CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 344 | A344A | syn | gcC | gcA | 1722 | 888 | 0.515679 | 22592-22594 | |
S | 344 | A344A | syn | gcC | gcT | 1722 | 780 | 0.452962 | 22592-22594 | |
S | 344 | A344A | syn | gcC | gcG | 1722 | 54 | 0.0313589 | 22592-22594 | |
S | 344 | A344S | nonsyn | Gcc | Tcc | 1585 | 1584 | 0.999369 | 22592-22594 | |
S | 344 | A344S | nonsyn | GcC | TcT | 1585 | 1 | 0.000630915 | 22592-22594 | |
S | 344 | A344T | nonsyn | Gcc | Acc | 225 | 223 | 0.991111 | 22592-22594 | |
S | 344 | A344T | nonsyn | GcC | AcA | 225 | 2 | 0.00888889 | 22592-22594 | |
S | 344 | A344V | nonsyn | gCc | gTc | 124 | 121 | 0.975806 | 22592-22594 | |
S | 344 | A344V | nonsyn | gCC | gTA | 124 | 2 | 0.016129 | 22592-22594 | |
S | 344 | A344V | nonsyn | gCC | gTG | 124 | 1 | 0.00806452 | 22592-22594 | |
S | 344 | A344del | del | GCC | --- | 24 | 24 | 1 | 22592-22594 | |
S | 344 | A344D | nonsyn | gCc | gAc | 22 | 22 | 1 | 22592-22594 | |
S | 344 | A344P | nonsyn | Gcc | Ccc | 11 | 11 | 1 | 22592-22594 | |
S | 344 | A344G | nonsyn | gCc | gGc | 9 | 9 | 1 | 22592-22594 | |
S | 344 | A344F | nonsyn | GCC | TTT | 9 | 5 | 0.555556 | 22592-22594 | |
S | 344 | A344F | nonsyn | GCc | TTc | 9 | 4 | 0.444444 | 22592-22594 | |
S | 344 | A344del1 | del | Gcc | -cc | 5 | 3 | 0.6 | 22592-22594 | |
S | 344 | A344I | nonsyn | GCc | ATc | 5 | 3 | 0.6 | 22592-22594 | |
S | 344 | A344I | nonsyn | GCC | ATA | 5 | 2 | 0.4 | 22592-22594 | |
S | 344 | A344del1 | del | GCC | AT- | 5 | 2 | 0.4 | 22592-22594 | |
S | 344 | A344R | nonsyn | GCc | CGc | 1 | 1 | 1 | 22592-22594 | |
S | 344 | A344del2 | del | gCC | g-- | 1 | 1 | 1 | 22592-22594 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 344 | A344A | gcC | gcA | 888 | 1722 | All | 0.00017 |
S | 344 | A344A | gcC | gcT | 780 | 1722 | All | 0.000149 |
S | 344 | A344A | gcC | gcG | 54 | 1722 | All | 0.00001 |
S | 344 | A344S | Gcc | Tcc | 1584 | 1585 | All | 0.000303 |
S | 344 | A344S | GcC | TcT | 1 | 1585 | All | 0 |
S | 344 | A344A | gcC | gcA | 821 | 1021 | B.1.2 | 0.007229 |
S | 344 | A344A | gcC | gcT | 164 | 1021 | B.1.2 | 0.001444 |
S | 344 | A344A | gcC | gcG | 36 | 1021 | B.1.2 | 0.000317 |
S | 344 | A344S | Gcc | Tcc | 496 | 496 | AY.43 | 0.002198 |
S | 344 | A344T | Gcc | Acc | 223 | 225 | All | 0.000043 |
S | 344 | A344T | GcC | AcA | 2 | 225 | All | 0 |
S | 344 | A344A | gcC | gcT | 134 | 142 | B.1.1.7 | 0.00012 |
S | 344 | A344A | gcC | gcA | 5 | 142 | B.1.1.7 | 0.000004 |
S | 344 | A344A | gcC | gcG | 3 | 142 | B.1.1.7 | 0.000003 |
S | 344 | A344A | gcC | gcT | 130 | 132 | AY.4 | 0.000202 |
S | 344 | A344A | gcC | gcA | 2 | 132 | AY.4 | 0.000003 |
S | 344 | A344V | gCc | gTc | 121 | 124 | All | 0.000023 |
S | 344 | A344V | gCC | gTA | 2 | 124 | All | 0 |
S | 344 | A344V | gCC | gTG | 1 | 124 | All | 0 |
S | 344 | A344S | Gcc | Tcc | 111 | 112 | B.1.1.7 | 0.000099 |
S | 344 | A344S | GcC | TcT | 1 | 112 | B.1.1.7 | 0.000001 |
S | 344 | A344S | Gcc | Tcc | 94 | 94 | AY.4 | 0.000146 |
S | 344 | A344S | Gcc | Tcc | 60 | 60 | B.1.429 | 0.001412 |
S | 344 | A344S | Gcc | Tcc | 59 | 59 | B.1.617.2 | 0.000222 |
S | 344 | A344T | Gcc | Acc | 55 | 55 | AY.120 | 0.002045 |
S | 344 | A344S | Gcc | Tcc | 54 | 54 | P.1 | 0.000851 |
