CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 371

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S371S371SsyntcCtcT276324440.88454622673-22675
S371S371SsyntcCtcA27633100.11219722673-22675
S371S371SsyntcCtcG276390.0032573322673-22675
S371S371TnonsynTccAcc181181122673-22675
S371S371deldelTCC---5959122673-22675
S371S371PnonsynTccCcc5454122673-22675
S371S371FnonsyntCctTc51500.98039222673-22675
S371S371FnonsyntCCtTT5110.019607822673-22675
S371S371AnonsynTccGcc42380.90476222673-22675
S371S371AnonsynTcCGcA4240.095238122673-22675
S371S371YnonsyntCctAc1212122673-22675
S371S371del1deltcCtc-420.522673-22675
S371S371del1deltCct-c420.522673-22675
S371S371NnonsynTCcAAc22122673-22675
S371S371LnonsyntCCtTA11122673-22675

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S371S371StcCtcT24442763All0.000467
S371S371StcCtcA3102763All0.000059
S371S371StcCtcG92763All0.000002
S371S371StcCtcT690697B.1.1.70.000618
S371S371StcCtcA6697B.1.1.70.000005
S371S371StcCtcG1697B.1.1.70.000001
S371S371StcCtcT252434AY.40.000392
S371S371StcCtcA181434AY.40.000282
S371S371StcCtcG1434AY.40.000002
S371S371TTccAcc181181All0.000035
S371S371StcCtcT137137B.1.1.2730.925676
S371S371StcCtcT131131B.1.1.4121
S371S371StcCtcT126126B.1.1600.00393
S371S371TTccAcc124124B.1.1.70.000111
S371S371StcCtcT99102AY.1030.000615
S371S371StcCtcA3102AY.1030.000019
S371S371StcCtcT8892AY.250.000529
S371S371StcCtcA392AY.250.000018
S371S371StcCtcG192AY.250.000006
S371S371StcCtcT7986AY.440.000481
S371S371StcCtcA786AY.440.000043
S371S371StcCtcT6165B.1.10.001107
S371S371StcCtcA365B.1.10.000054
S371S371StcCtcG165B.1.10.000018
S371S371delTCC---5959All0.000011
S371S371PTccCcc5454All0.00001
S371S371StcCtcT4453B.1.617.20.000166
S371S371StcCtcA953B.1.617.20.000034
S371S371FtCctTc5051All0.00001
S371S371FtCCtTT151All0
S371S371StcCtcT4949AY.46.60.003538
S371S371StcCtcT4747B.1.1260.059949
S371S371StcCtcT4647B.1.20.000405
S371S371StcCtcA147B.1.20.000009
S371S371StcCtcT3846AY.430.000168
S371S371StcCtcA846AY.430.000035
S371S371StcCtcT4043B.10.000366
S371S371StcCtcA343B.10.000027
S371S371ATccGcc3842All0.000007
S371S371ATcCGcA442All0.000001
S371S371StcCtcT4040AY.1180.002506
S371S371StcCtcT3135P.10.000488
S371S371StcCtcA435P.10.000063
S371S371StcCtcA2631B.1.3510.000773
S371S371StcCtcT531B.1.3510.000149
S371S371StcCtcT2529AY.30.000249
S371S371StcCtcA429AY.30.00004
S371S371StcCtcT2727AY.340.002618
S371S371StcCtcT2626B.1.1.560.464286
S371S371FtCctTc2222B.1.1.70.00002
S371S371StcCtcT2021AY.260.000566
S371S371StcCtcG121AY.260.000028
S371S371delTCC---2020B.1.1.70.000018
S371S371PTccCcc1919B.1.1.70.000017
S371S371StcCtcT1919B.1.4270.000959
S371S371TTccAcc1717AY.440.000103
S371S371StcCtcT1516B.1.4290.000353
S371S371StcCtcA116B.1.4290.000024
S371S371StcCtcT1215AY.200.000466
S371S371StcCtcA215AY.200.000078
S371S371StcCtcG115AY.200.000039
S371S371TTccAcc1414AY.50.000289
S371S371ATccGcc1414B.1.1.70.000013
S371S371StcCtcT1414P.1.10.004447
S371S371StcCtcA813AY.1020.000212
