CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 357

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S357R357KnonsynaGaaAa222122040.99234622631-22633
S357R357KnonsynaGAaAG2221170.0076542122631-22633
S357R357RsynagAagG2221550.69819822631-22633
S357R357RsynAgaCga222630.28378422631-22633
S357R357RsynAgACgG22220.0090090122631-22633
S357R357RsynAgACgT22210.004504522631-22633
S357R357RsynAgACgC22210.004504522631-22633
S357R357InonsynaGaaTa65590.90769222631-22633
S357R357InonsynaGAaTT6540.061538522631-22633
S357R357InonsynaGAaTC6520.030769222631-22633
S357R357deldelAGA---4848122631-22633
S357R357GnonsynAgaGga48300.62522631-22633
S357R357GnonsynAgAGgG48120.2522631-22633
S357R357GnonsynAgAGgT4860.12522631-22633
S357R357XnonsynAgaTga33170.51515222631-22633
S357R357XnonsynAGaTAa3390.27272722631-22633
S357R357XnonsynAGATAG3370.21212122631-22633
S357R357EnonsynAGaGAa28160.57142922631-22633
S357R357EnonsynAGAGAG28120.42857122631-22633
S357R357SnonsynagAagT19130.68421122631-22633
S357R357SnonsynagAagC1940.21052622631-22633
S357R357SnonsynAGaTCa1910.052631622631-22633
S357R357SnonsynAGATCG1910.052631622631-22633
S357R357LnonsynAGaTTa1760.35294122631-22633
S357R357LnonsynAGATTG1750.29411822631-22633
S357R357LnonsynAGaCTa1720.11764722631-22633
S357R357LnonsynAGACTG1720.11764722631-22633
S357R357LnonsynAGACTT1710.058823522631-22633
S357R357LnonsynAGACTC1710.058823522631-22633
S357R357TnonsynaGaaCa16130.812522631-22633
S357R357TnonsynaGAaCG1630.187522631-22633
S357R357WnonsynAgATgG1010122631-22633
S357R357CnonsynAgATgT960.66666722631-22633
S357R357CnonsynAgATgC930.33333322631-22633
S357R357VnonsynAGaGTa840.522631-22633
S357R357VnonsynAGAGTT820.2522631-22633
S357R357VnonsynAGAGTG820.2522631-22633
S357R357NnonsynaGAaAT760.85714322631-22633
S357R357NnonsynaGAaAC710.14285722631-22633
S357R357MnonsynaGAaTG66122631-22633
S357R357YnonsynAGATAT650.83333322631-22633
S357R357AnonsynAGaGCa630.522631-22633
S357R357AnonsynAGAGCG630.522631-22633
S357R357YnonsynAGATAC610.16666722631-22633
S357R357del1delagAag-520.422631-22633
S357R357del1delaGaa-a510.222631-22633
S357R357del1delaGAa-C510.222631-22633
S357R357del1delAGA-NN510.222631-22633
S357R357DnonsynAGAGAT44122631-22633
S357R357FnonsynAGATTT430.7522631-22633
S357R357QnonsynAGaCAa420.522631-22633
S357R357QnonsynAGACAG420.522631-22633
S357R357FnonsynAGATTC410.2522631-22633
S357R357HnonsynAGACAT210.522631-22633
S357R357HnonsynAGACAC210.522631-22633

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S357R357KaGaaAa22042221All0.000422
S357R357KaGAaAG172221All0.000003
S357R357KaGaaAa19251925B.1.1.1760.845782
S357R357RagAagG155222All0.00003
S357R357RAgaCga63222All0.000012
S357R357RAgACgG2222All0
S357R357RAgACgC1222All0
S357R357RAgACgT1222All0
S357R357KaGaaAa8080AY.1030.000497
S357R357IaGaaTa5965All0.000011
S357R357IaGAaTT465All0.000001
S357R357IaGAaTC265All0
S357R357RagAagG4449B.1.1.70.000039