S | 344 | A344S | Gcc | Tcc | 53 | 53 | AY.25 | 0.000319 |
S | 344 | A344A | gcC | gcT | 46 | 52 | AY.103 | 0.000286 |
S | 344 | A344A | gcC | gcA | 6 | 52 | AY.103 | 0.000037 |
S | 344 | A344S | Gcc | Tcc | 51 | 51 | N.9 | 0.303571 |
S | 344 | A344S | Gcc | Tcc | 48 | 48 | AY.103 | 0.000298 |
S | 344 | A344A | gcC | gcT | 42 | 45 | B.1.617.2 | 0.000158 |
S | 344 | A344A | gcC | gcA | 3 | 45 | B.1.617.2 | 0.000011 |
S | 344 | A344S | Gcc | Tcc | 36 | 36 | AY.4.2 | 0.000781 |
S | 344 | A344S | Gcc | Tcc | 33 | 33 | AY.44 | 0.000201 |
S | 344 | A344V | gCc | gTc | 32 | 33 | B.1.1.7 | 0.000029 |
S | 344 | A344V | gCC | gTG | 1 | 33 | B.1.1.7 | 0.000001 |
S | 344 | A344S | Gcc | Tcc | 31 | 31 | B.1.594 | 0.96875 |
S | 344 | A344S | Gcc | Tcc | 29 | 29 | B.1.1 | 0.000526 |
S | 344 | A344S | Gcc | Tcc | 27 | 27 | AY.27 | 0.001747 |
S | 344 | A344A | gcC | gcT | 27 | 27 | AY.3 | 0.000269 |
S | 344 | A344S | Gcc | Tcc | 26 | 26 | B.1.2 | 0.000229 |
S | 344 | A344del | GCC | --- | 24 | 24 | All | 0.000005 |
S | 344 | A344A | gcC | gcT | 22 | 23 | AY.43 | 0.000097 |
S | 344 | A344A | gcC | gcA | 1 | 23 | AY.43 | 0.000004 |
S | 344 | A344D | gCc | gAc | 22 | 22 | All | 0.000004 |
S | 344 | A344A | gcC | gcT | 22 | 22 | B.1.177 | 0.00029 |
S | 344 | A344T | Gcc | Acc | 21 | 21 | AY.26 | 0.000595 |
S | 344 | A344A | gcC | gcA | 13 | 21 | AY.44 | 0.000079 |
S | 344 | A344A | gcC | gcT | 8 | 21 | AY.44 | 0.000049 |
S | 344 | A344A | gcC | gcT | 15 | 20 | B.1 | 0.000137 |
S | 344 | A344A | gcC | gcA | 5 | 20 | B.1 | 0.000046 |
S | 344 | A344S | Gcc | Tcc | 20 | 20 | B.1.177.69 | 0.029674 |
S | 344 | A344T | Gcc | Acc | 18 | 18 | B.1.1.7 | 0.000016 |
S | 344 | A344A | gcC | gcT | 18 | 18 | B.1.362 | 0.027735 |
S | 344 | A344S | Gcc | Tcc | 17 | 17 | AY.102 | 0.000451 |
S | 344 | A344S | Gcc | Tcc | 17 | 17 | AY.6 | 0.000699 |
S | 344 | A344S | Gcc | Tcc | 16 | 16 | AY.26 | 0.000453 |
S | 344 | A344A | gcC | gcT | 14 | 15 | AY.25 | 0.000084 |
S | 344 | A344A | gcC | gcA | 1 | 15 | AY.25 | 0.000006 |
S | 344 | A344S | Gcc | Tcc | 15 | 15 | AY.29 | 0.000237 |
S | 344 | A344V | gCc | gTc | 15 | 15 | AY.4 | 0.000023 |
S | 344 | A344T | Gcc | Acc | 15 | 15 | AY.4 | 0.000023 |
S | 344 | A344S | Gcc | Tcc | 15 | 15 | B.1.564.1 | 0.023659 |
S | 344 | A344A | gcC | gcT | 11 | 13 | B.1.525 | 0.001245 |
S | 344 | A344A | gcC | gcG | 2 | 13 | B.1.525 | 0.000226 |
S | 344 | A344T | Gcc | Acc | 12 | 12 | AY.67 | 0.005571 |
S | 344 | A344S | Gcc | Tcc | 12 | 12 | B.1.596 | 0.001046 |
S | 344 | A344P | Gcc | Ccc | 11 | 11 | All | 0.000002 |
S | 344 | A344T | Gcc | Acc | 11 | 11 | AY.103 | 0.000068 |
S | 344 | A344S | Gcc | Tcc | 10 | 10 | AY.120 | 0.000372 |
S | 344 | A344S | Gcc | Tcc | 10 | 10 | AY.99.2 | 0.000922 |
S | 344 | A344T | Gcc | Acc | 10 | 10 | B.1.2 | 0.000088 |
S | 344 | A344T | Gcc | Acc | 10 | 10 | B.1.617.2 | 0.000038 |
S | 344 | A344G | gCc | gGc | 9 | 9 | All | 0.000002 |
S | 344 | A344F | GCC | TTT | 5 | 9 | All | 0.000001 |
S | 344 | A344F | GCc | TTc | 4 | 9 | All | 0.000001 |
S | 344 | A344S | Gcc | Tcc | 9 | 9 | AY.33 | 0.000601 |
S | 344 | A344A | gcC | gcT | 8 | 8 | AY.47 | 0.000249 |
S | 344 | A344S | Gcc | Tcc | 8 | 8 | AY.75.1 | 0.001442 |
S | 344 | A344S | Gcc | Tcc | 8 | 8 | AY.98 | 0.000632 |
