CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 386

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S386K386KsynaaAaaG161161122718-22720
S386K386deldelAAA---7777122718-22720
S386K386RnonsynaAaaGa1111122718-22720
S386K386del1delAaa-aa1080.822718-22720
S386K386del1delAAa-Ga1010.122718-22720
S386K386del1delAAA-NN1010.122718-22720
S386K386EnonsynAaaGaa88122718-22720
S386K386XnonsynAaaTaa44122718-22720
S386K386LnonsynAAaTTa33122718-22720
S386K386del2delaAAa--320.66666722718-22720
S386K386del2delAAa--a310.33333322718-22720
S386K386YnonsynAaATaC22122718-22720
S386K386InonsynaAaaTa22122718-22720
S386K386QnonsynAaaCaa22122718-22720
S386K386NnonsynaaAaaC210.522718-22720
S386K386TnonsynaAaaCa210.522718-22720
S386K386TnonsynaAAaCG210.522718-22720
S386K386NnonsynaaAaaT210.522718-22720

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S386K386KaaAaaG161161All0.000031
S386K386delAAA---7777All0.000015
S386K386KaaAaaG4848B.1.1.330.020202
S386K386KaaAaaG3434N.71
S386K386KaaAaaG1919AY.40.00003
S386K386delAAA---1919B.1.1.70.000017
S386K386KaaAaaG1212B.1.20.000106
S386K386RaAaaGa1111All0.000002
S386K386del1Aaa-aa810All0.000002
S386K386del1AAA-NN110All0
S386K386del1AAa-Ga110All0
S386K386KaaAaaG1010B.1.1.70.000009
S386K386EAaaGaa88All0.000002
S386K386delAAA---66AY.250.000036
S386K386delAAA---55B.10.000046
S386K386delAAA---55B.1.2580.000333
S386K386XAaaTaa44All0.000001
S386K386KaaAaaG44AY.250.000024
S386K386delAAA---44AY.40.000006
S386K386delAAA---44AY.430.000018
S386K386del1Aaa-aa44B.10.000037
S386K386KaaAaaG44B.1.1.3060.001754
S386K386LAAaTTa33All0.000001
S386K386del2aAAa--23All0
S386K386del2AAa--a13All0
S386K386KaaAaaG33AY.430.000013
S386K386YAaATaC220.111111
S386K386delAAA---220.111111
S386K386EAaaGaa220.111111
S386K386IaAaaTa22All0
S386K386YAaATaC22All0
S386K386QAaaCaa22All0
S386K386TaAAaCG12All0
S386K386NaaAaaT12All0
S386K386NaaAaaC12All0
S386K386TaAaaCa12All0
S386K386KaaAaaG22AY.1030.000012
S386K386KaaAaaG22AY.1200.000074
S386K386delAAA---22AY.4.50.000215
S386K386KaaAaaG22AY.46.30.001867
S386K386XAaaTaa22B.10.000018
S386K386KaaAaaG22B.1.10.000036
S386K386KaaAaaG22B.1.1.630.000772
S386K386RaAaaGa22B.1.1.70.000002
S386K386delAAA---22B.1.20.000018
S386K386delAAA---22B.1.617.20.000008
S386K386delAAA---22P.1.10.000635
S386K386LAAaTTa11A0.000387
S386K386TaAaaCa11A.20.000662
S386K386RaAaaGa11AE.30.032258
S386K386KaaAaaG11AY.1070.000466
S386K386delAAA---11AY.1070.000466
S386K386delAAA---11AY.1090.00074
S386K386TaAAaCG11AY.1100.000113
S386K386EAaaGaa11AY.1170.000085
S386K386delAAA---11AY.1180.000063
S386K386del1Aaa-aa11AY.1200.000037
S386K386XAaaTaa11AY.200.000039
S386K386KaaAaaG11AY.230.00007
S386K386QAaaCaa11AY.230.00007
S386K386NaaAaaT11AY.30.00001
S386K386KaaAaaG11AY.330.000067
S386K386KaaAaaG11AY.390.000025
S386K386EAaaGaa11AY.40.000002
S386K386del1Aaa-aa11AY.430.000004
S386K386RaAaaGa11AY.430.000004
S386K386KaaAaaG11AY.540.000095
S386K386delAAA---11AY.590.00053
S386K386RaAaaGa11AY.590.00053
S386K386delAAA---11AY.670.000464
S386K386KaaAaaG11AY.690.000187
S386K386delAAA---11AY.720.001361
S386K386delAAA---11AY.90.000068
S386K386KaaAaaG11AY.9.20.000037
S386K386delAAA---11AY.9.20.000037
S386K386KaaAaaG11B0.000128
S386K386EAaaGaa11B.10.000009
S386K386LAAaTTa11B.10.000009
S386K386LAAaTTa11B.1.10.000018
S386K386IaAaaTa11B.1.10.000018
S386K386delAAA---11B.1.10.000018
S386K386delAAA---11B.1.1.1370.0125
S386K386del1AAa-Ga11B.1.1.2210.010101
S386K386delAAA---11B.1.1.3150.008475
S386K386del2aAAa--11B.1.1.3180.000302
S386K386delAAA---11B.1.1.5190.00004
S386K386del2AAa--a11B.1.1.70.000001
S386K386IaAaaTa11B.1.1.70.000001
S386K386EAaaGaa11B.1.1.70.000001
S386K386KaaAaaG11B.1.110.30.000718
S386K386KaaAaaG11B.1.160.240.004425
S386K386delAAA---11B.1.160.290.004219
S386K386delAAA---11B.1.1770.000013
S386K386delAAA---11B.1.177.180.00116
S386K386RaAaaGa11B.1.20.000009
S386K386del1AAA-NN11B.1.2220.001692
S386K386KaaAaaG11B.1.2340.000132
S386K386delAAA---11B.1.2420.018868
S386K386delAAA---11B.1.3510.00003
S386K386RaAaaGa11B.1.3560.001727
S386K386RaAaaGa11B.1.360.000146
S386K386delAAA---11B.1.36.290.000517
S386K386RaAaaGa11B.1.3690.000285
S386K386EAaaGaa11B.1.4000.000429
S386K386QAaaCaa11B.1.4130.004255
S386K386RaAaaGa11B.1.4270.00005
S386K386XAaaTaa11B.1.4290.000024
S386K386delAAA---11B.1.4460.02
S386K386KaaAaaG11B.1.5090.000866
S386K386delAAA---11B.1.5260.000024
S386K386del1Aaa-aa11B.1.5460.003704
S386K386KaaAaaG11B.1.5610.000397
S386K386RaAaaGa11B.1.5750.000303
S386K386del1Aaa-aa11B.1.617.10.000129
S386K386KaaAaaG11B.1.617.20.000004
S386K386NaaAaaC11B.1.617.20.000004
S386K386delAAA---11B.1.6200.000946
S386K386delAAA---11B.1.6210.000089
S386K386EAaaGaa11B.1.6270.00202
S386K386del2aAAa--11B.340.013699
S386K386delAAA---11B.60.00091
S386K386KaaAaaG11C.320.023256
S386K386KaaAaaG11C.370.000116
S386K386KaaAaaG11P.10.000016
S386K386delAAA---11Q.20.000613