S357R357RAgaCga549B.1.1.70.000004
S357R357delAGA---4848All0.000009
S357R357GAgaGga3048All0.000006
S357R357GAgAGgG1248All0.000002
S357R357GAgAGgT648All0.000001
S357R357KaGaaAa3636B.1.1.70.000032
S357R357KaGaaAa2334B.10.000211
S357R357KaGAaAG1134B.10.000101
S357R357XAgaTga1733All0.000003
S357R357XAGaTAa933All0.000002
S357R357XAGATAG733All0.000001
S357R357EAGaGAa1628All0.000003
S357R357EAGAGAG1228All0.000002
S357R357RAgaCga1427AY.440.000085
S357R357RagAagG1327AY.440.000079
S357R357GAgaGga1525B.10.000137
S357R357GAgAGgG825B.10.000073
S357R357GAgAGgT225B.10.000018
S357R357RagAagG1420B.10.000128
S357R357RAgaCga220B.10.000018
S357R357RAgACgG220B.10.000018
S357R357RAgACgT120B.10.000009
S357R357RAgACgC120B.10.000009
S357R357SagAagT1319All0.000002
S357R357SagAagC419All0.000001
S357R357SAGATCG119All0
S357R357SAGaTCa119All0
S357R357EAGaGAa1119B.10.000101
S357R357XAgaTga819B.10.000073
S357R357EAGAGAG819B.10.000073
S357R357XAGaTAa619B.10.000055
S357R357XAGATAG519B.10.000046
S357R357RagAagG1119B.1.617.20.000041
S357R357RAgaCga819B.1.617.20.00003
S357R357RAgaCga1818AY.430.00008
S357R357LAGaTTa617All0.000001
S357R357LAGATTG517All0.000001
S357R357LAGACTG217All0
S357R357LAGaCTa217All0
S357R357LAGACTT117All0
S357R357LAGACTC117All0
S357R357TaGaaCa1316All0.000002
S357R357TaGAaCG316All0.000001
S357R357KaGaaAa1616B.1.4270.000808
S357R357delAGA---1515B.1.1.70.000013
S357R357RagAagG814AY.40.000012
S357R357RAgaCga614AY.40.000009
S357R357IaGaaTa1214B.10.00011
S357R357IaGAaTT114B.10.000009
S357R357IaGAaTC114B.10.000009
S357R357LAGATTG312B.10.000027
S357R357LAGaTTa312B.10.000027
S357R357LAGaCTa212B.10.000018
S357R357LAGACTG212B.10.000018
S357R357LAGACTT112B.10.000009
S357R357LAGACTC112B.10.000009
S357R357KaGaaAa1212B.1.4290.000282
S357R357KaGaaAa1011B.1.20.000088
S357R357KaGAaAG111B.1.20.000009
S357R357RagAagG1111B.1.4780.129412
S357R357WAgATgG1010All0.000002
S357R357CAgATgT69All0.000001
S357R357CAgATgC39All0.000001
S357R357KaGaaAa99B.1.617.20.000034
S357R357VAGaGTa48All0.000001
S357R357VAGAGTG28All0
S357R357VAGAGTT28All0
S357R357KaGaaAa88B.1.621.10.004047
S357R357NaGAaAT67All0.000001
S357R357NaGAaAC17All0
S357R357KaGaaAa77AS.10.066667
S357R357WAgATgG77B.10.000064
S357R357TaGaaCa47B.10.000037
S357R357TaGAaCG37B.10.000027
S357R357SagAagT37B.10.000027
S357R357SagAagC27B.10.000018
S357R357SAGaTCa17B.10.000009
S357R357SAGATCG17B.10.000009
S357R357MaGAaTG66All0.000001
S357R357YAGATAT56All0.000001
S357R357AAGAGCG36All0.000001
S357R357AAGaGCa36All0.000001
S357R357YAGATAC16All0
S357R357RagAagG66AY.390.000148
S357R357AAGAGCG36B.10.000027
S357R357AAGaGCa36B.10.000027
S357R357del1agAag-25All0
S357R357del1AGA-NN15All0
S357R357del1aGaa-a15All0
S357R357del1aGAa-C15All0
S357R357KaGaaAa55AY.430.000022
S357R357KaGaaAa55AY.46.20.003177
S357R357DAGAGAT44All0.000001
S357R357FAGATTT34All0.000001
S357R357QAGaCAa24All0
S357R357QAGACAG24All0
S357R357FAGATTC14All0
S357R357TaGaaCa44AY.1110.000733