S | 344 | A344A | gcC | gcA | 7 | 8 | B.1.596 | 0.00061 |
S | 344 | A344A | gcC | gcT | 1 | 8 | B.1.596 | 0.000087 |
S | 344 | A344V | gCc | gTc | 8 | 8 | B.1.617.2 | 0.00003 |
S | 344 | A344S | Gcc | Tcc | 7 | 7 | AY.118 | 0.000439 |
S | 344 | A344S | Gcc | Tcc | 7 | 7 | AY.20 | 0.000272 |
S | 344 | A344T | Gcc | Acc | 7 | 7 | AY.25 | 0.000042 |
S | 344 | A344S | Gcc | Tcc | 7 | 7 | AY.3 | 0.00007 |
S | 344 | A344A | gcC | gcT | 7 | 7 | AY.33 | 0.000467 |
S | 344 | A344A | gcC | gcT | 7 | 7 | B.1.1.1 | 0.002287 |
S | 344 | A344S | Gcc | Tcc | 7 | 7 | B.1.1.519 | 0.000278 |
S | 344 | A344A | gcC | gcT | 7 | 7 | P.1 | 0.00011 |
S | 344 | A344S | Gcc | Tcc | 6 | 6 | AY.106 | 0.002009 |
S | 344 | A344S | Gcc | Tcc | 6 | 6 | AY.47 | 0.000187 |
S | 344 | A344T | Gcc | Acc | 6 | 6 | AY.75.1 | 0.001082 |
S | 344 | A344V | gCc | gTc | 6 | 6 | AY.9.2 | 0.00022 |
S | 344 | A344S | Gcc | Tcc | 6 | 6 | B.1 | 0.000055 |
S | 344 | A344S | Gcc | Tcc | 6 | 6 | B.1.1.448 | 0.012195 |
S | 344 | A344del | GCC | --- | 6 | 6 | B.1.1.7 | 0.000005 |
S | 344 | A344S | Gcc | Tcc | 6 | 6 | B.1.177 | 0.000079 |
S | 344 | A344S | Gcc | Tcc | 6 | 6 | B.1.351 | 0.000178 |
S | 344 | A344A | gcC | gcT | 6 | 6 | B.1.375 | 0.004918 |
S | 344 | A344A | gcC | gcT | 6 | 6 | B.1.621 | 0.000531 |
S | 344 | A344A | gcC | gcG | 6 | 6 | Q.3 | 0.00087 |
S | 344 | A344I | GCc | ATc | 3 | 5 | All | 0.000001 |
S | 344 | A344del1 | Gcc | -cc | 3 | 5 | All | 0.000001 |
S | 344 | A344del1 | GCC | AT- | 2 | 5 | All | 0 |
S | 344 | A344I | GCC | ATA | 2 | 5 | All | 0 |
S | 344 | A344A | gcC | gcT | 4 | 5 | AY.102 | 0.000106 |
S | 344 | A344A | gcC | gcA | 1 | 5 | AY.102 | 0.000027 |
S | 344 | A344A | gcC | gcT | 5 | 5 | AY.118 | 0.000313 |
S | 344 | A344D | gCc | gAc | 5 | 5 | AY.4 | 0.000008 |
S | 344 | A344S | Gcc | Tcc | 5 | 5 | AY.54 | 0.000477 |
S | 344 | A344S | Gcc | Tcc | 5 | 5 | AY.58 | 0.004537 |
S | 344 | A344A | gcC | gcT | 5 | 5 | AY.9.2 | 0.000184 |
S | 344 | A344V | gCc | gTc | 5 | 5 | B.1 | 0.000046 |
S | 344 | A344F | GCC | TTT | 4 | 5 | B.1.1.7 | 0.000004 |
S | 344 | A344F | GCc | TTc | 1 | 5 | B.1.1.7 | 0.000001 |
S | 344 | A344A | gcC | gcT | 5 | 5 | B.1.351 | 0.000149 |
S | 344 | A344A | gcC | gcA | 5 | 5 | B.1.595 | 0.001305 |
S | 344 | A344S | Gcc | Tcc | 5 | 5 | P.1.14 | 0.000239 |
S | 344 | A344T | Gcc | Acc | 2 | 4 | 0.111111 | |
S | 344 | A344V | gCc | gTc | 2 | 4 | 0.111111 | |
S | 344 | A344T | GcC | AcA | 2 | 4 | 0.111111 | |
S | 344 | A344I | GCC | ATA | 2 | 4 | 0.111111 | |
S | 344 | A344I | GCc | ATc | 2 | 4 | 0.111111 | |
S | 344 | A344V | gCC | gTA | 2 | 4 | 0.111111 | |
S | 344 | A344S | Gcc | Tcc | 4 | 4 | AY.119 | 0.000141 |
S | 344 | A344V | gCc | gTc | 4 | 4 | AY.43 | 0.000018 |
S | 344 | A344S | Gcc | Tcc | 4 | 4 | AY.48 | 0.00186 |
S | 344 | A344T | Gcc | Acc | 4 | 4 | AY.5 | 0.000083 |
S | 344 | A344T | Gcc | Acc | 4 | 4 | AY.70 | 0.000834 |
S | 344 | A344A | gcC | gcT | 3 | 4 | AY.98 | 0.000237 |
S | 344 | A344A | gcC | gcG | 1 | 4 | AY.98 | 0.000079 |
S | 344 | A344A | gcC | gcG | 4 | 4 | B.1.1.362 | 0.022472 |
S | 344 | A344S | Gcc | Tcc | 4 | 4 | B.1.427 | 0.000202 |
S | 344 | A344A | gcC | gcA | 2 | 4 | B.1.466.2 | 0.000782 |
S | 344 | A344A | gcC | gcT | 2 | 4 | B.1.466.2 | 0.000782 |
S | 344 | A344T | Gcc | Acc | 4 | 4 | B.1.637 | 0.000292 |
