CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 357 | R357K | nonsyn | aGa | aAa | 2221 | 2204 | 0.992346 | 22631-22633 | |
S | 357 | R357K | nonsyn | aGA | aAG | 2221 | 17 | 0.00765421 | 22631-22633 | |
S | 357 | R357R | syn | agA | agG | 222 | 155 | 0.698198 | 22631-22633 | |
S | 357 | R357R | syn | Aga | Cga | 222 | 63 | 0.283784 | 22631-22633 | |
S | 357 | R357R | syn | AgA | CgG | 222 | 2 | 0.00900901 | 22631-22633 | |
S | 357 | R357R | syn | AgA | CgT | 222 | 1 | 0.0045045 | 22631-22633 | |
S | 357 | R357R | syn | AgA | CgC | 222 | 1 | 0.0045045 | 22631-22633 | |
S | 357 | R357I | nonsyn | aGa | aTa | 65 | 59 | 0.907692 | 22631-22633 | |
S | 357 | R357I | nonsyn | aGA | aTT | 65 | 4 | 0.0615385 | 22631-22633 | |
S | 357 | R357I | nonsyn | aGA | aTC | 65 | 2 | 0.0307692 | 22631-22633 | |
S | 357 | R357del | del | AGA | --- | 48 | 48 | 1 | 22631-22633 | |
S | 357 | R357G | nonsyn | Aga | Gga | 48 | 30 | 0.625 | 22631-22633 | |
S | 357 | R357G | nonsyn | AgA | GgG | 48 | 12 | 0.25 | 22631-22633 | |
S | 357 | R357G | nonsyn | AgA | GgT | 48 | 6 | 0.125 | 22631-22633 | |
S | 357 | R357X | nonsyn | Aga | Tga | 33 | 17 | 0.515152 | 22631-22633 | |
S | 357 | R357X | nonsyn | AGa | TAa | 33 | 9 | 0.272727 | 22631-22633 | |
S | 357 | R357X | nonsyn | AGA | TAG | 33 | 7 | 0.212121 | 22631-22633 | |
S | 357 | R357E | nonsyn | AGa | GAa | 28 | 16 | 0.571429 | 22631-22633 | |
S | 357 | R357E | nonsyn | AGA | GAG | 28 | 12 | 0.428571 | 22631-22633 | |
S | 357 | R357S | nonsyn | agA | agT | 19 | 13 | 0.684211 | 22631-22633 | |
S | 357 | R357S | nonsyn | agA | agC | 19 | 4 | 0.210526 | 22631-22633 | |
S | 357 | R357S | nonsyn | AGa | TCa | 19 | 1 | 0.0526316 | 22631-22633 | |
S | 357 | R357S | nonsyn | AGA | TCG | 19 | 1 | 0.0526316 | 22631-22633 | |
S | 357 | R357L | nonsyn | AGa | TTa | 17 | 6 | 0.352941 | 22631-22633 | |
S | 357 | R357L | nonsyn | AGA | TTG | 17 | 5 | 0.294118 | 22631-22633 | |
S | 357 | R357L | nonsyn | AGa | CTa | 17 | 2 | 0.117647 | 22631-22633 | |
S | 357 | R357L | nonsyn | AGA | CTG | 17 | 2 | 0.117647 | 22631-22633 | |
S | 357 | R357L | nonsyn | AGA | CTT | 17 | 1 | 0.0588235 | 22631-22633 | |
S | 357 | R357L | nonsyn | AGA | CTC | 17 | 1 | 0.0588235 | 22631-22633 | |
S | 357 | R357T | nonsyn | aGa | aCa | 16 | 13 | 0.8125 | 22631-22633 | |
S | 357 | R357T | nonsyn | aGA | aCG | 16 | 3 | 0.1875 | 22631-22633 | |
S | 357 | R357W | nonsyn | AgA | TgG | 10 | 10 | 1 | 22631-22633 | |
S | 357 | R357C | nonsyn | AgA | TgT | 9 | 6 | 0.666667 | 22631-22633 | |
S | 357 | R357C | nonsyn | AgA | TgC | 9 | 3 | 0.333333 | 22631-22633 | |
S | 357 | R357V | nonsyn | AGa | GTa | 8 | 4 | 0.5 | 22631-22633 | |
S | 357 | R357V | nonsyn | AGA | GTT | 8 | 2 | 0.25 | 22631-22633 | |
S | 357 | R357V | nonsyn | AGA | GTG | 8 | 2 | 0.25 | 22631-22633 | |
S | 357 | R357N | nonsyn | aGA | aAT | 7 | 6 | 0.857143 | 22631-22633 | |
S | 357 | R357N | nonsyn | aGA | aAC | 7 | 1 | 0.142857 | 22631-22633 | |
S | 357 | R357M | nonsyn | aGA | aTG | 6 | 6 | 1 | 22631-22633 | |
S | 357 | R357Y | nonsyn | AGA | TAT | 6 | 5 | 0.833333 | 22631-22633 | |
S | 357 | R357A | nonsyn | AGa | GCa | 6 | 3 | 0.5 | 22631-22633 | |
S | 357 | R357A | nonsyn | AGA | GCG | 6 | 3 | 0.5 | 22631-22633 | |