S371S371StcCtcT513AY.1020.000133
S371S371StcCtcT1313AY.290.000205
S371S371StcCtcA1313B.1.1.280.004046
S371S371YtCctAc1212All0.000002
S371S371StcCtcT1212AY.330.000801
S371S371StcCtcT711AY.390.000173
S371S371StcCtcA411AY.390.000099
S371S371StcCtcT1011AY.4.20.000217
S371S371StcCtcA111AY.4.20.000022
S371S371StcCtcT99B.1.1.1890.013616
S371S371StcCtcT99C.370.001045
S371S371StcCtcA78AY.98.10.000339
S371S371StcCtcT18AY.98.10.000048
S371S371StcCtcT88B.1.1.2910.005939
S371S371StcCtcT77B.1.1770.000092
S371S371StcCtcT56AY.1130.000712
S371S371StcCtcA16AY.1130.000142
S371S371StcCtcT66AY.750.000336
S371S371StcCtcT66P.1.140.000287
S371S371StcCtcT55AY.360.000741
S371S371ATccGcc55AY.40.000008
S371S371delTCC---55B.10.000046
S371S371StcCtcT55B.1.1.3170.002058
S371S371TTccAcc55B.1.1.3550.076923
S371S371StcCtcT55B.1.177.570.001405
S371S371delTCC---55B.1.2580.000333
S371S371StcCtcT55N.50.008834
S371S371StcCtcT44A0.001548
S371S371del1tcCtc-24All0
S371S371del1tCct-c24All0
S371S371StcCtcA34AY.1190.000106
S371S371StcCtcT14AY.1190.000035
S371S371StcCtcT44AY.39.10.000158
S371S371FtCctTc44B.10.000037
S371S371StcCtcT44B.1.1.500.002716
S371S371StcCtcT44B.1.1.5190.000159
S371S371StcCtcT44B.1.177.440.002076
S371S371TTccAcc44B.1.20.000035
S371S371PTccCcc44B.1.4080.01476
S371S371FtCctTc44B.1.6210.000354
S371S371StcCtcT44P.1.100.001078
S371S371ATccGcc44P.1.160.001496
S371S371StcCtcT33AY.1000.000138
S371S371StcCtcT33AY.1060.001005
S371S371StcCtcT23AY.1200.000074
S371S371StcCtcG13AY.1200.000037
S371S371StcCtcT33AY.420.000121
S371S371StcCtcT23AY.470.000062
S371S371StcCtcA13AY.470.000031
S371S371StcCtcT33AY.60.000123
S371S371StcCtcT33AY.9.10.000251
S371S371YtCctAc33B.1.1.70.000003
S371S371delTCC---33B.1.20.000026
S371S371StcCtcT33B.1.2580.0002
S371S371PTccCcc33B.1.3360.007317
S371S371StcCtcT33B.1.3910.003382
S371S371TTccAcc33B.1.617.20.000011
S371S371delTCC---33B.1.617.20.000011
S371S371StcCtcT33B.1.6280.001057
S371S371StcCtcA33C.10.007177
S371S371NTCcAAc22All0
S371S371ATccGcc22AY.1020.000053
S371S371ATccGcc22AY.1200.000074
S371S371StcCtcT22AY.140.000176
S371S371TTccAcc22AY.250.000012
S371S371StcCtcA22AY.270.000129
S371S371StcCtcT22AY.29.10.000441
S371S371ATccGcc22AY.30.00002
S371S371PTccCcc22AY.340.000194
S371S371StcCtcT22AY.34.10.00102
S371S371delTCC---22AY.350.000466
S371S371StcCtcT22AY.380.000999
S371S371PTccCcc22AY.40.000003
S371S371delTCC---22AY.430.000009
S371S371StcCtcT12AY.450.000122
S371S371StcCtcA12AY.450.000122
S371S371StcCtcT22AY.50.000041
S371S371StcCtcT22AY.650.001066
S371S371StcCtcA12AY.790.001211
S371S371StcCtcT12AY.790.001211
S371S371YtCctAc22B.10.000018
S371S371PTccCcc22B.10.000018
S371S371StcCtcT22B.1.1.2220.000408
S371S371StcCtcT22B.1.1.2940.002532
S371S371StcCtcT22B.1.2100.004264
S371S371StcCtcT22B.1.2210.000142
S371S371PTccCcc22B.1.3110.000549
S371S371FtCctTc22B.1.3510.000059
S371S371StcCtcT22B.1.351.20.000605
S371S371StcCtcT22B.1.5260.000047
S371S371StcCtcT22B.1.617.10.000258
