CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 36

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S36V36FnonsynGttTtt822282200.99975721668-21670
S36V36FnonsynGtTTtC822220.0002432521668-21670
S36V36InonsynGttAtt209209121668-21670
S36V36VsyngtTgtC122960.78688521668-21670
S36V36VsyngtTgtG122220.18032821668-21670
S36V36VsyngtTgtA12240.032786921668-21670
S36V36deldelGTT---8585121668-21670
S36V36AnonsyngTtgCt5353121668-21670
S36V36LnonsynGttCtt25240.9621668-21670
S36V36LnonsynGtTCtC2510.0421668-21670
S36V36del1delGtt-tt840.521668-21670
S36V36del1delgTtg-t820.2521668-21670
S36V36del1delGTT-NN810.12521668-21670
S36V36del1delgtTgt-810.12521668-21670
S36V36GnonsyngTtgGt33121668-21670
S36V36SnonsynGTtAGt22121668-21670
S36V36DnonsyngTtgAt210.521668-21670
S36V36DnonsyngTTgAC210.521668-21670
S36V36HnonsynGTtCAt210.521668-21670
S36V36HnonsynGTTCAC210.521668-21670
S36V36del2delgTTg--11121668-21670

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S36V36FGttTtt82208222All0.001572
S36V36FGtTTtC28222All0
S36V36FGttTtt66136613AY.4.2.10.98525
S36V36FGttTtt860862AY.4.20.018652
S36V36FGtTTtC2862AY.4.20.000043
S36V36FGttTtt267267B.1.1.70.000239
S36V36IGttAtt209209All0.00004
S36V36VgtTgtC96122All0.000018
S36V36VgtTgtG22122All0.000004
S36V36VgtTgtA4122All0.000001
S36V36FGttTtt9494B.1.617.20.000354
S36V36delGTT---8585All0.000016
S36V36FGttTtt6969AY.40.000107
S36V36FGttTtt5858AY.1030.00036
S36V36VgtTgtC5656B.1.1.70.00005
S36V36AgTtgCt5353All0.00001
S36V36IGttAtt3232AY.40.00005
S36V36FGttTtt3131AY.390.000766
S36V36IGttAtt3030B.1.1.70.000027
S36V36IGttAtt2929AY.430.000128
S36V36LGttCtt2425All0.000005
S36V36LGtTCtC125All0
S36V36FGttTtt2323AY.430.000102
S36V36FGttTtt2020AY.440.000122
S36V36delGTT---2020B.1.1.70.000018
S36V36IGttAtt2020B.1.258.110.007927
S36V36AgTtgCt1515B.1.1.70.000013
S36V36FGttTtt1313AY.930.00355
S36V36FGttTtt1212AY.4.50.00129
S36V36FGttTtt1212AY.420.000483
S36V36VgtTgtG1112B.1.10.0002
S36V36VgtTgtA112B.1.10.000018
S36V36IGttAtt1111AY.440.000067
S36V36FGttTtt1010AY.260.000283
S36V36LGttCtt1010B.1.1.70.000009
S36V36VgtTgtC59AY.40.000008
S36V36VgtTgtG49AY.40.000006
S36V36del1Gtt-tt48All0.000001
S36V36del1gTtg-t28All0
S36V36del1GTT-NN18All0
S36V36del1gtTgt-18All0
S36V36FGttTtt88AY.290.000126
S36V36AgTtgCt88AY.430.000035
S36V36delGTT---88B.1.1770.000105
S36V36FGttTtt77AY.1000.000322
S36V36IGttAtt77AY.250.000042
S36V36delGTT---77AY.430.000031
S36V36AgTtgCt77AY.60.000288
S36V36IGttAtt77B.1.2430.000487
S36V36IGttAtt77B.1.617.20.000026
S36V36FGttTtt66AY.1020.000159
S36V36FGttTtt66AY.39.10.000238
S36V36FGttTtt66B.1.1770.000079
S36V36VgtTgtC66B.1.617.20.000023
S36V36FGttTtt55AY.230.000349
S36V36delGTT---55AY.330.000334
S36V36delGTT---55AY.40.000008
S36V36FGttTtt55B.10.000046
S36V36IGttAtt55B.1.3510.000149
S36V36FGttTtt44AY.100.00212
S36V36FGttTtt44AY.1190.000141
S36V36FGttTtt44AY.1200.000149
S36V36FGttTtt44AY.200.000155
S36V36FGttTtt44AY.250.000024
S36V36FGttTtt44AY.30.00004