S357R357IaGaaTa44AY.40.000006
S357R357KaGaaAa44AY.46.10.004107
S357R357MaGAaTG44B.10.000037
S357R357CAgATgT24B.10.000018
S357R357CAgATgC24B.10.000018
S357R357QAGACAG24B.10.000018
S357R357QAGaCAa24B.10.000018
S357R357delAGA---44B.1.2580.000266
S357R357KaGAaAG24B.1.2580.000133
S357R357GAgaGga24B.1.2580.000133
S357R357KaGaaAa24B.1.2580.000133
S357R357GAgAGgT14B.1.2580.000067
S357R357GAgAGgG14B.1.2580.000067
S357R357IaGaaTa44B.1.617.20.000015
S357R357GAgaGga230.111111
S357R357GAgAGgT130.055556
S357R357RagAagG33AY.1010.001471
S357R357KaGaaAa33AY.200.000117
S357R357delAGA---33B.10.000027
S357R357YAGATAT23B.10.000018
S357R357NaGAaAT23B.10.000018
S357R357YAGATAC13B.10.000009
S357R357NaGAaAC13B.10.000009
S357R357SagAagT33B.1.1.70.000003
S357R357IaGaaTa33B.1.1.70.000003
S357R357TaGaaCa33B.1.1.70.000003
S357R357KaGaaAa23B.1.1770.000026
S357R357GAgaGga23B.1.1770.000026
S357R357GAgAGgG13B.1.1770.000013
S357R357KaGAaAG13B.1.1770.000013
S357R357XAgaTga13B.1.2210.000071
S357R357XAGaTAa13B.1.2210.000071
S357R357XAGATAG13B.1.2210.000071
S357R357IaGaaTa33B.1.2580.0002
S357R357GAgaGga23B.1.258.110.000793
S357R357GAgAGgT13B.1.258.110.000396
S357R357GAgaGga33B.1.258.170.000312
S357R357VAGAGTT13B.1.4170.028571
S357R357GAgAGgT13B.1.4170.028571
S357R357VAGaGTa13B.1.4170.028571
S357R357XAGATAG13B.1.4170.028571
S357R357GAgAGgG13B.1.4170.028571
S357R357XAgaTga13B.1.4170.028571
S357R357XAGaTAa13B.1.4170.028571
S357R357GAgaGga13B.1.4170.028571
S357R357VAGAGTG13B.1.4170.028571
S357R357delAGA---33B.1.617.20.000011
S357R357XAgaTga220.111111
S357R357VAGAGTT120.055556
S357R357IaGaaTa120.055556
S357R357VAGaGTa120.055556
S357R357IaGAaTT120.055556
S357R357HAGACAT12All0
S357R357HAGACAC12All0
S357R357KaGaaAa22AP.10.003003
S357R357IaGaaTa22AY.1000.000092
S357R357IaGaaTa22AY.1030.000012
S357R357KaGaaAa22AY.290.000032
S357R357KaGaaAa22AY.30.00002
S357R357delAGA---22AY.350.000466
S357R357KaGaaAa22AY.390.000049
S357R357KaGaaAa22AY.40.000003
S357R357IaGaaTa22AY.430.000009
S357R357IaGaaTa22AY.46.60.000144
S357R357RAgaCga12AY.50.000021
S357R357RagAagG12AY.50.000021
S357R357IaGaaTa22AY.520.001629
S357R357RagAagG22AY.70.000392
S357R357KaGaaAa22AY.770.002255
S357R357KaGaaAa22AY.90.000135
S357R357KaGaaAa22B0.000256
S357R357VAGaGTa12B.10.000009
S357R357HAGACAT12B.10.000009
S357R357FAGATTT12B.10.000009
S357R357HAGACAC12B.10.000009
S357R357FAGATTC12B.10.000009
S357R357VAGAGTG12B.10.000009
S357R357delAGA---22B.1.10.000036
S357R357KaGaaAa22B.1.10.000036
S357R357RagAagG22B.1.1.2140.000111
S357R357RagAagG22B.1.1770.000026
S357R357EAGAGAG12B.1.1770.000013
S357R357EAGaGAa12B.1.1770.000013
S357R357delAGA---22B.1.20.000018
S357R357GAgAGgG12B.1.20.000009
S357R357GAgaGga12B.1.20.000009
S357R357EAGaGAa12B.1.20.000009
S357R357EAGAGAG12B.1.20.000009
S357R357KaGAaAG12B.1.2210.000071
S357R357KaGaaAa12B.1.2210.000071
S357R357LAGATTG12B.1.2580.000067
S357R357EAGAGAG12B.1.2580.000067
S357R357EAGaGAa12B.1.2580.000067
