CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 344

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S344A344AsyngcCgcA17228880.51567922592-22594
S344A344AsyngcCgcT17227800.45296222592-22594
S344A344AsyngcCgcG1722540.031358922592-22594
S344A344SnonsynGccTcc158515840.99936922592-22594
S344A344SnonsynGcCTcT158510.00063091522592-22594
S344A344TnonsynGccAcc2252230.99111122592-22594
S344A344TnonsynGcCAcA22520.0088888922592-22594
S344A344VnonsyngCcgTc1241210.97580622592-22594
S344A344VnonsyngCCgTA12420.01612922592-22594
S344A344VnonsyngCCgTG12410.0080645222592-22594
S344A344deldelGCC---2424122592-22594
S344A344DnonsyngCcgAc2222122592-22594
S344A344PnonsynGccCcc1111122592-22594
S344A344GnonsyngCcgGc99122592-22594
S344A344FnonsynGCCTTT950.55555622592-22594
S344A344FnonsynGCcTTc940.44444422592-22594
S344A344del1delGcc-cc530.622592-22594
S344A344InonsynGCcATc530.622592-22594
S344A344InonsynGCCATA520.422592-22594
S344A344del1delGCCAT-520.422592-22594
S344A344RnonsynGCcCGc11122592-22594
S344A344del2delgCCg--11122592-22594

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S344A344AgcCgcA8881722All0.00017
S344A344AgcCgcT7801722All0.000149
S344A344AgcCgcG541722All0.00001
S344A344SGccTcc15841585All0.000303
S344A344SGcCTcT11585All0
S344A344AgcCgcA8211021B.1.20.007229
S344A344AgcCgcT1641021B.1.20.001444
S344A344AgcCgcG361021B.1.20.000317
S344A344SGccTcc496496AY.430.002198
S344A344TGccAcc223225All0.000043
S344A344TGcCAcA2225All0
S344A344AgcCgcT134142B.1.1.70.00012
S344A344AgcCgcA5142B.1.1.70.000004
S344A344AgcCgcG3142B.1.1.70.000003
S344A344AgcCgcT130132AY.40.000202
S344A344AgcCgcA2132AY.40.000003
S344A344VgCcgTc121124All0.000023
S344A344VgCCgTA2124All0
S344A344VgCCgTG1124All0
S344A344SGccTcc111112B.1.1.70.000099
S344A344SGcCTcT1112B.1.1.70.000001
S344A344SGccTcc9494AY.40.000146
S344A344SGccTcc6060B.1.4290.001412
S344A344SGccTcc5959B.1.617.20.000222
S344A344TGccAcc5555AY.1200.002045
S344A344SGccTcc5454P.10.000851
S344A344SGccTcc5353AY.250.000319
S344A344AgcCgcT4652AY.1030.000286
S344A344AgcCgcA652AY.1030.000037
S344A344SGccTcc5151N.90.303571
S344A344SGccTcc4848AY.1030.000298
S344A344AgcCgcT4245B.1.617.20.000158
S344A344AgcCgcA345B.1.617.20.000011
S344A344SGccTcc3636AY.4.20.000781
S344A344SGccTcc3333AY.440.000201
S344A344VgCcgTc3233B.1.1.70.000029
S344A344VgCCgTG133B.1.1.70.000001
S344A344SGccTcc3131B.1.5940.96875
S344A344SGccTcc2929B.1.10.000526
S344A344SGccTcc2727AY.270.001747
S344A344AgcCgcT2727AY.30.000269
S344A344SGccTcc2626B.1.20.000229
S344A344delGCC---2424All0.000005
S344A344AgcCgcT2223AY.430.000097
S344A344AgcCgcA123AY.430.000004
S344A344DgCcgAc2222All0.000004
S344A344AgcCgcT2222B.1.1770.00029
S344A344TGccAcc2121AY.260.000595
S344A344AgcCgcA1321AY.440.000079
S344A344AgcCgcT821AY.440.000049
S344A344AgcCgcT1520B.10.000137
S344A344AgcCgcA520B.10.000046
