CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 362 | V362F | nonsyn | Gtt | Ttt | 817 | 817 | 1 | 22646-22648 | |
S | 362 | V362V | syn | gtT | gtC | 253 | 124 | 0.490119 | 22646-22648 | |
S | 362 | V362V | syn | gtT | gtA | 253 | 110 | 0.434783 | 22646-22648 | |
S | 362 | V362V | syn | gtT | gtG | 253 | 19 | 0.0750988 | 22646-22648 | |
S | 362 | V362L | nonsyn | Gtt | Ctt | 81 | 81 | 1 | 22646-22648 | |
S | 362 | V362I | nonsyn | Gtt | Att | 48 | 48 | 1 | 22646-22648 | |
S | 362 | V362del | del | GTT | --- | 48 | 48 | 1 | 22646-22648 | |
S | 362 | V362D | nonsyn | gTt | gAt | 15 | 14 | 0.933333 | 22646-22648 | |
S | 362 | V362D | nonsyn | gTT | gAC | 15 | 1 | 0.0666667 | 22646-22648 | |
S | 362 | V362A | nonsyn | gTt | gCt | 11 | 10 | 0.909091 | 22646-22648 | |
S | 362 | V362A | nonsyn | gTT | gCA | 11 | 1 | 0.0909091 | 22646-22648 | |
S | 362 | V362E | nonsyn | gTT | gAG | 10 | 8 | 0.8 | 22646-22648 | |
S | 362 | V362E | nonsyn | gTT | gAA | 10 | 2 | 0.2 | 22646-22648 | |
S | 362 | V362G | nonsyn | gTt | gGt | 3 | 3 | 1 | 22646-22648 | |
S | 362 | V362del1 | del | Gtt | -tt | 2 | 1 | 0.5 | 22646-22648 | |
S | 362 | V362del1 | del | gTt | g-t | 2 | 1 | 0.5 | 22646-22648 | |
S | 362 | V362H | nonsyn | GTt | CAt | 1 | 1 | 1 | 22646-22648 | |
S | 362 | V362Q | nonsyn | GTT | CAA | 1 | 1 | 1 | 22646-22648 | |
S | 362 | V362del2 | del | gTT | g-- | 1 | 1 | 1 | 22646-22648 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 362 | V362F | Gtt | Ttt | 817 | 817 | All | 0.000156 |
S | 362 | V362F | Gtt | Ttt | 279 | 279 | AY.5 | 0.005761 |
S | 362 | V362V | gtT | gtC | 124 | 253 | All | 0.000024 |
S | 362 | V362V | gtT | gtA | 110 | 253 | All | 0.000021 |
S | 362 | V362V | gtT | gtG | 19 | 253 | All | 0.000004 |
S | 362 | V362F | Gtt | Ttt | 129 | 129 | B.1.1.243 | 0.526531 |
S | 362 | V362F | Gtt | Ttt | 83 | 83 | AY.4 | 0.000129 |
S | 362 | V362L | Gtt | Ctt | 81 | 81 | All | 0.000015 |
S | 362 | V362V | gtT | gtA | 48 | 65 | AY.4 | 0.000075 |
S | 362 | V362V | gtT | gtC | 17 | 65 | AY.4 | 0.000026 |
S | 362 | V362F | Gtt | Ttt | 64 | 64 | B.1.1.7 | 0.000057 |
S | 362 | V362F | Gtt | Ttt | 58 | 58 | B.1.525 | 0.006563 |
S | 362 | V362L | Gtt | Ctt | 54 | 54 | AY.3 | 0.000537 |
S | 362 | V362I | Gtt | Att | 48 | 48 | All | 0.000009 |
S | 362 | V362del | GTT | --- | 48 | 48 | All | 0.000009 |
S | 362 | V362V | gtT | gtC | 28 | 28 | AY.46 | 0.002914 |
S | 362 | V362F | Gtt | Ttt | 27 | 27 | B.1.617.2 | 0.000102 |
S | 362 | V362F | Gtt | Ttt | 17 | 17 | AY.43 | 0.000075 |
S | 362 | V362V | gtT | gtC | 15 | 16 | AY.3 | 0.000149 |
