CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 346 | R346K | nonsyn | aGa | aAa | 14782 | 14771 | 0.999256 | 22598-22600 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 346 | R346K | aGa | aAa | 14771 | 14782 | All | 0.002825 |
S | 346 | R346K | aGa | aAa | 11080 | 11090 | B.1.621 | 0.980791 |
S | 346 | R346K | aGa | aAa | 1942 | 1942 | B.1.621.1 | 0.982296 |
S | 346 | R346K | aGa | aAa | 259 | 259 | B.1.1.7 | 0.000232 |
S | 346 | R346K | aGa | aAa | 173 | 173 | B.1 | 0.001585 |
S | 346 | R346K | aGa | aAa | 165 | 165 | B.1.232 | 0.088662 |
S | 346 | R346K | aGa | aAa | 154 | 154 | B.1.1.348 | 0.122611 |
S | 346 | R346K | aGa | aAa | 128 | 128 | B.1.415.1 | 0.969697 |
S | 346 | R346K | aGa | aAa | 100 | 100 | B.1.221 | 0.007103 |
S | 346 | R346K | aGa | aAa | 79 | 79 | AY.103 | 0.000491 |
S | 346 | R346K | aGa | aAa | 68 | 68 | AY.33 | 0.004541 |
S | 346 | R346K | aGa | aAa | 43 | 43 | B.1.526 | 0.001011 |
S | 346 | R346K | aGa | aAa | 40 | 40 | B.1.258.14 | 0.039216 |
S | 346 | R346K | aGa | aAa | 39 | 39 | B.1.617.2 | 0.000147 |
S | 346 | R346K | aGa | aAa | 36 | 36 | AY.43 | 0.000159 |
S | 346 | R346K | aGa | aAa | 34 | 34 | B.1.623 | 0.01824 |
S | 346 | R346K | aGa | aAa | 26 | 26 | B.1.2 | 0.000229 |
S | 346 | R346K | aGa | aAa | 25 | 25 | AY.44 | 0.000152 |
S | 346 | R346K | aGa | aAa | 22 | 22 | P.1 | 0.000347 |
S | 346 | R346K | aGa | aAa | 21 | 21 | B.1.1.519 | 0.000834 |
S | 346 | R346K | aGa | aAa | 20 | 20 | B.1.1 | 0.000363 |
S | 346 | R346K | aGa | aAa | 15 | 15 | B.1.429 | 0.000353 |
S | 346 | R346K | aGa | aAa | 14 | 14 | B | 0.001789 |
S | 346 | R346K | aGa | aAa | 14 | 14 | B.1.177.60 | 0.003058 |
S | 346 | R346K | aGa | aAa | 12 | 12 | AY.102 | 0.000318 |
S | 346 | R346K | aGa | aAa | 12 | 12 | B.1.177.6 | 0.011719 |
S | 346 | R346K | aGa | aAa | 11 | 11 | AY.4 | 0.000017 |
S | 346 | R346K | aGa | aAa | 10 | 10 | B.1.36 | 0.001459 |
S | 346 | R346K | aGa | aAa | 9 | 9 | AY.23 | 0.000628 |
S | 346 | R346K | aGa | aAa | 8 | 9 | AY.25 | 0.000048 |
S | 346 | R346K | aGa | aAa | 8 | 8 | AY.20 | 0.000311 |
S | 346 | R346K | aGa | aAa | 8 | 8 | AY.39 | 0.000198 |
S | 346 | R346K | aGa | aAa | 6 | 6 | B.1.630 | 0.031414 |
S | 346 | R346K | aGa | aAa | 5 | 5 | A.30 | 0.714286 |
S | 346 | R346K | aGa | aAa | 5 | 5 | B.1.240 | 0.001078 |
S | 346 | R346K | aGa | aAa | 5 | 5 | B.1.243 | 0.000348 |
S | 346 | R346K | aGa | aAa | 5 | 5 | B.1.367 | 0.003962 |
S | 346 | R346K | aGa | aAa | 5 | 5 | B.1.596 | 0.000436 |
S | 346 | R346K | aGa | aAa | 5 | 5 | B.1.637 | 0.000365 |
S | 346 | R346K | aGa | aAa | 5 | 5 | P.1.15 | 0.001162 |
S | 346 | R346K | aGa | aAa | 4 | 4 | AY.116 | 0.001147 |
S | 346 | R346K | aGa | aAa | 4 | 4 | AY.119 | 0.000141 |
S | 346 | R346K | aGa | aAa | 4 | 4 | B.1.258 | 0.000266 |
S | 346 | R346K | aGa | aAa | 4 | 4 | B.1.351 | 0.000119 |
S | 346 | R346K | aGa | aAa | 4 | 4 | C.1.2 | 0.017021 |
S | 346 | R346K | aGa | aAa | 4 | 4 | P.1.17 | 0.000647 |
S | 346 | R346K | aGa | aAa | 4 | 4 | Q.8 | 0.00066 |
S | 346 | R346K | aGa | aAa | 3 | 3 | AY.2 | 0.001068 |
S | 346 | R346K | aGa | aAa | 3 | 3 | AY.26 | 0.000085 |
S | 346 | R346K | aGa | aAa | 3 | 3 | AY.46.6 | 0.000217 |
S | 346 | R346K | aGa | aAa | 3 | 3 | AY.99.2 | 0.000276 |
S | 346 | R346K | aGa | aAa | 3 | 3 | B.1.1.306 | 0.001315 |
S | 346 | R346K | aGa | aAa | 3 | 3 | B.1.1.523 | 0.004687 |
S | 346 | R346K | aGa | aAa | 3 | 3 | B.1.177 | 0.00004 |
S | 346 | R346K | aGa | aAa | 3 | 3 | B.1.564 | 0.001278 |
S | 346 | R346K | aGa | aAa | 3 | 3 | P.1.12 | 0.001452 |
S | 346 | R346K | aGa | aAa | 3 | 3 | P.1.14 | 0.000143 |
S | 346 | R346K | aGa | aAa | 2 | 2 | A | 0.000774 |
S | 346 | R346K | aGa | aAa | 2 | 2 | AY.16 | 0.000759 |
S | 346 | R346K | aGa | aAa | 2 | 2 | AY.3 | 0.00002 |
S | 346 | R346K | aGa | aAa | 2 | 2 | AY.5 | 0.000041 |
S | 346 | R346K | aGa | aAa | 2 | 2 | AY.68 | 0.000547 |
S | 346 | R346K | aGa | aAa | 2 | 2 | B.1.1.267 | 0.020202 |
S | 346 | R346K | aGa | aAa | 2 | 2 | B.1.1.28 | 0.000622 |
S | 346 | R346K | aGa | aAa | 2 | 2 | B.1.1.318 | 0.000604 |
S | 346 | R346K | aGa | aAa | 2 | 2 | B.1.177.73 | 0.001133 |
S | 346 | R346K | aGa | aAa | 2 | 2 | B.1.234 | 0.000264 |
S | 346 | R346K | aGa | aAa | 2 | 2 | B.1.258.3 | 0.00335 |