S | 357 | R357Y | nonsyn | AGA | TAC | 6 | 1 | 0.166667 | 22631-22633 | |
S | 357 | R357del1 | del | agA | ag- | 5 | 2 | 0.4 | 22631-22633 | |
S | 357 | R357del1 | del | aGa | a-a | 5 | 1 | 0.2 | 22631-22633 | |
S | 357 | R357del1 | del | aGA | a-C | 5 | 1 | 0.2 | 22631-22633 | |
S | 357 | R357del1 | del | AGA | -NN | 5 | 1 | 0.2 | 22631-22633 | |
S | 357 | R357D | nonsyn | AGA | GAT | 4 | 4 | 1 | 22631-22633 | |
S | 357 | R357F | nonsyn | AGA | TTT | 4 | 3 | 0.75 | 22631-22633 | |
S | 357 | R357Q | nonsyn | AGa | CAa | 4 | 2 | 0.5 | 22631-22633 | |
S | 357 | R357Q | nonsyn | AGA | CAG | 4 | 2 | 0.5 | 22631-22633 | |
S | 357 | R357F | nonsyn | AGA | TTC | 4 | 1 | 0.25 | 22631-22633 | |
S | 357 | R357H | nonsyn | AGA | CAT | 2 | 1 | 0.5 | 22631-22633 | |
S | 357 | R357H | nonsyn | AGA | CAC | 2 | 1 | 0.5 | 22631-22633 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 357 | R357K | aGa | aAa | 2204 | 2221 | All | 0.000422 |
S | 357 | R357K | aGA | aAG | 17 | 2221 | All | 0.000003 |
S | 357 | R357K | aGa | aAa | 1925 | 1925 | B.1.1.176 | 0.845782 |
S | 357 | R357R | agA | agG | 155 | 222 | All | 0.00003 |
S | 357 | R357R | Aga | Cga | 63 | 222 | All | 0.000012 |
S | 357 | R357R | AgA | CgG | 2 | 222 | All | 0 |
S | 357 | R357R | AgA | CgC | 1 | 222 | All | 0 |
S | 357 | R357R | AgA | CgT | 1 | 222 | All | 0 |
S | 357 | R357K | aGa | aAa | 80 | 80 | AY.103 | 0.000497 |
S | 357 | R357I | aGa | aTa | 59 | 65 | All | 0.000011 |
S | 357 | R357I | aGA | aTT | 4 | 65 | All | 0.000001 |
S | 357 | R357I | aGA | aTC | 2 | 65 | All | 0 |
S | 357 | R357R | agA | agG | 44 | 49 | B.1.1.7 | 0.000039 |
S | 357 | R357R | Aga | Cga | 5 | 49 | B.1.1.7 | 0.000004 |
S | 357 | R357del | AGA | --- | 48 | 48 | All | 0.000009 |
S | 357 | R357G | Aga | Gga | 30 | 48 | All | 0.000006 |
S | 357 | R357G | AgA | GgG | 12 | 48 | All | 0.000002 |
S | 357 | R357G | AgA | GgT | 6 | 48 | All | 0.000001 |
S | 357 | R357K | aGa | aAa | 36 | 36 | B.1.1.7 | 0.000032 |
S | 357 | R357K | aGa | aAa | 23 | 34 | B.1 | 0.000211 |
S | 357 | R357K | aGA | aAG | 11 | 34 | B.1 | 0.000101 |
S | 357 | R357X | Aga | Tga | 17 | 33 | All | 0.000003 |
S | 357 | R357X | AGa | TAa | 9 | 33 | All | 0.000002 |
S | 357 | R357X | AGA | TAG | 7 | 33 | All | 0.000001 |
S | 357 | R357E | AGa | GAa | 16 | 28 | All | 0.000003 |
S | 357 | R357E | AGA | GAG | 12 | 28 | All | 0.000002 |
S | 357 | R357R | Aga | Cga | 14 | 27 | AY.44 | 0.000085 |
S | 357 | R357R | agA | agG | 13 | 27 | AY.44 | 0.000079 |
S | 357 | R357G | Aga | Gga | 15 | 25 | B.1 | 0.000137 |
S | 357 | R357G | AgA | GgG | 8 | 25 | B.1 | 0.000073 |
S | 357 | R357G | AgA | GgT | 2 | 25 | B.1 | 0.000018 |
S | 357 | R357R | agA | agG | 14 | 20 | B.1 | 0.000128 |
S | 357 | R357R | Aga | Cga | 2 | 20 | B.1 | 0.000018 |
S | 357 | R357R | AgA | CgG | 2 | 20 | B.1 | 0.000018 |
S | 357 | R357R | AgA | CgT | 1 | 20 | B.1 | 0.000009 |
S | 357 | R357R | AgA | CgC | 1 | 20 | B.1 | 0.000009 |
S | 357 | R357S | agA | agT | 13 | 19 | All | 0.000002 |
S | 357 | R357S | agA | agC | 4 | 19 | All | 0.000001 |
S | 357 | R357S | AGA | TCG | 1 | 19 | All | 0 |
S | 357 | R357S | AGa | TCa | 1 | 19 | All | 0 |
S | 357 | R357E | AGa | GAa | 11 | 19 | B.1 | 0.000101 |
S | 357 | R357X | Aga | Tga | 8 | 19 | B.1 | 0.000073 |
S | 357 | R357E | AGA | GAG | 8 | 19 | B.1 | 0.000073 |