S344A344SGccTcc2020B.1.177.690.029674
S344A344TGccAcc1818B.1.1.70.000016
S344A344AgcCgcT1818B.1.3620.027735
S344A344SGccTcc1717AY.1020.000451
S344A344SGccTcc1717AY.60.000699
S344A344SGccTcc1616AY.260.000453
S344A344AgcCgcT1415AY.250.000084
S344A344AgcCgcA115AY.250.000006
S344A344SGccTcc1515AY.290.000237
S344A344VgCcgTc1515AY.40.000023
S344A344TGccAcc1515AY.40.000023
S344A344SGccTcc1515B.1.564.10.023659
S344A344AgcCgcT1113B.1.5250.001245
S344A344AgcCgcG213B.1.5250.000226
S344A344TGccAcc1212AY.670.005571
S344A344SGccTcc1212B.1.5960.001046
S344A344PGccCcc1111All0.000002
S344A344TGccAcc1111AY.1030.000068
S344A344SGccTcc1010AY.1200.000372
S344A344SGccTcc1010AY.99.20.000922
S344A344TGccAcc1010B.1.20.000088
S344A344TGccAcc1010B.1.617.20.000038
S344A344GgCcgGc99All0.000002
S344A344FGCCTTT59All0.000001
S344A344FGCcTTc49All0.000001
S344A344SGccTcc99AY.330.000601
S344A344AgcCgcT88AY.470.000249
S344A344SGccTcc88AY.75.10.001442
S344A344SGccTcc88AY.980.000632
S344A344AgcCgcA78B.1.5960.00061
S344A344AgcCgcT18B.1.5960.000087
S344A344VgCcgTc88B.1.617.20.00003
S344A344SGccTcc77AY.1180.000439
S344A344SGccTcc77AY.200.000272
S344A344TGccAcc77AY.250.000042
S344A344SGccTcc77AY.30.00007
S344A344AgcCgcT77AY.330.000467
S344A344AgcCgcT77B.1.1.10.002287
S344A344SGccTcc77B.1.1.5190.000278
S344A344AgcCgcT77P.10.00011
S344A344SGccTcc66AY.1060.002009
S344A344SGccTcc66AY.470.000187
S344A344TGccAcc66AY.75.10.001082
S344A344VgCcgTc66AY.9.20.00022
S344A344SGccTcc66B.10.000055
S344A344SGccTcc66B.1.1.4480.012195
S344A344delGCC---66B.1.1.70.000005
S344A344SGccTcc66B.1.1770.000079
S344A344SGccTcc66B.1.3510.000178
S344A344AgcCgcT66B.1.3750.004918
S344A344AgcCgcT66B.1.6210.000531
S344A344AgcCgcG66Q.30.00087
S344A344IGCcATc35All0.000001
S344A344del1Gcc-cc35All0.000001
S344A344del1GCCAT-25All0
S344A344IGCCATA25All0
S344A344AgcCgcT45AY.1020.000106
S344A344AgcCgcA15AY.1020.000027
S344A344AgcCgcT55AY.1180.000313
S344A344DgCcgAc55AY.40.000008
S344A344SGccTcc55AY.540.000477
S344A344SGccTcc55AY.580.004537
S344A344AgcCgcT55AY.9.20.000184
S344A344VgCcgTc55B.10.000046
S344A344FGCCTTT45B.1.1.70.000004
S344A344FGCcTTc15B.1.1.70.000001
S344A344AgcCgcT55B.1.3510.000149
S344A344AgcCgcA55B.1.5950.001305
S344A344SGccTcc55P.1.140.000239
S344A344TGccAcc240.111111
S344A344VgCcgTc240.111111
S344A344TGcCAcA240.111111
S344A344IGCCATA240.111111
S344A344IGCcATc240.111111
S344A344VgCCgTA240.111111
S344A344SGccTcc44AY.1190.000141
S344A344VgCcgTc44AY.430.000018
S344A344SGccTcc44AY.480.00186
S344A344TGccAcc44AY.50.000083
S344A344TGccAcc44AY.700.000834
S344A344AgcCgcT34AY.980.000237
S344A344AgcCgcG14AY.980.000079
S344A344AgcCgcG44B.1.1.3620.022472
S344A344SGccTcc44B.1.4270.000202
S344A344AgcCgcA24B.1.466.20.000782
S344A344AgcCgcT24B.1.466.20.000782
S344A344TGccAcc44B.1.6370.000292
S344A344SGccTcc44B.1.6370.000292
S344A344AgcCgcT33AP.10.004505
