.326 | 0.001761 |
S | 410 | I410I | atC | atT | 2 | 2 | B.1.1.33 | 0.000842 |
S | 410 | I410I | atC | atT | 2 | 2 | B.1.1.344 | 0.021505 |
S | 410 | I410I | atC | atT | 2 | 2 | B.1.177.60 | 0.000437 |
S | 410 | I410V | Atc | Gtc | 2 | 2 | B.1.2 | 0.000018 |
S | 410 | I410I | atC | atT | 2 | 2 | B.1.210 | 0.004264 |
S | 410 | I410del | ATC | --- | 2 | 2 | B.1.258 | 0.000133 |
S | 410 | I410I | atC | atA | 1 | 2 | B.1.258 | 0.000067 |
S | 410 | I410I | atC | atT | 1 | 2 | B.1.258 | 0.000067 |
S | 410 | I410V | Atc | Gtc | 2 | 2 | B.1.351 | 0.000059 |
S | 410 | I410I | atC | atT | 2 | 2 | B.1.36.18 | 0.00084 |
S | 410 | I410I | atC | atT | 2 | 2 | B.1.36.22 | 0.002415 |
S | 410 | I410I | atC | atT | 2 | 2 | B.1.438.1 | 0.000215 |
S | 410 | I410T | aTc | aCc | 2 | 2 | B.1.525 | 0.000226 |
S | 410 | I410T | aTc | aCc | 2 | 2 | B.1.596 | 0.000174 |
S | 410 | I410I | atC | atT | 2 | 2 | B.1.617.1 | 0.000258 |
S | 410 | I410N | aTC | aAT | 1 | 2 | B.1.617.2 | 0.000004 |
S | 410 | I410N | aTc | aAc | 1 | 2 | B.1.617.2 | 0.000004 |
S | 410 | I410I | atC | atT | 2 | 2 | B.1.621 | 0.000177 |
S | 410 | I410V | Atc | Gtc | 2 | 2 | B.1.8 | 0.003945 |
S | 410 | I410L | AtC | CtT | 1 | 2 | B.1.91 | 0.002075 |
S | 410 | I410L | Atc | Ctc | 1 | 2 | B.1.91 | 0.002075 |
S | 410 | I410I | atC | atA | 1 | 2 | B.4 | 0.002208 |
S | 410 | I410I | atC | atT | 1 | 2 | B.4 | 0.002208 |
S | 410 | I410I | atC | atT | 2 | 2 | C.37 | 0.000232 |
S | 410 | I410L | AtC | CtT | 1 | 2 | P.2 | 0.000187 |
S | 410 | I410L | Atc | Ctc | 1 | 2 | P.2 | 0.000187 |
S | 410 | I410I | atC | atT | 1 | 1 | A.2.5 | 0.000499 |
S | 410 | I410I | atC | atA | 1 | 1 | AD.2 | 0.000219 |
S | 410 | I410N | aTc | aAc | 1 | 1 | AE.3 | 0.032258 |
S | 410 | I410D | ATc | GAc | 1 | 1 | All | 0 |
S | 410 | I410V | Atc | Gtc | 1 | 1 | AY.102 | 0.000027 |
S | 410 | I410del1 | atC | at- | 1 | 1 | AY.103 | 0.000006 |
S | 410 | I410T | aTc | aCc | 1 | 1 | AY.103 | 0.000006 |
S | 410 | I410V | Atc | Gtc | 1 | 1 | AY.109 | 0.00074 |
S | 410 | I410V | Atc | Gtc | 1 | 1 | AY.20 | 0.000039 |
S | 410 | I410I | atC | atT | 1 | 1 | AY.23.1 | 0.000417 |
S | 410 | I410I | atC | atT | 1 | 1 | AY.24 | 0.000431 |
S | 410 | I410M | atC | atG | 1 | 1 | AY.25 | 0.000006 |
S | 410 | I410V | Atc | Gtc | 1 | 1 | AY.26 | 0.000028 |
S | 410 | I410V | Atc | Gtc | 1 | 1 | AY.27 | 0.000065 |
S | 410 | I410I | atC | atT | 1 | 1 | AY.29 | 0.000016 |
S | 410 | I410V | Atc | Gtc | 1 | 1 | AY.30 | 0.000396 |
S | 410 | I410S | aTc | aGc | 1 | 1 | AY.30 | 0.000396 |
S | 410 | I410G | ATc | GGc | 1 | 1 | AY.30 | 0.000396 |
S | 410 | I410del | ATC | --- | 1 | 1 | AY.4 | 0.000002 |
S | 410 | I410del | ATC | --- | 1 | 1 | AY.4.5 | 0.000107 |
S | 410 | I410V | Atc | Gtc | 1 | 1 | AY.42 | 0.00004 |
S | 410 | I410G | ATc | GGc | 1 | 1 | AY.43 | 0.000004 |
S | 410 | I410S | ATC | TCA | 1 | 1 | AY.43 | 0.000004 |
S | 410 | I410I | atC | atT | 1 | 1 | AY.46.1 | 0.001027 |
