CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 375

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S375S375SsyntcCtcT336630650.91057622685-22687
S375S375SsyntcCtcA33662120.062982822685-22687
S375S375SsyntcCtcG3366870.025846722685-22687
S375S375SsynTCcAGc336620.00059417722685-22687
S375S375FnonsyntCctTc225225122685-22687
S375S375deldelTCC---7070122685-22687
S375S375PnonsynTccCcc63610.96825422685-22687
S375S375PnonsynTcCCcA6320.03174622685-22687
S375S375TnonsynTccAcc4242122685-22687
S375S375YnonsyntCctAc3838122685-22687
S375S375AnonsynTccGcc28270.96428622685-22687
S375S375AnonsynTcCGcT2810.035714322685-22687
S375S375CnonsyntCctGc77122685-22687
S375S375del1deltcCtc-320.66666722685-22687
S375S375del1delTcc-cc310.33333322685-22687
S375S375del2delTCc--c210.522685-22687
S375S375del2delTCC--N210.522685-22687
S375S375NnonsynTCcAAc11122685-22687

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S375S375StcCtcT30653366All0.000586
S375S375StcCtcA2123366All0.000041
S375S375StcCtcG873366All0.000017
S375S375STCcAGc23366All0
S375S375StcCtcT635781AY.40.000988
S375S375StcCtcA145781AY.40.000226
S375S375StcCtcG1781AY.40.000002
S375S375StcCtcT548573B.1.1.70.000491
S375S375StcCtcG20573B.1.1.70.000018
S375S375StcCtcA5573B.1.1.70.000004
S375S375FtCctTc225225All0.000043
S375S375StcCtcT220220B.1.1.3330.236814
S375S375StcCtcT182182AV.10.919192
S375S375StcCtcT113134B.1.617.20.000425
S375S375StcCtcA11134B.1.617.20.000041
S375S375StcCtcG10134B.1.617.20.000038
S375S375StcCtcT126129B.10.001154
S375S375StcCtcA2129B.10.000018
S375S375StcCtcG1129B.10.000009
S375S375StcCtcT8895B.1.1770.001159
S375S375StcCtcG695B.1.1770.000079
S375S375StcCtcA195B.1.1770.000013
S375S375StcCtcT9090B.1.1.3120.172084
S375S375StcCtcT7481AY.440.00045
S375S375StcCtcA781AY.440.000043
S375S375StcCtcT7576AY.250.000451
S375S375StcCtcA176AY.250.000006
S375S375delTCC---7070All0.000013
S375S375StcCtcT6767AY.430.000297
S375S375StcCtcT6666AY.30.000656
S375S375FtCctTc6666AY.40.000103
S375S375PTccCcc6163All0.000012
S375S375PTcCCcA263All0
S375S375StcCtcT4646B.1.3460.060288
S375S375StcCtcT4143AY.1030.000255
S375S375StcCtcA243AY.1030.000012
S375S375TTccAcc4242All0.000008
S375S375StcCtcT4040AY.1000.00184
S375S375YtCctAc3838All0.000007
S375S375FtCctTc3838B.1.617.20.000143
S375S375StcCtcT3636AY.990.037775
S375S375StcCtcT3233B.1.20.000282
S375S375StcCtcG133B.1.20.000009
S375S375StcCtcT3233B.1.5260.000752
S375S375StcCtcA133B.1.5260.000024
S375S375StcCtcT3232B.1.5960.002788
S375S375StcCtcT2432P.10.000378
S375S375StcCtcG532P.10.000079
S375S375StcCtcA332P.10.000047
S375S375StcCtcT3031B.1.10.000544
S375S375StcCtcA131B.1.10.000018
S375S375ATccGcc2728All0.000005
S375S375ATcCGcT128All0
S375S375TTccAcc2525B.1.1.70.000022
S375S375delTCC---2525B.1.1.70.000022
S375S375StcCtcT2424AY.1190.000847
S375S375StcCtcG1323AY.1020.000345
S375S375StcCtcT1023AY.1020.000265
S375S375PTccCcc2121AY.9.20.000771
