CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 384 | P384L | nonsyn | cCt | cTt | 3448 | 3448 | 1 | 22712-22714 | |
S | 384 | P384S | nonsyn | Cct | Tct | 1091 | 1090 | 0.999083 | 22712-22714 | |
S | 384 | P384S | nonsyn | CcT | TcC | 1091 | 1 | 0.00091659 | 22712-22714 | |
S | 384 | P384P | syn | ccT | ccC | 236 | 203 | 0.860169 | 22712-22714 | |
S | 384 | P384P | syn | ccT | ccG | 236 | 22 | 0.0932203 | 22712-22714 | |
S | 384 | P384P | syn | ccT | ccA | 236 | 11 | 0.0466102 | 22712-22714 | |
S | 384 | P384del | del | CCT | --- | 76 | 76 | 1 | 22712-22714 | |
S | 384 | P384R | nonsyn | cCt | cGt | 51 | 51 | 1 | 22712-22714 | |
S | 384 | P384H | nonsyn | cCt | cAt | 43 | 43 | 1 | 22712-22714 | |
S | 384 | P384T | nonsyn | Cct | Act | 30 | 30 | 1 | 22712-22714 | |
S | 384 | P384A | nonsyn | Cct | Gct | 29 | 29 | 1 | 22712-22714 | |
S | 384 | P384I | nonsyn | CCt | ATt | 7 | 7 | 1 | 22712-22714 | |
S | 384 | P384N | nonsyn | CCt | AAt | 3 | 3 | 1 | 22712-22714 | |
S | 384 | P384del1 | del | Cct | -ct | 3 | 2 | 0.666667 | 22712-22714 | |
S | 384 | P384del1 | del | ccT | cc- | 3 | 1 | 0.333333 | 22712-22714 | |
S | 384 | P384F | nonsyn | CCt | TTt | 2 | 2 | 1 | 22712-22714 | |
S | 384 | P384D | nonsyn | CCt | GAt | 2 | 2 | 1 | 22712-22714 | |
S | 384 | P384V | nonsyn | CCt | GTt | 2 | 2 | 1 | 22712-22714 | |
S | 384 | P384del2 | del | cCT | c-- | 1 | 1 | 1 | 22712-22714 | |
S | 384 | P384Q | nonsyn | cCT | cAG | 1 | 1 | 1 | 22712-22714 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 384 | P384L | cCt | cTt | 3448 | 3448 | All | 0.000659 |
S | 384 | P384S | Cct | Tct | 1090 | 1091 | All | 0.000208 |
S | 384 | P384S | CcT | TcC | 1 | 1091 | All | 0 |
S | 384 | P384L | cCt | cTt | 866 | 866 | B.1.1.7 | 0.000775 |
S | 384 | P384L | cCt | cTt | 756 | 756 | B.1.351 | 0.022473 |
S | 384 | P384S | Cct | Tct | 580 | 580 | B.1.1.7 | 0.000519 |
S | 384 | P384P | ccT | ccC | 203 | 236 | All | 0.000039 |
S | 384 | P384P | ccT | ccG | 22 | 236 | All | 0.000004 |
S | 384 | P384P | ccT | ccA | 11 | 236 | All | 0.000002 |
S | 384 | P384L | cCt | cTt | 222 | 222 | AY.4 | 0.000346 |
S | 384 | P384L | cCt | cTt | 123 | 123 | B.1.463 | 0.991935 |
S | 384 | P384L | cCt | cTt | 116 | 116 | B.1.1.265 | 0.365931 |
S | 384 | P384del | CCT | --- | 76 | 76 | All | 0.000015 |
S | 384 | P384P | ccT | ccC | 75 | 75 | B.1.1.284 | 0.008055 |
S | 384 | P384S | Cct | Tct | 74 | 74 | AY.4 | 0.000115 |
S | 384 | P384L | cCt | cTt | 71 | 71 | B.1.2 | 0.000625 |
S | 384 | P384L | cCt | cTt | 64 | 64 | B.1.617.2 | 0.000241 |
S | 384 | P384S | Cct | Tct | 62 | 63 | AY.43 | 0.000275 |
S | 384 | P384S | CcT | TcC | 1 | 63 | AY.43 | 0.000004 |
S | 384 | P384L | cCt | cTt | 63 | 63 | B.1.637 | 0.004604 |
S | 384 | P384P | ccT | ccC | 62 | 62 | AY.44 | 0.000377 |
S | 384 | P384L | cCt | cTt | 59 | 59 | AY.25 | 0.000355 |
S | 384 | P384L | cCt | cTt | 56 | 56 | AY.120 | 0.002082 |
S | 384 | P384R | cCt | cGt | 51 | 51 | All | 0.00001 |
S | 384 | P384L | cCt | cTt | 51 | 51 | AY.43 | 0.000226 |
S | 384 | P384L | cCt | cTt | 45 | 45 | B.1.1 | 0.000816 |
S | 384 | P384H | cCt | cAt | 43 | 43 | All | 0.000008 |
S | 384 | P384L | cCt | cTt | 41 | 41 | AD.1 | 0.168724 |
S | 384 | P384L | cCt | cTt | 41 | 41 | B.1 | 0.000376 |
S | 384 | P384S | Cct | Tct | 39 | 39 | B.1.526 | 0.000917 |
S | 384 | P384L | cCt | cTt | 38 | 38 | B.1.429 | 0.000894 |
S | 384 | P384R | cCt | cGt | 34 | 34 | B.1.422 | 0.02762 |
S | 384 | P384L | cCt | cTt | 34 | 34 | B.1.567 | 0.113333 |
S | 384 | P384P | ccT | ccG | 18 | 31 | B.1.1.7 | 0.000016 |
S | 384 | P384P | ccT | ccC | 9 | 31 | B.1.1.7 | 0.000008 |
S | 384 | P384P | ccT | ccA | 4 | 31 | B.1.1.7 | 0.000004 |
S | 384 | P384T | Cct | Act | 30 | 30 | All | 0.000006 |
S | 384 | P384A | Cct | Gct | 29 | 29 | All | 0.000006 |
S | 384 | P384L | cCt | cTt | 26 | 26 | P.1 | 0.00041 |
S | 384 | P384L | cCt | cTt | 25 | 25 | B.1.570 | 0.073529 |
S | 384 | P384L | cCt | cTt | 24 | 24 | C.37 | 0.002786 |
S | 384 | P384L | cCt | cTt | 22 | 22 | B.1.526 | 0.000517 |