S | 357 | R357X | AGa | TAa | 6 | 19 | B.1 | 0.000055 |
S | 357 | R357X | AGA | TAG | 5 | 19 | B.1 | 0.000046 |
S | 357 | R357R | agA | agG | 11 | 19 | B.1.617.2 | 0.000041 |
S | 357 | R357R | Aga | Cga | 8 | 19 | B.1.617.2 | 0.00003 |
S | 357 | R357R | Aga | Cga | 18 | 18 | AY.43 | 0.00008 |
S | 357 | R357L | AGa | TTa | 6 | 17 | All | 0.000001 |
S | 357 | R357L | AGA | TTG | 5 | 17 | All | 0.000001 |
S | 357 | R357L | AGA | CTG | 2 | 17 | All | 0 |
S | 357 | R357L | AGa | CTa | 2 | 17 | All | 0 |
S | 357 | R357L | AGA | CTT | 1 | 17 | All | 0 |
S | 357 | R357L | AGA | CTC | 1 | 17 | All | 0 |
S | 357 | R357T | aGa | aCa | 13 | 16 | All | 0.000002 |
S | 357 | R357T | aGA | aCG | 3 | 16 | All | 0.000001 |
S | 357 | R357K | aGa | aAa | 16 | 16 | B.1.427 | 0.000808 |
S | 357 | R357del | AGA | --- | 15 | 15 | B.1.1.7 | 0.000013 |
S | 357 | R357R | agA | agG | 8 | 14 | AY.4 | 0.000012 |
S | 357 | R357R | Aga | Cga | 6 | 14 | AY.4 | 0.000009 |
S | 357 | R357I | aGa | aTa | 12 | 14 | B.1 | 0.00011 |
S | 357 | R357I | aGA | aTT | 1 | 14 | B.1 | 0.000009 |
S | 357 | R357I | aGA | aTC | 1 | 14 | B.1 | 0.000009 |
S | 357 | R357L | AGA | TTG | 3 | 12 | B.1 | 0.000027 |
S | 357 | R357L | AGa | TTa | 3 | 12 | B.1 | 0.000027 |
S | 357 | R357L | AGa | CTa | 2 | 12 | B.1 | 0.000018 |
S | 357 | R357L | AGA | CTG | 2 | 12 | B.1 | 0.000018 |
S | 357 | R357L | AGA | CTT | 1 | 12 | B.1 | 0.000009 |
S | 357 | R357L | AGA | CTC | 1 | 12 | B.1 | 0.000009 |
S | 357 | R357K | aGa | aAa | 12 | 12 | B.1.429 | 0.000282 |
S | 357 | R357K | aGa | aAa | 10 | 11 | B.1.2 | 0.000088 |
S | 357 | R357K | aGA | aAG | 1 | 11 | B.1.2 | 0.000009 |
S | 357 | R357R | agA | agG | 11 | 11 | B.1.478 | 0.129412 |
S | 357 | R357W | AgA | TgG | 10 | 10 | All | 0.000002 |
S | 357 | R357C | AgA | TgT | 6 | 9 | All | 0.000001 |
S | 357 | R357C | AgA | TgC | 3 | 9 | All | 0.000001 |
S | 357 | R357K | aGa | aAa | 9 | 9 | B.1.617.2 | 0.000034 |
S | 357 | R357V | AGa | GTa | 4 | 8 | All | 0.000001 |
S | 357 | R357V | AGA | GTG | 2 | 8 | All | 0 |
S | 357 | R357V | AGA | GTT | 2 | 8 | All | 0 |
S | 357 | R357K | aGa | aAa | 8 | 8 | B.1.621.1 | 0.004047 |
S | 357 | R357N | aGA | aAT | 6 | 7 | All | 0.000001 |
S | 357 | R357N | aGA | aAC | 1 | 7 | All | 0 |
S | 357 | R357K | aGa | aAa | 7 | 7 | AS.1 | 0.066667 |
S | 357 | R357W | AgA | TgG | 7 | 7 | B.1 | 0.000064 |
S | 357 | R357T | aGa | aCa | 4 | 7 | B.1 | 0.000037 |
S | 357 | R357T | aGA | aCG | 3 | 7 | B.1 | 0.000027 |
S | 357 | R357S | agA | agT | 3 | 7 | B.1 | 0.000027 |
S | 357 | R357S | agA | agC | 2 | 7 | B.1 | 0.000018 |
S | 357 | R357S | AGa | TCa | 1 | 7 | B.1 | 0.000009 |
S | 357 | R357S | AGA | TCG | 1 | 7 | B.1 | 0.000009 |
S | 357 | R357M | aGA | aTG | 6 | 6 | All | 0.000001 |
S | 357 | R357Y | AGA | TAT | 5 | 6 | All | 0.000001 |
S | 357 | R357A | AGA | GCG | 3 | 6 | All | 0.000001 |
S | 357 | R357A | AGa | GCa | 3 | 6 | All | 0.000001 |
S | 357 | R357Y | AGA | TAC | 1 | 6 | All | 0 |
S | 357 | R357R | agA | agG | 6 | 6 | AY.39 | 0.000148 |
S | 357 | R357A | AGA | GCG | 3 | 6 | B.1 | 0.000027 |
S | 357 | R357A | AGa | GCa | 3 | 6 | B.1 | 0.000027 |
S | 357 | R357del1 | agA | ag- | 2 | 5 | All | 0 |
S | 357 | R357del1 | AGA | -NN | 1 | 5 | All | 0 |
