CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 355

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S355R355RsynagGagA115910520.90767922625-22627
S355R355RsynAggCgg11591070.09232122625-22627
S355R355SnonsynagGagC156870.55769222625-22627
S355R355SnonsynagGagT156690.44230822625-22627
S355R355deldelAGG---3232122625-22627
S355R355del1delagGag-1370.53846222625-22627
S355R355del1delaGga-g1340.30769222625-22627
S355R355del1delAgg-gg1320.15384622625-22627
S355R355MnonsynaGgaTg77122625-22627
S355R355GnonsynAggGgg66122625-22627
S355R355TnonsynaGgaCg430.7522625-22627
S355R355TnonsynaGGaCA410.2522625-22627
S355R355KnonsynaGgaAg33122625-22627
S355R355QnonsynAGgCAg33122625-22627
S355R355WnonsynAggTgg22122625-22627
S355R355del2delAGg--g22122625-22627
S355R355CnonsynAgGTgT11122625-22627

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S355R355RagGagA10521159All0.000201
S355R355RAggCgg1071159All0.00002
S355R355RagGagA409409B.1.1.70.000366
S355R355SagGagC87156All0.000017
S355R355SagGagT69156All0.000013
S355R355RagGagA9595AD.20.020801
S355R355RagGagA6868B.1.243.20.985507
S355R355RAggCgg5460B.1.1770.000711
S355R355RagGagA660B.1.1770.000079
S355R355RagGagA5757B.1.1.491
S355R355SagGagT3052B.10.000275
S355R355SagGagC2252B.10.000202
S355R355RagGagA4141B.1.4290.000965
S355R355RagGagA3838AY.40.000059
S355R355delAGG---3232All0.000006
S355R355SagGagC2626AY.290.00041
S355R355RagGagA2424B.1.1.2140.001331
S355R355RagGagA2224B.1.617.20.000083
S355R355RAggCgg224B.1.617.20.000008
S355R355RagGagA2222B.1.20.000194
S355R355RagGagA1921AY.30.000189
S355R355RAggCgg221AY.30.00002
S355R355RagGagA1821B.10.000165
S355R355RAggCgg321B.10.000027
S355R355RagGagA1919AY.870.01582
S355R355RagGagA1919B.1.36.290.009829
S355R355RagGagA917AY.440.000055
S355R355RAggCgg817AY.440.000049
S355R355RAggCgg1616B.1.4270.000808
S355R355SagGagC1115B.1.2580.000732
S355R355SagGagT415B.1.2580.000266
S355R355RagGagA1515P.10.000236
S355R355RagGagA1014AY.430.000044
S355R355RAggCgg414AY.430.000018
S355R355del1agGag-713All0.000001
S355R355del1aGga-g413All0.000001
S355R355del1Agg-gg213All0
S355R355RagGagA1212AY.1190.000424
S355R355delAGG---1212B.1.1.70.000011
S355R355RagGagA1010B.1.438.10.001073
S355R355RagGagA99AY.270.000582
S355R355SagGagC89B.1.1.70.000007
S355R355SagGagT19B.1.1.70.000001
S355R355MaGgaTg77All0.000001
S355R355RagGagA77AY.46.60.000505
S355R355RagGagA77B.1.2580.000466
S355R355GAggGgg66All0.000001
S355R355RagGagA66AY.1030.000037
S355R355RAggCgg56AY.420.000201
S355R355RagGagA16AY.420.00004
S355R355RagGagA66B.1.1.5190.000238
S355R355SagGagC46B.1.258.110.001585
S355R355SagGagT26B.1.258.110.000793
S355R355RagGagA45B.1.10.000073