S | 362 | V362V | gtT | gtA | 1 | 16 | AY.3 | 0.00001 |
S | 362 | V362D | gTt | gAt | 14 | 15 | All | 0.000003 |
S | 362 | V362D | gTT | gAC | 1 | 15 | All | 0 |
S | 362 | V362V | gtT | gtA | 14 | 14 | AY.75 | 0.000784 |
S | 362 | V362V | gtT | gtC | 13 | 13 | AY.103 | 0.000081 |
S | 362 | V362V | gtT | gtC | 9 | 12 | AY.43 | 0.00004 |
S | 362 | V362V | gtT | gtA | 2 | 12 | AY.43 | 0.000009 |
S | 362 | V362V | gtT | gtG | 1 | 12 | AY.43 | 0.000004 |
S | 362 | V362F | Gtt | Ttt | 12 | 12 | AY.44 | 0.000073 |
S | 362 | V362del | GTT | --- | 12 | 12 | B.1.1.7 | 0.000011 |
S | 362 | V362A | gTt | gCt | 10 | 11 | All | 0.000002 |
S | 362 | V362A | gTT | gCA | 1 | 11 | All | 0 |
S | 362 | V362E | gTT | gAG | 8 | 10 | All | 0.000002 |
S | 362 | V362E | gTT | gAA | 2 | 10 | All | 0 |
S | 362 | V362F | Gtt | Ttt | 10 | 10 | AY.103 | 0.000062 |
S | 362 | V362V | gtT | gtG | 7 | 10 | B.1.1.28 | 0.002179 |
S | 362 | V362V | gtT | gtA | 3 | 10 | B.1.1.28 | 0.000934 |
S | 362 | V362V | gtT | gtC | 9 | 10 | B.1.526 | 0.000212 |
S | 362 | V362V | gtT | gtG | 1 | 10 | B.1.526 | 0.000024 |
S | 362 | V362D | gTt | gAt | 9 | 9 | B.1.1.28 | 0.002801 |
S | 362 | V362E | gTT | gAG | 7 | 9 | B.1.1.28 | 0.002179 |
S | 362 | V362E | gTT | gAA | 2 | 9 | B.1.1.28 | 0.000622 |
S | 362 | V362L | Gtt | Ctt | 9 | 9 | B.1.1.7 | 0.000008 |
S | 362 | V362V | gtT | gtC | 4 | 8 | B.1.1.7 | 0.000004 |
S | 362 | V362V | gtT | gtA | 4 | 8 | B.1.1.7 | 0.000004 |
S | 362 | V362F | Gtt | Ttt | 7 | 7 | AY.26 | 0.000198 |
S | 362 | V362F | Gtt | Ttt | 7 | 7 | AY.46 | 0.000729 |
S | 362 | V362V | gtT | gtA | 7 | 7 | B.1.160 | 0.000218 |
S | 362 | V362F | Gtt | Ttt | 6 | 6 | AY.25 | 0.000036 |
S | 362 | V362V | gtT | gtA | 6 | 6 | B.1.1.301 | 0.007075 |
S | 362 | V362F | Gtt | Ttt | 6 | 6 | B.1.177 | 0.000079 |
S | 362 | V362V | gtT | gtA | 4 | 6 | B.1.177 | 0.000053 |
S | 362 | V362V | gtT | gtG | 1 | 6 | B.1.177 | 0.000013 |
S | 362 | V362V | gtT | gtC | 1 | 6 | B.1.177 | 0.000013 |
S | 362 | V362I | Gtt | Att | 5 | 5 | AY.4 | 0.000008 |
S | 362 | V362F | Gtt | Ttt | 5 | 5 | B.1 | 0.000046 |
S | 362 | V362V | gtT | gtA | 4 | 5 | B.1 | 0.000037 |
S | 362 | V362V | gtT | gtC | 1 | 5 | B.1 | 0.000009 |
S | 362 | V362L | Gtt | Ctt | 5 | 5 | B.1.617.2 | 0.000019 |
S | 362 | V362V | gtT | gtA | 5 | 5 | C.37 | 0.00058 |
S | 362 | V362I | Gtt | Att | 5 | 5 | P.1 | 0.000079 |
S | 362 | V362V | gtT | gtC | 3 | 4 | AY.25 | 0.000018 |
S | 362 | V362V | gtT | gtA | 1 | 4 | AY.25 | 0.000006 |
S | 362 | V362F | Gtt | Ttt | 4 | 4 | AY.60 | 0.003752 |
S | 362 | V362I | Gtt | Att | 4 | 4 | AY.85 | 0.001709 |