S | 357 | R357del1 | aGa | a-a | 1 | 5 | All | 0 |
S | 357 | R357del1 | aGA | a-C | 1 | 5 | All | 0 |
S | 357 | R357K | aGa | aAa | 5 | 5 | AY.43 | 0.000022 |
S | 357 | R357K | aGa | aAa | 5 | 5 | AY.46.2 | 0.003177 |
S | 357 | R357D | AGA | GAT | 4 | 4 | All | 0.000001 |
S | 357 | R357F | AGA | TTT | 3 | 4 | All | 0.000001 |
S | 357 | R357Q | AGa | CAa | 2 | 4 | All | 0 |
S | 357 | R357Q | AGA | CAG | 2 | 4 | All | 0 |
S | 357 | R357F | AGA | TTC | 1 | 4 | All | 0 |
S | 357 | R357T | aGa | aCa | 4 | 4 | AY.111 | 0.000733 |
S | 357 | R357I | aGa | aTa | 4 | 4 | AY.4 | 0.000006 |
S | 357 | R357K | aGa | aAa | 4 | 4 | AY.46.1 | 0.004107 |
S | 357 | R357M | aGA | aTG | 4 | 4 | B.1 | 0.000037 |
S | 357 | R357C | AgA | TgT | 2 | 4 | B.1 | 0.000018 |
S | 357 | R357C | AgA | TgC | 2 | 4 | B.1 | 0.000018 |
S | 357 | R357Q | AGA | CAG | 2 | 4 | B.1 | 0.000018 |
S | 357 | R357Q | AGa | CAa | 2 | 4 | B.1 | 0.000018 |
S | 357 | R357del | AGA | --- | 4 | 4 | B.1.258 | 0.000266 |
S | 357 | R357K | aGA | aAG | 2 | 4 | B.1.258 | 0.000133 |
S | 357 | R357G | Aga | Gga | 2 | 4 | B.1.258 | 0.000133 |
S | 357 | R357K | aGa | aAa | 2 | 4 | B.1.258 | 0.000133 |
S | 357 | R357G | AgA | GgT | 1 | 4 | B.1.258 | 0.000067 |
S | 357 | R357G | AgA | GgG | 1 | 4 | B.1.258 | 0.000067 |
S | 357 | R357I | aGa | aTa | 4 | 4 | B.1.617.2 | 0.000015 |
S | 357 | R357G | Aga | Gga | 2 | 3 | 0.111111 | |
S | 357 | R357G | AgA | GgT | 1 | 3 | 0.055556 | |
S | 357 | R357R | agA | agG | 3 | 3 | AY.101 | 0.001471 |
S | 357 | R357K | aGa | aAa | 3 | 3 | AY.20 | 0.000117 |
S | 357 | R357del | AGA | --- | 3 | 3 | B.1 | 0.000027 |
S | 357 | R357Y | AGA | TAT | 2 | 3 | B.1 | 0.000018 |
S | 357 | R357N | aGA | aAT | 2 | 3 | B.1 | 0.000018 |
S | 357 | R357Y | AGA | TAC | 1 | 3 | B.1 | 0.000009 |
S | 357 | R357N | aGA | aAC | 1 | 3 | B.1 | 0.000009 |
S | 357 | R357S | agA | agT | 3 | 3 | B.1.1.7 | 0.000003 |
S | 357 | R357I | aGa | aTa | 3 | 3 | B.1.1.7 | 0.000003 |
S | 357 | R357T | aGa | aCa | 3 | 3 | B.1.1.7 | 0.000003 |
S | 357 | R357K | aGa | aAa | 2 | 3 | B.1.177 | 0.000026 |
S | 357 | R357G | Aga | Gga | 2 | 3 | B.1.177 | 0.000026 |
S | 357 | R357G | AgA | GgG | 1 | 3 | B.1.177 | 0.000013 |
S | 357 | R357K | aGA | aAG | 1 | 3 | B.1.177 | 0.000013 |
S | 357 | R357X | Aga | Tga | 1 | 3 | B.1.221 | 0.000071 |
S | 357 | R357X | AGa | TAa | 1 | 3 | B.1.221 | 0.000071 |
S | 357 | R357X | AGA | TAG | 1 | 3 | B.1.221 | 0.000071 |
S | 357 | R357I | aGa | aTa | 3 | 3 | B.1.258 | 0.0002 |
S | 357 | R357G | Aga | Gga | 2 | 3 | B.1.258.11 | 0.000793 |
S | 357 | R357G | AgA | GgT | 1 | 3 | B.1.258.11 | 0.000396 |
S | 357 | R357G | Aga | Gga | 3 | 3 | B.1.258.17 | 0.000312 |
S | 357 | R357V | AGA | GTT | 1 | 3 | B.1.417 | 0.028571 |
S | 357 | R357G | AgA | GgT | 1 | 3 | B.1.417 | 0.028571 |
S | 357 | R357V | AGa | GTa | 1 | 3 | B.1.417 | 0.028571 |
S | 357 | R357X | AGA | TAG | 1 | 3 | B.1.417 | 0.028571 |
S | 357 | R357G | AgA | GgG | 1 | 3 | B.1.417 | 0.028571 |
S | 357 | R357X | Aga | Tga | 1 | 3 | B.1.417 | 0.028571 |
S | 357 | R357X | AGa | TAa | 1 | 3 | B.1.417 | 0.028571 |
S | 357 | R357G | Aga | Gga | 1 | 3 | B.1.417 | 0.028571 |
S | 357 | R357V | AGA | GTG | 1 | 3 | B.1.417 | 0.028571 |
S | 357 | R357del | AGA | --- | 3 | 3 | B.1.617.2 | 0.000011 |