S | 344 | A344S | Gcc | Tcc | 4 | 4 | B.1.637 | 0.000292 |
S | 344 | A344A | gcC | gcT | 3 | 3 | AP.1 | 0.004505 |
S | 344 | A344V | gCc | gTc | 3 | 3 | AY.103 | 0.000019 |
S | 344 | A344D | gCc | gAc | 3 | 3 | AY.103 | 0.000019 |
S | 344 | A344V | gCc | gTc | 3 | 3 | AY.120 | 0.000112 |
S | 344 | A344V | gCc | gTc | 3 | 3 | AY.2 | 0.001068 |
S | 344 | A344S | Gcc | Tcc | 3 | 3 | AY.23 | 0.000209 |
S | 344 | A344V | gCc | gTc | 3 | 3 | AY.25 | 0.000018 |
S | 344 | A344A | gcC | gcT | 3 | 3 | AY.26 | 0.000085 |
S | 344 | A344S | Gcc | Tcc | 3 | 3 | AY.3.1 | 0.000256 |
S | 344 | A344S | Gcc | Tcc | 3 | 3 | AY.39 | 0.000074 |
S | 344 | A344T | Gcc | Acc | 3 | 3 | AY.44 | 0.000018 |
S | 344 | A344S | Gcc | Tcc | 3 | 3 | AY.45 | 0.000365 |
S | 344 | A344S | Gcc | Tcc | 3 | 3 | AY.5.4 | 0.00083 |
S | 344 | A344A | gcC | gcA | 3 | 3 | AY.51 | 0.002727 |
S | 344 | A344V | gCc | gTc | 3 | 3 | AY.6 | 0.000123 |
S | 344 | A344S | Gcc | Tcc | 3 | 3 | AY.75 | 0.000168 |
S | 344 | A344T | Gcc | Acc | 3 | 3 | AY.8 | 0.001818 |
S | 344 | A344G | gCc | gGc | 3 | 3 | AY.9.1 | 0.000251 |
S | 344 | A344S | Gcc | Tcc | 3 | 3 | AY.9.2 | 0.00011 |
S | 344 | A344A | gcC | gcA | 2 | 3 | B | 0.000256 |
S | 344 | A344A | gcC | gcT | 1 | 3 | B | 0.000128 |
S | 344 | A344T | Gcc | Acc | 3 | 3 | B.1 | 0.000027 |
S | 344 | A344S | Gcc | Tcc | 3 | 3 | B.1.1.284 | 0.000322 |
S | 344 | A344A | gcC | gcA | 3 | 3 | B.1.177.77 | 0.002179 |
S | 344 | A344V | gCc | gTc | 3 | 3 | B.1.2 | 0.000026 |
S | 344 | A344S | Gcc | Tcc | 3 | 3 | B.1.446 | 0.06 |
S | 344 | A344S | Gcc | Tcc | 3 | 3 | B.1.595 | 0.000783 |
S | 344 | A344S | Gcc | Tcc | 3 | 3 | B.1.8 | 0.005917 |
S | 344 | A344A | gcC | gcT | 3 | 3 | C.37 | 0.000348 |
S | 344 | A344T | Gcc | Acc | 3 | 3 | P.1.14 | 0.000143 |
S | 344 | A344del1 | GCC | AT- | 2 | 2 | 0.111111 | |
S | 344 | A344A | gcC | gcA | 2 | 2 | 0.111111 | |
S | 344 | A344S | Gcc | Tcc | 2 | 2 | AY.100 | 0.000092 |
S | 344 | A344S | Gcc | Tcc | 2 | 2 | AY.113 | 0.000285 |
S | 344 | A344V | gCc | gTc | 2 | 2 | AY.12 | 0.000632 |
S | 344 | A344S | Gcc | Tcc | 2 | 2 | AY.121 | 0.000271 |
S | 344 | A344T | Gcc | Acc | 2 | 2 | AY.20 | 0.000078 |
S | 344 | A344A | gcC | gcT | 2 | 2 | AY.29 | 0.000032 |
S | 344 | A344T | Gcc | Acc | 2 | 2 | AY.3 | 0.00002 |
S | 344 | A344T | Gcc | Acc | 2 | 2 | AY.39 | 0.000049 |
S | 344 | A344G | gCc | gGc | 2 | 2 | AY.4 | 0.000003 |
S | 344 | A344S | Gcc | Tcc | 2 | 2 | AY.42 | 0.00008 |
S | 344 | A344A | gcC | gcT | 2 | 2 | AY.42 | 0.00008 |
S | 344 | A344D | gCc | gAc | 2 | 2 | AY.44 | 0.000012 |
S | 344 | A344S | Gcc | Tcc | 2 | 2 | AY.46 | 0.000208 |
S | 344 | A344S | Gcc | Tcc | 2 | 2 | AY.46.6 | 0.000144 |
S | 344 | A344A | gcC | gcT | 2 | 2 | AY.5 | 0.000041 |
S | 344 | A344S | Gcc | Tcc | 2 | 2 | AY.5 | 0.000041 |
S | 344 | A344A | gcC | gcT | 2 | 2 | AY.5.4 | 0.000553 |
S | 344 | A344S | Gcc | Tcc | 2 | 2 | AY.77 | 0.002255 |
S | 344 | A344S | Gcc | Tcc | 2 | 2 | AY.81 | 0.003984 |
S | 344 | A344A | gcC | gcT | 2 | 2 | AY.9.1 | 0.000167 |
S | 344 | A344A | gcC | gcT | 2 | 2 | AY.93 | 0.000546 |
S | 344 | A344S | Gcc | Tcc | 2 | 2 | AY.94 | 0.000885 |
S | 344 | A344del | GCC | --- | 2 | 2 | B.1 | 0.000018 |
S | 344 | A344P | Gcc | Ccc | 2 | 2 | B.1 | 0.000018 |
