CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 323 | T323I | nonsyn | aCa | aTa | 4086 | 4084 | 0.999511 | 22529-22531 | |
S | 323 | T323I | nonsyn | aCA | aTC | 4086 | 2 | 0.000489476 | 22529-22531 | |
S | 323 | T323K | nonsyn | aCa | aAa | 528 | 526 | 0.996212 | 22529-22531 | |
S | 323 | T323K | nonsyn | aCA | aAG | 528 | 2 | 0.00378788 | 22529-22531 | |
S | 323 | T323T | syn | acA | acG | 357 | 190 | 0.532213 | 22529-22531 | |
S | 323 | T323T | syn | acA | acT | 357 | 147 | 0.411765 | 22529-22531 | |
S | 323 | T323T | syn | acA | acC | 357 | 20 | 0.0560224 | 22529-22531 | |
S | 323 | T323A | nonsyn | Aca | Gca | 116 | 115 | 0.991379 | 22529-22531 | |
S | 323 | T323A | nonsyn | AcA | GcG | 116 | 1 | 0.00862069 | 22529-22531 | |
S | 323 | T323R | nonsyn | aCa | aGa | 60 | 60 | 1 | 22529-22531 | |
S | 323 | T323del | del | ACA | --- | 29 | 29 | 1 | 22529-22531 | |
S | 323 | T323S | nonsyn | Aca | Tca | 11 | 10 | 0.909091 | 22529-22531 | |
S | 323 | T323S | nonsyn | AcA | TcC | 11 | 1 | 0.0909091 | 22529-22531 | |
S | 323 | T323P | nonsyn | Aca | Cca | 8 | 6 | 0.75 | 22529-22531 | |
S | 323 | T323P | nonsyn | AcA | CcC | 8 | 2 | 0.25 | 22529-22531 | |
S | 323 | T323L | nonsyn | ACa | TTa | 7 | 3 | 0.428571 | 22529-22531 | |
S | 323 | T323L | nonsyn | ACa | CTa | 7 | 2 | 0.285714 | 22529-22531 | |
S | 323 | T323L | nonsyn | ACA | CTC | 7 | 2 | 0.285714 | 22529-22531 | |
S | 323 | T323M | nonsyn | aCA | aTG | 5 | 5 | 1 | 22529-22531 | |
S | 323 | T323E | nonsyn | ACA | GAG | 4 | 2 | 0.5 | 22529-22531 | |
S | 323 | T323E | nonsyn | ACa | GAa | 4 | 2 | 0.5 | 22529-22531 | |
S | 323 | T323N | nonsyn | aCA | aAC | 3 | 3 | 1 | 22529-22531 | |
S | 323 | T323X | nonsyn | ACa | TAa | 1 | 1 | 1 | 22529-22531 | |
S | 323 | T323Y | nonsyn | ACA | TAC | 1 | 1 | 1 | 22529-22531 | |
S | 323 | T323del1 | del | acA | ac- | 1 | 1 | 1 | 22529-22531 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 323 | T323I | aCa | aTa | 4084 | 4086 | All | 0.000781 |
S | 323 | T323I | aCA | aTC | 2 | 4086 | All | 0 |
S | 323 | T323I | aCa | aTa | 699 | 699 | B.1.1.7 | 0.000626 |
S | 323 | T323K | aCa | aAa | 526 | 528 | All | 0.000101 |
S | 323 | T323K | aCA | aAG | 2 | 528 | All | 0 |
S | 323 | T323K | aCa | aAa | 500 | 500 | AY.46.6 | 0.036104 |
S | 323 | T323I | aCa | aTa | 397 | 397 | B.1 | 0.003636 |
S | 323 | T323T | acA | acG | 190 | 357 | All | 0.000036 |
S | 323 | T323T | acA | acT | 147 | 357 | All | 0.000028 |
S | 323 | T323T | acA | acC | 20 | 357 | All | 0.000004 |
S | 323 | T323I | aCa | aTa | 345 | 345 | B.1.617.2 | 0.001299 |
S | 323 | T323I | aCa | aTa | 317 | 317 | AY.4 | 0.000493 |
S | 323 | T323I | aCa | aTa | 223 | 223 | AY.5 | 0.004605 |
S | 323 | T323I | aCa | aTa | 206 | 206 | AY.68 | 0.056392 |
S | 323 | T323I | aCa | aTa | 151 | 151 | P.1 | 0.002379 |
S | 323 | T323I | aCa | aTa | 146 | 146 | AY.43 | 0.000647 |