S355R355RAggCgg15B.1.10.000018
S355R355RagGagA35B.1.3510.000089
S355R355RAggCgg25B.1.3510.000059
S355R355RagGagA55B.1.3670.003962
S355R355TaGgaCg34All0.000001
S355R355TaGGaCA14All0
S355R355RAggCgg34AY.7.10.000338
S355R355RagGagA14AY.7.10.000113
S355R355RagGagA44AY.750.000224
S355R355RagGagA44B.1.5750.001214
S355R355SagGagC24B.1.617.20.000008
S355R355SagGagT24B.1.617.20.000008
S355R355RagGagA44Q.80.00066
S355R355SagGagT330.166667
S355R355QAGgCAg33All0.000001
S355R355KaGgaAg33All0.000001
S355R355RAggCgg23AY.1020.000053
S355R355RagGagA13AY.1020.000027
S355R355RagGagA33AY.250.000018
S355R355RagGagA23AY.260.000057
S355R355RAggCgg13AY.260.000028
S355R355RagGagA33AY.290.000047
S355R355delAGG---33B.10.000027
S355R355TaGgaCg33B.10.000027
S355R355SagGagT23B.1.10.000036
S355R355SagGagC13B.1.10.000018
S355R355RagGagA33B.1.1600.000094
S355R355SagGagT33B.1.1770.00004
S355R355SagGagT23B.1.2210.000142
S355R355SagGagC13B.1.2210.000071
S355R355del1agGag-33B.1.2580.0002
S355R355RagGagA33B.1.3980.008929
S355R355RagGagA33B.1.5610.001191
S355R355RagGagA33B.1.6090.001438
S355R355WAggTgg22All0
S355R355del2AGg--g22All0
S355R355RagGagA22AY.1010.000981
S355R355SagGagT12AY.230.00007
S355R355SagGagC12AY.230.00007
S355R355RagGagA22AY.390.000049
S355R355SagGagC12AY.40.000002
S355R355SagGagT12AY.40.000002
S355R355RagGagA22AY.4.20.000043
S355R355RagGagA22AY.46.40.000329
S355R355RagGagA22AY.770.002255
S355R355RagGagA22AY.9.20.000073
S355R355RagGagA22B.1.1.2220.000408
S355R355RagGagA22B.1.1.280.000622
S355R355RagGagA22B.1.1.330.000842
S355R355RAggCgg22B.1.1.3350.025974
S355R355QAGgCAg22B.1.1.70.000002
S355R355RagGagA22B.1.177.540.001213
S355R355delAGG---22B.1.20.000018
S355R355SagGagT12B.1.20.000009
S355R355SagGagC12B.1.20.000009
S355R355RagGagA22B.1.2430.000139
S355R355SagGagT12B.1.4370.020833
S355R355SagGagC12B.1.4370.020833
S355R355RagGagA22B.1.5250.000226
S355R355SagGagT22B.1.617.10.000258
S355R355RagGagA22B.1.6210.000177
S355R355SagGagC12B.1.780.008547
S355R355SagGagT12B.1.780.008547
S355R355MaGgaTg22B.60.00182
S355R355WAggTgg110.055556
S355R355CAgGTgT110.055556
S355R355RagGagA110.055556
S355R355SagGagT11A0.000387
S355R355SagGagT11AD.20.000219
S355R355CAgGTgT11All0
S355R355RagGagA11AY.100.00053
S355R355del1aGga-g11AY.1030.000006
S355R355delAGG---11AY.1070.000466
S355R355delAGG---11AY.1200.000037
S355R355RagGagA11AY.120.10.000321
S355R355RagGagA11AY.140.000088
S355R355RagGagA11AY.200.000039
S355R355RagGagA11AY.230.00007
S355R355GAggGgg11AY.23.10.000417
S355R355SagGagC11AY.29.10.000221
S355R355MaGgaTg11AY.30.00001
S355R355GAggGgg11AY.30.00001
S355R355RagGagA11AY.3.10.000085
S355R355delAGG---11AY.330.000067