S | 362 | V362F | Gtt | Ttt | 4 | 4 | AY.98.1 | 0.000194 |
S | 362 | V362I | Gtt | Att | 4 | 4 | B.1.1.7 | 0.000004 |
S | 362 | V362del | GTT | --- | 4 | 4 | B.1.258 | 0.000266 |
S | 362 | V362F | Gtt | Ttt | 4 | 4 | B.1.36.36 | 0.002408 |
S | 362 | V362del | GTT | --- | 4 | 4 | B.1.617.2 | 0.000015 |
S | 362 | V362I | Gtt | Att | 4 | 4 | B.1.637 | 0.000292 |
S | 362 | V362G | gTt | gGt | 3 | 3 | All | 0.000001 |
S | 362 | V362F | Gtt | Ttt | 3 | 3 | AY.102 | 0.00008 |
S | 362 | V362F | Gtt | Ttt | 3 | 3 | AY.117 | 0.000254 |
S | 362 | V362F | Gtt | Ttt | 3 | 3 | AY.120 | 0.000112 |
S | 362 | V362V | gtT | gtC | 3 | 3 | AY.23 | 0.000209 |
S | 362 | V362F | Gtt | Ttt | 3 | 3 | AY.29 | 0.000047 |
S | 362 | V362F | Gtt | Ttt | 3 | 3 | AY.32 | 0.001597 |
S | 362 | V362V | gtT | gtG | 2 | 3 | AY.33 | 0.000134 |
S | 362 | V362V | gtT | gtC | 1 | 3 | AY.33 | 0.000067 |
S | 362 | V362I | Gtt | Att | 3 | 3 | AY.44 | 0.000018 |
S | 362 | V362F | Gtt | Ttt | 3 | 3 | AY.77 | 0.003382 |
S | 362 | V362del | GTT | --- | 3 | 3 | B.1 | 0.000027 |
S | 362 | V362F | Gtt | Ttt | 3 | 3 | B.1.1 | 0.000054 |
S | 362 | V362V | gtT | gtA | 3 | 3 | B.1.1.434 | 0.001046 |
S | 362 | V362A | gTt | gCt | 3 | 3 | B.1.1.7 | 0.000003 |
S | 362 | V362F | Gtt | Ttt | 3 | 3 | B.1.258.17 | 0.000312 |
S | 362 | V362F | Gtt | Ttt | 3 | 3 | B.1.351 | 0.000089 |
S | 362 | V362F | Gtt | Ttt | 3 | 3 | B.1.416.1 | 0.004687 |
S | 362 | V362I | Gtt | Att | 3 | 3 | B.1.429 | 0.000071 |
S | 362 | V362I | Gtt | Att | 3 | 3 | B.1.617.2 | 0.000011 |
S | 362 | V362V | gtT | gtG | 3 | 3 | R.1 | 0.00027 |
S | 362 | V362F | Gtt | Ttt | 2 | 2 | 0.111111 | |
S | 362 | V362del1 | Gtt | -tt | 1 | 2 | All | 0 |
S | 362 | V362del1 | gTt | g-t | 1 | 2 | All | 0 |
S | 362 | V362F | Gtt | Ttt | 2 | 2 | AY.100 | 0.000092 |
S | 362 | V362L | Gtt | Ctt | 2 | 2 | AY.102 | 0.000053 |
S | 362 | V362F | Gtt | Ttt | 2 | 2 | AY.114 | 0.000462 |
S | 362 | V362F | Gtt | Ttt | 2 | 2 | AY.119 | 0.000071 |
S | 362 | V362V | gtT | gtC | 2 | 2 | AY.20 | 0.000078 |
S | 362 | V362F | Gtt | Ttt | 2 | 2 | AY.34 | 0.000194 |
S | 362 | V362del | GTT | --- | 2 | 2 | AY.35 | 0.000466 |
S | 362 | V362V | gtT | gtG | 2 | 2 | AY.36 | 0.000296 |
S | 362 | V362F | Gtt | Ttt | 2 | 2 | AY.4.2 | 0.000043 |
S | 362 | V362V | gtT | gtA | 2 | 2 | AY.47 | 0.000062 |
S | 362 | V362I | Gtt | Att | 2 | 2 | AY.47 | 0.000062 |
S | 362 | V362F | Gtt | Ttt | 2 | 2 | AY.67 | 0.000929 |
S | 362 | V362F | Gtt | Ttt | 2 | 2 | AY.68 | 0.000547 |
S | 362 | V362I | Gtt | Att | 2 | 2 | AY.75 | 0.000112 |