S344A344VgCcgTc33AY.1030.000019
S344A344DgCcgAc33AY.1030.000019
S344A344VgCcgTc33AY.1200.000112
S344A344VgCcgTc33AY.20.001068
S344A344SGccTcc33AY.230.000209
S344A344VgCcgTc33AY.250.000018
S344A344AgcCgcT33AY.260.000085
S344A344SGccTcc33AY.3.10.000256
S344A344SGccTcc33AY.390.000074
S344A344TGccAcc33AY.440.000018
S344A344SGccTcc33AY.450.000365
S344A344SGccTcc33AY.5.40.00083
S344A344AgcCgcA33AY.510.002727
S344A344VgCcgTc33AY.60.000123
S344A344SGccTcc33AY.750.000168
S344A344TGccAcc33AY.80.001818
S344A344GgCcgGc33AY.9.10.000251
S344A344SGccTcc33AY.9.20.00011
S344A344AgcCgcA23B0.000256
S344A344AgcCgcT13B0.000128
S344A344TGccAcc33B.10.000027
S344A344SGccTcc33B.1.1.2840.000322
S344A344AgcCgcA33B.1.177.770.002179
S344A344VgCcgTc33B.1.20.000026
S344A344SGccTcc33B.1.4460.06
S344A344SGccTcc33B.1.5950.000783
S344A344SGccTcc33B.1.80.005917
S344A344AgcCgcT33C.370.000348
S344A344TGccAcc33P.1.140.000143
S344A344del1GCCAT-220.111111
S344A344AgcCgcA220.111111
S344A344SGccTcc22AY.1000.000092
S344A344SGccTcc22AY.1130.000285
S344A344VgCcgTc22AY.120.000632
S344A344SGccTcc22AY.1210.000271
S344A344TGccAcc22AY.200.000078
S344A344AgcCgcT22AY.290.000032
S344A344TGccAcc22AY.30.00002
S344A344TGccAcc22AY.390.000049
S344A344GgCcgGc22AY.40.000003
S344A344SGccTcc22AY.420.00008
S344A344AgcCgcT22AY.420.00008
S344A344DgCcgAc22AY.440.000012
S344A344SGccTcc22AY.460.000208
S344A344SGccTcc22AY.46.60.000144
S344A344AgcCgcT22AY.50.000041
S344A344SGccTcc22AY.50.000041
S344A344AgcCgcT22AY.5.40.000553
S344A344SGccTcc22AY.770.002255
S344A344SGccTcc22AY.810.003984
S344A344AgcCgcT22AY.9.10.000167
S344A344AgcCgcT22AY.930.000546
S344A344SGccTcc22AY.940.000885
S344A344delGCC---22B.10.000018
S344A344PGccCcc22B.10.000018
S344A344DgCcgAc22B.10.000018
S344A344TGccAcc22B.1.10.000036
S344A344AgcCgcT22B.1.10.000036
S344A344SGccTcc22B.1.1.10.000653
S344A344SGccTcc22B.1.1.2160.001781
S344A344DgCcgAc22B.1.1.70.000002
S344A344SGccTcc22B.1.160.270.030303
S344A344delGCC---22B.1.20.000018
S344A344SGccTcc22B.1.36.290.001035
S344A344TGccAcc22B.1.36.80.002
S344A344SGccTcc22B.1.4700.002809
S344A344SGccTcc22B.1.4710.005464
S344A344AgcCgcT22B.1.5260.000047
S344A344SGccTcc22B.1.5260.000047
S344A344SGccTcc22B.1.617.10.000258
S344A344FGCcTTc22B.1.617.20.000008
S344A344delGCC---22B.1.617.20.000008
S344A344AgcCgcT22Q.80.00033
S344A344PGccCcc110.055556
S344A344RGCcCGc110.055556
S344A344GgCcgGc110.055556
S344A344AgcCgcA11A0.000387
S344A344SGccTcc11A.10.000282
S344A344TGccAcc11A.2.50.000499
S344A344SGccTcc11AD.20.000219
S344A344RGCcCGc11All0
S344A344del2gCCg--11All0
S344A344SGccTcc11AY.10.000396
S344A344VgCcgTc11AY.1020.000027
S344A344AgcCgcT11AY.1090.00074
S344A344SGccTcc11AY.1160.000287
S344A344SGccTcc11AY.1170.000085
S344A344TGccAcc11AY.1190.000035
S344A344TGccAcc11AY.120.000316
S344A344VgCcgTc11AY.1210.000135
S344A344TGccAcc11AY.130.000161