S | 323 | T323T | acA | acT | 98 | 127 | B.1.1.7 | 0.000088 |
S | 323 | T323T | acA | acG | 29 | 127 | B.1.1.7 | 0.000026 |
S | 323 | T323I | aCa | aTa | 123 | 123 | B.1.177 | 0.00162 |
S | 323 | T323A | Aca | Gca | 115 | 116 | All | 0.000022 |
S | 323 | T323A | AcA | GcG | 1 | 116 | All | 0 |
S | 323 | T323I | aCa | aTa | 108 | 108 | AY.44 | 0.000657 |
S | 323 | T323I | aCa | aTa | 87 | 87 | B.1.637 | 0.006357 |
S | 323 | T323I | aCa | aTa | 84 | 84 | AY.102 | 0.002227 |
S | 323 | T323I | aCa | aTa | 70 | 70 | AY.103 | 0.000435 |
S | 323 | T323I | aCa | aTa | 62 | 62 | B.1.351 | 0.001843 |
S | 323 | T323R | aCa | aGa | 60 | 60 | All | 0.000011 |
S | 323 | T323I | aCa | aTa | 49 | 49 | B.1.526 | 0.001152 |
S | 323 | T323I | aCa | aTa | 43 | 43 | AY.25 | 0.000259 |
S | 323 | T323I | aCa | aTa | 40 | 40 | AY.42 | 0.001609 |
S | 323 | T323I | aCa | aTa | 38 | 38 | B.1.1.353 | 0.791667 |
S | 323 | T323A | Aca | Gca | 38 | 38 | B.1.1.7 | 0.000034 |
S | 323 | T323I | aCa | aTa | 34 | 34 | B.1.2 | 0.000299 |
S | 323 | T323A | Aca | Gca | 30 | 30 | B.1.617.2 | 0.000113 |
S | 323 | T323del | ACA | --- | 29 | 29 | All | 0.000006 |
S | 323 | T323I | aCa | aTa | 29 | 29 | AY.4.2 | 0.000629 |
S | 323 | T323T | acA | acG | 18 | 29 | B.1.617.2 | 0.000068 |
S | 323 | T323T | acA | acT | 8 | 29 | B.1.617.2 | 0.00003 |
S | 323 | T323T | acA | acC | 3 | 29 | B.1.617.2 | 0.000011 |
S | 323 | T323I | aCa | aTa | 27 | 27 | AY.70 | 0.00563 |
S | 323 | T323I | aCa | aTa | 25 | 25 | P.1.10 | 0.006737 |
S | 323 | T323I | aCa | aTa | 24 | 24 | AY.100 | 0.001104 |
S | 323 | T323I | aCa | aTa | 24 | 24 | AY.6 | 0.000987 |
S | 323 | T323T | acA | acT | 22 | 23 | AY.25 | 0.000132 |
S | 323 | T323T | acA | acG | 1 | 23 | AY.25 | 0.000006 |
S | 323 | T323I | aCa | aTa | 23 | 23 | AY.3 | 0.000229 |
S | 323 | T323I | aCa | aTa | 22 | 22 | AY.29 | 0.000347 |
S | 323 | T323T | acA | acG | 20 | 22 | P.1 | 0.000315 |
S | 323 | T323T | acA | acT | 2 | 22 | P.1 | 0.000032 |
S | 323 | T323I | aCa | aTa | 21 | 21 | B.1.160 | 0.000655 |
S | 323 | T323I | aCa | aTa | 20 | 20 | AY.26 | 0.000566 |
S | 323 | T323I | aCa | aTa | 20 | 20 | B.1.177.57 | 0.00562 |
S | 323 | T323I | aCa | aTa | 19 | 19 | AY.120 | 0.000706 |
S | 323 | T323I | aCa | aTa | 18 | 18 | AY.117 | 0.001521 |
S | 323 | T323I | aCa | aTa | 18 | 18 | B.1.1 | 0.000327 |
S | 323 | T323I | aCa | aTa | 17 | 17 | B.1.1.519 | 0.000675 |
S | 323 | T323T | acA | acG | 17 | 17 | B.1.2 | 0.00015 |
S | 323 | T323del | ACA | --- | 15 | 15 | B.1.1.7 | 0.000013 |
S | 323 | T323I | aCa | aTa | 15 | 15 | B.1.177.75 | 0.015609 |
S | 323 | T323T | acA | acG | 9 | 14 | AY.4 | 0.000014 |
S | 323 | T323T | acA | acT | 4 | 14 | AY.4 | 0.000006 |
S | 323 | T323T | acA | acC | 1 | 14 | AY.4 | 0.000002 |
S | 323 | T323T | acA | acG | 14 | 14 | AY.44 | 0.000085 |
S | 323 | T323T | acA | acG | 14 | 14 | B.1.177 | 0.000184 |
S | 323 | T323I | aCa | aTa | 14 | 14 | B.1.258.17 | 0.001456 |