S | 384 | P384L | cCt | cTt | 22 | 22 | C.1.2 | 0.093617 |
S | 384 | P384L | cCt | cTt | 21 | 21 | AY.103 | 0.00013 |
S | 384 | P384L | cCt | cTt | 20 | 20 | AY.44 | 0.000122 |
S | 384 | P384del | CCT | --- | 20 | 20 | B.1.1.7 | 0.000018 |
S | 384 | P384L | cCt | cTt | 19 | 19 | AY.102 | 0.000504 |
S | 384 | P384L | cCt | cTt | 18 | 18 | AY.4.5 | 0.001935 |
S | 384 | P384S | Cct | Tct | 18 | 18 | B.1.617.2 | 0.000068 |
S | 384 | P384L | cCt | cTt | 16 | 16 | B.1.36.38 | 0.026273 |
S | 384 | P384L | cCt | cTt | 15 | 15 | AY.98.1 | 0.000726 |
S | 384 | P384S | Cct | Tct | 15 | 15 | B.1.160 | 0.000468 |
S | 384 | P384S | Cct | Tct | 15 | 15 | B.1.2 | 0.000132 |
S | 384 | P384H | cCt | cAt | 14 | 14 | AY.113 | 0.001993 |
S | 384 | P384S | Cct | Tct | 14 | 14 | AY.44 | 0.000085 |
S | 384 | P384A | Cct | Gct | 13 | 13 | AY.4 | 0.00002 |
S | 384 | P384L | cCt | cTt | 13 | 13 | AY.9.2 | 0.000477 |
S | 384 | P384L | cCt | cTt | 13 | 13 | B.1.177 | 0.000171 |
S | 384 | P384L | cCt | cTt | 12 | 12 | AY.3 | 0.000119 |
S | 384 | P384L | cCt | cTt | 12 | 12 | B.1.1.369 | 0.005355 |
S | 384 | P384L | cCt | cTt | 12 | 12 | B.1.258 | 0.000799 |
S | 384 | P384L | cCt | cTt | 12 | 12 | B.1.369 | 0.003423 |
S | 384 | P384L | cCt | cTt | 11 | 11 | AY.26 | 0.000311 |
S | 384 | P384L | cCt | cTt | 11 | 11 | B.1.1.519 | 0.000437 |
S | 384 | P384S | Cct | Tct | 10 | 10 | AY.103 | 0.000062 |
S | 384 | P384L | cCt | cTt | 10 | 10 | AY.29 | 0.000158 |
S | 384 | P384S | Cct | Tct | 10 | 10 | AY.3 | 0.000099 |
S | 384 | P384L | cCt | cTt | 10 | 10 | AY.47 | 0.000311 |
S | 384 | P384S | Cct | Tct | 10 | 10 | B.1 | 0.000092 |
S | 384 | P384L | cCt | cTt | 10 | 10 | B.1.311 | 0.002746 |
S | 384 | P384L | cCt | cTt | 10 | 10 | P.1.14 | 0.000478 |
S | 384 | P384S | Cct | Tct | 10 | 10 | P.1.14 | 0.000478 |
S | 384 | P384L | cCt | cTt | 9 | 9 | AY.46 | 0.000937 |
S | 384 | P384L | cCt | cTt | 9 | 9 | AY.5 | 0.000186 |
S | 384 | P384L | cCt | cTt | 9 | 9 | B.1.36.17 | 0.004447 |
S | 384 | P384L | cCt | cTt | 9 | 9 | B.1.36.26 | 0.025714 |
S | 384 | P384L | cCt | cTt | 9 | 9 | B.1.596 | 0.000784 |
S | 384 | P384T | Cct | Act | 9 | 9 | B.1.617.2 | 0.000034 |
S | 384 | P384L | cCt | cTt | 9 | 9 | B.1.621 | 0.000797 |
S | 384 | P384L | cCt | cTt | 8 | 8 | AY.110 | 0.000902 |
S | 384 | P384S | Cct | Tct | 8 | 8 | AY.29 | 0.000126 |
S | 384 | P384P | ccT | ccC | 8 | 8 | AY.98.1 | 0.000387 |
S | 384 | P384L | cCt | cTt | 8 | 8 | B.1.160 | 0.00025 |
S | 384 | P384S | Cct | Tct | 8 | 8 | B.1.177 | 0.000105 |
S | 384 | P384L | cCt | cTt | 8 | 8 | B.1.324 | 0.012841 |
S | 384 | P384L | cCt | cTt | 8 | 8 | B.1.525 | 0.000905 |
S | 384 | P384L | cCt | cTt | 8 | 8 | C.36 | 0.007286 |
S | 384 | P384I | CCt | ATt | 7 | 7 | All | 0.000001 |
S | 384 | P384del | CCT | --- | 7 | 7 | AY.25 | 0.000042 |
S | 384 | P384S | Cct | Tct | 7 | 7 | AY.25 | 0.000042 |
S | 384 | P384S | Cct | Tct | 7 | 7 | AY.6 | 0.000288 |
S | 384 | P384L | cCt | cTt | 7 | 7 | B.1.1.222 | 0.001428 |
S | 384 | P384L | cCt | cTt | 7 | 7 | B.1.1.368 | 0.021605 |
S | 384 | P384S | Cct | Tct | 7 | 7 | B.1.177.4 | 0.001477 |
S | 384 | P384L | cCt | cTt | 7 | 7 | B.1.36.29 | 0.003621 |
S | 384 | P384P | ccT | ccC | 7 | 7 | B.1.617.2 | 0.000026 |
S | 384 | P384L | cCt | cTt | 7 | 7 | B.1.638 | 0.368421 |
S | 384 | P384L | cCt | cTt | 6 | 6 | AY.20 | 0.000233 |
S | 384 | P384L | cCt | cTt | 6 | 6 | AY.39 | 0.000148 |
S | 384 | P384S | Cct | Tct | 6 | 6 | B.1.1 | 0.000109 |
S | 384 | P384L | cCt | cTt | 6 | 6 | B.1.1.297 | 0.013423 |
S | 384 | P384L | cCt | cTt | 6 | 6 | B.1.1.306 | 0.00263 |
S | 384 | P384L | cCt | cTt | 6 | 6 | B.1.177.81 | 0.001136 |
S | 384 | P384P | ccT | ccA | 5 | 6 | B.1.2 | 0.000044 |
S | 384 | P384P | ccT | ccC | 1 | 6 | B.1.2 | 0.000009 |
S | 384 | P384S | Cct | Tct | 6 | 6 | B.1.408 | 0.02214 |
S | 384 | P384S | Cct | Tct | 6 | 6 | B.1.429 | 0.000141 |
S | 384 | P384S | Cct | Tct | 5 | 5 | AY.26 | 0.000142 |
S | 384 | P384S | Cct | Tct | 5 | 5 | AY.39 | 0.000124 |
S | 384 | P384S | Cct | Tct | 5 | 5 | AY.4.2 | 0.000108 |