S344A344SGccTcc11AY.130.000161
S344A344AgcCgcT11AY.130.000161
S344A344SGccTcc11AY.16.10.00047
S344A344TGccAcc11AY.16.10.00047
S344A344VgCcgTc11AY.230.00007
S344A344VgCcgTc11AY.23.10.000417
S344A344delGCC---11AY.260.000028
S344A344VgCcgTc11AY.270.000065
S344A344DgCcgAc11AY.30.00001
S344A344delGCC---11AY.30.00001
S344A344VgCcgTc11AY.30.00001
S344A344TGccAcc11AY.3.10.000085
S344A344TGccAcc11AY.320.000532
S344A344VgCcgTc11AY.340.000097
S344A344SGccTcc11AY.340.000097
S344A344TGccAcc11AY.340.000097
S344A344SGccTcc11AY.34.10.00051
S344A344AgcCgcT11AY.350.000233
S344A344AgcCgcT11AY.360.000148
S344A344SGccTcc11AY.370.000316
S344A344DgCcgAc11AY.390.000025
S344A344VgCcgTc11AY.390.000025
S344A344AgcCgcT11AY.390.000025
S344A344PGccCcc11AY.390.000025
S344A344SGccTcc11AY.39.10.00004
S344A344SGccTcc11AY.39.1.10.000725
S344A344delGCC---11AY.40.000002
S344A344PGccCcc11AY.40.000002
S344A344VgCcgTc11AY.4.20.000022
S344A344AgcCgcT11AY.4.20.000022
S344A344AgcCgcA11AY.4.2.10.000149
S344A344SGccTcc11AY.4.50.000107
S344A344del1Gcc-cc11AY.4.50.000107
S344A344VgCcgTc11AY.4.50.000107
S344A344TGccAcc11AY.420.00004
S344A344delGCC---11AY.430.000004
S344A344GgCcgGc11AY.440.000006
S344A344VgCcgTc11AY.440.000006
S344A344AgcCgcT11AY.450.000122
S344A344AgcCgcT11AY.46.50.000198
S344A344PGccCcc11AY.480.000465
S344A344VgCcgTc11AY.50.000021
S344A344delGCC---11AY.50.000021
S344A344SGccTcc11AY.570.000656
S344A344AgcCgcT11AY.60.000041
S344A344SGccTcc11AY.610.000105
S344A344AgcCgcT11AY.620.000436
S344A344SGccTcc11AY.630.000387
S344A344VgCcgTc11AY.70.000196
S344A344SGccTcc11AY.70.000196
S344A344TGccAcc11AY.7.10.000113
S344A344SGccTcc11AY.700.000209
S344A344GgCcgGc11AY.720.001361
S344A344TGccAcc11AY.740.000116
S344A344SGccTcc11AY.740.000116
S344A344TGccAcc11AY.750.000056
S344A344VgCcgTc11AY.750.000056
S344A344TGccAcc11AY.820.001357
S344A344VgCcgTc11AY.840.000437
S344A344VgCcgTc11AY.90.000068
S344A344SGccTcc11AY.90.000068
S344A344SGccTcc11AY.9.2.10.001976
S344A344SGccTcc11AY.98.10.000048
S344A344SGccTcc11AY.990.001049
S344A344VgCcgTc11AY.99.20.000092
S344A344AgcCgcG11AY.99.20.000092
S344A344SGccTcc11B0.000128
S344A344VgCcgTc11B.1.10.000018
S344A344delGCC---11B.1.10.000018
S344A344AgcCgcT11B.1.1.1210.002427
S344A344AgcCgcT11B.1.1.1530.001095
S344A344SGccTcc11B.1.1.1910.004762
S344A344VgCcgTc11B.1.1.2430.004082
S344A344AgcCgcT11B.1.1.2790.001121
S344A344AgcCgcA11B.1.1.3110.000358
S344A344AgcCgcT11B.1.1.3170.000412
S344A344SGccTcc11B.1.1.3180.000302
S344A344SGccTcc11B.1.1.330.000421
S344A344AgcCgcG11B.1.1.3440.010753
S344A344AgcCgcT11B.1.1.3480.000796
S344A344AgcCgcT11B.1.1.3690.000446
S344A344SGccTcc11B.1.1.3740.002375
S344A344PGccCcc11B.1.1.4090.002833
S344A344SGccTcc11B.1.1.410.006329
S344A344AgcCgcA11B.1.1.4370.010417
S344A344AgcCgcT11B.1.1.5190.00004
S344A344VgCcgTc11B.1.1.5190.00004