S375S375StcCtcT2020B.1.1.5190.000794
S375S375StcCtcT1718AY.260.000481
S375S375StcCtcG118AY.260.000028
S375S375StcCtcT1515AY.1140.003467
S375S375StcCtcT1415AY.750.000784
S375S375StcCtcA115AY.750.000056
S375S375StcCtcT1515B.1.5990.054745
S375S375StcCtcT1414AD.20.003065
S375S375StcCtcT1214AY.390.000297
S375S375StcCtcG114AY.390.000025
S375S375StcCtcA114AY.390.000025
S375S375YtCctAc1313AY.1190.000459
S375S375StcCtcT1313AY.290.000205
S375S375StcCtcA712AY.4.20.000152
S375S375StcCtcT412AY.4.20.000087
S375S375StcCtcG112AY.4.20.000022
S375S375FtCctTc1111AY.1030.000068
S375S375FtCctTc1111AY.430.000049
S375S375StcCtcT710AY.1210.000947
S375S375StcCtcA310AY.1210.000406
S375S375StcCtcG910AY.470.00028
S375S375StcCtcT110AY.470.000031
S375S375StcCtcT1010C.370.001161
S375S375YtCctAc99AY.40.000014
S375S375FtCctTc99B.1.1.70.000008
S375S375StcCtcT88AY.50.000165
S375S375StcCtcT88AY.70.001568
S375S375StcCtcT88B.1.110.30.005747
S375S375CtCctGc77All0.000001
S375S375StcCtcT77AY.1100.000789
S375S375PTccCcc77AY.40.000011
S375S375FtCctTc77AY.440.000043
S375S375StcCtcT77AY.920.002011
S375S375StcCtcT77B.1.1.5250.038251
S375S375StcCtcT67B.1.1.700.002046
S375S375StcCtcG17B.1.1.700.000341
S375S375StcCtcT77B.1.3510.000208
S375S375StcCtcT77B.1.360.001021
S375S375FtCctTc66AY.1200.000223
S375S375StcCtcT66B.1.1600.000187
S375S375StcCtcT66B.1.5750.00182
S375S375StcCtcT55AY.200.000194
S375S375FtCctTc55AY.290.000079
S375S375StcCtcT55AY.340.000485
S375S375StcCtcT35AY.39.10.000119
S375S375StcCtcA25AY.39.10.000079
S375S375StcCtcT45AY.420.000161
S375S375StcCtcA15AY.420.00004
S375S375StcCtcT55AY.650.002665
S375S375StcCtcT55AY.9.20.000184
S375S375StcCtcT55B.1.466.20.001956
S375S375StcCtcT44A.2.50.001996
S375S375FtCctTc44AY.30.00004
S375S375StcCtcT44AY.450.000487
S375S375StcCtcT44AY.46.40.000658
S375S375delTCC---44B.10.000037
S375S375FtCctTc44B.10.000037
S375S375StcCtcT44B.1.177.630.010811
S375S375StcCtcT44B.1.177.770.002905
S375S375StcCtcT44B.1.2210.000284
S375S375delTCC---44B.1.2580.000266
S375S375StcCtcT44B.1.36.180.001681
S375S375StcCtcT44B.1.4080.01476
S375S375StcCtcT34B.1.4290.000071
S375S375StcCtcG14B.1.4290.000024
S375S375delTCC---44B.1.617.20.000015
S375S375StcCtcT34P.1.140.000143
S375S375StcCtcA14P.1.140.000048
S375S375StcCtcT34P.1.150.000697
S375S375StcCtcA14P.1.150.000232
S375S375StcCtcT44Q.10.000505
S375S375StcCtcA44Q.20.002454
S375S375del1tcCtc-23All0
S375S375del1Tcc-cc13All0
S375S375ATccGcc33AY.1020.00008
S375S375StcCtcT33AY.1180.000188
S375S375StcCtcG33AY.130.000483
S375S375StcCtcT33AY.160.001139
S375S375ATccGcc33AY.40.000005
S375S375FtCctTc33AY.420.000121
S375S375TTccAcc33AY.430.000013
S375S375StcCtcT33AY.610.000314
S375S375StcCtcT33AY.75.10.000541
S375S375FtCctTc33AY.9.20.00011
S375S375PTccCcc33B.1.1.70.000003
S375S375StcCtcT33B.1.177.40.000633
S375S375StcCtcT33B.1.177.450.001144
S375S375FtCctTc33B.1.20.000026
S375S375StcCtcT33B.1.3110.000824