S | 384 | P384S | Cct | Tct | 5 | 5 | B.1.1.170 | 0.006234 |
S | 384 | P384S | Cct | Tct | 5 | 5 | B.1.1.265 | 0.015773 |
S | 384 | P384L | cCt | cTt | 5 | 5 | B.1.111 | 0.005875 |
S | 384 | P384S | Cct | Tct | 5 | 5 | B.1.243 | 0.000348 |
S | 384 | P384S | Cct | Tct | 5 | 5 | B.1.416 | 0.006345 |
S | 384 | P384L | cCt | cTt | 5 | 5 | B.1.575 | 0.001517 |
S | 384 | P384L | cCt | cTt | 5 | 5 | Q.1 | 0.000632 |
S | 384 | P384L | cCt | cTt | 4 | 4 | AY.100 | 0.000184 |
S | 384 | P384P | ccT | ccC | 4 | 4 | AY.103 | 0.000025 |
S | 384 | P384S | Cct | Tct | 4 | 4 | AY.12 | 0.001264 |
S | 384 | P384L | cCt | cTt | 4 | 4 | AY.36 | 0.000593 |
S | 384 | P384T | Cct | Act | 4 | 4 | AY.4 | 0.000006 |
S | 384 | P384del | CCT | --- | 4 | 4 | AY.4 | 0.000006 |
S | 384 | P384del | CCT | --- | 4 | 4 | AY.43 | 0.000018 |
S | 384 | P384P | ccT | ccC | 2 | 4 | AY.43 | 0.000009 |
S | 384 | P384P | ccT | ccG | 2 | 4 | AY.43 | 0.000009 |
S | 384 | P384L | cCt | cTt | 4 | 4 | AY.7.1 | 0.000451 |
S | 384 | P384L | cCt | cTt | 4 | 4 | AY.99.2 | 0.000369 |
S | 384 | P384del | CCT | --- | 4 | 4 | B.1 | 0.000037 |
S | 384 | P384L | cCt | cTt | 4 | 4 | B.1.1.317 | 0.001647 |
S | 384 | P384L | cCt | cTt | 4 | 4 | B.1.1.434 | 0.001394 |
S | 384 | P384L | cCt | cTt | 4 | 4 | B.1.177.15 | 0.002524 |
S | 384 | P384L | cCt | cTt | 4 | 4 | B.1.177.73 | 0.002265 |
S | 384 | P384S | Cct | Tct | 4 | 4 | B.1.221 | 0.000284 |
S | 384 | P384del | CCT | --- | 4 | 4 | B.1.258 | 0.000266 |
S | 384 | P384L | cCt | cTt | 4 | 4 | B.1.427 | 0.000202 |
S | 384 | P384L | cCt | cTt | 4 | 4 | B.1.470 | 0.005618 |
S | 384 | P384L | cCt | cTt | 4 | 4 | B.1.83 | 0.061538 |
S | 384 | P384S | Cct | Tct | 4 | 4 | C.37 | 0.000464 |
S | 384 | P384S | Cct | Tct | 4 | 4 | P.2 | 0.000747 |
S | 384 | P384L | cCt | cTt | 3 | 3 | A | 0.001161 |
S | 384 | P384L | cCt | cTt | 3 | 3 | AE.8 | 0.001467 |
S | 384 | P384N | CCt | AAt | 3 | 3 | All | 0.000001 |
S | 384 | P384del1 | Cct | -ct | 2 | 3 | All | 0 |
S | 384 | P384del1 | ccT | cc- | 1 | 3 | All | 0 |
S | 384 | P384S | Cct | Tct | 3 | 3 | AY.102 | 0.00008 |
S | 384 | P384L | cCt | cTt | 3 | 3 | AY.33 | 0.0002 |
S | 384 | P384S | Cct | Tct | 3 | 3 | AY.39.1 | 0.000119 |
S | 384 | P384R | cCt | cGt | 3 | 3 | AY.4 | 0.000005 |
S | 384 | P384H | cCt | cAt | 3 | 3 | AY.4 | 0.000005 |
S | 384 | P384L | cCt | cTt | 3 | 3 | AY.4.2 | 0.000065 |
S | 384 | P384L | cCt | cTt | 3 | 3 | AY.42 | 0.000121 |
S | 384 | P384S | Cct | Tct | 3 | 3 | AY.42 | 0.000121 |
S | 384 | P384R | cCt | cGt | 3 | 3 | AY.43 | 0.000013 |
S | 384 | P384H | cCt | cAt | 3 | 3 | AY.44 | 0.000018 |
S | 384 | P384R | cCt | cGt | 3 | 3 | AY.44 | 0.000018 |
S | 384 | P384L | cCt | cTt | 3 | 3 | AY.45 | 0.000365 |
S | 384 | P384P | ccT | ccC | 3 | 3 | AY.54 | 0.000286 |
S | 384 | P384P | ccT | ccC | 3 | 3 | AY.59 | 0.001589 |
S | 384 | P384L | cCt | cTt | 3 | 3 | B.1.1.28 | 0.000934 |
S | 384 | P384S | Cct | Tct | 3 | 3 | B.1.1.312 | 0.005736 |
S | 384 | P384L | cCt | cTt | 3 | 3 | B.1.1.326 | 0.005282 |
S | 384 | P384L | cCt | cTt | 3 | 3 | B.1.1.432 | 0.003797 |
S | 384 | P384H | cCt | cAt | 3 | 3 | B.1.1.7 | 0.000003 |
S | 384 | P384A | Cct | Gct | 3 | 3 | B.1.1.7 | 0.000003 |
S | 384 | P384P | ccT | ccC | 3 | 3 | B.1.177 | 0.00004 |
S | 384 | P384S | Cct | Tct | 3 | 3 | B.1.177.15 | 0.001893 |
S | 384 | P384L | cCt | cTt | 3 | 3 | B.1.177.60 | 0.000655 |
S | 384 | P384L | cCt | cTt | 3 | 3 | B.1.177.7 | 0.000495 |
S | 384 | P384L | cCt | cTt | 3 | 3 | B.1.214.2 | 0.001799 |
S | 384 | P384L | cCt | cTt | 3 | 3 | B.1.221 | 0.000213 |
S | 384 | P384L | cCt | cTt | 3 | 3 | B.1.234 | 0.000396 |
S | 384 | P384S | Cct | Tct | 3 | 3 | B.1.237 | 0.014925 |
S | 384 | P384L | cCt | cTt | 3 | 3 | B.1.243 | 0.000209 |
S | 384 | P384S | Cct | Tct | 3 | 3 | B.1.258 | 0.0002 |
S | 384 | P384S | Cct | Tct | 3 | 3 | B.1.309 | 0.142857 |
S | 384 | P384S | Cct | Tct | 3 | 3 | B.1.351 | 0.000089 |
S | 384 | P384L | cCt | cTt | 3 | 3 | B.1.375 | 0.002459 |
S | 384 | P384S | Cct | Tct | 3 | 3 | B.1.400 | 0.001287 |