S344A344TGccAcc11B.1.1.700.000341
S344A344SGccTcc11B.1.1.830.00271
S344A344PGccCcc11B.1.1460.004237
S344A344AgcCgcT11B.1.1490.003425
S344A344AgcCgcT11B.1.1570.002985
S344A344TGccAcc11B.1.1600.000031
S344A344VgCcgTc11B.1.1600.000031
S344A344TGccAcc11B.1.160.140.002119
S344A344SGccTcc11B.1.160.300.002976
S344A344AgcCgcT11B.1.1650.011905
S344A344PGccCcc11B.1.1770.000013
S344A344delGCC---11B.1.1770.000013
S344A344VgCcgTc11B.1.177.120.000152
S344A344SGccTcc11B.1.177.150.000631
S344A344delGCC---11B.1.177.180.00116
S344A344SGccTcc11B.1.177.320.00135
S344A344VgCcgTc11B.1.177.430.001477
S344A344AgcCgcT11B.1.177.570.000281
S344A344FGCCTTT11B.1.177.650.000665
S344A344delGCC---11B.1.177.70.000165
S344A344AgcCgcT11B.1.177.700.005917
S344A344AgcCgcT11B.1.177.810.000189
S344A344SGccTcc11B.1.177.860.000183
S344A344AgcCgcT11B.1.177.880.012346
S344A344TGccAcc11B.1.1840.058824
S344A344GgCcgGc11B.1.20.000009
S344A344DgCcgAc11B.1.20.000009
S344A344AgcCgcT11B.1.221.40.004167
S344A344DgCcgAc11B.1.2400.000216
S344A344VgCcgTc11B.1.2400.000216
S344A344AgcCgcT11B.1.2580.000067
S344A344IGCcATc11B.1.2580.000067
S344A344SGccTcc11B.1.2580.000067
S344A344SGccTcc11B.1.258.110.000396
S344A344SGccTcc11B.1.258.170.000104
S344A344TGccAcc11B.1.3510.00003
S344A344AgcCgcT11B.1.351.20.000303
S344A344SGccTcc11B.1.351.30.000876
S344A344SGccTcc11B.1.360.000146
S344A344AgcCgcA11B.1.36.290.000517
S344A344AgcCgcA11B.1.3670.000792
S344A344DgCcgAc11B.1.3690.000285
S344A344delGCC---11B.1.4090.000781
S344A344AgcCgcT11B.1.4290.000024
S344A344SGccTcc11B.1.438.10.000107
S344A344SGccTcc11B.1.4970.000315
S344A344PGccCcc11B.1.5040.03125
S344A344SGccTcc11B.1.5170.000427
S344A344AgcCgcT11B.1.5230.002451
S344A344TGccAcc11B.1.5260.000024
S344A344TGccAcc11B.1.5640.000426
S344A344VgCcgTc11B.1.5760.000907
S344A344AgcCgcT11B.1.5770.000687
S344A344del1Gcc-cc11B.1.5800.004065
S344A344AgcCgcT11B.1.5870.001898
S344A344FGCcTTc11B.1.617.10.000129
S344A344del2gCCg--11B.1.617.20.000004
S344A344del1Gcc-cc11B.1.617.20.000004
S344A344DgCcgAc11B.1.617.20.000004
S344A344delGCC---11B.1.6200.000946
S344A344AgcCgcT11B.1.6300.005236
S344A344SGccTcc11B.1.6360.006711
S344A344VgCcgTc11B.1.6370.000073
S344A344VgCcgTc11B.1.9.40.006135
S344A344SGccTcc11B.290.003509
S344A344SGccTcc11B.40.002208
S344A344SGccTcc11B.410.008
S344A344SGccTcc11B.6.60.000889
S344A344SGccTcc11C.180.002591
S344A344SGccTcc11C.36.30.000567
S344A344SGccTcc11C.370.000116
S344A344DgCcgAc11C.370.000116
S344A344VgCcgTc11D.20.000075
S344A344PGccCcc11D.20.000075
S344A344SGccTcc11N.10.016949
S344A344TGccAcc11P.10.000016
S344A344VgCcgTc11P.10.000016
S344A344DgCcgAc11P.10.000016
S344A344SGccTcc11P.1.150.000232
S344A344SGccTcc11P.1.170.000162
S344A344TGccAcc11P.1.170.000162
S344A344AgcCgcT11P.1.20.001156
S344A344SGccTcc11Q.10.000126
S344A344SGccTcc11Q.80.000165
S344A344delGCC---11Q.80.000165