CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 367 | V367F | nonsyn | Gtc | Ttc | 3146 | 3146 | 1 | 22661-22663 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 367 | V367F | Gtc | Ttc | 3146 | 3146 | All | 0.000602 |
S | 367 | V367F | Gtc | Ttc | 1290 | 1290 | A.23.1 | 0.908451 |
S | 367 | V367F | Gtc | Ttc | 602 | 602 | B.1.1.7 | 0.000539 |
S | 367 | V367F | Gtc | Ttc | 164 | 164 | B.1.2 | 0.001444 |
S | 367 | V367F | Gtc | Ttc | 120 | 120 | AY.4 | 0.000187 |
S | 367 | V367F | Gtc | Ttc | 91 | 91 | A.23 | 0.957895 |
S | 367 | V367F | Gtc | Ttc | 66 | 66 | AY.33 | 0.004407 |
S | 367 | V367F | Gtc | Ttc | 59 | 59 | B.1 | 0.00054 |
S | 367 | V367F | Gtc | Ttc | 40 | 40 | B.1.1.384 | 0.952381 |
S | 367 | V367F | Gtc | Ttc | 38 | 38 | A | 0.014706 |
S | 367 | V367F | Gtc | Ttc | 30 | 30 | AY.25 | 0.00018 |
S | 367 | V367F | Gtc | Ttc | 26 | 26 | AY.43 | 0.000115 |
S | 367 | V367F | Gtc | Ttc | 24 | 24 | B.1.617.2 | 0.00009 |
S | 367 | V367F | Gtc | Ttc | 22 | 22 | B.1.1 | 0.000399 |
S | 367 | V367F | Gtc | Ttc | 20 | 20 | B | 0.002556 |
S | 367 | V367F | Gtc | Ttc | 19 | 19 | B.1.1.214 | 0.001054 |
S | 367 | V367F | Gtc | Ttc | 15 | 15 | AY.117 | 0.001268 |
S | 367 | V367F | Gtc | Ttc | 15 | 15 | B.1.526 | 0.000353 |
S | 367 | V367F | Gtc | Ttc | 15 | 15 | P.1 | 0.000236 |
S | 367 | V367F | Gtc | Ttc | 14 | 14 | AY.47 | 0.000435 |
S | 367 | V367F | Gtc | Ttc | 13 | 13 | AY.44 | 0.000079 |
S | 367 | V367F | Gtc | Ttc | 12 | 12 | C.37 | 0.001393 |
S | 367 | V367F | Gtc | Ttc | 11 | 11 | B.1.160 | 0.000343 |
S | 367 | V367F | Gtc | Ttc | 11 | 11 | B.1.596 | 0.000959 |
S | 367 | V367F | Gtc | Ttc | 10 | 10 | AY.102 | 0.000265 |
S | 367 | V367F | Gtc | Ttc | 10 | 10 | B.1.160.14 | 0.021186 |
S | 367 | V367F | Gtc | Ttc | 10 | 10 | B.1.221 | 0.00071 |
S | 367 | V367F | Gtc | Ttc | 9 | 9 | AY.3 | 0.00009 |
S | 367 | V367F | Gtc | Ttc | 9 | 9 | B.1.1.319 | 0.157895 |
S | 367 | V367F | Gtc | Ttc | 9 | 9 | B.1.351 | 0.000268 |
S | 367 | V367F | Gtc | Ttc | 9 | 9 | B.1.8 | 0.017751 |
S | 367 | V367F | Gtc | Ttc | 8 | 8 | AY.103 | 0.00005 |
S | 367 | V367F | Gtc | Ttc | 8 | 8 | AY.120 | 0.000297 |
S | 367 | V367F | Gtc | Ttc | 8 | 8 | AY.39 | 0.000198 |
S | 367 | V367F | Gtc | Ttc | 8 | 8 | B.1.429 | 0.000188 |
S | 367 | V367F | Gtc | Ttc | 7 | 7 | AY.4.2 | 0.000152 |
S | 367 | V367F | Gtc | Ttc | 7 | 7 | B.1.258.17 | 0.000728 |
S | 367 | V367F | Gtc | Ttc | 7 | 7 | B.1.427 | 0.000353 |
S | 367 | V367F | Gtc | Ttc | 7 | 7 | B.1.495 | 0.063636 |
S | 367 | V367F | Gtc | Ttc | 7 | 7 | B.23 | 0.020468 |
S | 367 | V367F | Gtc | Ttc | 6 | 6 | AY.16 | 0.002278 |
S | 367 | V367F | Gtc | Ttc | 6 | 6 | AY.68 | 0.001642 |
S | 367 | V367F | Gtc | Ttc | 6 | 6 | B.1.1.519 | 0.000238 |
S | 367 | V367F | Gtc | Ttc | 5 | 5 | AY.100 | 0.00023 |
S | 367 | V367F | Gtc | Ttc | 5 | 5 | AY.20 | 0.000194 |
S | 367 | V367F | Gtc | Ttc | 5 | 5 | AY.29 | 0.000079 |
S | 367 | V367F | Gtc | Ttc | 5 | 5 | B.1.1.174 | 0.016892 |
S | 367 | V367F | Gtc | Ttc | 5 | 5 | B.1.621 | 0.000443 |
S | 367 | V367F | Gtc | Ttc | 5 | 5 | B.15 | 0.087719 |
S | 367 | V367F | Gtc | Ttc | 5 | 5 | P.2 | 0.000933 |
S | 367 | V367F | Gtc | Ttc | 4 | 4 | A.25 | 0.072727 |
S | 367 | V367F | Gtc | Ttc | 4 | 4 | AY.5 | 0.000083 |
S | 367 | V367F | Gtc | Ttc | 4 | 4 | B.1.177 | 0.000053 |
S | 367 | V367F | Gtc | Ttc | 4 | 4 | B.1.177.32 | 0.005398 |
S | 367 | V367F | Gtc | Ttc | 4 | 4 | B.4.5 | 0.047619 |
S | 367 | V367F | Gtc | Ttc | 3 | 3 | A.1 | 0.000846 |
S | 367 | V367F | Gtc | Ttc | 3 | 3 | AY.1 | 0.001187 |
S | 367 | V367F | Gtc | Ttc | 3 | 3 | AY.45 | 0.000365 |
S | 367 | V367F | Gtc | Ttc | 3 | 3 | AY.70 | 0.000626 |
S | 367 | V367F | Gtc | Ttc | 3 | 3 | AY.9.2 | 0.00011 |
S | 367 | V367F | Gtc | Ttc | 3 | 3 | B.1.1.178 | 0.125 |
S | 367 | V367F | Gtc | Ttc | 3 | 3 | B.1.1.348 | 0.002389 |
S | 367 | V367F | Gtc | Ttc | 3 | 3 | B.1.1.434 | 0.001046 |
S | 367 | V367F | Gtc | Ttc | 3 | 3 | B.1.1.521 | 0.016043 |
S | 367 | V367F | Gtc | Ttc | 3 | 3 | B.1.177.21 | 0.000229 |
S | 367 | V367F | Gtc | Ttc | 3 | 3 | B.1.240 | 0.000647 |
S | 367 | V367F | Gtc | Ttc | 3 | 3 | B.1.36.31 | 0.005254 |
S | 367 | V367F | Gtc | Ttc | 3 | 3 | B.1.367 | 0.002377 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | AE.8 | 0.000978 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | AY.39.1 | 0.000079 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | AY.4.5 | 0.000215 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | AY.46.4 | 0.000329 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | AY.6 | 0.000082 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | AY.7.1 | 0.000225 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | AY.75 | 0.000112 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | AY.98 | 0.000158 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | B.1.1.220 | 0.003717 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | B.1.1.222 | 0.000408 