S | 384 | P384L | cCt | cTt | 3 | 3 | B.1.436 | 0.003086 |
S | 384 | P384L | cCt | cTt | 3 | 3 | B.1.466.2 | 0.001174 |
S | 384 | P384L | cCt | cTt | 3 | 3 | B.1.523 | 0.007353 |
S | 384 | P384L | cCt | cTt | 3 | 3 | B.1.595 | 0.000783 |
S | 384 | P384L | cCt | cTt | 3 | 3 | B.1.605 | 0.017857 |
S | 384 | P384del | CCT | --- | 3 | 3 | B.1.617.2 | 0.000011 |
S | 384 | P384L | cCt | cTt | 3 | 3 | B.28 | 0.009836 |
S | 384 | P384L | cCt | cTt | 3 | 3 | B.40 | 0.001093 |
S | 384 | P384P | ccT | ccC | 3 | 3 | C.37 | 0.000348 |
S | 384 | P384L | cCt | cTt | 3 | 3 | D.2 | 0.000225 |
S | 384 | P384L | cCt | cTt | 3 | 3 | P.1.15 | 0.000697 |
S | 384 | P384L | cCt | cTt | 3 | 3 | P.2 | 0.00056 |
S | 384 | P384L | cCt | cTt | 3 | 3 | Q.8 | 0.000495 |
S | 384 | P384V | CCt | GTt | 2 | 2 | 0.111111 | |
S | 384 | P384del | CCT | --- | 2 | 2 | 0.111111 | |
S | 384 | P384N | CCt | AAt | 2 | 2 | 0.111111 | |
S | 384 | P384F | CCt | TTt | 2 | 2 | 0.111111 | |
S | 384 | P384I | CCt | ATt | 2 | 2 | 0.111111 | |
S | 384 | P384H | cCt | cAt | 2 | 2 | 0.111111 | |
S | 384 | P384A | Cct | Gct | 2 | 2 | 0.111111 | |
S | 384 | P384T | Cct | Act | 2 | 2 | 0.111111 | |
S | 384 | P384D | CCt | GAt | 2 | 2 | 0.111111 | |
S | 384 | P384L | cCt | cTt | 2 | 2 | 0.111111 | |
S | 384 | P384T | Cct | Act | 2 | 2 | A | 0.000774 |
S | 384 | P384L | cCt | cTt | 2 | 2 | A.27 | 0.003311 |
S | 384 | P384V | CCt | GTt | 2 | 2 | All | 0 |
S | 384 | P384D | CCt | GAt | 2 | 2 | All | 0 |
S | 384 | P384F | CCt | TTt | 2 | 2 | All | 0 |
S | 384 | P384S | Cct | Tct | 2 | 2 | AY.100 | 0.000092 |
S | 384 | P384L | cCt | cTt | 2 | 2 | AY.113 | 0.000285 |
S | 384 | P384S | Cct | Tct | 2 | 2 | AY.116 | 0.000574 |
S | 384 | P384S | Cct | Tct | 2 | 2 | AY.13 | 0.000322 |
S | 384 | P384L | cCt | cTt | 2 | 2 | AY.14 | 0.000176 |
S | 384 | P384P | ccT | ccC | 2 | 2 | AY.25 | 0.000012 |
S | 384 | P384R | cCt | cGt | 2 | 2 | AY.25 | 0.000012 |
S | 384 | P384L | cCt | cTt | 2 | 2 | AY.27 | 0.000129 |
S | 384 | P384S | Cct | Tct | 2 | 2 | AY.33 | 0.000134 |
S | 384 | P384L | cCt | cTt | 2 | 2 | AY.34 | 0.000194 |
S | 384 | P384H | cCt | cAt | 2 | 2 | AY.39 | 0.000049 |
S | 384 | P384P | ccT | ccA | 1 | 2 | AY.4 | 0.000002 |
S | 384 | P384P | ccT | ccC | 1 | 2 | AY.4 | 0.000002 |
S | 384 | P384del | CCT | --- | 2 | 2 | AY.4.5 | 0.000215 |
S | 384 | P384H | cCt | cAt | 2 | 2 | AY.45 | 0.000243 |
S | 384 | P384S | Cct | Tct | 2 | 2 | AY.47 | 0.000062 |
S | 384 | P384S | Cct | Tct | 2 | 2 | AY.48 | 0.00093 |
S | 384 | P384L | cCt | cTt | 2 | 2 | AY.5.3 | 0.000675 |
S | 384 | P384L | cCt | cTt | 2 | 2 | AY.6 | 0.000082 |
S | 384 | P384S | Cct | Tct | 2 | 2 | AY.61 | 0.00021 |
S | 384 | P384L | cCt | cTt | 2 | 2 | AY.61 | 0.00021 |
S | 384 | P384L | cCt | cTt | 2 | 2 | AY.62 | 0.000871 |
S | 384 | P384L | cCt | cTt | 2 | 2 | AY.75 | 0.000112 |
S | 384 | P384P | ccT | ccC | 2 | 2 | AY.75 | 0.000112 |
S | 384 | P384L | cCt | cTt | 2 | 2 | AY.9 | 0.000135 |
S | 384 | P384S | Cct | Tct | 2 | 2 | AY.9.2 | 0.000073 |
S | 384 | P384L | cCt | cTt | 2 | 2 | AY.98 | 0.000158 |
S | 384 | P384S | Cct | Tct | 2 | 2 | B | 0.000256 |
S | 384 | P384R | cCt | cGt | 2 | 2 | B.1 | 0.000018 |
S | 384 | P384P | ccT | ccC | 2 | 2 | B.1.1 | 0.000036 |
S | 384 | P384L | cCt | cTt | 2 | 2 | B.1.1.1 | 0.000653 |
S | 384 | P384S | Cct | Tct | 2 | 2 | B.1.1.157 | 0.001826 |
S | 384 | P384L | cCt | cTt | 2 | 2 | B.1.1.29 | 0.020619 |
S | 384 | P384L | cCt | cTt | 2 | 2 | B.1.1.298 | 0.001724 |
S | 384 | P384A | Cct | Gct | 2 | 2 | B.1.1.318 | 0.000604 |
S | 384 | P384S | Cct | Tct | 2 | 2 | B.1.1.348 | 0.001592 |
S | 384 | P384S | Cct | Tct | 2 | 2 | B.1.1.354 | 0.008772 |
S | 384 | P384L | cCt | cTt | 2 | 2 | B.1.1.38 | 0.117647 |
S | 384 | P384S | Cct | Tct | 2 | 2 | B.1.1.434 | 0.000697 |
S | 384 | P384S | Cct | Tct | 2 | 2 | B.1.1.448 | 0.004065 |
S | 384 | P384L | cCt | cTt | 2 | 2 | B.1.1.528 | 0.009615 |
S | 384 | P384L | cCt | cTt | 2 | 2 | B.1.1.63 | 0.000772 |
S | 384 | P384T | Cct | Act | 2 | 2 | B.1.1.7 | 0.000002 |