S375S375StcCtcT33B.1.3620.004622
S375S375StcCtcT33B.1.4270.000151
S375S375StcCtcT23B.1.5600.009259
S375S375StcCtcA13B.1.5600.00463
S375S375PTccCcc33B.1.617.20.000011
S375S375FtCctTc33B.1.6370.000219
S375S375StcCtcT33Q.80.000495
S375S375StcCtcT23R.10.00018
S375S375StcCtcA13R.10.00009
S375S375PTccCcc220.111111
S375S375STCcAGc220.111111
S375S375TTccAcc220.111111
S375S375FtCctTc220.111111
S375S375CtCctGc220.111111
S375S375del2TCc--c12All0
S375S375del2TCC--N12All0
S375S375StcCtcA22AY.1040.003968
S375S375StcCtcT22AY.1130.000285
S375S375FtCctTc22AY.1190.000071
S375S375StcCtcT12AY.1200.000037
S375S375StcCtcG12AY.1200.000037
S375S375ATccGcc22AY.200.000078
S375S375StcCtcA12AY.230.00007
S375S375StcCtcT12AY.230.00007
S375S375YtCctAc22AY.250.000012
S375S375PTccCcc22AY.30.00002
S375S375StcCtcT22AY.320.001065
S375S375StcCtcT22AY.360.000296
S375S375FtCctTc22AY.390.000049
S375S375ATccGcc22AY.390.000049
S375S375FtCctTc22AY.39.10.000079
S375S375delTCC---22AY.4.50.000215
S375S375PTccCcc22AY.430.000009
S375S375delTCC---22AY.430.000009
S375S375StcCtcT22AY.46.20.001271
S375S375StcCtcT22AY.540.000191
S375S375StcCtcT22AY.60.000082
S375S375FtCctTc22AY.610.00021
S375S375FtCctTc22AY.650.001066
S375S375StcCtcT22AY.740.000231
S375S375FtCctTc22AY.750.000112
S375S375StcCtcT22AY.790.002421
S375S375FtCctTc22AY.850.000854
S375S375FtCctTc22AY.90.000135
S375S375FtCctTc22AY.9.10.000167
S375S375StcCtcT22AY.9.10.000167
S375S375ATccGcc22B.10.000018
S375S375delTCC---22B.1.1.10.000653
S375S375StcCtcT22B.1.1.1410.004024
S375S375StcCtcT22B.1.1.280.000622
S375S375StcCtcT22B.1.1.4340.000697
S375S375StcCtcT22B.1.1.470.010695
S375S375ATccGcc22B.1.1.70.000002
S375S375YtCctAc22B.1.1770.000026
S375S375delTCC---22B.1.20.000018
S375S375StcCtcT22B.1.2430.000139
S375S375StcCtcA12B.1.2580.000067
S375S375StcCtcT12B.1.2580.000067
S375S375StcCtcT22B.1.3670.001585
S375S375YtCctAc22B.1.4290.000047
S375S375StcCtcT22B.1.438.10.000215
S375S375StcCtcT22B.1.5640.000852
S375S375FtCctTc22B.1.5950.000522
S375S375delTCC---22B.1.5960.000174
S375S375StcCtcT22B.1.6280.000705
S375S375ATcCGcT12B.1.910.002075
S375S375ATccGcc12B.1.910.002075
S375S375StcCtcT22N.50.003534
S375S375StcCtcT12P.1.120.000484
S375S375StcCtcG12P.1.120.000484
S375S375StcCtcT22P.1.90.009615
S375S375StcCtcT22P.20.000373
S375S375StcCtcA22Q.30.00029
S375S375StcCtcT22Q.70.002222
S375S375TTccAcc11A0.000387
S375S375StcCtcT11A.10.000282
S375S375StcCtcT11A.23.10.000704
S375S375StcCtcT11A.270.001656
S375S375NTCcAAc11All0
S375S375StcCtcT11AT.10.005128
S375S375FtCctTc11AU.20.002421
S375S375PTccCcc11AY.1000.000046
S375S375FtCctTc11AY.1000.000046
S375S375PTccCcc11AY.1020.000027
S375S375del2TCc--c11AY.1020.000027
S375S375YtCctAc11AY.1020.000027
S375S375FtCctTc11AY.1020.000027
S375S375ATccGcc11AY.1030.000006
S375S375YtCctAc11AY.1030.000006
S375S375StcCtcG11AY.1050.000643
S375S375delTCC---11AY.1070.000466
S375S375StcCtcT11AY.1080.001103