S | 362 | V362F | Gtt | Ttt | 2 | 2 | AY.85 | 0.000854 |
S | 362 | V362del | GTT | --- | 2 | 2 | B.1.1 | 0.000036 |
S | 362 | V362D | gTt | gAt | 2 | 2 | B.1.1 | 0.000036 |
S | 362 | V362V | gtT | gtA | 1 | 2 | B.1.1 | 0.000018 |
S | 362 | V362V | gtT | gtG | 1 | 2 | B.1.1 | 0.000018 |
S | 362 | V362F | Gtt | Ttt | 2 | 2 | B.1.1.207 | 0.002364 |
S | 362 | V362V | gtT | gtA | 2 | 2 | B.1.1.25 | 0.001137 |
S | 362 | V362V | gtT | gtC | 2 | 2 | B.1.1.486 | 0.003155 |
S | 362 | V362V | gtT | gtC | 2 | 2 | B.1.177.83 | 0.002963 |
S | 362 | V362del | GTT | --- | 2 | 2 | B.1.2 | 0.000018 |
S | 362 | V362V | gtT | gtA | 2 | 2 | B.1.2 | 0.000018 |
S | 362 | V362F | Gtt | Ttt | 2 | 2 | B.1.2 | 0.000018 |
S | 362 | V362F | Gtt | Ttt | 2 | 2 | B.1.311 | 0.000549 |
S | 362 | V362F | Gtt | Ttt | 2 | 2 | B.1.429 | 0.000047 |
S | 362 | V362F | Gtt | Ttt | 2 | 2 | B.1.78 | 0.017094 |
S | 362 | V362F | Gtt | Ttt | 2 | 2 | C.37 | 0.000232 |
S | 362 | V362F | Gtt | Ttt | 2 | 2 | P.1 | 0.000032 |
S | 362 | V362F | Gtt | Ttt | 2 | 2 | P.5 | 0.027397 |
S | 362 | V362F | Gtt | Ttt | 1 | 1 | A | 0.000387 |
S | 362 | V362A | gTt | gCt | 1 | 1 | A | 0.000387 |
S | 362 | V362V | gtT | gtC | 1 | 1 | A.2.4 | 0.003367 |
S | 362 | V362I | Gtt | Att | 1 | 1 | AE.3 | 0.032258 |
S | 362 | V362Q | GTT | CAA | 1 | 1 | All | 0 |
S | 362 | V362H | GTt | CAt | 1 | 1 | All | 0 |
S | 362 | V362del2 | gTT | g-- | 1 | 1 | All | 0 |
S | 362 | V362del | GTT | --- | 1 | 1 | AY.107 | 0.000466 |
S | 362 | V362G | gTt | gGt | 1 | 1 | AY.109 | 0.00074 |
S | 362 | V362I | Gtt | Att | 1 | 1 | AY.113 | 0.000142 |
S | 362 | V362del | GTT | --- | 1 | 1 | AY.120 | 0.000037 |
S | 362 | V362del1 | Gtt | -tt | 1 | 1 | AY.121 | 0.000135 |
S | 362 | V362V | gtT | gtC | 1 | 1 | AY.121 | 0.000135 |
S | 362 | V362I | Gtt | Att | 1 | 1 | AY.14 | 0.000088 |
S | 362 | V362F | Gtt | Ttt | 1 | 1 | AY.20 | 0.000039 |
S | 362 | V362del | GTT | --- | 1 | 1 | AY.23 | 0.00007 |
S | 362 | V362L | Gtt | Ctt | 1 | 1 | AY.25 | 0.000006 |
S | 362 | V362I | Gtt | Att | 1 | 1 | AY.29 | 0.000016 |
S | 362 | V362I | Gtt | Att | 1 | 1 | AY.3 | 0.00001 |
S | 362 | V362F | Gtt | Ttt | 1 | 1 | AY.3 | 0.00001 |
S | 362 | V362F | Gtt | Ttt | 1 | 1 | AY.33 | 0.000067 |
S | 362 | V362L | Gtt | Ctt | 1 | 1 | AY.39 | 0.000025 |
S | 362 | V362I | Gtt | Att | 1 | 1 | AY.39 | 0.000025 |
S | 362 | V362del | GTT | --- | 1 | 1 | AY.4 | 0.000002 |
S | 362 | V362I | Gtt | Att | 1 | 1 | AY.4.2 | 0.000022 |
S | 362 | V362F | Gtt | Ttt | 1 | 1 | AY.4.4 | 0.000409 |
S | 362 | V362del | GTT | --- | 1 | 1 | AY.4.5 | 0.000107 |
S | 362 | V362V | gtT | gtC | 1 | 1 | AY.4.5 | 0.000107 |