S371S371StcCtcT22B.1.6370.000146
S371S371StcCtcT22D.20.00015
S371S371FtCctTc22D.20.00015
S371S371FtCctTc22P.10.000032
S371S371StcCtcT22P.1.150.000465
S371S371StcCtcT22Q.80.00033
S371S371StcCtcT22R.10.00018
S371S371ATcCGcA11A0.000387
S371S371FtCctTc11A.2.20.001689
S371S371StcCtcT11A.23.10.000704
S371S371StcCtcT11AE.80.000489
S371S371LtCCtTA11All0
S371S371ATccGcc11AY.1030.000006
S371S371delTCC---11AY.1070.000466
S371S371ATcCGcA11AY.1090.00074
S371S371StcCtcA11AY.1100.000113
S371S371StcCtcT11AY.1160.000287
S371S371StcCtcT11AY.116.10.000311
S371S371FtCctTc11AY.1180.000063
S371S371PTccCcc11AY.1200.000037
S371S371StcCtcT11AY.160.00038
S371S371StcCtcT11AY.230.00007
S371S371TTccAcc11AY.230.00007
S371S371PTccCcc11AY.230.00007
S371S371delTCC---11AY.230.00007
S371S371PTccCcc11AY.250.000006
S371S371ATccGcc11AY.290.000016
S371S371YtCctAc11AY.290.000016
S371S371ATccGcc11AY.29.10.000221
S371S371TTccAcc11AY.30.00001
S371S371StcCtcT11AY.3.10.000085
S371S371FtCCtTT11AY.320.000532
S371S371StcCtcT11AY.370.000316
S371S371TTccAcc11AY.390.000025
S371S371YtCctAc11AY.390.000025
S371S371StcCtcT11AY.4.2.10.000149
S371S371delTCC---11AY.4.50.000107
S371S371StcCtcT11AY.4.50.000107
S371S371TTccAcc11AY.430.000004
S371S371PTccCcc11AY.430.000004
S371S371FtCctTc11AY.430.000004
S371S371del1tCct-c11AY.440.000006
S371S371StcCtcT11AY.460.000104
S371S371delTCC---11AY.460.000104
S371S371StcCtcT11AY.46.50.000198
S371S371StcCtcT11AY.5.30.000337
S371S371StcCtcA11AY.500.000799
S371S371TTccAcc11AY.60.000041
S371S371StcCtcT11AY.610.000105
S371S371StcCtcT11AY.680.000274
S371S371StcCtcT11AY.70.000196
S371S371StcCtcT11AY.7.10.000113
S371S371StcCtcT11AY.710.000475
S371S371delTCC---11AY.720.001361
S371S371StcCtcG11AY.730.000665
S371S371delTCC---11AY.75.10.00018
S371S371StcCtcT11AY.75.10.00018
S371S371StcCtcT11AY.90.000068
S371S371delTCC---11AY.90.000068
S371S371FtCctTc11AY.9.10.000084
S371S371StcCtcT11AY.9.20.000037
S371S371PTccCcc11AY.920.000287
S371S371StcCtcA11AY.960.002075
S371S371StcCtcT11AY.980.000079
S371S371StcCtcT11AY.990.001049
S371S371StcCtcA11AY.99.20.000092
S371S371TTccAcc11B.10.000009
S371S371ATcCGcA11B.10.000009
S371S371del1tCct-c11B.10.000009
S371S371ATcCGcA11B.1.10.000018
S371S371delTCC---11B.1.10.000018
S371S371StcCtcT11B.1.1.10.000327
S371S371delTCC---11B.1.1.10.000327
S371S371StcCtcT11B.1.1.1530.001095
S371S371PTccCcc11B.1.1.1760.000439
S371S371FtCctTc11B.1.1.1890.001513
S371S371StcCtcT11B.1.1.1980.001468
S371S371StcCtcT11B.1.1.2160.00089
S371S371delTCC---11B.1.1.2210.010101
S371S371StcCtcT11B.1.1.2340.012048
S371S371StcCtcT11B.1.1.2410.00207
S371S371StcCtcT11B.1.1.2740.005051
S371S371ATccGcc11B.1.1.2840.000107
S371S371delTCC---11B.1.1.3150.008475
S371S371StcCtcT11B.1.1.3180.000302
S371S371StcCtcT11B.1.1.3220.008772
S371S371StcCtcT11B.1.1.330.000421
S371S371StcCtcT11B.1.1.3480.000796
S371S371StcCtcT11B.1.1.390.00051
S371S371StcCtcT11B.1.1.3980.003226
S371S371FtCctTc11B.1.1.4160.000905
S371S371ATccGcc11B.1.1.4320.001266