S | 344 | A344D | gCc | gAc | 2 | 2 | B.1 | 0.000018 |
S | 344 | A344T | Gcc | Acc | 2 | 2 | B.1.1 | 0.000036 |
S | 344 | A344A | gcC | gcT | 2 | 2 | B.1.1 | 0.000036 |
S | 344 | A344S | Gcc | Tcc | 2 | 2 | B.1.1.1 | 0.000653 |
S | 344 | A344S | Gcc | Tcc | 2 | 2 | B.1.1.216 | 0.001781 |
S | 344 | A344D | gCc | gAc | 2 | 2 | B.1.1.7 | 0.000002 |
S | 344 | A344S | Gcc | Tcc | 2 | 2 | B.1.160.27 | 0.030303 |
S | 344 | A344del | GCC | --- | 2 | 2 | B.1.2 | 0.000018 |
S | 344 | A344S | Gcc | Tcc | 2 | 2 | B.1.36.29 | 0.001035 |
S | 344 | A344T | Gcc | Acc | 2 | 2 | B.1.36.8 | 0.002 |
S | 344 | A344S | Gcc | Tcc | 2 | 2 | B.1.470 | 0.002809 |
S | 344 | A344S | Gcc | Tcc | 2 | 2 | B.1.471 | 0.005464 |
S | 344 | A344A | gcC | gcT | 2 | 2 | B.1.526 | 0.000047 |
S | 344 | A344S | Gcc | Tcc | 2 | 2 | B.1.526 | 0.000047 |
S | 344 | A344S | Gcc | Tcc | 2 | 2 | B.1.617.1 | 0.000258 |
S | 344 | A344F | GCc | TTc | 2 | 2 | B.1.617.2 | 0.000008 |
S | 344 | A344del | GCC | --- | 2 | 2 | B.1.617.2 | 0.000008 |
S | 344 | A344A | gcC | gcT | 2 | 2 | Q.8 | 0.00033 |
S | 344 | A344P | Gcc | Ccc | 1 | 1 | 0.055556 | |
S | 344 | A344R | GCc | CGc | 1 | 1 | 0.055556 | |
S | 344 | A344G | gCc | gGc | 1 | 1 | 0.055556 | |
S | 344 | A344A | gcC | gcA | 1 | 1 | A | 0.000387 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | A.1 | 0.000282 |
S | 344 | A344T | Gcc | Acc | 1 | 1 | A.2.5 | 0.000499 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | AD.2 | 0.000219 |
S | 344 | A344R | GCc | CGc | 1 | 1 | All | 0 |
S | 344 | A344del2 | gCC | g-- | 1 | 1 | All | 0 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | AY.1 | 0.000396 |
S | 344 | A344V | gCc | gTc | 1 | 1 | AY.102 | 0.000027 |
S | 344 | A344A | gcC | gcT | 1 | 1 | AY.109 | 0.00074 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | AY.116 | 0.000287 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | AY.117 | 0.000085 |
S | 344 | A344T | Gcc | Acc | 1 | 1 | AY.119 | 0.000035 |
S | 344 | A344T | Gcc | Acc | 1 | 1 | AY.12 | 0.000316 |
S | 344 | A344V | gCc | gTc | 1 | 1 | AY.121 | 0.000135 |
S | 344 | A344T | Gcc | Acc | 1 | 1 | AY.13 | 0.000161 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | AY.13 | 0.000161 |
S | 344 | A344A | gcC | gcT | 1 | 1 | AY.13 | 0.000161 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | AY.16.1 | 0.00047 |
S | 344 | A344T | Gcc | Acc | 1 | 1 | AY.16.1 | 0.00047 |
S | 344 | A344V | gCc | gTc | 1 | 1 | AY.23 | 0.00007 |
S | 344 | A344V | gCc | gTc | 1 | 1 | AY.23.1 | 0.000417 |
S | 344 | A344del | GCC | --- | 1 | 1 | AY.26 | 0.000028 |
S | 344 | A344V | gCc | gTc | 1 | 1 | AY.27 | 0.000065 |
S | 344 | A344D | gCc | gAc | 1 | 1 | AY.3 | 0.00001 |
S | 344 | A344del | GCC | --- | 1 | 1 | AY.3 | 0.00001 |
S | 344 | A344V | gCc | gTc | 1 | 1 | AY.3 | 0.00001 |
S | 344 | A344T | Gcc | Acc | 1 | 1 | AY.3.1 | 0.000085 |
S | 344 | A344T | Gcc | Acc | 1 | 1 | AY.32 | 0.000532 |
S | 344 | A344V | gCc | gTc | 1 | 1 | AY.34 | 0.000097 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | AY.34 | 0.000097 |
S | 344 | A344T | Gcc | Acc | 1 | 1 | AY.34 | 0.000097 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | AY.34.1 | 0.00051 |
S | 344 | A344A | gcC | gcT | 1 | 1 | AY.35 | 0.000233 |