S | 362 | V362F | Gtt | Ttt | 1 | 1 | AY.42 | 0.00004 |
S | 362 | V362L | Gtt | Ctt | 1 | 1 | AY.42 | 0.00004 |
S | 362 | V362del | GTT | --- | 1 | 1 | AY.43 | 0.000004 |
S | 362 | V362I | Gtt | Att | 1 | 1 | AY.43 | 0.000004 |
S | 362 | V362A | gTt | gCt | 1 | 1 | AY.43 | 0.000004 |
S | 362 | V362Q | GTT | CAA | 1 | 1 | AY.44 | 0.000006 |
S | 362 | V362L | Gtt | Ctt | 1 | 1 | AY.44 | 0.000006 |
S | 362 | V362V | gtT | gtC | 1 | 1 | AY.44 | 0.000006 |
S | 362 | V362V | gtT | gtC | 1 | 1 | AY.45 | 0.000122 |
S | 362 | V362del | GTT | --- | 1 | 1 | AY.46 | 0.000104 |
S | 362 | V362F | Gtt | Ttt | 1 | 1 | AY.46.2 | 0.000635 |
S | 362 | V362F | Gtt | Ttt | 1 | 1 | AY.47 | 0.000031 |
S | 362 | V362V | gtT | gtC | 1 | 1 | AY.5 | 0.000021 |
S | 362 | V362V | gtT | gtC | 1 | 1 | AY.5.1 | 0.003759 |
S | 362 | V362F | Gtt | Ttt | 1 | 1 | AY.5.4 | 0.000277 |
S | 362 | V362A | gTt | gCt | 1 | 1 | AY.55 | 0.000917 |
S | 362 | V362F | Gtt | Ttt | 1 | 1 | AY.58 | 0.000907 |
S | 362 | V362F | Gtt | Ttt | 1 | 1 | AY.61 | 0.000105 |
S | 362 | V362V | gtT | gtC | 1 | 1 | AY.61 | 0.000105 |
S | 362 | V362A | gTt | gCt | 1 | 1 | AY.67 | 0.000464 |
S | 362 | V362del | GTT | --- | 1 | 1 | AY.72 | 0.001361 |
S | 362 | V362L | Gtt | Ctt | 1 | 1 | AY.75 | 0.000056 |
S | 362 | V362F | Gtt | Ttt | 1 | 1 | AY.75 | 0.000056 |
S | 362 | V362I | Gtt | Att | 1 | 1 | AY.75.1 | 0.00018 |
S | 362 | V362del | GTT | --- | 1 | 1 | AY.75.1 | 0.00018 |
S | 362 | V362del | GTT | --- | 1 | 1 | AY.9 | 0.000068 |
S | 362 | V362F | Gtt | Ttt | 1 | 1 | AY.9 | 0.000068 |
S | 362 | V362I | Gtt | Att | 1 | 1 | AY.9.1 | 0.000084 |
S | 362 | V362F | Gtt | Ttt | 1 | 1 | AY.9.2 | 0.000037 |
S | 362 | V362L | Gtt | Ctt | 1 | 1 | AY.91 | 0.00073 |
S | 362 | V362D | gTt | gAt | 1 | 1 | AY.99.2 | 0.000092 |
S | 362 | V362del1 | gTt | g-t | 1 | 1 | B.1 | 0.000009 |
S | 362 | V362A | gTt | gCt | 1 | 1 | B.1 | 0.000009 |
S | 362 | V362H | GTt | CAt | 1 | 1 | B.1.1 | 0.000018 |
S | 362 | V362L | Gtt | Ctt | 1 | 1 | B.1.1 | 0.000018 |
S | 362 | V362G | gTt | gGt | 1 | 1 | B.1.1 | 0.000018 |
S | 362 | V362A | gTt | gCt | 1 | 1 | B.1.1 | 0.000018 |
S | 362 | V362V | gtT | gtC | 1 | 1 | B.1.1.1 | 0.000327 |
S | 362 | V362I | Gtt | Att | 1 | 1 | B.1.1.121 | 0.002427 |
S | 362 | V362F | Gtt | Ttt | 1 | 1 | B.1.1.192 | 0.002309 |
S | 362 | V362F | Gtt | Ttt | 1 | 1 | B.1.1.309 | 0.005848 |
S | 362 | V362del | GTT | --- | 1 | 1 | B.1.1.315 | 0.008475 |
S | 362 | V362F | Gtt | Ttt | 1 | 1 | B.1.1.39 | 0.00051 |
S | 362 | V362A | gTt | gCt | 1 | 1 | B.1.1.519 | 0.00004 |
