CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 370

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S370N370SnonsynaAtaGt465465122670-22672
S370N370NsynaaTaaC463463122670-22672
S370N370KnonsynaaTaaA2241260.562522670-22672
S370N370KnonsynaaTaaG224980.437522670-22672
S370N370deldelAAT---5555122670-22672
S370N370HnonsynAatCat5050122670-22672
S370N370DnonsynAatGat38370.97368422670-22672
S370N370DnonsynAaTGaC3810.026315822670-22672
S370N370InonsynaAtaTt99122670-22672
S370N370YnonsynAatTat66122670-22672
S370N370TnonsynaAtaCt55122670-22672
S370N370del1delaaTaa-320.66666722670-22672
S370N370del1delAat-at310.33333322670-22672
S370N370LnonsynAAtCTt22122670-22672
S370N370RnonsynAAtCGt22122670-22672
S370N370MnonsynaATaTG11122670-22672
S370N370QnonsynAaTCaG11122670-22672

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S370N370SaAtaGt465465All0.000089
S370N370NaaTaaC463463All0.000089
S370N370SaAtaGt257257AY.1030.001596
S370N370KaaTaaA126224All0.000024
S370N370KaaTaaG98224All0.000019
S370N370NaaTaaC9393B.1.1.70.000083
S370N370SaAtaGt9393B.1.6030.989362
S370N370KaaTaaG6870B.1.1.70.000061
S370N370KaaTaaA270B.1.1.70.000002
S370N370delAAT---5555All0.000011
S370N370HAatCat5050All0.00001
S370N370HAatCat4747B.1.1.70.000042
S370N370NaaTaaC4646AY.920.013215
S370N370DAatGat3738All0.000007
S370N370DAaTGaC138All0
S370N370SaAtaGt3636B.10.00033
S370N370KaaTaaA3334AY.40.000051
S370N370KaaTaaG134AY.40.000002
S370N370KaaTaaA3232B.1.10.000581
S370N370DAatGat2929B.1.1.70.000026
S370N370NaaTaaC2525B.1.617.20.000094
S370N370NaaTaaC2424AY.30.000239
S370N370KaaTaaA2323AY.4.50.002472
S370N370NaaTaaC1919AY.420.000764
S370N370NaaTaaC1818AY.4.20.00039
S370N370delAAT---1818B.1.1.70.000016
S370N370NaaTaaC1717AY.1030.000106
S370N370SaAtaGt1717AY.40.000026
S370N370SaAtaGt1616B.1.617.20.00006
S370N370NaaTaaC1515AY.200.000583
S370N370NaaTaaC1313AY.40.00002
S370N370NaaTaaC1212B.1.1600.000374
S370N370NaaTaaC1212B.1.20.000106
S370N370NaaTaaC1010AY.390.000247
S370N370NaaTaaC1010AY.440.000061
S370N370IaAtaTt99All0.000002
S370N370NaaTaaC99B.1.10.000163
S370N370NaaTaaC88AY.250.000048
S370N370NaaTaaC88AY.430.000035
S370N370NaaTaaC88B.1.1.3170.003294
S370N370NaaTaaC88B.1.1.500.005431
S370N370YAatTat66All0.000001
S370N370SaAtaGt66B.1.1.70.000005
S370N370NaaTaaC66B.1.5960.000523
S370N370TaAtaCt55All0.000001
S370N370SaAtaGt55AY.290.000079
S370N370NaaTaaC55AY.330.000334
S370N370KaaTaaG45AY.430.000018
S370N370KaaTaaA15AY.430.000004
S370N370KaaTaaA55AY.90.000338
S370N370delAAT---55B.10.000046
S370N370SaAtaGt55B.1.177.540.003032
S370N370delAAT---55B.1.2580.000333
S370N370NaaTaaC55B.1.3490.003574
S370N370NaaTaaC44AY.100.00212
S370N370NaaTaaC44AY.1020.000106