S371S371StcCtcT11B.1.1.4480.002033
S371S371StcCtcT11B.1.1.460.004367
S371S371StcCtcT11B.1.1.4850.016667
S371S371StcCtcT11B.1.1.520.012195
S371S371delTCC---11B.1.1.5210.005348
S371S371NTCcAAc11B.1.1.5230.001563
S371S371FtCctTc11B.1.1260.001276
S371S371StcCtcT11B.1.130.002375
S371S371delTCC---11B.1.1400.018868
S371S371StcCtcT11B.1.1430.021277
S371S371StcCtcT11B.1.1570.002985
S371S371PTccCcc11B.1.1600.000031
S371S371TTccAcc11B.1.1600.000031
S371S371FtCctTc11B.1.160.170.001701
S371S371PTccCcc11B.1.1640.014925
S371S371StcCtcT11B.1.1700.00431
S371S371delTCC---11B.1.1770.000013
S371S371PTccCcc11B.1.1770.000013
S371S371delTCC---11B.1.177.180.00116
S371S371StcCtcT11B.1.177.180.00116
S371S371StcCtcT11B.1.177.210.000076
S371S371delTCC---11B.1.177.500.004695
S371S371StcCtcT11B.1.177.540.000606
S371S371PTccCcc11B.1.177.570.000281
S371S371StcCtcT11B.1.177.810.000189
S371S371StcCtcT11B.1.1820.007246
S371S371ATccGcc11B.1.2210.000071
S371S371YtCctAc11B.1.2210.000071
S371S371StcCtcT11B.1.2340.000132
S371S371StcCtcT11B.1.2400.000216
S371S371delTCC---11B.1.2420.018868
S371S371StcCtcT11B.1.2430.00007
S371S371TTccAcc11B.1.2580.000067
S371S371StcCtcT11B.1.258.110.000396
S371S371PTccCcc11B.1.258.50.008772
S371S371StcCtcT11B.1.3110.000275
S371S371FtCctTc11B.1.3430.020833
S371S371TTccAcc11B.1.351.50.0006
S371S371FtCctTc11B.1.3690.000285
S371S371del1tcCtc-11B.1.3690.000285
S371S371PTccCcc11B.1.3910.001127
S371S371TTccAcc11B.1.4000.000429
S371S371StcCtcT11B.1.4090.000781
S371S371delTCC---11B.1.4090.000781
S371S371StcCtcT11B.1.4220.000812
S371S371ATccGcc11B.1.4290.000024
S371S371PTccCcc11B.1.4290.000024
S371S371StcCtcT11B.1.4320.011236
S371S371StcCtcT11B.1.438.10.000107
S371S371LtCCtTA11B.1.4460.02
S371S371StcCtcT11B.1.4530.003236
S371S371PTccCcc11B.1.4590.004082
S371S371YtCctAc11B.1.466.20.000391
S371S371TTccAcc11B.1.5170.000427
S371S371StcCtcT11B.1.5240.001406
S371S371StcCtcT11B.1.5410.004425
S371S371StcCtcT11B.1.5460.003704
S371S371StcCtcT11B.1.5600.00463
S371S371StcCtcT11B.1.5720.025
S371S371StcCtcG11B.1.5750.000303
S371S371FtCctTc11B.1.5770.000687
S371S371StcCtcT11B.1.5950.000261
S371S371StcCtcT11B.1.5960.000087
S371S371StcCtcT11B.1.6090.000479
S371S371YtCctAc11B.1.617.20.000004
S371S371PTccCcc11B.1.617.20.000004
S371S371del1tcCtc-11B.1.617.20.000004
S371S371delTCC---11B.1.6200.000946
S371S371StcCtcT11B.1.6200.000946
S371S371StcCtcT11B.1.6210.000089
S371S371NTCcAAc11B.1.910.002075
S371S371YtCctAc11B.1.910.002075
S371S371TTccAcc11B.1.910.002075
S371S371StcCtcT11B.110.005128
S371S371PTccCcc11B.360.076923
S371S371StcCtcT11B.60.00091
S371S371PTccCcc11C.370.000116
S371S371StcCtcT11C.90.030303
S371S371ATccGcc11D.20.000075
S371S371StcCtcT11N.10.016949
S371S371ATccGcc11P.10.000016
S371S371FtCctTc11P.1.140.000048
S371S371FtCctTc11P.1.70.000319
S371S371YtCctAc11P.20.000187
S371S371StcCtcT11P.20.000187
S371S371PTccCcc11P.20.000187
S371S371PTccCcc11Q.10.000126
S371S371FtCctTc11Q.80.000165
S371S371PTccCcc11Q.80.000165