S | 384 | P384S | Cct | Tct | 2 | 2 | B.1.149 | 0.006849 |
S | 384 | P384S | Cct | Tct | 2 | 2 | B.1.160.17 | 0.003401 |
S | 384 | P384S | Cct | Tct | 2 | 2 | B.1.177.21 | 0.000153 |
S | 384 | P384S | Cct | Tct | 2 | 2 | B.1.177.7 | 0.00033 |
S | 384 | P384del | CCT | --- | 2 | 2 | B.1.2 | 0.000018 |
S | 384 | P384L | cCt | cTt | 2 | 2 | B.1.258.3 | 0.00335 |
S | 384 | P384L | cCt | cTt | 2 | 2 | B.1.36 | 0.000292 |
S | 384 | P384S | Cct | Tct | 2 | 2 | B.1.36.1 | 0.002281 |
S | 384 | P384L | cCt | cTt | 2 | 2 | B.1.362 | 0.003082 |
S | 384 | P384L | cCt | cTt | 2 | 2 | B.1.396 | 0.001411 |
S | 384 | P384L | cCt | cTt | 2 | 2 | B.1.541 | 0.00885 |
S | 384 | P384L | cCt | cTt | 2 | 2 | B.1.588 | 0.00182 |
S | 384 | P384L | cCt | cTt | 2 | 2 | B.1.609 | 0.000959 |
S | 384 | P384L | cCt | cTt | 2 | 2 | C.36.3.1 | 0.005435 |
S | 384 | P384S | Cct | Tct | 2 | 2 | D.2 | 0.00015 |
S | 384 | P384L | cCt | cTt | 2 | 2 | P.1.12 | 0.000968 |
S | 384 | P384L | cCt | cTt | 2 | 2 | R.1 | 0.00018 |
S | 384 | P384S | Cct | Tct | 1 | 1 | A | 0.000387 |
S | 384 | P384P | ccT | ccC | 1 | 1 | A | 0.000387 |
S | 384 | P384A | Cct | Gct | 1 | 1 | A.27 | 0.001656 |
S | 384 | P384L | cCt | cTt | 1 | 1 | AA.4 | 0.009091 |
S | 384 | P384L | cCt | cTt | 1 | 1 | AD.2 | 0.000219 |
S | 384 | P384del2 | cCT | c-- | 1 | 1 | All | 0 |
S | 384 | P384Q | cCT | cAG | 1 | 1 | All | 0 |
S | 384 | P384L | cCt | cTt | 1 | 1 | AP.1 | 0.001502 |
S | 384 | P384A | Cct | Gct | 1 | 1 | AY.102 | 0.000027 |
S | 384 | P384del | CCT | --- | 1 | 1 | AY.107 | 0.000466 |
S | 384 | P384P | ccT | ccC | 1 | 1 | AY.109 | 0.00074 |
S | 384 | P384L | cCt | cTt | 1 | 1 | AY.11 | 0.001339 |
S | 384 | P384A | Cct | Gct | 1 | 1 | AY.113 | 0.000142 |
S | 384 | P384L | cCt | cTt | 1 | 1 | AY.114 | 0.000231 |
S | 384 | P384L | cCt | cTt | 1 | 1 | AY.117 | 0.000085 |
S | 384 | P384S | Cct | Tct | 1 | 1 | AY.117 | 0.000085 |
S | 384 | P384A | Cct | Gct | 1 | 1 | AY.117 | 0.000085 |
S | 384 | P384L | cCt | cTt | 1 | 1 | AY.118 | 0.000063 |
S | 384 | P384del | CCT | --- | 1 | 1 | AY.118 | 0.000063 |
S | 384 | P384S | Cct | Tct | 1 | 1 | AY.119 | 0.000035 |
S | 384 | P384H | cCt | cAt | 1 | 1 | AY.119 | 0.000035 |
S | 384 | P384H | cCt | cAt | 1 | 1 | AY.12 | 0.000316 |
S | 384 | P384L | cCt | cTt | 1 | 1 | AY.12 | 0.000316 |
S | 384 | P384S | Cct | Tct | 1 | 1 | AY.120 | 0.000037 |
S | 384 | P384L | cCt | cTt | 1 | 1 | AY.120.2 | 0.001285 |
S | 384 | P384L | cCt | cTt | 1 | 1 | AY.120.2.1 | 0.000498 |
S | 384 | P384L | cCt | cTt | 1 | 1 | AY.13 | 0.000161 |
S | 384 | P384R | cCt | cGt | 1 | 1 | AY.13 | 0.000161 |
S | 384 | P384S | Cct | Tct | 1 | 1 | AY.14 | 0.000088 |
S | 384 | P384S | Cct | Tct | 1 | 1 | AY.20 | 0.000039 |
S | 384 | P384L | cCt | cTt | 1 | 1 | AY.23 | 0.00007 |
S | 384 | P384S | Cct | Tct | 1 | 1 | AY.23 | 0.00007 |
S | 384 | P384L | cCt | cTt | 1 | 1 | AY.23.1 | 0.000417 |
S | 384 | P384P | ccT | ccC | 1 | 1 | AY.26 | 0.000028 |
S | 384 | P384P | ccT | ccC | 1 | 1 | AY.29 | 0.000016 |
S | 384 | P384P | ccT | ccC | 1 | 1 | AY.3 | 0.00001 |
S | 384 | P384del | CCT | --- | 1 | 1 | AY.3 | 0.00001 |
S | 384 | P384L | cCt | cTt | 1 | 1 | AY.32 | 0.000532 |
S | 384 | P384L | cCt | cTt | 1 | 1 | AY.34.1 | 0.00051 |
S | 384 | P384S | Cct | Tct | 1 | 1 | AY.35 | 0.000233 |
S | 384 | P384I | CCt | ATt | 1 | 1 | AY.4 | 0.000002 |
S | 384 | P384L | cCt | cTt | 1 | 1 | AY.4.4 | 0.000409 |
S | 384 | P384P | ccT | ccC | 1 | 1 | AY.42 | 0.00004 |
S | 384 | P384A | Cct | Gct | 1 | 1 | AY.43 | 0.000004 |
S | 384 | P384H | cCt | cAt | 1 | 1 | AY.43 | 0.000004 |
S | 384 | P384I | CCt | ATt | 1 | 1 | AY.43 | 0.000004 |
S | 384 | P384S | Cct | Tct | 1 | 1 | AY.45 | 0.000122 |
S | 384 | P384Q | cCT | cAG | 1 | 1 | AY.45 | 0.000122 |
S | 384 | P384S | Cct | Tct | 1 | 1 | AY.46.4 | 0.000165 |
S | 384 | P384L | cCt | cTt | 1 | 1 | AY.46.4 | 0.000165 |
S | 384 | P384L | cCt | cTt | 1 | 1 | AY.46.6 | 0.000072 |
S | 384 | P384S | Cct | Tct | 1 | 1 | AY.46.6 | 0.000072 |