S | 357 | R357X | Aga | Tga | 2 | 2 | 0.111111 | |
S | 357 | R357V | AGA | GTT | 1 | 2 | 0.055556 | |
S | 357 | R357I | aGa | aTa | 1 | 2 | 0.055556 | |
S | 357 | R357V | AGa | GTa | 1 | 2 | 0.055556 | |
S | 357 | R357I | aGA | aTT | 1 | 2 | 0.055556 | |
S | 357 | R357H | AGA | CAT | 1 | 2 | All | 0 |
S | 357 | R357H | AGA | CAC | 1 | 2 | All | 0 |
S | 357 | R357K | aGa | aAa | 2 | 2 | AP.1 | 0.003003 |
S | 357 | R357I | aGa | aTa | 2 | 2 | AY.100 | 0.000092 |
S | 357 | R357I | aGa | aTa | 2 | 2 | AY.103 | 0.000012 |
S | 357 | R357K | aGa | aAa | 2 | 2 | AY.29 | 0.000032 |
S | 357 | R357K | aGa | aAa | 2 | 2 | AY.3 | 0.00002 |
S | 357 | R357del | AGA | --- | 2 | 2 | AY.35 | 0.000466 |
S | 357 | R357K | aGa | aAa | 2 | 2 | AY.39 | 0.000049 |
S | 357 | R357K | aGa | aAa | 2 | 2 | AY.4 | 0.000003 |
S | 357 | R357I | aGa | aTa | 2 | 2 | AY.43 | 0.000009 |
S | 357 | R357I | aGa | aTa | 2 | 2 | AY.46.6 | 0.000144 |
S | 357 | R357R | Aga | Cga | 1 | 2 | AY.5 | 0.000021 |
S | 357 | R357R | agA | agG | 1 | 2 | AY.5 | 0.000021 |
S | 357 | R357I | aGa | aTa | 2 | 2 | AY.52 | 0.001629 |
S | 357 | R357R | agA | agG | 2 | 2 | AY.7 | 0.000392 |
S | 357 | R357K | aGa | aAa | 2 | 2 | AY.77 | 0.002255 |
S | 357 | R357K | aGa | aAa | 2 | 2 | AY.9 | 0.000135 |
S | 357 | R357K | aGa | aAa | 2 | 2 | B | 0.000256 |
S | 357 | R357V | AGa | GTa | 1 | 2 | B.1 | 0.000009 |
S | 357 | R357H | AGA | CAT | 1 | 2 | B.1 | 0.000009 |
S | 357 | R357F | AGA | TTT | 1 | 2 | B.1 | 0.000009 |
S | 357 | R357H | AGA | CAC | 1 | 2 | B.1 | 0.000009 |
S | 357 | R357F | AGA | TTC | 1 | 2 | B.1 | 0.000009 |
S | 357 | R357V | AGA | GTG | 1 | 2 | B.1 | 0.000009 |
S | 357 | R357del | AGA | --- | 2 | 2 | B.1.1 | 0.000036 |
S | 357 | R357K | aGa | aAa | 2 | 2 | B.1.1 | 0.000036 |
S | 357 | R357R | agA | agG | 2 | 2 | B.1.1.214 | 0.000111 |
S | 357 | R357R | agA | agG | 2 | 2 | B.1.177 | 0.000026 |
S | 357 | R357E | AGA | GAG | 1 | 2 | B.1.177 | 0.000013 |
S | 357 | R357E | AGa | GAa | 1 | 2 | B.1.177 | 0.000013 |
S | 357 | R357del | AGA | --- | 2 | 2 | B.1.2 | 0.000018 |
S | 357 | R357G | AgA | GgG | 1 | 2 | B.1.2 | 0.000009 |
S | 357 | R357G | Aga | Gga | 1 | 2 | B.1.2 | 0.000009 |
S | 357 | R357E | AGa | GAa | 1 | 2 | B.1.2 | 0.000009 |
S | 357 | R357E | AGA | GAG | 1 | 2 | B.1.2 | 0.000009 |
S | 357 | R357K | aGA | aAG | 1 | 2 | B.1.221 | 0.000071 |
S | 357 | R357K | aGa | aAa | 1 | 2 | B.1.221 | 0.000071 |
S | 357 | R357L | AGA | TTG | 1 | 2 | B.1.258 | 0.000067 |
S | 357 | R357E | AGA | GAG | 1 | 2 | B.1.258 | 0.000067 |
S | 357 | R357E | AGa | GAa | 1 | 2 | B.1.258 | 0.000067 |
S | 357 | R357L | AGa | TTa | 1 | 2 | B.1.258 | 0.000067 |
S | 357 | R357X | Aga | Tga | 1 | 2 | B.1.258.11 | 0.000396 |
S | 357 | R357X | AGa | TAa | 1 | 2 | B.1.258.11 | 0.000396 |
S | 357 | R357K | aGa | aAa | 2 | 2 | B.1.311 | 0.000549 |
S | 357 | R357K | aGA | aAG | 1 | 2 | B.1.417 | 0.028571 |
S | 357 | R357I | aGa | aTa | 1 | 2 | B.1.417 | 0.028571 |
S | 357 | R357L | AGA | TTG | 1 | 2 | B.1.417 | 0.028571 |
S | 357 | R357K | aGa | aAa | 1 | 2 | B.1.417 | 0.028571 |
S | 357 | R357I | aGA | aTT | 1 | 2 | B.1.417 | 0.028571 |
S | 357 | R357L | AGa | TTa | 1 | 2 | B.1.417 | 0.028571 |
S | 357 | R357E | AGA | GAG | 1 | 2 | B.1.417 | 0.028571 |
S | 357 | R357E | AGa | GAa | 1 | 2 | B.1.417 | 0.028571 |