S | 410 | I410V | Atc | Gtc | 1 | 1 | AY.46.6 | 0.000072 |
S | 410 | I410G | ATc | GGc | 1 | 1 | AY.5.3 | 0.000337 |
S | 410 | I410I | atC | atT | 1 | 1 | AY.53 | 0.000288 |
S | 410 | I410I | atC | atT | 1 | 1 | AY.57 | 0.000656 |
S | 410 | I410I | atC | atT | 1 | 1 | AY.60 | 0.000938 |
S | 410 | I410I | atC | atT | 1 | 1 | AY.68 | 0.000274 |
S | 410 | I410G | ATc | GGc | 1 | 1 | AY.70 | 0.000209 |
S | 410 | I410I | atC | atT | 1 | 1 | AY.74 | 0.000116 |
S | 410 | I410I | atC | atT | 1 | 1 | AY.84 | 0.000437 |
S | 410 | I410del1 | atC | at- | 1 | 1 | AY.9 | 0.000068 |
S | 410 | I410V | AtC | GtT | 1 | 1 | AY.9 | 0.000068 |
S | 410 | I410del | ATC | --- | 1 | 1 | AY.9 | 0.000068 |
S | 410 | I410V | AtC | GtT | 1 | 1 | AY.9.2 | 0.000037 |
S | 410 | I410I | atC | atT | 1 | 1 | AY.93 | 0.000273 |
S | 410 | I410I | atC | atT | 1 | 1 | AY.96 | 0.002075 |
S | 410 | I410I | atC | atT | 1 | 1 | AY.98 | 0.000079 |
S | 410 | I410I | atC | atT | 1 | 1 | AY.99 | 0.001049 |
S | 410 | I410V | Atc | Gtc | 1 | 1 | AY.99 | 0.001049 |
S | 410 | I410I | atC | atT | 1 | 1 | AY.99.2 | 0.000092 |
S | 410 | I410I | atC | atT | 1 | 1 | AZ.1 | 0.000867 |
S | 410 | I410del2 | ATc | --c | 1 | 1 | B | 0.000128 |
S | 410 | I410N | aTc | aAc | 1 | 1 | B | 0.000128 |
S | 410 | I410V | Atc | Gtc | 1 | 1 | B | 0.000128 |
S | 410 | I410del | ATC | --- | 1 | 1 | B.1 | 0.000009 |
S | 410 | I410F | Atc | Ttc | 1 | 1 | B.1 | 0.000009 |
S | 410 | I410I | atC | atT | 1 | 1 | B.1.1.174 | 0.003378 |
S | 410 | I410I | atC | atT | 1 | 1 | B.1.1.200 | 0.007463 |
S | 410 | I410del2 | aTC | a-- | 1 | 1 | B.1.1.221 | 0.010101 |
S | 410 | I410I | atC | atA | 1 | 1 | B.1.1.25 | 0.000569 |
S | 410 | I410V | Atc | Gtc | 1 | 1 | B.1.1.253 | 0.002506 |
S | 410 | I410I | atC | atT | 1 | 1 | B.1.1.279 | 0.001121 |
S | 410 | I410V | Atc | Gtc | 1 | 1 | B.1.1.284 | 0.000107 |
S | 410 | I410V | Atc | Gtc | 1 | 1 | B.1.1.289 | 0.002083 |
S | 410 | I410I | atC | atA | 1 | 1 | B.1.1.326 | 0.001761 |
S | 410 | I410I | atC | atT | 1 | 1 | B.1.1.337 | 0.003597 |
S | 410 | I410I | atC | atT | 1 | 1 | B.1.1.363 | 0.005988 |
S | 410 | I410I | atC | atT | 1 | 1 | B.1.1.37 | 0.000193 |
S | 410 | I410V | Atc | Gtc | 1 | 1 | B.1.1.397 | 0.002252 |
S | 410 | I410I | atC | atT | 1 | 1 | B.1.1.398 | 0.003226 |
S | 410 | I410I | atC | atT | 1 | 1 | B.1.1.437 | 0.010417 |
S | 410 | I410T | aTc | aCc | 1 | 1 | B.1.1.519 | 0.00004 |
S | 410 | I410I | atC | atT | 1 | 1 | B.1.1.56 | 0.017857 |
S | 410 | I410N | aTC | aAT | 1 | 1 | B.1.1.7 | 0.000001 |
S | 410 | I410M | atC | atG | 1 | 1 | B.1.1.7 | 0.000001 |
S | 410 | I410V | Atc | Gtc | 1 | 1 | B.1.126 | 0.001276 |
S | 410 | I410del | ATC | --- | 1 | 1 | B.1.160.29 | 0.004219 |
S | 410 | I410V | Atc | Gtc | 1 | 1 | B.1.177 | 0.000013 |
S | 410 | I410V | Atc | Gtc | 1 | 1 | B.1.177.21 | 0.000076 |
S | 410 | I410V | Atc | Gtc | 1 | 1 | B.1.177.45 | 0.000381 |
S | 410 | I410I | atC | atT | 1 | 1 | B.1.177.75 | 0.001041 |
