CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 367 & Codon = Ttc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S367V367FnonsynGtcTtc31463146122661-22663

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S367V367FGtcTtc31463146All0.000602
S367V367FGtcTtc12901290A.23.10.908451
S367V367FGtcTtc602602B.1.1.70.000539
S367V367FGtcTtc164164B.1.20.001444
S367V367FGtcTtc120120AY.40.000187
S367V367FGtcTtc9191A.230.957895
S367V367FGtcTtc6666AY.330.004407
S367V367FGtcTtc5959B.10.00054
S367V367FGtcTtc4040B.1.1.3840.952381
S367V367FGtcTtc3838A0.014706
S367V367FGtcTtc3030AY.250.00018
S367V367FGtcTtc2626AY.430.000115
S367V367FGtcTtc2424B.1.617.20.00009
S367V367FGtcTtc2222B.1.10.000399
S367V367FGtcTtc2020B0.002556
S367V367FGtcTtc1919B.1.1.2140.001054
S367V367FGtcTtc1515AY.1170.001268
S367V367FGtcTtc1515B.1.5260.000353
S367V367FGtcTtc1515P.10.000236
S367V367FGtcTtc1414AY.470.000435
S367V367FGtcTtc1313AY.440.000079
S367V367FGtcTtc1212C.370.001393
S367V367FGtcTtc1111B.1.1600.000343
S367V367FGtcTtc1111B.1.5960.000959
S367V367FGtcTtc1010AY.1020.000265
S367V367FGtcTtc1010B.1.160.140.021186
S367V367FGtcTtc1010B.1.2210.00071
S367V367FGtcTtc99AY.30.00009
S367V367FGtcTtc99B.1.1.3190.157895
S367V367FGtcTtc99B.1.3510.000268
S367V367FGtcTtc99B.1.80.017751
S367V367FGtcTtc88AY.1030.00005
S367V367FGtcTtc88AY.1200.000297
S367V367FGtcTtc88AY.390.000198
S367V367FGtcTtc88B.1.4290.000188
S367V367FGtcTtc77AY.4.20.000152
S367V367FGtcTtc77B.1.258.170.000728
S367V367FGtcTtc77B.1.4270.000353
S367V367FGtcTtc77B.1.4950.063636
S367V367FGtcTtc77B.230.020468
S367V367FGtcTtc66AY.160.002278
S367V367FGtcTtc66AY.680.001642
S367V367FGtcTtc66B.1.1.5190.000238
S367V367FGtcTtc55AY.1000.00023
S367V367FGtcTtc55AY.200.000194
S367V367FGtcTtc55AY.290.000079
S367V367FGtcTtc55B.1.1.1740.016892
S367V367FGtcTtc55B.1.6210.000443
S367V367FGtcTtc55B.150.087719
S367V367FGtcTtc55P.20.000933
S367V367FGtcTtc44A.250.072727
S367V367FGtcTtc44AY.50.000083
S367V367FGtcTtc44B.1.1770.000053
S367V367FGtcTtc44B.1.177.320.005398
S367V367FGtcTtc44B.4.50.047619
S367V367FGtcTtc33A.10.000846
S367V367FGtcTtc33AY.10.001187
S367V367FGtcTtc33AY.450.000365
S367V367FGtcTtc33AY.700.000626
S367V367FGtcTtc33AY.9.20.00011
S367V367FGtcTtc33B.1.1.1780.125
S367V367FGtcTtc33B.1.1.3480.002389
S367V367FGtcTtc33B.1.1.4340.001046
S367V367FGtcTtc33B.1.1.5210.016043
S367V367FGtcTtc33B.1.177.210.000229
S367V367FGtcTtc33B.1.2400.000647
S367V367FGtcTtc33B.1.36.310.005254
S367V367FGtcTtc33B.1.3670.002377