S375S375FtCctTc11AY.1100.000113
S375S375StcCtcG11AY.1160.000287
S375S375StcCtcG11AY.1170.000085
S375S375ATccGcc11AY.1190.000035
S375S375PTccCcc11AY.1200.000037
S375S375FtCctTc11AY.120.10.000321
S375S375StcCtcG11AY.120.2.10.000498
S375S375TTccAcc11AY.1210.000135
S375S375FtCctTc11AY.1210.000135
S375S375PTccCcc11AY.16.10.00047
S375S375FtCctTc11AY.200.000039
S375S375TTccAcc11AY.230.00007
S375S375delTCC---11AY.230.00007
S375S375StcCtcA11AY.23.10.000417
S375S375CtCctGc11AY.250.000006
S375S375FtCctTc11AY.250.000006
S375S375FtCctTc11AY.260.000028
S375S375FtCctTc11AY.270.000065
S375S375delTCC---11AY.30.00001
S375S375YtCctAc11AY.30.00001
S375S375ATccGcc11AY.320.000532
S375S375YtCctAc11AY.330.000067
S375S375StcCtcT11AY.330.000067
S375S375ATccGcc11AY.330.000067
S375S375StcCtcG11AY.34.10.00051
S375S375delTCC---11AY.350.000233
S375S375StcCtcT11AY.350.000233
S375S375PTccCcc11AY.390.000025
S375S375PTccCcc11AY.39.10.00004
S375S375TTccAcc11AY.40.000002
S375S375FtCctTc11AY.4.20.000022
S375S375PTccCcc11AY.4.2.10.000149
S375S375YtCctAc11AY.420.00004
S375S375PTccCcc11AY.440.000006
S375S375TTccAcc11AY.440.000006
S375S375FtCctTc11AY.450.000122
S375S375delTCC---11AY.460.000104
S375S375ATccGcc11AY.46.20.000635
S375S375delTCC---11AY.46.20.000635
S375S375StcCtcT11AY.46.60.000072
S375S375PTccCcc11AY.470.000031
S375S375ATccGcc11AY.470.000031
S375S375StcCtcT11AY.5.30.000337
S375S375FtCctTc11AY.540.000095
S375S375StcCtcT11AY.590.00053
S375S375ATccGcc11AY.610.000105
S375S375StcCtcT11AY.640.000595
S375S375delTCC---11AY.670.000464
S375S375StcCtcT11AY.7.10.000113
S375S375StcCtcT11AY.700.000209
S375S375delTCC---11AY.720.001361
S375S375delTCC---11AY.75.10.00018
S375S375StcCtcG11AY.770.001127
S375S375StcCtcT11AY.80.000606
S375S375StcCtcT11AY.90.000068
S375S375delTCC---11AY.90.000068
S375S375ATccGcc11AY.960.002075
S375S375StcCtcT11AY.980.000079
S375S375StcCtcT11AY.98.10.000048
S375S375del1Tcc-cc11B0.000128
S375S375PTccCcc11B.10.000009
S375S375TTccAcc11B.10.000009
S375S375YtCctAc11B.10.000009
S375S375delTCC---11B.1.10.000018
S375S375TTccAcc11B.1.10.000018
S375S375ATccGcc11B.1.10.000018
S375S375PTcCCcA11B.1.10.000018
S375S375StcCtcG11B.1.1.100.001115
S375S375delTCC---11B.1.1.1370.0125
S375S375StcCtcT11B.1.1.1610.003534
S375S375PTccCcc11B.1.1.1760.000439
S375S375FtCctTc11B.1.1.2140.000055
S375S375FtCctTc11B.1.1.2570.009709
S375S375StcCtcT11B.1.1.2630.001558
S375S375StcCtcG11B.1.1.2730.006757
S375S375PTccCcc11B.1.1.2740.005051
S375S375StcCtcT11B.1.1.3060.000438
S375S375StcCtcG11B.1.1.3150.008475
S375S375delTCC---11B.1.1.3150.008475
S375S375StcCtcG11B.1.1.3170.000412
S375S375CtCctGc11B.1.1.3180.000302
S375S375FtCctTc11B.1.1.3260.001761
S375S375TTccAcc11B.1.1.370.000193
S375S375StcCtcT11B.1.1.390.00051
S375S375FtCctTc11B.1.1.390.00051
S375S375StcCtcT11B.1.1.4480.002033
S375S375delTCC---11B.1.1.5190.00004
S375S375delTCC---11B.1.1.5210.005348
S375S375StcCtcT11B.1.1.5230.001563