S370N370SaAtaGt44AY.330.000267
S370N370NaaTaaC44AY.460.000416
S370N370KaaTaaA44AY.80.002424
S370N370NaaTaaC44B.10.000037
S370N370KaaTaaG44B.1.1.2840.00043
S370N370NaaTaaC44B.1.1.3980.012903
S370N370KaaTaaG44B.1.36.170.001976
S370N370NaaTaaC44B.1.5260.000094
S370N370NaaTaaC44B.1.6090.001918
S370N370del1aaTaa-23All0
S370N370del1Aat-at13All0
S370N370NaaTaaC33AY.1000.000138
S370N370NaaTaaC33AY.1190.000106
S370N370NaaTaaC33AY.290.000047
S370N370NaaTaaC33AY.980.000237
S370N370NaaTaaC33B.1.1.2540.033708
S370N370NaaTaaC33B.1.1.5190.000119
S370N370SaAtaGt33B.1.20.000026
S370N370KaaTaaG33B.1.4270.000151
S370N370KaaTaaA33B.1.4290.000071
S370N370NaaTaaC33B.1.4510.02459
S370N370delAAT---33B.1.617.20.000011
S370N370KaaTaaA23B.1.617.20.000008
S370N370KaaTaaG13B.1.617.20.000004
S370N370NaaTaaC33B.1.6210.000266
S370N370HAatCat220.111111
S370N370LAAtCTt220.111111
S370N370RAAtCGt220.111111
S370N370IaAtaTt220.111111
S370N370LAAtCTt22All0
S370N370RAAtCGt22All0
S370N370KaaTaaA22AY.1200.000074
S370N370delAAT---22AY.350.000466
S370N370DAatGat22AY.430.000009
S370N370SaAtaGt22AY.440.000012
S370N370TaAtaCt22AY.440.000012
S370N370SaAtaGt22AY.470.000062
S370N370KaaTaaA22AY.580.001815
S370N370SaAtaGt22AY.710.00095
S370N370KaaTaaA22B.10.000018
S370N370KaaTaaG22B.1.1580.047619
S370N370KaaTaaG12B.1.1770.000013
S370N370KaaTaaA12B.1.1770.000013
S370N370KaaTaaG22B.1.177.40.000422
S370N370DAatGat22B.1.177.520.003515
S370N370delAAT---22B.1.20.000018
S370N370KaaTaaA12B.1.20.000009
S370N370KaaTaaG12B.1.20.000009
S370N370KaaTaaG22B.1.2360.004107
S370N370NaaTaaC22B.1.4290.000047
S370N370NaaTaaC22B.1.4700.002809
S370N370YAatTat22B.1.617.20.000008
S370N370NaaTaaC22C.370.000232
S370N370SaAtaGt22C.370.000232
S370N370SaAtaGt22P.10.000032
S370N370NaaTaaC22P.1.150.000465
S370N370DAaTGaC12P.20.000187
S370N370DAatGat12P.20.000187
S370N370NaaTaaC11A0.000387
S370N370MaATaTG11All0
S370N370QAaTCaG11All0
S370N370SaAtaGt11AY.1020.000027
S370N370KaaTaaA11AY.1030.000006
S370N370delAAT---11AY.1070.000466
S370N370NaaTaaC11AY.1090.00074
S370N370NaaTaaC11AY.1130.000142
S370N370IaAtaTt11AY.1170.000085
S370N370DAatGat11AY.1180.000063
S370N370NaaTaaC11AY.1200.000037
S370N370NaaTaaC11AY.160.00038
S370N370KaaTaaA11AY.170.008197
S370N370delAAT---11AY.230.00007
S370N370NaaTaaC11AY.23.10.000417
S370N370DAatGat11AY.250.000006
S370N370SaAtaGt11AY.250.000006
S370N370IaAtaTt11AY.250.000006
S370N370KaaTaaA11AY.260.000028
S370N370NaaTaaC11AY.270.000065
S370N370YAatTat11AY.30.00001
S370N370IaAtaTt11AY.30.00001
S370N370NaaTaaC11AY.3.10.000085
S370N370KaaTaaG11AY.320.000532
S370N370KaaTaaA11AY.330.000067
S370N370TaAtaCt11AY.360.000148
S370N370IaAtaTt11AY.40.000002