S357R357LAGaTTa12B.1.2580.000067
S357R357XAgaTga12B.1.258.110.000396
S357R357XAGaTAa12B.1.258.110.000396
S357R357KaGaaAa22B.1.3110.000549
S357R357KaGAaAG12B.1.4170.028571
S357R357IaGaaTa12B.1.4170.028571
S357R357LAGATTG12B.1.4170.028571
S357R357KaGaaAa12B.1.4170.028571
S357R357IaGAaTT12B.1.4170.028571
S357R357LAGaTTa12B.1.4170.028571
S357R357EAGAGAG12B.1.4170.028571
S357R357EAGaGAa12B.1.4170.028571
S357R357RagAagG22B.1.4270.000101
S357R357RagAagG22B.1.5260.000047
S357R357IaGaaTa12B.1.780.008547
S357R357IaGAaTT12B.1.780.008547
S357R357KaGaaAa22P.1.10.000635
S357R357KaGaaAa22Q.80.00033
S357R357RagAagG22R.10.00018
S357R357WAgATgG110.055556
S357R357RagAagG110.055556
S357R357SagAagT110.055556
S357R357IaGaaTa11A0.000387
S357R357IaGAaTC11AE.30.032258
S357R357RAgaCga11AY.1000.000046
S357R357IaGaaTa11AY.1010.00049
S357R357RAgaCga11AY.1020.000027
S357R357KaGaaAa11AY.1020.000027
S357R357RAgaCga11AY.1030.000006
S357R357TaGaaCa11AY.1030.000006
S357R357RagAagG11AY.1060.000335
S357R357delAGA---11AY.1070.000466
S357R357RagAagG11AY.1080.001103
S357R357RagAagG11AY.1130.000142
S357R357KaGaaAa11AY.116.10.000311
S357R357KaGaaAa11AY.1180.000063
S357R357delAGA---11AY.1200.000037
S357R357RagAagG11AY.1200.000037
S357R357RagAagG11AY.160.00038
S357R357RAgaCga11AY.230.00007
S357R357delAGA---11AY.230.00007
S357R357KaGaaAa11AY.250.000006
S357R357RagAagG11AY.250.000006
S357R357IaGaaTa11AY.250.000006
S357R357IaGaaTa11AY.260.000028
S357R357RagAagG11AY.260.000028
S357R357RagAagG11AY.270.000065
S357R357RagAagG11AY.29.10.000221
S357R357RagAagG11AY.30.00001
S357R357IaGaaTa11AY.30.00001
S357R357IaGaaTa11AY.320.000532
S357R357delAGA---11AY.330.000067
S357R357KaGaaAa11AY.34.10.00051
S357R357delAGA---11AY.40.000002
S357R357KaGaaAa11AY.4.20.000022
S357R357RagAagG11AY.4.20.000022
S357R357delAGA---11AY.430.000004
S357R357SagAagC11AY.430.000004
S357R357delAGA---11AY.460.000104
S357R357RagAagG11AY.460.000104
S357R357RAgaCga11AY.46.40.000165
S357R357KaGaaAa11AY.46.60.000072
S357R357RagAagG11AY.490.003195
S357R357RagAagG11AY.540.000095
S357R357KaGaaAa11AY.550.000917
S357R357KaGaaAa11AY.570.000656
S357R357RAgaCga11AY.620.000436
S357R357delAGA---11AY.720.001361
S357R357SagAagT11AY.750.000056
S357R357delAGA---11AY.75.10.00018
S357R357TaGaaCa11AY.75.10.00018
S357R357delAGA---11AY.90.000068
S357R357RagAagG11AY.9.20.000037
S357R357IaGaaTa11AY.98.10.000048
S357R357RagAagG11AY.99.20.000092
S357R357IaGaaTa11B0.000128
S357R357RagAagG11B0.000128
S357R357DAGAGAT11B.10.000009
S357R357del1agAag-11B.10.000009
S357R357IaGaaTa11B.1.10.000018
S357R357KaGaaAa11B.1.1.100.001115
S357R357IaGaaTa11B.1.1.100.001115
S357R357KaGaaAa11B.1.1.1740.003378
S357R357KaGaaAa11B.1.1.2140.000055
S357R357RagAagG11B.1.1.250.000569
S357R357KaGaaAa11B.1.1.30.008696
S357R357RagAagG11B.1.1.3060.000438
S357R357KaGaaAa11B.1.1.3170.000412
S357R357IaGaaTa11B.1.1.3480.000796
S357R357RagAagG11B.1.1.4340.000349