S | 346 | R346K | aGa | aAa | 2 | 2 | B.1.311 | 0.000549 |
S | 346 | R346K | aGa | aAa | 2 | 2 | B.1.324 | 0.00321 |
S | 346 | R346K | aGa | aAa | 2 | 2 | B.1.480 | 0.004975 |
S | 346 | R346K | aGa | aAa | 2 | 2 | B.1.533 | 0.019231 |
S | 346 | R346K | aGa | aAa | 2 | 2 | B.1.564.1 | 0.003155 |
S | 346 | R346K | aGa | aAa | 2 | 2 | B.1.595 | 0.000522 |
S | 346 | R346K | aGa | aAa | 2 | 2 | B.1.633 | 0.083333 |
S | 346 | R346K | aGa | aAa | 2 | 2 | C.37 | 0.000232 |
S | 346 | R346K | aGa | aAa | 2 | 2 | Q.3 | 0.00029 |
S | 346 | R346K | aGa | aAa | 2 | 2 | R.1 | 0.00018 |
S | 346 | R346K | aGa | aAa | 1 | 1 | A.1 | 0.000282 |
S | 346 | R346K | aGa | aAa | 1 | 1 | A.2.4 | 0.003367 |
S | 346 | R346K | aGa | aAa | 1 | 1 | AY.113 | 0.000142 |
S | 346 | R346K | aGa | aAa | 1 | 1 | AY.29 | 0.000016 |
S | 346 | R346K | aGa | aAa | 1 | 1 | AY.34.1 | 0.00051 |
S | 346 | R346K | aGa | aAa | 1 | 1 | AY.36 | 0.000148 |
S | 346 | R346K | aGa | aAa | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 346 | R346K | aGa | aAa | 1 | 1 | AY.4.3 | 0.000842 |
S | 346 | R346K | aGa | aAa | 1 | 1 | AY.46 | 0.000104 |
S | 346 | R346K | aGa | aAa | 1 | 1 | AY.46.1 | 0.001027 |
S | 346 | R346K | aGa | aAa | 1 | 1 | AY.53 | 0.000288 |
S | 346 | R346K | aGa | aAa | 1 | 1 | AY.58 | 0.000907 |
S | 346 | R346K | aGa | aAa | 1 | 1 | AY.9 | 0.000068 |
S | 346 | R346K | aGa | aAa | 1 | 1 | AY.9.2 | 0.000037 |
S | 346 | R346K | aGa | aAa | 1 | 1 | AY.92 | 0.000287 |
S | 346 | R346K | aGa | aAa | 1 | 1 | AY.94 | 0.000443 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.1.1 | 0.000327 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.1.189 | 0.001513 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.1.214 | 0.000055 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.1.236 | 0.006897 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.1.284 | 0.000107 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.1.354 | 0.004386 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.1.37 | 0.000193 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.1.448 | 0.002033 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.1.526 | 0.003546 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.160.7 | 0.002079 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.177.51 | 0.004566 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.177.52 | 0.001757 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.177.57 | 0.000281 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.214.2 | 0.0006 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.236 | 0.002053 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.237 | 0.004975 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.351.5 | 0.0006 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.375 | 0.00082 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.396 | 0.000706 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.399 | 0.001934 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.409 | 0.000781 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.427 | 0.00005 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.463 | 0.008065 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.525 | 0.000113 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.561 | 0.000397 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.576 | 0.000907 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.582 | 0.000491 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.617.1 | 0.000129 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.627 | 0.00202 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.636 | 0.006711 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.638 | 0.052632 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.1.96 | 0.018868 |
S | 346 | R346K | aGa | aAa | 1 | 1 | B.4 | 0.002208 |
S | 346 | R346K | aGa | aAa | 1 | 1 | C.36.3.1 | 0.002717 |
S | 346 | R346K | aGa | aAa | 1 | 1 | C.37.1 | 0.002618 |
S | 346 | R346K | aGa | aAa | 1 | 1 | P.1.10 | 0.000269 |
S | 346 | R346K | aGa | aAa | 1 | 1 | P.2 | 0.000187 |
S | 346 | R346K | aGa | aAa | 1 | 1 | Q.4 | 0.000455 |
S | 346 | R346K | aGa | aAa | 1 | 1 | Q.6 | 0.006623 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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