S | 384 | P384H | cCt | cAt | 1 | 1 | AY.47 | 0.000031 |
S | 384 | P384S | Cct | Tct | 1 | 1 | AY.5 | 0.000021 |
S | 384 | P384S | Cct | Tct | 1 | 1 | AY.5.1 | 0.003759 |
S | 384 | P384L | cCt | cTt | 1 | 1 | AY.5.4 | 0.000277 |
S | 384 | P384T | Cct | Act | 1 | 1 | AY.52 | 0.000814 |
S | 384 | P384L | cCt | cTt | 1 | 1 | AY.54 | 0.000095 |
S | 384 | P384S | Cct | Tct | 1 | 1 | AY.54 | 0.000095 |
S | 384 | P384L | cCt | cTt | 1 | 1 | AY.59 | 0.00053 |
S | 384 | P384del | CCT | --- | 1 | 1 | AY.59 | 0.00053 |
S | 384 | P384H | cCt | cAt | 1 | 1 | AY.6 | 0.000041 |
S | 384 | P384P | ccT | ccC | 1 | 1 | AY.61 | 0.000105 |
S | 384 | P384P | ccT | ccC | 1 | 1 | AY.67 | 0.000464 |
S | 384 | P384del | CCT | --- | 1 | 1 | AY.67 | 0.000464 |
S | 384 | P384S | Cct | Tct | 1 | 1 | AY.68 | 0.000274 |
S | 384 | P384P | ccT | ccC | 1 | 1 | AY.68 | 0.000274 |
S | 384 | P384L | cCt | cTt | 1 | 1 | AY.7 | 0.000196 |
S | 384 | P384S | Cct | Tct | 1 | 1 | AY.7.1 | 0.000113 |
S | 384 | P384del | CCT | --- | 1 | 1 | AY.72 | 0.001361 |
S | 384 | P384S | Cct | Tct | 1 | 1 | AY.75.1 | 0.00018 |
S | 384 | P384L | cCt | cTt | 1 | 1 | AY.78 | 0.001541 |
S | 384 | P384A | Cct | Gct | 1 | 1 | AY.80 | 0.001129 |
S | 384 | P384L | cCt | cTt | 1 | 1 | AY.81 | 0.001992 |
S | 384 | P384S | Cct | Tct | 1 | 1 | AY.84 | 0.000437 |
S | 384 | P384L | cCt | cTt | 1 | 1 | AY.87 | 0.000833 |
S | 384 | P384S | Cct | Tct | 1 | 1 | AY.9 | 0.000068 |
S | 384 | P384del | CCT | --- | 1 | 1 | AY.9 | 0.000068 |
S | 384 | P384P | ccT | ccC | 1 | 1 | AY.9.2 | 0.000037 |
S | 384 | P384L | cCt | cTt | 1 | 1 | AY.91.1 | 0.004065 |
S | 384 | P384S | Cct | Tct | 1 | 1 | AY.92 | 0.000287 |
S | 384 | P384L | cCt | cTt | 1 | 1 | AY.92 | 0.000287 |
S | 384 | P384I | CCt | ATt | 1 | 1 | AY.99 | 0.001049 |
S | 384 | P384T | Cct | Act | 1 | 1 | B | 0.000128 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B | 0.000128 |
S | 384 | P384del1 | Cct | -ct | 1 | 1 | B.1 | 0.000009 |
S | 384 | P384P | ccT | ccG | 1 | 1 | B.1 | 0.000009 |
S | 384 | P384H | cCt | cAt | 1 | 1 | B.1 | 0.000009 |
S | 384 | P384T | Cct | Act | 1 | 1 | B.1 | 0.000009 |
S | 384 | P384del | CCT | --- | 1 | 1 | B.1.1 | 0.000018 |
S | 384 | P384T | Cct | Act | 1 | 1 | B.1.1 | 0.000018 |
S | 384 | P384del | CCT | --- | 1 | 1 | B.1.1.137 | 0.0125 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.1.180 | 0.010753 |
S | 384 | P384del | CCT | --- | 1 | 1 | B.1.1.221 | 0.010101 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.1.1.222 | 0.000204 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.1.224 | 0.014286 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.1.236 | 0.006897 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.1.241 | 0.00207 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.1.25 | 0.000569 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.1.280 | 0.003086 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.1.1.280 | 0.003086 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.1.284 | 0.000107 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.1.1.294 | 0.001266 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.1.1.311 | 0.000358 |
S | 384 | P384del | CCT | --- | 1 | 1 | B.1.1.315 | 0.008475 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.1.1.316 | 0.000925 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.1.318 | 0.000302 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.1.1.326 | 0.001761 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.1.328 | 0.016949 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.1.33 | 0.000421 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.1.337 | 0.003597 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.1.1.371 | 0.010417 |
S | 384 | P384T | Cct | Act | 1 | 1 | B.1.1.409 | 0.002833 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.1.447 | 0.035714 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.1.1.453 | 0.008475 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.1.48 | 0.002874 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.1.1.50 | 0.000679 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.1.517 | 0.006803 |