S357R357RagAagG11B.1.1.450.014085
S357R357IaGaaTa11B.1.1.5190.00004
S357R357IaGaaTa11B.1.1.630.000386
S357R357del1AGA-NN11B.1.1.70.000001
S357R357GAgaGga11B.1.1.70.000001
S357R357RagAagG11B.1.130.002375
S357R357GAgaGga11B.1.1600.000031
S357R357KaGaaAa11B.1.1600.000031
S357R357XAgaTga11B.1.1600.000031
S357R357XAgaTga11B.1.1770.000013
S357R357SagAagC11B.1.1770.000013
S357R357delAGA---11B.1.1770.000013
S357R357delAGA---11B.1.177.180.00116
S357R357KaGaaAa11B.1.177.330.001645
S357R357del1aGAa-C11B.1.177.350.000691
S357R357delAGA---11B.1.177.500.004695
S357R357RagAagG11B.1.177.70.000165
S357R357del1agAag-11B.1.177.730.000566
S357R357KaGaaAa11B.1.177.750.001041
S357R357RagAagG11B.1.20.000009
S357R357YAGATAT11B.1.2210.000071
S357R357CAgATgT11B.1.2210.000071
S357R357RagAagG11B.1.2210.000071
S357R357WAgATgG11B.1.2210.000071
S357R357SagAagT11B.1.2210.000071
S357R357NaGAaAT11B.1.2210.000071
S357R357RagAagG11B.1.2320.000537
S357R357RAgaCga11B.1.2340.000132
S357R357KaGaaAa11B.1.2360.002053
S357R357KaGaaAa11B.1.2400.000216
S357R357delAGA---11B.1.2420.018868
S357R357MaGAaTG11B.1.2580.000067
S357R357RagAagG11B.1.2580.000067
S357R357SagAagT11B.1.2580.000067
S357R357DAGAGAT11B.1.2580.000067
S357R357XAgaTga11B.1.2580.000067
S357R357NaGAaAT11B.1.2580.000067
S357R357EAGaGAa11B.1.258.110.000396
S357R357NaGAaAT11B.1.258.110.000396
S357R357CAgATgT11B.1.258.110.000396
S357R357YAGATAT11B.1.258.110.000396
S357R357KaGaaAa11B.1.258.110.000396
S357R357DAGAGAT11B.1.258.110.000396
S357R357IaGaaTa11B.1.258.110.000396
S357R357VAGaGTa11B.1.258.110.000396
S357R357SagAagT11B.1.258.110.000396
S357R357CAgATgC11B.1.258.170.000104
S357R357RagAagG11B.1.2910.019231
S357R357IaGaaTa11B.1.3010.005917
S357R357KaGaaAa11B.1.3510.00003
S357R357delAGA---11B.1.3690.000285
S357R357IaGaaTa11B.1.3910.001127
S357R357delAGA---11B.1.4090.000781
S357R357MaGAaTG11B.1.4170.028571
S357R357FAGATTT11B.1.4170.028571
S357R357WAgATgG11B.1.4170.028571
S357R357CAgATgT11B.1.4170.028571
S357R357YAGATAT11B.1.4170.028571
S357R357SagAagT11B.1.4170.028571
S357R357NaGAaAT11B.1.4170.028571
S357R357RagAagG11B.1.4170.028571
S357R357DAGAGAT11B.1.4170.028571
S357R357RagAagG11B.1.5250.000113
S357R357KaGaaAa11B.1.5250.000113
S357R357KaGaaAa11B.1.5800.004065
S357R357del1aGaa-a11B.1.5960.000087
S357R357RAgaCga11B.1.617.10.000129
S357R357delAGA---11B.1.6200.000946
S357R357KaGaaAa11B.1.6210.000089
S357R357RAgaCga11B.1.6230.000536
S357R357IaGaaTa11B.1.6230.000536
S357R357CAgATgT11B.1.780.008547
S357R357SagAagT11B.1.780.008547
S357R357XAgaTga11B.1.780.008547
S357R357FAGATTT11B.1.780.008547
S357R357LAGaTTa11B.1.780.008547
S357R357KaGaaAa11B.4.80.071429
S357R357KaGaaAa11B.550.00295
S357R357KaGaaAa11B.600.015873
S357R357KaGaaAa11C.370.000116
S357R357IaGaaTa11D.20.000075
S357R357KaGaaAa11D.20.000075
S357R357RagAagG11N.90.005952
S357R357KaGaaAa11P.10.000016
S357R357IaGaaTa11P.10.000016
S357R357KaGaaAa11P.1.140.000048
S357R357IaGaaTa11R.10.00009