S367V367FGtcTtc22AE.80.000978
S367V367FGtcTtc22AY.39.10.000079
S367V367FGtcTtc22AY.4.50.000215
S367V367FGtcTtc22AY.46.40.000329
S367V367FGtcTtc22AY.60.000082
S367V367FGtcTtc22AY.7.10.000225
S367V367FGtcTtc22AY.750.000112
S367V367FGtcTtc22AY.980.000158
S367V367FGtcTtc22B.1.1.2200.003717
S367V367FGtcTtc22B.1.1.2220.000408
S367V367FGtcTtc22B.1.1.370.000386
S367V367FGtcTtc22B.1.1.440.004819
S367V367FGtcTtc22B.1.1.630.000772
S367V367FGtcTtc22B.1.1280.001271
S367V367FGtcTtc22B.1.177.770.001452
S367V367FGtcTtc22B.1.1880.033333
S367V367FGtcTtc22B.1.2060.001631
S367V367FGtcTtc22B.1.2430.000139
S367V367FGtcTtc22B.1.2580.000133
S367V367FGtcTtc22B.1.3110.000549
S367V367FGtcTtc22B.1.3330.021053
S367V367FGtcTtc22B.1.36.180.00084
S367V367FGtcTtc22B.1.36.290.001035
S367V367FGtcTtc22B.1.3980.005952
S367V367FGtcTtc22B.1.4590.008163
S367V367FGtcTtc22B.1.4620.014493
S367V367FGtcTtc22B.1.5210.00995
S367V367FGtcTtc22B.1.5250.000226
S367V367FGtcTtc22B.1.5950.000522
S367V367FGtcTtc22B.1.6090.000959
S367V367FGtcTtc22B.400.000729
S367V367FGtcTtc22B.550.0059
S367V367FGtcTtc22C.160.002121
S367V367FGtcTtc22N.90.011905
S367V367FGtcTtc22Q.80.00033
S367V367FGtcTtc22R.10.00018
S367V367FGtcTtc11A.20.000662
S367V367FGtcTtc11A.2.20.001689
S367V367FGtcTtc11A.2.40.003367
S367V367FGtcTtc11A.50.001923
S367V367FGtcTtc11AY.1180.000063
S367V367FGtcTtc11AY.120.2.10.000498
S367V367FGtcTtc11AY.140.000088
S367V367FGtcTtc11AY.190.00114
S367V367FGtcTtc11AY.230.00007
S367V367FGtcTtc11AY.29.10.000221
S367V367FGtcTtc11AY.460.000104
S367V367FGtcTtc11AY.530.000288
S367V367FGtcTtc11AY.840.000437
S367V367FGtcTtc11AY.850.000427
S367V367FGtcTtc11AY.9.10.000084
S367V367FGtcTtc11AY.920.000287
S367V367FGtcTtc11AY.940.000443
S367V367FGtcTtc11AY.98.10.000048
S367V367FGtcTtc11AY.990.001049
S367V367FGtcTtc11AY.99.10.001553
S367V367FGtcTtc11AZ.20.000821
S367V367FGtcTtc11B.1.1.10.000327
S367V367FGtcTtc11B.1.1.120.007463
S367V367FGtcTtc11B.1.1.1320.014925
S367V367FGtcTtc11B.1.1.1340.011364
S367V367FGtcTtc11B.1.1.1390.022727
S367V367FGtcTtc11B.1.1.1520.04
S367V367FGtcTtc11B.1.1.1530.001095
S367V367FGtcTtc11B.1.1.1570.000913
S367V367FGtcTtc11B.1.1.1890.001513
S367V367FGtcTtc11B.1.1.2070.001182
S367V367FGtcTtc11B.1.1.2280.003049
S367V367FGtcTtc11B.1.1.2410.00207
S367V367FGtcTtc11B.1.1.250.000569
S367V367FGtcTtc11B.1.1.2910.000742
S367V367FGtcTtc11B.1.1.3030.002762
S367V367FGtcTtc11B.1.1.3110.000358
S367V367FGtcTtc11B.1.1.3540.004386
S367V367FGtcTtc11B.1.1.3690.000446