S | 357 | R357R | agA | agG | 2 | 2 | B.1.427 | 0.000101 |
S | 357 | R357R | agA | agG | 2 | 2 | B.1.526 | 0.000047 |
S | 357 | R357I | aGa | aTa | 1 | 2 | B.1.78 | 0.008547 |
S | 357 | R357I | aGA | aTT | 1 | 2 | B.1.78 | 0.008547 |
S | 357 | R357K | aGa | aAa | 2 | 2 | P.1.1 | 0.000635 |
S | 357 | R357K | aGa | aAa | 2 | 2 | Q.8 | 0.00033 |
S | 357 | R357R | agA | agG | 2 | 2 | R.1 | 0.00018 |
S | 357 | R357W | AgA | TgG | 1 | 1 | 0.055556 | |
S | 357 | R357R | agA | agG | 1 | 1 | 0.055556 | |
S | 357 | R357S | agA | agT | 1 | 1 | 0.055556 | |
S | 357 | R357I | aGa | aTa | 1 | 1 | A | 0.000387 |
S | 357 | R357I | aGA | aTC | 1 | 1 | AE.3 | 0.032258 |
S | 357 | R357R | Aga | Cga | 1 | 1 | AY.100 | 0.000046 |
S | 357 | R357I | aGa | aTa | 1 | 1 | AY.101 | 0.00049 |
S | 357 | R357R | Aga | Cga | 1 | 1 | AY.102 | 0.000027 |
S | 357 | R357K | aGa | aAa | 1 | 1 | AY.102 | 0.000027 |
S | 357 | R357R | Aga | Cga | 1 | 1 | AY.103 | 0.000006 |
S | 357 | R357T | aGa | aCa | 1 | 1 | AY.103 | 0.000006 |
S | 357 | R357R | agA | agG | 1 | 1 | AY.106 | 0.000335 |
S | 357 | R357del | AGA | --- | 1 | 1 | AY.107 | 0.000466 |
S | 357 | R357R | agA | agG | 1 | 1 | AY.108 | 0.001103 |
S | 357 | R357R | agA | agG | 1 | 1 | AY.113 | 0.000142 |
S | 357 | R357K | aGa | aAa | 1 | 1 | AY.116.1 | 0.000311 |
S | 357 | R357K | aGa | aAa | 1 | 1 | AY.118 | 0.000063 |
S | 357 | R357del | AGA | --- | 1 | 1 | AY.120 | 0.000037 |
S | 357 | R357R | agA | agG | 1 | 1 | AY.120 | 0.000037 |
S | 357 | R357R | agA | agG | 1 | 1 | AY.16 | 0.00038 |
S | 357 | R357R | Aga | Cga | 1 | 1 | AY.23 | 0.00007 |
S | 357 | R357del | AGA | --- | 1 | 1 | AY.23 | 0.00007 |
S | 357 | R357K | aGa | aAa | 1 | 1 | AY.25 | 0.000006 |
S | 357 | R357R | agA | agG | 1 | 1 | AY.25 | 0.000006 |
S | 357 | R357I | aGa | aTa | 1 | 1 | AY.25 | 0.000006 |
S | 357 | R357I | aGa | aTa | 1 | 1 | AY.26 | 0.000028 |
S | 357 | R357R | agA | agG | 1 | 1 | AY.26 | 0.000028 |
S | 357 | R357R | agA | agG | 1 | 1 | AY.27 | 0.000065 |
S | 357 | R357R | agA | agG | 1 | 1 | AY.29.1 | 0.000221 |
S | 357 | R357R | agA | agG | 1 | 1 | AY.3 | 0.00001 |
S | 357 | R357I | aGa | aTa | 1 | 1 | AY.3 | 0.00001 |
S | 357 | R357I | aGa | aTa | 1 | 1 | AY.32 | 0.000532 |
S | 357 | R357del | AGA | --- | 1 | 1 | AY.33 | 0.000067 |
S | 357 | R357K | aGa | aAa | 1 | 1 | AY.34.1 | 0.00051 |
S | 357 | R357del | AGA | --- | 1 | 1 | AY.4 | 0.000002 |
S | 357 | R357K | aGa | aAa | 1 | 1 | AY.4.2 | 0.000022 |
S | 357 | R357R | agA | agG | 1 | 1 | AY.4.2 | 0.000022 |
S | 357 | R357del | AGA | --- | 1 | 1 | AY.43 | 0.000004 |
S | 357 | R357S | agA | agC | 1 | 1 | AY.43 | 0.000004 |
S | 357 | R357del | AGA | --- | 1 | 1 | AY.46 | 0.000104 |
S | 357 | R357R | agA | agG | 1 | 1 | AY.46 | 0.000104 |
S | 357 | R357R | Aga | Cga | 1 | 1 | AY.46.4 | 0.000165 |
S | 357 | R357K | aGa | aAa | 1 | 1 | AY.46.6 | 0.000072 |
S | 357 | R357R | agA | agG | 1 | 1 | AY.49 | 0.003195 |
S | 357 | R357R | agA | agG | 1 | 1 | AY.54 | 0.000095 |
S | 357 | R357K | aGa | aAa | 1 | 1 | AY.55 | 0.000917 |
S | 357 | R357K | aGa | aAa | 1 | 1 | AY.57 | 0.000656 |
S | 357 | R357R | Aga | Cga | 1 | 1 | AY.62 | 0.000436 |
S | 357 | R357del | AGA | --- | 1 | 1 | AY.72 | 0.001361 |
S | 357 | R357S | agA | agT | 1 | 1 | AY.75 | 0.000056 |