S | 344 | A344A | gcC | gcT | 1 | 1 | AY.36 | 0.000148 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | AY.37 | 0.000316 |
S | 344 | A344D | gCc | gAc | 1 | 1 | AY.39 | 0.000025 |
S | 344 | A344V | gCc | gTc | 1 | 1 | AY.39 | 0.000025 |
S | 344 | A344A | gcC | gcT | 1 | 1 | AY.39 | 0.000025 |
S | 344 | A344P | Gcc | Ccc | 1 | 1 | AY.39 | 0.000025 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | AY.39.1 | 0.00004 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | AY.39.1.1 | 0.000725 |
S | 344 | A344del | GCC | --- | 1 | 1 | AY.4 | 0.000002 |
S | 344 | A344P | Gcc | Ccc | 1 | 1 | AY.4 | 0.000002 |
S | 344 | A344V | gCc | gTc | 1 | 1 | AY.4.2 | 0.000022 |
S | 344 | A344A | gcC | gcT | 1 | 1 | AY.4.2 | 0.000022 |
S | 344 | A344A | gcC | gcA | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | AY.4.5 | 0.000107 |
S | 344 | A344del1 | Gcc | -cc | 1 | 1 | AY.4.5 | 0.000107 |
S | 344 | A344V | gCc | gTc | 1 | 1 | AY.4.5 | 0.000107 |
S | 344 | A344T | Gcc | Acc | 1 | 1 | AY.42 | 0.00004 |
S | 344 | A344del | GCC | --- | 1 | 1 | AY.43 | 0.000004 |
S | 344 | A344G | gCc | gGc | 1 | 1 | AY.44 | 0.000006 |
S | 344 | A344V | gCc | gTc | 1 | 1 | AY.44 | 0.000006 |
S | 344 | A344A | gcC | gcT | 1 | 1 | AY.45 | 0.000122 |
S | 344 | A344A | gcC | gcT | 1 | 1 | AY.46.5 | 0.000198 |
S | 344 | A344P | Gcc | Ccc | 1 | 1 | AY.48 | 0.000465 |
S | 344 | A344V | gCc | gTc | 1 | 1 | AY.5 | 0.000021 |
S | 344 | A344del | GCC | --- | 1 | 1 | AY.5 | 0.000021 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | AY.57 | 0.000656 |
S | 344 | A344A | gcC | gcT | 1 | 1 | AY.6 | 0.000041 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | AY.61 | 0.000105 |
S | 344 | A344A | gcC | gcT | 1 | 1 | AY.62 | 0.000436 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | AY.63 | 0.000387 |
S | 344 | A344V | gCc | gTc | 1 | 1 | AY.7 | 0.000196 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | AY.7 | 0.000196 |
S | 344 | A344T | Gcc | Acc | 1 | 1 | AY.7.1 | 0.000113 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | AY.70 | 0.000209 |
S | 344 | A344G | gCc | gGc | 1 | 1 | AY.72 | 0.001361 |
S | 344 | A344T | Gcc | Acc | 1 | 1 | AY.74 | 0.000116 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | AY.74 | 0.000116 |
S | 344 | A344T | Gcc | Acc | 1 | 1 | AY.75 | 0.000056 |
S | 344 | A344V | gCc | gTc | 1 | 1 | AY.75 | 0.000056 |
S | 344 | A344T | Gcc | Acc | 1 | 1 | AY.82 | 0.001357 |
S | 344 | A344V | gCc | gTc | 1 | 1 | AY.84 | 0.000437 |
S | 344 | A344V | gCc | gTc | 1 | 1 | AY.9 | 0.000068 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | AY.9 | 0.000068 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | AY.9.2.1 | 0.001976 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | AY.98.1 | 0.000048 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | AY.99 | 0.001049 |
S | 344 | A344V | gCc | gTc | 1 | 1 | AY.99.2 | 0.000092 |
S | 344 | A344A | gcC | gcG | 1 | 1 | AY.99.2 | 0.000092 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | B | 0.000128 |
S | 344 | A344V | gCc | gTc | 1 | 1 | B.1.1 | 0.000018 |
S | 344 | A344del | GCC | --- | 1 | 1 | B.1.1 | 0.000018 |
S | 344 | A344A | gcC | gcT | 1 | 1 | B.1.1.121 | 0.002427 |
S | 344 | A344A | gcC | gcT | 1 | 1 | B.1.1.153 | 0.001095 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | B.1.1.191 | 0.004762 |