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | B.1.1.37 | 0.000386 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | B.1.1.44 | 0.004819 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | B.1.1.63 | 0.000772 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | B.1.128 | 0.001271 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | B.1.177.77 | 0.001452 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | B.1.188 | 0.033333 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | B.1.206 | 0.001631 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | B.1.243 | 0.000139 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | B.1.258 | 0.000133 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | B.1.311 | 0.000549 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | B.1.333 | 0.021053 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | B.1.36.18 | 0.00084 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | B.1.36.29 | 0.001035 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | B.1.398 | 0.005952 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | B.1.459 | 0.008163 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | B.1.462 | 0.014493 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | B.1.521 | 0.00995 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | B.1.525 | 0.000226 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | B.1.595 | 0.000522 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | B.1.609 | 0.000959 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | B.40 | 0.000729 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | B.55 | 0.0059 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | C.16 | 0.002121 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | N.9 | 0.011905 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | Q.8 | 0.00033 |
S | 367 | V367F | Gtc | Ttc | 2 | 2 | R.1 | 0.00018 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | A.2 | 0.000662 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | A.2.2 | 0.001689 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | A.2.4 | 0.003367 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | A.5 | 0.001923 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | AY.118 | 0.000063 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | AY.120.2.1 | 0.000498 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | AY.14 | 0.000088 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | AY.19 | 0.00114 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | AY.23 | 0.00007 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | AY.29.1 | 0.000221 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | AY.46 | 0.000104 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | AY.53 | 0.000288 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | AY.84 | 0.000437 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | AY.85 | 0.000427 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | AY.9.1 | 0.000084 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | AY.92 | 0.000287 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | AY.94 | 0.000443 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | AY.98.1 | 0.000048 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | AY.99 | 0.001049 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | AY.99.1 | 0.001553 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | AZ.2 | 0.000821 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.1.1 | 0.000327 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.1.12 | 0.007463 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.1.132 | 0.014925 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.1.134 | 0.011364 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.1.139 | 0.022727 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.1.152 | 0.04 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.1.153 | 0.001095 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.1.157 | 0.000913 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.1.189 | 0.001513 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.1.207 | 0.001182 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.1.228 | 0.003049 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.1.241 | 0.00207 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.1.25 | 0.000569 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.1.291 | 0.000742 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.1.303 | 0.002762 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.1.311 | 0.000358 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.1.354 | 0.004386 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.1.369 | 0.000446 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.1.372 | 0.000689 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.1.39 | 0.00051 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.1.398 | 0.003226 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.1.419 | 0.007407 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.1.420 | 0.001006 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.1.432 | 0.001266 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.1.46 | 0.004367 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.1.522 | 0.017241 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.1.67 | 0.004566 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.1.70 | 0.000341 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.1.83 | 0.00271 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.110.3 | 0.000718 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.13 | 0.002375 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.169 | 0.014925 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.173 | 0.026316 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.177.17 | 0.000821 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.177.4 | 0.000211 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.177.73 | 0.000566 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.177.75 | 0.001041 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.177.81 | 0.000189 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.189 | 0.004292 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.205 | 0.02381 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.218 | 0.005155 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.22 | 0.001318 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.223 | 0.002778 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.225 | 0.015385 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.234 | 0.000132 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.237 | 0.004975 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.239 | 0.001221 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.258.14 | 0.00098 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.265 | 0.001271 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.298 | 0.002114 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.341 | 0.022727 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.349 | 0.000715 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.351.3 | 0.000876 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.36 | 0.000146 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.36.1 | 0.00114 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.36.17 | 0.000494 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.36.22 | 0.001208 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.36.24 | 0.006173 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.36.28 | 0.005747 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.361 | 0.001289 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.369 | 0.000285 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.393 | 0.028571 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.411 | 0.003704 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.422 | 0.000812 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.426 | 0.001009 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.446 | 0.02 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.448 | 0.002625 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.466.2 | 0.000391 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.468 | 0.005714 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.497 | 0.000315 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.523 | 0.002451 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.524 | 0.001406 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.540 | 0.009709 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.545 | 0.014493 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.564 | 0.000426 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.565 | 0.00081 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.576 | 0.000907 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.577 | 0.000687 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.1.602 | 0.006536 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.11 | 0.005128 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.3 | 0.000831 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.4 | 0.002208 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.6 | 0.00091 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | B.61 | 0.005747 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | C.35 | 0.000774 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | C.37.1 | 0.002618 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | P.1.14 | 0.000048 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | P.1.17 | 0.000162 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | Q.1 | 0.000126 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | Q.3 | 0.000145 |
S | 367 | V367F | Gtc | Ttc | 1 | 1 | Q.4 | 0.000455 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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