S | 362 | V362F | Gtt | Ttt | 1 | 1 | B.1.1.519 | 0.00004 |
S | 362 | V362V | gtT | gtC | 1 | 1 | B.1.1.519 | 0.00004 |
S | 362 | V362G | gTt | gGt | 1 | 1 | B.1.1.523 | 0.001563 |
S | 362 | V362del2 | gTT | g-- | 1 | 1 | B.1.1.7 | 0.000001 |
S | 362 | V362F | Gtt | Ttt | 1 | 1 | B.1.160 | 0.000031 |
S | 362 | V362L | Gtt | Ctt | 1 | 1 | B.1.160 | 0.000031 |
S | 362 | V362del | GTT | --- | 1 | 1 | B.1.177 | 0.000013 |
S | 362 | V362L | Gtt | Ctt | 1 | 1 | B.1.177.15 | 0.000631 |
S | 362 | V362del | GTT | --- | 1 | 1 | B.1.177.18 | 0.00116 |
S | 362 | V362F | Gtt | Ttt | 1 | 1 | B.1.177.32 | 0.00135 |
S | 362 | V362del | GTT | --- | 1 | 1 | B.1.177.50 | 0.004695 |
S | 362 | V362F | Gtt | Ttt | 1 | 1 | B.1.177.56 | 0.000668 |
S | 362 | V362V | gtT | gtA | 1 | 1 | B.1.241 | 0.000812 |
S | 362 | V362del | GTT | --- | 1 | 1 | B.1.242 | 0.018868 |
S | 362 | V362I | Gtt | Att | 1 | 1 | B.1.243 | 0.00007 |
S | 362 | V362F | Gtt | Ttt | 1 | 1 | B.1.252 | 0.006623 |
S | 362 | V362V | gtT | gtC | 1 | 1 | B.1.258.14 | 0.00098 |
S | 362 | V362I | Gtt | Att | 1 | 1 | B.1.36 | 0.000146 |
S | 362 | V362L | Gtt | Ctt | 1 | 1 | B.1.369 | 0.000285 |
S | 362 | V362del | GTT | --- | 1 | 1 | B.1.409 | 0.000781 |
S | 362 | V362del | GTT | --- | 1 | 1 | B.1.446 | 0.02 |
S | 362 | V362D | gTT | gAC | 1 | 1 | B.1.466.2 | 0.000391 |
S | 362 | V362F | Gtt | Ttt | 1 | 1 | B.1.466.2 | 0.000391 |
S | 362 | V362del | GTT | --- | 1 | 1 | B.1.525 | 0.000113 |
S | 362 | V362F | Gtt | Ttt | 1 | 1 | B.1.539 | 0.017544 |
S | 362 | V362F | Gtt | Ttt | 1 | 1 | B.1.564 | 0.000426 |
S | 362 | V362F | Gtt | Ttt | 1 | 1 | B.1.596 | 0.000087 |
S | 362 | V362F | Gtt | Ttt | 1 | 1 | B.1.596.1 | 0.009346 |
S | 362 | V362F | Gtt | Ttt | 1 | 1 | B.1.602 | 0.006536 |
S | 362 | V362V | gtT | gtC | 1 | 1 | B.1.617.2 | 0.000004 |
S | 362 | V362A | gTT | gCA | 1 | 1 | B.1.617.2 | 0.000004 |
S | 362 | V362del | GTT | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 362 | V362F | Gtt | Ttt | 1 | 1 | B.1.621 | 0.000089 |
S | 362 | V362V | gtT | gtC | 1 | 1 | B.40 | 0.000364 |
S | 362 | V362F | Gtt | Ttt | 1 | 1 | B.6 | 0.00091 |
S | 362 | V362D | gTt | gAt | 1 | 1 | B.6.6 | 0.000889 |
S | 362 | V362V | gtT | gtC | 1 | 1 | P.1.12 | 0.000484 |
S | 362 | V362L | Gtt | Ctt | 1 | 1 | P.1.14 | 0.000048 |
S | 362 | V362E | gTT | gAG | 1 | 1 | P.2 | 0.000187 |
S | 362 | V362D | gTt | gAt | 1 | 1 | P.2 | 0.000187 |
S | 362 | V362V | gtT | gtG | 1 | 1 | P.2 | 0.000187 |
S | 362 | V362F | Gtt | Ttt | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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