S | 357 | R357del | AGA | --- | 1 | 1 | AY.75.1 | 0.00018 |
S | 357 | R357T | aGa | aCa | 1 | 1 | AY.75.1 | 0.00018 |
S | 357 | R357del | AGA | --- | 1 | 1 | AY.9 | 0.000068 |
S | 357 | R357R | agA | agG | 1 | 1 | AY.9.2 | 0.000037 |
S | 357 | R357I | aGa | aTa | 1 | 1 | AY.98.1 | 0.000048 |
S | 357 | R357R | agA | agG | 1 | 1 | AY.99.2 | 0.000092 |
S | 357 | R357I | aGa | aTa | 1 | 1 | B | 0.000128 |
S | 357 | R357R | agA | agG | 1 | 1 | B | 0.000128 |
S | 357 | R357D | AGA | GAT | 1 | 1 | B.1 | 0.000009 |
S | 357 | R357del1 | agA | ag- | 1 | 1 | B.1 | 0.000009 |
S | 357 | R357I | aGa | aTa | 1 | 1 | B.1.1 | 0.000018 |
S | 357 | R357K | aGa | aAa | 1 | 1 | B.1.1.10 | 0.001115 |
S | 357 | R357I | aGa | aTa | 1 | 1 | B.1.1.10 | 0.001115 |
S | 357 | R357K | aGa | aAa | 1 | 1 | B.1.1.174 | 0.003378 |
S | 357 | R357K | aGa | aAa | 1 | 1 | B.1.1.214 | 0.000055 |
S | 357 | R357R | agA | agG | 1 | 1 | B.1.1.25 | 0.000569 |
S | 357 | R357K | aGa | aAa | 1 | 1 | B.1.1.3 | 0.008696 |
S | 357 | R357R | agA | agG | 1 | 1 | B.1.1.306 | 0.000438 |
S | 357 | R357K | aGa | aAa | 1 | 1 | B.1.1.317 | 0.000412 |
S | 357 | R357I | aGa | aTa | 1 | 1 | B.1.1.348 | 0.000796 |
S | 357 | R357R | agA | agG | 1 | 1 | B.1.1.434 | 0.000349 |
S | 357 | R357R | agA | agG | 1 | 1 | B.1.1.45 | 0.014085 |
S | 357 | R357I | aGa | aTa | 1 | 1 | B.1.1.519 | 0.00004 |
S | 357 | R357I | aGa | aTa | 1 | 1 | B.1.1.63 | 0.000386 |
S | 357 | R357del1 | AGA | -NN | 1 | 1 | B.1.1.7 | 0.000001 |
S | 357 | R357G | Aga | Gga | 1 | 1 | B.1.1.7 | 0.000001 |
S | 357 | R357R | agA | agG | 1 | 1 | B.1.13 | 0.002375 |
S | 357 | R357G | Aga | Gga | 1 | 1 | B.1.160 | 0.000031 |
S | 357 | R357K | aGa | aAa | 1 | 1 | B.1.160 | 0.000031 |
S | 357 | R357X | Aga | Tga | 1 | 1 | B.1.160 | 0.000031 |
S | 357 | R357X | Aga | Tga | 1 | 1 | B.1.177 | 0.000013 |
S | 357 | R357S | agA | agC | 1 | 1 | B.1.177 | 0.000013 |
S | 357 | R357del | AGA | --- | 1 | 1 | B.1.177 | 0.000013 |
S | 357 | R357del | AGA | --- | 1 | 1 | B.1.177.18 | 0.00116 |
S | 357 | R357K | aGa | aAa | 1 | 1 | B.1.177.33 | 0.001645 |
S | 357 | R357del1 | aGA | a-C | 1 | 1 | B.1.177.35 | 0.000691 |
S | 357 | R357del | AGA | --- | 1 | 1 | B.1.177.50 | 0.004695 |
S | 357 | R357R | agA | agG | 1 | 1 | B.1.177.7 | 0.000165 |
S | 357 | R357del1 | agA | ag- | 1 | 1 | B.1.177.73 | 0.000566 |
S | 357 | R357K | aGa | aAa | 1 | 1 | B.1.177.75 | 0.001041 |
S | 357 | R357R | agA | agG | 1 | 1 | B.1.2 | 0.000009 |
S | 357 | R357Y | AGA | TAT | 1 | 1 | B.1.221 | 0.000071 |
S | 357 | R357C | AgA | TgT | 1 | 1 | B.1.221 | 0.000071 |
S | 357 | R357R | agA | agG | 1 | 1 | B.1.221 | 0.000071 |
S | 357 | R357W | AgA | TgG | 1 | 1 | B.1.221 | 0.000071 |
S | 357 | R357S | agA | agT | 1 | 1 | B.1.221 | 0.000071 |
S | 357 | R357N | aGA | aAT | 1 | 1 | B.1.221 | 0.000071 |
S | 357 | R357R | agA | agG | 1 | 1 | B.1.232 | 0.000537 |
S | 357 | R357R | Aga | Cga | 1 | 1 | B.1.234 | 0.000132 |
S | 357 | R357K | aGa | aAa | 1 | 1 | B.1.236 | 0.002053 |
S | 357 | R357K | aGa | aAa | 1 | 1 | B.1.240 | 0.000216 |
S | 357 | R357del | AGA | --- | 1 | 1 | B.1.242 | 0.018868 |
S | 357 | R357M | aGA | aTG | 1 | 1 | B.1.258 | 0.000067 |
S | 357 | R357R | agA | agG | 1 | 1 | B.1.258 | 0.000067 |