S36V36AgTtgCt44AY.39.10.000158
S36V36AgTtgCt44AY.40.000006
S36V36IGttAtt44AY.400.003857
S36V36VgtTgtC34AY.440.000018
S36V36VgtTgtG14AY.440.000006
S36V36FGttTtt44B.1.20.000035
S36V36IGttAtt44B.1.3610.005155
S36V36LGttCtt230.111111
S36V36LGtTCtC130.055556
S36V36GgTtgGt33All0.000001
S36V36delGTT---33AY.1020.00008
S36V36FGttTtt33AY.1210.000406
S36V36IGttAtt33AY.30.00003
S36V36FGttTtt33AY.340.000291
S36V36IGttAtt33AY.390.000074
S36V36FGttTtt33AY.480.001395
S36V36IGttAtt33AY.50.000062
S36V36FGttTtt33AY.610.000314
S36V36IGttAtt33AY.7.20.001678
S36V36IGttAtt33AY.98.10.000145
S36V36FGttTtt33B.1.177.210.000229
S36V36IGttAtt33B.1.5260.000071
S36V36AgTtgCt33B.1.617.20.000011
S36V36VgtTgtC33P.10.000047
S36V36DgTtgAt120.055556
S36V36HGTtCAt120.055556
S36V36DgTTgAC120.055556
S36V36HGTTCAC120.055556
S36V36SGTtAGt22All0
S36V36DgTtgAt12All0
S36V36DgTTgAC12All0
S36V36HGTTCAC12All0
S36V36HGTtCAt12All0
S36V36delGTT---22AY.1010.000981
S36V36VgtTgtC12AY.1020.000027
S36V36VgtTgtA12AY.1020.000027
S36V36IGttAtt22AY.1030.000012
S36V36AgTtgCt22AY.1030.000012
S36V36FGttTtt22AY.1080.002205
S36V36FGttTtt22AY.1160.000574
S36V36IGttAtt22AY.1180.000125
S36V36VgtTgtC22AY.16.10.00094
S36V36VgtTgtC12AY.190.00114
S36V36VgtTgtG12AY.190.00114
S36V36IGttAtt22AY.200.000078
S36V36FGttTtt22AY.270.000129
S36V36IGttAtt22AY.290.000032
S36V36delGTT---22AY.30.00002
S36V36delGTT---22AY.34.10.00102
S36V36LGttCtt22AY.40.000003
S36V36delGTT---22AY.420.00008
S36V36VgtTgtC22AY.430.000009
S36V36LGttCtt22AY.440.000012
S36V36AgTtgCt22AY.440.000012
S36V36IGttAtt22AY.450.000243
S36V36IGttAtt22AY.470.000062
S36V36VgtTgtC22AY.610.00021
S36V36IGttAtt22AY.750.000112
S36V36FGttTtt22AY.9.10.000167
S36V36FGttTtt22AY.940.000885
S36V36IGttAtt22B.10.000018
S36V36delGTT---22B.10.000018
S36V36delGTT---22B.1.10.000036
S36V36delGTT---22B.1.1.3110.000716
S36V36LGttCtt22B.1.1770.000026
S36V36VgtTgtG12B.1.20.000009
S36V36VgtTgtA12B.1.20.000009
S36V36VgtTgtC22B.1.4270.000101
S36V36FGttTtt22B.1.6090.000959
S36V36FGttTtt22P.10.000032
S36V36FGttTtt22P.1.160.000748
S36V36VgtTgtC110.055556
S36V36AgTtgCt11A.20.000662
S36V36SGTtAGt11A.20.000662
S36V36del2gTTg--11All0
S36V36delGTT---11AY.1000.000046
S36V36IGttAtt11AY.1000.000046
S36V36FGttTtt11AY.1010.00049
S36V36IGttAtt11AY.1020.000027
S36V36del1GTT-NN11AY.1020.000027
S36V36VgtTgtC11AY.1030.000006
S36V36del1Gtt-tt11AY.1030.000006
S36V36LGttCtt11AY.1030.000006
S36V36delGTT---11AY.1030.000006
S36V36delGTT---11AY.1080.001103
S36V36FGttTtt11AY.1130.000142
S36V36FGttTtt11AY.1150.005208
S36V36FGttTtt11AY.116.10.000311
S36V36VgtTgtC11AY.1210.000135
S36V36VgtTgtC11AY.200.000039
S36V36AgTtgCt11AY.200.000039
S36V36IGttAtt11AY.23.10.000417
S36V36delGTT---11AY.260.000028
S36V36IGttAtt11AY.260.000028
S36V36FGttTtt11AY.29.10.000221
S36V36AgTtgCt11AY.30.00001
S36V36del1gTtg-t11AY.3.10.000085
S36V36del1Gtt-tt11AY.330.000067
S36V36VgtTgtC11AY.330.000067
S36V36FGttTtt11AY.34.10.00051
S36V36VgtTgtC11AY.390.000025
S36V36VgtTgtC11AY.39.10.00004