S | 344 | A344V | gCc | gTc | 1 | 1 | B.1.1.243 | 0.004082 |
S | 344 | A344A | gcC | gcT | 1 | 1 | B.1.1.279 | 0.001121 |
S | 344 | A344A | gcC | gcA | 1 | 1 | B.1.1.311 | 0.000358 |
S | 344 | A344A | gcC | gcT | 1 | 1 | B.1.1.317 | 0.000412 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | B.1.1.318 | 0.000302 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | B.1.1.33 | 0.000421 |
S | 344 | A344A | gcC | gcG | 1 | 1 | B.1.1.344 | 0.010753 |
S | 344 | A344A | gcC | gcT | 1 | 1 | B.1.1.348 | 0.000796 |
S | 344 | A344A | gcC | gcT | 1 | 1 | B.1.1.369 | 0.000446 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | B.1.1.374 | 0.002375 |
S | 344 | A344P | Gcc | Ccc | 1 | 1 | B.1.1.409 | 0.002833 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | B.1.1.41 | 0.006329 |
S | 344 | A344A | gcC | gcA | 1 | 1 | B.1.1.437 | 0.010417 |
S | 344 | A344A | gcC | gcT | 1 | 1 | B.1.1.519 | 0.00004 |
S | 344 | A344V | gCc | gTc | 1 | 1 | B.1.1.519 | 0.00004 |
S | 344 | A344T | Gcc | Acc | 1 | 1 | B.1.1.70 | 0.000341 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | B.1.1.83 | 0.00271 |
S | 344 | A344P | Gcc | Ccc | 1 | 1 | B.1.146 | 0.004237 |
S | 344 | A344A | gcC | gcT | 1 | 1 | B.1.149 | 0.003425 |
S | 344 | A344A | gcC | gcT | 1 | 1 | B.1.157 | 0.002985 |
S | 344 | A344T | Gcc | Acc | 1 | 1 | B.1.160 | 0.000031 |
S | 344 | A344V | gCc | gTc | 1 | 1 | B.1.160 | 0.000031 |
S | 344 | A344T | Gcc | Acc | 1 | 1 | B.1.160.14 | 0.002119 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | B.1.160.30 | 0.002976 |
S | 344 | A344A | gcC | gcT | 1 | 1 | B.1.165 | 0.011905 |
S | 344 | A344P | Gcc | Ccc | 1 | 1 | B.1.177 | 0.000013 |
S | 344 | A344del | GCC | --- | 1 | 1 | B.1.177 | 0.000013 |
S | 344 | A344V | gCc | gTc | 1 | 1 | B.1.177.12 | 0.000152 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | B.1.177.15 | 0.000631 |
S | 344 | A344del | GCC | --- | 1 | 1 | B.1.177.18 | 0.00116 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | B.1.177.32 | 0.00135 |
S | 344 | A344V | gCc | gTc | 1 | 1 | B.1.177.43 | 0.001477 |
S | 344 | A344A | gcC | gcT | 1 | 1 | B.1.177.57 | 0.000281 |
S | 344 | A344F | GCC | TTT | 1 | 1 | B.1.177.65 | 0.000665 |
S | 344 | A344del | GCC | --- | 1 | 1 | B.1.177.7 | 0.000165 |
S | 344 | A344A | gcC | gcT | 1 | 1 | B.1.177.70 | 0.005917 |
S | 344 | A344A | gcC | gcT | 1 | 1 | B.1.177.81 | 0.000189 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | B.1.177.86 | 0.000183 |
S | 344 | A344A | gcC | gcT | 1 | 1 | B.1.177.88 | 0.012346 |
S | 344 | A344T | Gcc | Acc | 1 | 1 | B.1.184 | 0.058824 |
S | 344 | A344G | gCc | gGc | 1 | 1 | B.1.2 | 0.000009 |
S | 344 | A344D | gCc | gAc | 1 | 1 | B.1.2 | 0.000009 |
S | 344 | A344A | gcC | gcT | 1 | 1 | B.1.221.4 | 0.004167 |
S | 344 | A344D | gCc | gAc | 1 | 1 | B.1.240 | 0.000216 |
S | 344 | A344V | gCc | gTc | 1 | 1 | B.1.240 | 0.000216 |
S | 344 | A344A | gcC | gcT | 1 | 1 | B.1.258 | 0.000067 |
S | 344 | A344I | GCc | ATc | 1 | 1 | B.1.258 | 0.000067 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | B.1.258 | 0.000067 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | B.1.258.11 | 0.000396 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | B.1.258.17 | 0.000104 |