S | 384 | P384del | CCT | --- | 1 | 1 | B.1.1.519 | 0.00004 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.1.526 | 0.003546 |
S | 384 | P384I | CCt | ATt | 1 | 1 | B.1.1.7 | 0.000001 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.1.1.70 | 0.000341 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.110.3 | 0.000718 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.126 | 0.001276 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.1.139 | 0.000733 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.147 | 0.000756 |
S | 384 | P384H | cCt | cAt | 1 | 1 | B.1.160.22 | 0.006757 |
S | 384 | P384del1 | ccT | cc- | 1 | 1 | B.1.160.29 | 0.004219 |
S | 384 | P384P | ccT | ccC | 1 | 1 | B.1.160.30 | 0.002976 |
S | 384 | P384A | Cct | Gct | 1 | 1 | B.1.177 | 0.000013 |
S | 384 | P384del | CCT | --- | 1 | 1 | B.1.177 | 0.000013 |
S | 384 | P384T | Cct | Act | 1 | 1 | B.1.177 | 0.000013 |
S | 384 | P384del | CCT | --- | 1 | 1 | B.1.177.18 | 0.00116 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.1.177.30 | 0.002513 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.1.177.35 | 0.000691 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.177.35 | 0.000691 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.177.43 | 0.001477 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.1.177.51 | 0.004566 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.177.57 | 0.000281 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.177.58 | 0.001332 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.177.6 | 0.000977 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.1.177.76 | 0.002494 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.177.79 | 0.002342 |
S | 384 | P384T | Cct | Act | 1 | 1 | B.1.177.82 | 0.000477 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.177.82 | 0.000477 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.177.9 | 0.001332 |
S | 384 | P384H | cCt | cAt | 1 | 1 | B.1.2 | 0.000009 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.1.210 | 0.002132 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.212 | 0.016667 |
S | 384 | P384T | Cct | Act | 1 | 1 | B.1.232 | 0.000537 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.240 | 0.000216 |
S | 384 | P384P | ccT | ccA | 1 | 1 | B.1.240 | 0.000216 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.241 | 0.000812 |
S | 384 | P384del | CCT | --- | 1 | 1 | B.1.242 | 0.018868 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.250 | 0.014493 |
S | 384 | P384T | Cct | Act | 1 | 1 | B.1.258 | 0.000067 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.1.258.17 | 0.000104 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.279 | 0.000514 |
S | 384 | P384R | cCt | cGt | 1 | 1 | B.1.3 | 0.002618 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.1.311 | 0.000275 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.319 | 0.003049 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.1.346 | 0.001311 |
S | 384 | P384del | CCT | --- | 1 | 1 | B.1.351 | 0.00003 |
S | 384 | P384N | CCt | AAt | 1 | 1 | B.1.36 | 0.000146 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.36.27 | 0.000763 |
S | 384 | P384del | CCT | --- | 1 | 1 | B.1.36.29 | 0.000517 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.36.33 | 0.007576 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.36.36 | 0.000602 |
S | 384 | P384del1 | Cct | -ct | 1 | 1 | B.1.362 | 0.001541 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.1.366 | 0.004878 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.390 | 0.010638 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.1.396 | 0.000706 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.1.404 | 0.001302 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.1.427 | 0.00005 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.428 | 0.00102 |