S367V367FGtcTtc11B.1.1.3720.000689
S367V367FGtcTtc11B.1.1.390.00051
S367V367FGtcTtc11B.1.1.3980.003226
S367V367FGtcTtc11B.1.1.4190.007407
S367V367FGtcTtc11B.1.1.4200.001006
S367V367FGtcTtc11B.1.1.4320.001266
S367V367FGtcTtc11B.1.1.460.004367
S367V367FGtcTtc11B.1.1.5220.017241
S367V367FGtcTtc11B.1.1.670.004566
S367V367FGtcTtc11B.1.1.700.000341
S367V367FGtcTtc11B.1.1.830.00271
S367V367FGtcTtc11B.1.110.30.000718
S367V367FGtcTtc11B.1.130.002375
S367V367FGtcTtc11B.1.1690.014925
S367V367FGtcTtc11B.1.1730.026316
S367V367FGtcTtc11B.1.177.170.000821
S367V367FGtcTtc11B.1.177.40.000211
S367V367FGtcTtc11B.1.177.730.000566
S367V367FGtcTtc11B.1.177.750.001041
S367V367FGtcTtc11B.1.177.810.000189
S367V367FGtcTtc11B.1.1890.004292
S367V367FGtcTtc11B.1.2050.02381
S367V367FGtcTtc11B.1.2180.005155
S367V367FGtcTtc11B.1.220.001318
S367V367FGtcTtc11B.1.2230.002778
S367V367FGtcTtc11B.1.2250.015385
S367V367FGtcTtc11B.1.2340.000132
S367V367FGtcTtc11B.1.2370.004975
S367V367FGtcTtc11B.1.2390.001221
S367V367FGtcTtc11B.1.258.140.00098
S367V367FGtcTtc11B.1.2650.001271
S367V367FGtcTtc11B.1.2980.002114
S367V367FGtcTtc11B.1.3410.022727
S367V367FGtcTtc11B.1.3490.000715
S367V367FGtcTtc11B.1.351.30.000876
S367V367FGtcTtc11B.1.360.000146
S367V367FGtcTtc11B.1.36.10.00114
S367V367FGtcTtc11B.1.36.170.000494
S367V367FGtcTtc11B.1.36.220.001208
S367V367FGtcTtc11B.1.36.240.006173
S367V367FGtcTtc11B.1.36.280.005747
S367V367FGtcTtc11B.1.3610.001289
S367V367FGtcTtc11B.1.3690.000285
S367V367FGtcTtc11B.1.3930.028571
S367V367FGtcTtc11B.1.4110.003704
S367V367FGtcTtc11B.1.4220.000812
S367V367FGtcTtc11B.1.4260.001009
S367V367FGtcTtc11B.1.4460.02
S367V367FGtcTtc11B.1.4480.002625
S367V367FGtcTtc11B.1.466.20.000391
S367V367FGtcTtc11B.1.4680.005714
S367V367FGtcTtc11B.1.4970.000315
S367V367FGtcTtc11B.1.5230.002451
S367V367FGtcTtc11B.1.5240.001406
S367V367FGtcTtc11B.1.5400.009709
S367V367FGtcTtc11B.1.5450.014493
S367V367FGtcTtc11B.1.5640.000426
S367V367FGtcTtc11B.1.5650.00081
S367V367FGtcTtc11B.1.5760.000907
S367V367FGtcTtc11B.1.5770.000687
S367V367FGtcTtc11B.1.6020.006536
S367V367FGtcTtc11B.110.005128
S367V367FGtcTtc11B.30.000831
S367V367FGtcTtc11B.40.002208
S367V367FGtcTtc11B.60.00091
S367V367FGtcTtc11B.610.005747
S367V367FGtcTtc11C.350.000774
S367V367FGtcTtc11C.37.10.002618
S367V367FGtcTtc11P.1.140.000048
S367V367FGtcTtc11P.1.170.000162
S367V367FGtcTtc11Q.10.000126
S367V367FGtcTtc11Q.30.000145
S367V367FGtcTtc11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.