S | 344 | A344T | Gcc | Acc | 1 | 1 | B.1.351 | 0.00003 |
S | 344 | A344A | gcC | gcT | 1 | 1 | B.1.351.2 | 0.000303 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | B.1.351.3 | 0.000876 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | B.1.36 | 0.000146 |
S | 344 | A344A | gcC | gcA | 1 | 1 | B.1.36.29 | 0.000517 |
S | 344 | A344A | gcC | gcA | 1 | 1 | B.1.367 | 0.000792 |
S | 344 | A344D | gCc | gAc | 1 | 1 | B.1.369 | 0.000285 |
S | 344 | A344del | GCC | --- | 1 | 1 | B.1.409 | 0.000781 |
S | 344 | A344A | gcC | gcT | 1 | 1 | B.1.429 | 0.000024 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | B.1.438.1 | 0.000107 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | B.1.497 | 0.000315 |
S | 344 | A344P | Gcc | Ccc | 1 | 1 | B.1.504 | 0.03125 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | B.1.517 | 0.000427 |
S | 344 | A344A | gcC | gcT | 1 | 1 | B.1.523 | 0.002451 |
S | 344 | A344T | Gcc | Acc | 1 | 1 | B.1.526 | 0.000024 |
S | 344 | A344T | Gcc | Acc | 1 | 1 | B.1.564 | 0.000426 |
S | 344 | A344V | gCc | gTc | 1 | 1 | B.1.576 | 0.000907 |
S | 344 | A344A | gcC | gcT | 1 | 1 | B.1.577 | 0.000687 |
S | 344 | A344del1 | Gcc | -cc | 1 | 1 | B.1.580 | 0.004065 |
S | 344 | A344A | gcC | gcT | 1 | 1 | B.1.587 | 0.001898 |
S | 344 | A344F | GCc | TTc | 1 | 1 | B.1.617.1 | 0.000129 |
S | 344 | A344del2 | gCC | g-- | 1 | 1 | B.1.617.2 | 0.000004 |
S | 344 | A344del1 | Gcc | -cc | 1 | 1 | B.1.617.2 | 0.000004 |
S | 344 | A344D | gCc | gAc | 1 | 1 | B.1.617.2 | 0.000004 |
S | 344 | A344del | GCC | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 344 | A344A | gcC | gcT | 1 | 1 | B.1.630 | 0.005236 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | B.1.636 | 0.006711 |
S | 344 | A344V | gCc | gTc | 1 | 1 | B.1.637 | 0.000073 |
S | 344 | A344V | gCc | gTc | 1 | 1 | B.1.9.4 | 0.006135 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | B.29 | 0.003509 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | B.4 | 0.002208 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | B.41 | 0.008 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | B.6.6 | 0.000889 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | C.18 | 0.002591 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | C.36.3 | 0.000567 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | C.37 | 0.000116 |
S | 344 | A344D | gCc | gAc | 1 | 1 | C.37 | 0.000116 |
S | 344 | A344V | gCc | gTc | 1 | 1 | D.2 | 0.000075 |
S | 344 | A344P | Gcc | Ccc | 1 | 1 | D.2 | 0.000075 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | N.1 | 0.016949 |
S | 344 | A344T | Gcc | Acc | 1 | 1 | P.1 | 0.000016 |
S | 344 | A344V | gCc | gTc | 1 | 1 | P.1 | 0.000016 |
S | 344 | A344D | gCc | gAc | 1 | 1 | P.1 | 0.000016 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | P.1.15 | 0.000232 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | P.1.17 | 0.000162 |
S | 344 | A344T | Gcc | Acc | 1 | 1 | P.1.17 | 0.000162 |
S | 344 | A344A | gcC | gcT | 1 | 1 | P.1.2 | 0.001156 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | Q.1 | 0.000126 |
S | 344 | A344S | Gcc | Tcc | 1 | 1 | Q.8 | 0.000165 |
S | 344 | A344del | GCC | --- | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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