S | 357 | R357S | agA | agT | 1 | 1 | B.1.258 | 0.000067 |
S | 357 | R357D | AGA | GAT | 1 | 1 | B.1.258 | 0.000067 |
S | 357 | R357X | Aga | Tga | 1 | 1 | B.1.258 | 0.000067 |
S | 357 | R357N | aGA | aAT | 1 | 1 | B.1.258 | 0.000067 |
S | 357 | R357E | AGa | GAa | 1 | 1 | B.1.258.11 | 0.000396 |
S | 357 | R357N | aGA | aAT | 1 | 1 | B.1.258.11 | 0.000396 |
S | 357 | R357C | AgA | TgT | 1 | 1 | B.1.258.11 | 0.000396 |
S | 357 | R357Y | AGA | TAT | 1 | 1 | B.1.258.11 | 0.000396 |
S | 357 | R357K | aGa | aAa | 1 | 1 | B.1.258.11 | 0.000396 |
S | 357 | R357D | AGA | GAT | 1 | 1 | B.1.258.11 | 0.000396 |
S | 357 | R357I | aGa | aTa | 1 | 1 | B.1.258.11 | 0.000396 |
S | 357 | R357V | AGa | GTa | 1 | 1 | B.1.258.11 | 0.000396 |
S | 357 | R357S | agA | agT | 1 | 1 | B.1.258.11 | 0.000396 |
S | 357 | R357C | AgA | TgC | 1 | 1 | B.1.258.17 | 0.000104 |
S | 357 | R357R | agA | agG | 1 | 1 | B.1.291 | 0.019231 |
S | 357 | R357I | aGa | aTa | 1 | 1 | B.1.301 | 0.005917 |
S | 357 | R357K | aGa | aAa | 1 | 1 | B.1.351 | 0.00003 |
S | 357 | R357del | AGA | --- | 1 | 1 | B.1.369 | 0.000285 |
S | 357 | R357I | aGa | aTa | 1 | 1 | B.1.391 | 0.001127 |
S | 357 | R357del | AGA | --- | 1 | 1 | B.1.409 | 0.000781 |
S | 357 | R357M | aGA | aTG | 1 | 1 | B.1.417 | 0.028571 |
S | 357 | R357F | AGA | TTT | 1 | 1 | B.1.417 | 0.028571 |
S | 357 | R357W | AgA | TgG | 1 | 1 | B.1.417 | 0.028571 |
S | 357 | R357C | AgA | TgT | 1 | 1 | B.1.417 | 0.028571 |
S | 357 | R357Y | AGA | TAT | 1 | 1 | B.1.417 | 0.028571 |
S | 357 | R357S | agA | agT | 1 | 1 | B.1.417 | 0.028571 |
S | 357 | R357N | aGA | aAT | 1 | 1 | B.1.417 | 0.028571 |
S | 357 | R357R | agA | agG | 1 | 1 | B.1.417 | 0.028571 |
S | 357 | R357D | AGA | GAT | 1 | 1 | B.1.417 | 0.028571 |
S | 357 | R357R | agA | agG | 1 | 1 | B.1.525 | 0.000113 |
S | 357 | R357K | aGa | aAa | 1 | 1 | B.1.525 | 0.000113 |
S | 357 | R357K | aGa | aAa | 1 | 1 | B.1.580 | 0.004065 |
S | 357 | R357del1 | aGa | a-a | 1 | 1 | B.1.596 | 0.000087 |
S | 357 | R357R | Aga | Cga | 1 | 1 | B.1.617.1 | 0.000129 |
S | 357 | R357del | AGA | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 357 | R357K | aGa | aAa | 1 | 1 | B.1.621 | 0.000089 |
S | 357 | R357R | Aga | Cga | 1 | 1 | B.1.623 | 0.000536 |
S | 357 | R357I | aGa | aTa | 1 | 1 | B.1.623 | 0.000536 |
S | 357 | R357C | AgA | TgT | 1 | 1 | B.1.78 | 0.008547 |
S | 357 | R357S | agA | agT | 1 | 1 | B.1.78 | 0.008547 |
S | 357 | R357X | Aga | Tga | 1 | 1 | B.1.78 | 0.008547 |
S | 357 | R357F | AGA | TTT | 1 | 1 | B.1.78 | 0.008547 |
S | 357 | R357L | AGa | TTa | 1 | 1 | B.1.78 | 0.008547 |
S | 357 | R357K | aGa | aAa | 1 | 1 | B.4.8 | 0.071429 |
S | 357 | R357K | aGa | aAa | 1 | 1 | B.55 | 0.00295 |
S | 357 | R357K | aGa | aAa | 1 | 1 | B.60 | 0.015873 |
S | 357 | R357K | aGa | aAa | 1 | 1 | C.37 | 0.000116 |
S | 357 | R357I | aGa | aTa | 1 | 1 | D.2 | 0.000075 |
S | 357 | R357K | aGa | aAa | 1 | 1 | D.2 | 0.000075 |
S | 357 | R357R | agA | agG | 1 | 1 | N.9 | 0.005952 |
S | 357 | R357K | aGa | aAa | 1 | 1 | P.1 | 0.000016 |
S | 357 | R357I | aGa | aTa | 1 | 1 | P.1 | 0.000016 |
S | 357 | R357K | aGa | aAa | 1 | 1 | P.1.14 | 0.000048 |
S | 357 | R357I | aGa | aTa | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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