S | 410 | I410I | atC | atT | 1 | 1 | B.1.177.82 | 0.000477 |
S | 410 | I410I | atC | atT | 1 | 1 | B.1.177.87 | 0.000728 |
S | 410 | I410del | ATC | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 410 | I410T | aTc | aCc | 1 | 1 | B.1.2 | 0.000009 |
S | 410 | I410I | atC | atA | 1 | 1 | B.1.206 | 0.000816 |
S | 410 | I410I | atC | atT | 1 | 1 | B.1.221 | 0.000071 |
S | 410 | I410N | aTC | aAT | 1 | 1 | B.1.258 | 0.000067 |
S | 410 | I410V | Atc | Gtc | 1 | 1 | B.1.258.17 | 0.000104 |
S | 410 | I410T | aTC | aCA | 1 | 1 | B.1.258.17 | 0.000104 |
S | 410 | I410V | Atc | Gtc | 1 | 1 | B.1.311 | 0.000275 |
S | 410 | I410I | atC | atT | 1 | 1 | B.1.333 | 0.010526 |
S | 410 | I410I | atC | atT | 1 | 1 | B.1.349 | 0.000715 |
S | 410 | I410del | ATC | --- | 1 | 1 | B.1.351 | 0.00003 |
S | 410 | I410T | aTc | aCc | 1 | 1 | B.1.351 | 0.00003 |
S | 410 | I410I | atC | atT | 1 | 1 | B.1.351.2 | 0.000303 |
S | 410 | I410V | Atc | Gtc | 1 | 1 | B.1.36 | 0.000146 |
S | 410 | I410I | atC | atT | 1 | 1 | B.1.36.29 | 0.000517 |
S | 410 | I410V | Atc | Gtc | 1 | 1 | B.1.36.39 | 0.002217 |
S | 410 | I410I | atC | atT | 1 | 1 | B.1.369 | 0.000285 |
S | 410 | I410I | atC | atT | 1 | 1 | B.1.400 | 0.000429 |
S | 410 | I410I | atC | atT | 1 | 1 | B.1.470 | 0.001404 |
S | 410 | I410I | atC | atT | 1 | 1 | B.1.497 | 0.000315 |
S | 410 | I410I | atC | atT | 1 | 1 | B.1.509 | 0.000866 |
S | 410 | I410I | atC | atT | 1 | 1 | B.1.525 | 0.000113 |
S | 410 | I410I | atC | atT | 1 | 1 | B.1.551 | 0.00129 |
S | 410 | I410I | atC | atT | 1 | 1 | B.1.568 | 0.001111 |
S | 410 | I410I | atC | atT | 1 | 1 | B.1.577 | 0.000687 |
S | 410 | I410I | atC | atT | 1 | 1 | B.1.582 | 0.000491 |
S | 410 | I410I | atC | atT | 1 | 1 | B.1.595 | 0.000261 |
S | 410 | I410I | atC | atT | 1 | 1 | B.1.595.1 | 0.005848 |
S | 410 | I410I | atC | atT | 1 | 1 | B.1.606 | 0.006024 |
S | 410 | I410V | Atc | Gtc | 1 | 1 | B.1.606 | 0.006024 |
S | 410 | I410D | ATc | GAc | 1 | 1 | B.1.617.1 | 0.000129 |
S | 410 | I410M | atC | atG | 1 | 1 | B.1.617.2 | 0.000004 |
S | 410 | I410del | ATC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
S | 410 | I410del | ATC | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 410 | I410I | atC | atA | 1 | 1 | B.1.623 | 0.000536 |
S | 410 | I410V | Atc | Gtc | 1 | 1 | B.1.637 | 0.000073 |
S | 410 | I410I | atC | atT | 1 | 1 | B.1.91 | 0.002075 |
S | 410 | I410I | atC | atT | 1 | 1 | B.35 | 0.007812 |
S | 410 | I410I | atC | atA | 1 | 1 | B.4.4 | 0.018868 |
S | 410 | I410V | Atc | Gtc | 1 | 1 | C.16 | 0.00106 |
S | 410 | I410I | atC | atT | 1 | 1 | P.1.12 | 0.000484 |
S | 410 | I410I | atC | atT | 1 | 1 | P.1.17.1 | 0.000875 |
S | 410 | I410F | Atc | Ttc | 1 | 1 | P.2 | 0.000187 |
S | 410 | I410L | Atc | Ctc | 1 | 1 | P.7 | 0.004367 |
S | 410 | I410I | atC | atA | 1 | 1 | Q.1 | 0.000126 |
S | 410 | I410I | atC | atT | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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