S36V36AgTtgCt11AY.4.50.000107
S36V36IGttAtt11AY.4.50.000107
S36V36delGTT---11AY.4.50.000107
S36V36FGttTtt11AY.450.000122
S36V36FGttTtt11AY.46.50.000198
S36V36delGTT---11AY.46.60.000072
S36V36FGttTtt11AY.470.000031
S36V36FGttTtt11AY.50.000021
S36V36delGTT---11AY.50.000021
S36V36FGttTtt11AY.5.30.000337
S36V36FGttTtt11AY.5.40.000277
S36V36FGttTtt11AY.540.000095
S36V36FGttTtt11AY.550.000917
S36V36VgtTgtC11AY.60.000041
S36V36delGTT---11AY.600.000938
S36V36IGttAtt11AY.650.000533
S36V36delGTT---11AY.680.000274
S36V36FGttTtt11AY.680.000274
S36V36FGttTtt11AY.700.000209
S36V36FGttTtt11AY.710.000475
S36V36LGttCtt11AY.710.000475
S36V36FGttTtt11AY.750.000056
S36V36FGttTtt11AY.75.10.00018
S36V36FGttTtt11AY.840.000437
S36V36FGttTtt11AY.90.000068
S36V36IGttAtt11AY.9.10.000084
S36V36del1gTtg-t11AY.9.20.000037
S36V36IGttAtt11AY.980.000079
S36V36FGttTtt11AY.990.001049
S36V36IGttAtt11AY.99.20.000092
S36V36FGttTtt11B0.000128
S36V36VgtTgtC11B.10.000009
S36V36GgTtgGt11B.10.000009
S36V36FGttTtt11B.1.10.000018
S36V36IGttAtt11B.1.1.2220.000204
S36V36LGttCtt11B.1.1.280.000311
S36V36SGTtAGt11B.1.1.3060.000438
S36V36delGTT---11B.1.1.3060.000438
S36V36AgTtgCt11B.1.1.4160.000905
S36V36VgtTgtG11B.1.1.5190.00004
S36V36FGttTtt11B.1.1.5190.00004
S36V36del2gTTg--11B.1.1.70.000001
S36V36delGTT---11B.1.1.700.000341
S36V36IGttAtt11B.1.1770.000013
S36V36VgtTgtG11B.1.1770.000013
S36V36IGttAtt11B.1.177.140.006098
S36V36delGTT---11B.1.177.170.000821
S36V36IGttAtt11B.1.177.450.000381
S36V36FGttTtt11B.1.177.570.000281
S36V36IGttAtt11B.1.177.650.000665
S36V36delGTT---11B.1.177.70.000165
S36V36delGTT---11B.1.177.830.001481
S36V36LGttCtt11B.1.177.90.001332
S36V36delGTT---11B.1.1790.003759
S36V36IGttAtt11B.1.20.000009
S36V36delGTT---11B.1.20.000009
S36V36AgTtgCt11B.1.20.000009
S36V36LGttCtt11B.1.2210.000071
S36V36VgtTgtC11B.1.2390.001221
S36V36VgtTgtC11B.1.2430.00007
S36V36IGttAtt11B.1.2580.000067
S36V36delGTT---11B.1.2580.000067
S36V36FGttTtt11B.1.2790.000514
S36V36del1gtTgt-11B.1.3110.000275
S36V36FGttTtt11B.1.3200.001245
S36V36FGttTtt11B.1.3460.001311
S36V36FGttTtt11B.1.3510.00003
S36V36AgTtgCt11B.1.3750.00082
S36V36GgTtgGt11B.1.4270.00005
S36V36VgtTgtC11B.1.4290.000024
S36V36delGTT---11B.1.4700.001404
S36V36AgTtgCt11B.1.5250.000113
S36V36IGttAtt11B.1.5290.055556
S36V36FGttTtt11B.1.5820.000491
S36V36FGttTtt11B.1.5960.000087
S36V36FGttTtt11B.1.6000.005848
S36V36del1Gtt-tt11B.1.617.10.000129
S36V36VgtTgtG11B.1.617.10.000129
S36V36GgTtgGt11B.1.617.20.000004
S36V36delGTT---11B.1.617.20.000004
S36V36delGTT---11B.1.6200.000946
S36V36delGTT---11B.1.6210.000089
S36V36VgtTgtA11B.1.621.10.000506
S36V36VgtTgtG11B.1.6260.005714
S36V36FGttTtt11B.1.6370.000073
S36V36del1Gtt-tt11B.1.780.008547
S36V36FGttTtt11C.370.000116
S36V36IGttAtt11C.370.000116
S36V36FGttTtt11D.20.000075
S36V36LGttCtt11P.10.000016
S36V36IGttAtt11P.10.000016
S36V36delGTT---11Q.10.000126
S36V36delGTT---11Q.70.001111
S36V36VgtTgtC11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.