S370N370TaAtaCt11AY.40.000002
S370N370SaAtaGt11AY.4.20.000022
S370N370delAAT---11AY.4.50.000107
S370N370SaAtaGt11AY.4.50.000107
S370N370del1aaTaa-11AY.430.000004
S370N370SaAtaGt11AY.430.000004
S370N370delAAT---11AY.430.000004
S370N370KaaTaaG11AY.440.000006
S370N370NaaTaaC11AY.450.000122
S370N370SaAtaGt11AY.450.000122
S370N370delAAT---11AY.460.000104
S370N370SaAtaGt11AY.46.60.000072
S370N370NaaTaaC11AY.470.000031
S370N370YAatTat11AY.50.000021
S370N370NaaTaaC11AY.60.000041
S370N370NaaTaaC11AY.610.000105
S370N370delAAT---11AY.720.001361
S370N370NaaTaaC11AY.740.000116
S370N370delAAT---11AY.75.10.00018
S370N370NaaTaaC11AY.790.001211
S370N370KaaTaaA11AY.870.000833
S370N370NaaTaaC11AY.90.000068
S370N370delAAT---11AY.90.000068
S370N370del1Aat-at11B.10.000009
S370N370MaATaTG11B.10.000009
S370N370delAAT---11B.1.10.000018
S370N370SaAtaGt11B.1.10.000018
S370N370YAatTat11B.1.1.10.000327
S370N370delAAT---11B.1.1.10.000327
S370N370NaaTaaC11B.1.1.2200.001859
S370N370delAAT---11B.1.1.2210.010101
S370N370SaAtaGt11B.1.1.2650.003155
S370N370NaaTaaC11B.1.1.2720.005208
S370N370NaaTaaC11B.1.1.280.000311
S370N370delAAT---11B.1.1.3150.008475
S370N370SaAtaGt11B.1.1.3160.000925
S370N370SaAtaGt11B.1.1.3530.020833
S370N370NaaTaaC11B.1.1.3690.000446
S370N370KaaTaaA11B.1.1.5190.00004
S370N370delAAT---11B.1.1.5210.005348
S370N370del1aaTaa-11B.1.1.70.000001
S370N370KaaTaaA11B.1.1280.000635
S370N370delAAT---11B.1.1400.018868
S370N370IaAtaTt11B.1.160.220.006757
S370N370KaaTaaA11B.1.160.320.004292
S370N370delAAT---11B.1.1770.000013
S370N370delAAT---11B.1.177.180.00116
S370N370TaAtaCt11B.1.177.210.000076
S370N370KaaTaaG11B.1.177.440.000519
S370N370delAAT---11B.1.177.500.004695
S370N370KaaTaaG11B.1.2210.000071
S370N370NaaTaaC11B.1.2360.002053
S370N370SaAtaGt11B.1.2390.001221
S370N370delAAT---11B.1.2420.018868
S370N370NaaTaaC11B.1.2430.00007
S370N370NaaTaaC11B.1.2580.000067
S370N370DAatGat11B.1.2580.000067
S370N370NaaTaaC11B.1.258.170.000104
S370N370NaaTaaC11B.1.3510.00003
S370N370KaaTaaA11B.1.36.180.00042
S370N370NaaTaaC11B.1.36.290.000517
S370N370delAAT---11B.1.4090.000781
S370N370NaaTaaC11B.1.4590.004082
S370N370IaAtaTt11B.1.5330.009615
S370N370NaaTaaC11B.1.5970.00463
S370N370KaaTaaA11B.1.5990.00365
S370N370IaAtaTt11B.1.617.20.000004
S370N370delAAT---11B.1.6200.000946
S370N370KaaTaaA11B.1.6210.000089
S370N370KaaTaaG11B.1.910.002075
S370N370QAaTCaG11B.1.910.002075
S370N370HAatCat11B.1.910.002075
S370N370KaaTaaA11B.6.60.000889
S370N370NaaTaaC11C.330.058824
S370N370NaaTaaC11D.20.000075
S370N370NaaTaaC11N.90.005952
S370N370SaAtaGt11P.1.140.000048
S370N370KaaTaaA11P.20.000187
S370N370NaaTaaC11P.20.000187
S370N370NaaTaaC11P.70.004367
S370N370YAatTat11Q.80.000165