S375S375YtCctAc11B.1.1.70.000001
S375S375NTCcAAc11B.1.1.70.000001
S375S375FtCctTc11B.1.1.700.000341
S375S375PTccCcc11B.1.1.80.003584
S375S375PTccCcc11B.1.1110.001175
S375S375del2TCC--N11B.1.1400.018868
S375S375StcCtcT11B.1.1400.018868
S375S375FtCctTc11B.1.1600.000031
S375S375CtCctGc11B.1.1600.000031
S375S375TTccAcc11B.1.1770.000013
S375S375delTCC---11B.1.1770.000013
S375S375CtCctGc11B.1.1770.000013
S375S375FtCctTc11B.1.1770.000013
S375S375delTCC---11B.1.177.180.00116
S375S375StcCtcT11B.1.177.190.001431
S375S375StcCtcT11B.1.177.210.000076
S375S375StcCtcT11B.1.177.290.066667
S375S375PTccCcc11B.1.177.320.00135
S375S375delTCC---11B.1.177.570.000281
S375S375StcCtcA11B.1.177.600.000218
S375S375StcCtcT11B.1.177.730.000566
S375S375delTCC---11B.1.177.870.000728
S375S375PTccCcc11B.1.20.000009
S375S375TTccAcc11B.1.20.000009
S375S375StcCtcT11B.1.2180.005155
S375S375YtCctAc11B.1.2210.000071
S375S375StcCtcT11B.1.221.40.004167
S375S375StcCtcT11B.1.2220.001692
S375S375StcCtcT11B.1.2340.000132
S375S375PTccCcc11B.1.2360.002053
S375S375delTCC---11B.1.2420.018868
S375S375FtCctTc11B.1.2430.00007
S375S375ATccGcc11B.1.2580.000067
S375S375PTcCCcA11B.1.258.170.000104
S375S375StcCtcT11B.1.258.170.000104
S375S375StcCtcT11B.1.2890.00266
S375S375FtCctTc11B.1.3110.000275
S375S375StcCtcT11B.1.3490.000715
S375S375FtCctTc11B.1.3510.00003
S375S375StcCtcT11B.1.36.170.000494
S375S375StcCtcT11B.1.36.220.001208
S375S375StcCtcT11B.1.36.290.000517
S375S375del1tcCtc-11B.1.36.290.000517
S375S375StcCtcT11B.1.36.80.001
S375S375del1tcCtc-11B.1.3610.001289
S375S375StcCtcT11B.1.3690.000285
S375S375StcCtcT11B.1.4000.000429
S375S375delTCC---11B.1.4090.000781
S375S375PTccCcc11B.1.4270.00005
S375S375TTccAcc11B.1.4270.00005
S375S375FtCctTc11B.1.4270.00005
S375S375ATccGcc11B.1.4290.000024
S375S375FtCctTc11B.1.438.10.000107
S375S375delTCC---11B.1.4460.02
S375S375FtCctTc11B.1.4520.013699
S375S375StcCtcT11B.1.4530.003236
S375S375YtCctAc11B.1.466.20.000391
S375S375StcCtcT11B.1.4680.005714
S375S375StcCtcT11B.1.4950.009091
S375S375StcCtcT11B.1.4970.000315
S375S375PTccCcc11B.1.5030.002488
S375S375CtCctGc11B.1.5250.000113
S375S375TTccAcc11B.1.5260.000024
S375S375FtCctTc11B.1.5640.000426
S375S375StcCtcT11B.1.5810.009434
S375S375StcCtcT11B.1.5880.00091
S375S375StcCtcT11B.1.595.30.026316
S375S375StcCtcT11B.1.595.40.007299
S375S375StcCtcT11B.1.6020.006536
S375S375FtCctTc11B.1.617.10.000129
S375S375YtCctAc11B.1.617.20.000004
S375S375StcCtcT11B.1.6190.000871
S375S375StcCtcT11B.1.619.10.000641
S375S375delTCC---11B.1.6200.000946
S375S375PTccCcc11B.1.6270.00202
S375S375StcCtcT11B.1.9.50.005682
S375S375StcCtcT11B.1.910.002075
S375S375PTccCcc11B.390.002331
S375S375StcCtcA11B.60.00091
S375S375StcCtcT11C.260.007353
S375S375StcCtcG11C.270.018519
S375S375FtCctTc11C.370.000116
S375S375StcCtcT11C.37.10.002618
S375S375FtCctTc11D.20.000075
S375S375ATccGcc11P.1.170.000162
S375S375StcCtcA11P.1.80.004785