S355R355SagGagC11AY.330.000067
S355R355RagGagA11AY.350.000233
S355R355SagGagC11AY.350.000233
S355R355RAggCgg11AY.39.1.10.000725
S355R355del1aGga-g11AY.40.000002
S355R355delAGG---11AY.40.000002
S355R355SagGagT11AY.420.00004
S355R355delAGG---11AY.430.000004
S355R355TaGGaCA11AY.440.000006
S355R355GAggGgg11AY.440.000006
S355R355del1aGga-g11AY.440.000006
S355R355SagGagC11AY.460.000104
S355R355RagGagA11AY.460.000104
S355R355RagGagA11AY.5.30.000337
S355R355delAGG---11AY.720.001361
S355R355RagGagA11AY.740.000116
S355R355SagGagC11AY.75.10.00018
S355R355MaGgaTg11AY.90.000068
S355R355RagGagA11AY.930.000273
S355R355RagGagA11AY.980.000079
S355R355RagGagA11B0.000128
S355R355MaGgaTg11B.10.000009
S355R355QAGgCAg11B.10.000009
S355R355GAggGgg11B.1.10.000018
S355R355delAGG---11B.1.10.000018
S355R355RagGagA11B.1.1.10.000327
S355R355SagGagT11B.1.1.10.000327
S355R355del1Agg-gg11B.1.1.2790.001121
S355R355RagGagA11B.1.1.2840.000107
S355R355RagGagA11B.1.1.3060.000438
S355R355SagGagC11B.1.1.3110.000358
S355R355MaGgaTg11B.1.1.3260.001761
S355R355RagGagA11B.1.1.4160.000905
S355R355RagGagA11B.1.1.4320.001266
S355R355KaGgaAg11B.1.1.70.000001
S355R355del1agGag-11B.1.1.70.000001
S355R355SagGagT11B.1.1600.000031
S355R355SagGagC11B.1.1660.008475
S355R355del1agGag-11B.1.1770.000013
S355R355delAGG---11B.1.177.180.00116
S355R355del1agGag-11B.1.177.500.004695
S355R355SagGagT11B.1.177.60.000977
S355R355delAGG---11B.1.177.620.001192
S355R355del2AGg--g11B.1.177.70.000165
S355R355RagGagA11B.1.177.860.000183
S355R355del2AGg--g11B.1.20.000009
S355R355RagGagA11B.1.2410.000812
S355R355del1agGag-11B.1.2420.018868
S355R355delAGG---11B.1.2580.000067
S355R355RagGagA11B.1.258.110.000396
S355R355MaGgaTg11B.1.2600.003344
S355R355RagGagA11B.1.360.000146
S355R355del1aGga-g11B.1.3690.000285
S355R355delAGG---11B.1.3690.000285
S355R355RagGagA11B.1.4020.009804
S355R355delAGG---11B.1.4090.000781
S355R355SagGagT11B.1.4170.028571
S355R355RagGagA11B.1.4170.028571
S355R355WAggTgg11B.1.4270.00005
S355R355KaGgaAg11B.1.4460.02
S355R355RagGagA11B.1.4710.002732
S355R355SagGagT11B.1.5250.000113
S355R355SagGagT11B.1.5960.000087
S355R355SagGagT11B.1.6090.000479
S355R355RagGagA11B.1.617.10.000129
S355R355delAGG---11B.1.617.20.000004
S355R355SagGagT11B.1.6190.000871
S355R355delAGG---11B.1.6200.000946
S355R355RAggCgg11B.60.00091
S355R355RagGagA11C.300.001727
S355R355RagGagA11C.350.000774
S355R355GAggGgg11D.20.000075
S355R355RagGagA11L.30.003546
S355R355RagGagA11N.10.016949
S355R355KaGgaAg11N.60.007092
S355R355SagGagT11P.1.10.000318
S355R355SagGagT11P.1.120.000484
S355R355GAggGgg11P.1.150.000232
S355R355delAGG---11Q.10.000126
S355R355del1Agg-gg11Q.30.000145