S | 384 | P384H | cCt | cAt | 1 | 1 | B.1.429 | 0.000024 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.438.1 | 0.000107 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.441 | 0.009615 |
S | 384 | P384del | CCT | --- | 1 | 1 | B.1.446 | 0.02 |
S | 384 | P384H | cCt | cAt | 1 | 1 | B.1.466.2 | 0.000391 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.1.469 | 0.00361 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.499 | 0.00105 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.1.525 | 0.000113 |
S | 384 | P384H | cCt | cAt | 1 | 1 | B.1.525 | 0.000113 |
S | 384 | P384del | CCT | --- | 1 | 1 | B.1.526 | 0.000024 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.537 | 0.02 |
S | 384 | P384A | Cct | Gct | 1 | 1 | B.1.551 | 0.00129 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.564 | 0.000426 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.564.1 | 0.001577 |
S | 384 | P384P | ccT | ccC | 1 | 1 | B.1.575 | 0.000303 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.586 | 0.010989 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.1.595 | 0.000261 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.599 | 0.00365 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.602 | 0.006536 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.1.609 | 0.000479 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.610 | 0.003546 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.612 | 0.002653 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.617.1 | 0.000129 |
S | 384 | P384T | Cct | Act | 1 | 1 | B.1.617.1 | 0.000129 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.1.617.1 | 0.000129 |
S | 384 | P384I | CCt | ATt | 1 | 1 | B.1.617.2 | 0.000004 |
S | 384 | P384H | cCt | cAt | 1 | 1 | B.1.617.3 | 0.002985 |
S | 384 | P384A | Cct | Gct | 1 | 1 | B.1.619.1 | 0.000641 |
S | 384 | P384del | CCT | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 384 | P384del | CCT | --- | 1 | 1 | B.1.621 | 0.000089 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.623 | 0.000536 |
S | 384 | P384P | ccT | ccC | 1 | 1 | B.1.627 | 0.00202 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.636 | 0.006711 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.1.637 | 0.000073 |
S | 384 | P384P | ccT | ccC | 1 | 1 | B.1.637 | 0.000073 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.69 | 0.035714 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.1.91 | 0.002075 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.1.93 | 0.000934 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.1.93 | 0.000934 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.55 | 0.00295 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.58 | 0.010204 |
S | 384 | P384L | cCt | cTt | 1 | 1 | B.6 | 0.00091 |
S | 384 | P384del | CCT | --- | 1 | 1 | B.6 | 0.00091 |
S | 384 | P384S | Cct | Tct | 1 | 1 | B.6.6 | 0.000889 |
S | 384 | P384S | Cct | Tct | 1 | 1 | C.2 | 0.016129 |
S | 384 | P384S | Cct | Tct | 1 | 1 | C.23 | 0.005814 |
S | 384 | P384T | Cct | Act | 1 | 1 | C.35 | 0.000774 |
S | 384 | P384L | cCt | cTt | 1 | 1 | C.36.3 | 0.000567 |
S | 384 | P384R | cCt | cGt | 1 | 1 | C.37 | 0.000116 |
S | 384 | P384S | Cct | Tct | 1 | 1 | C.8 | 0.004464 |
S | 384 | P384P | ccT | ccC | 1 | 1 | D.2 | 0.000075 |
S | 384 | P384L | cCt | cTt | 1 | 1 | N.5 | 0.001767 |
S | 384 | P384del2 | cCT | c-- | 1 | 1 | P.1.1 | 0.000318 |
S | 384 | P384L | cCt | cTt | 1 | 1 | P.1.1 | 0.000318 |
S | 384 | P384del | CCT | --- | 1 | 1 | P.1.1 | 0.000318 |
S | 384 | P384L | cCt | cTt | 1 | 1 | P.1.10.1 | 0.00813 |
S | 384 | P384H | cCt | cAt | 1 | 1 | P.1.14 | 0.000048 |
S | 384 | P384P | ccT | ccG | 1 | 1 | P.1.14 | 0.000048 |
S | 384 | P384P | ccT | ccC | 1 | 1 | P.1.15 | 0.000232 |
S | 384 | P384R | cCt | cGt | 1 | 1 | P.1.17.1 | 0.000875 |
S | 384 | P384L | cCt | cTt | 1 | 1 | P.1.2 | 0.001156 |
S | 384 | P384del | CCT | --- | 1 | 1 | Q.2 | 0.000613 |
S | 384 | P384S | Cct | Tct | 1 | 1 | R.1 | 0.00009 |
S | 384 | P384H | cCt | cAt | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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