S | 323 | T323I | aCa | aTa | 13 | 13 | B.1.1.284 | 0.001396 |
S | 323 | T323I | aCa | aTa | 13 | 13 | P.1.7 | 0.004151 |
S | 323 | T323I | aCa | aTa | 12 | 12 | AY.47 | 0.000373 |
S | 323 | T323R | aCa | aGa | 12 | 12 | B.1.1.7 | 0.000011 |
S | 323 | T323I | aCa | aTa | 12 | 12 | B.1.222 | 0.020305 |
S | 323 | T323I | aCa | aTa | 12 | 12 | C.37 | 0.001393 |
S | 323 | T323I | aCa | aTa | 12 | 12 | P.1.15 | 0.002788 |
S | 323 | T323S | Aca | Tca | 10 | 11 | All | 0.000002 |
S | 323 | T323S | AcA | TcC | 1 | 11 | All | 0 |
S | 323 | T323I | aCa | aTa | 11 | 11 | AY.23 | 0.000767 |
S | 323 | T323A | Aca | Gca | 11 | 11 | B.1.1 | 0.0002 |
S | 323 | T323T | acA | acG | 10 | 11 | B.1.1 | 0.000181 |
S | 323 | T323T | acA | acC | 1 | 11 | B.1.1 | 0.000018 |
S | 323 | T323I | aCa | aTa | 11 | 11 | B.1.1.303 | 0.030387 |
S | 323 | T323R | aCa | aGa | 11 | 11 | B.1.617.2 | 0.000041 |
S | 323 | T323I | aCa | aTa | 10 | 10 | AY.20 | 0.000389 |
S | 323 | T323I | aCa | aTa | 10 | 10 | AY.39 | 0.000247 |
S | 323 | T323I | aCa | aTa | 10 | 10 | B.1.429 | 0.000235 |
S | 323 | T323I | aCa | aTa | 10 | 10 | P.1.14 | 0.000478 |
S | 323 | T323I | aCa | aTa | 9 | 9 | AY.45 | 0.001095 |
S | 323 | T323I | aCa | aTa | 9 | 9 | AY.46.4 | 0.001481 |
S | 323 | T323I | aCa | aTa | 9 | 9 | AY.59 | 0.004767 |
S | 323 | T323I | aCa | aTa | 9 | 9 | B.1.177.21 | 0.000688 |
S | 323 | T323P | Aca | Cca | 6 | 8 | All | 0.000001 |
S | 323 | T323P | AcA | CcC | 2 | 8 | All | 0 |
S | 323 | T323T | acA | acG | 6 | 8 | AY.3 | 0.00006 |
S | 323 | T323T | acA | acT | 2 | 8 | AY.3 | 0.00002 |
S | 323 | T323I | aCa | aTa | 8 | 8 | B.1.258 | 0.000532 |
S | 323 | T323L | ACa | TTa | 3 | 7 | All | 0.000001 |
S | 323 | T323L | ACa | CTa | 2 | 7 | All | 0 |
S | 323 | T323L | ACA | CTC | 2 | 7 | All | 0 |
S | 323 | T323I | aCa | aTa | 7 | 7 | AY.34 | 0.000679 |
S | 323 | T323I | aCa | aTa | 7 | 7 | AY.91.1 | 0.028455 |
S | 323 | T323I | aCa | aTa | 7 | 7 | B.1.1.372 | 0.004821 |
S | 323 | T323I | aCa | aTa | 7 | 7 | B.1.177.81 | 0.001325 |
S | 323 | T323I | aCa | aTa | 7 | 7 | P.1.1 | 0.002224 |
S | 323 | T323I | aCa | aTa | 6 | 6 | AY.118 | 0.000376 |
S | 323 | T323K | aCa | aAa | 6 | 6 | AY.4 | 0.000009 |
S | 323 | T323T | acA | acC | 6 | 6 | B.1.1.322 | 0.052632 |
S | 323 | T323I | aCa | aTa | 6 | 6 | B.1.221 | 0.000426 |
S | 323 | T323I | aCa | aTa | 6 | 6 | B.1.243 | 0.000418 |
S | 323 | T323I | aCa | aTa | 6 | 6 | P.1.16 | 0.002245 |
S | 323 | T323T | acA | acC | 4 | 5 | 0.222222 | |
S | 323 | T323K | aCa | aAa | 4 | 5 | 0.222222 | |
S | 323 | T323K | aCA | aAG | 1 | 5 | 0.055556 | |
S | 323 | T323T | acA | acG | 1 | 5 | 0.055556 | |
S | 323 | T323M | aCA | aTG | 5 | 5 | All | 0.000001 |
S | 323 | T323T | acA | acG | 5 | 5 | AY.24 | 0.002155 |
S | 323 | T323I | aCa | aTa | 5 | 5 | AY.39.1 | 0.000198 |
S | 323 | T323R | aCa | aGa | 5 | 5 | AY.4 | 0.000008 |
S | 323 | T323A | Aca | Gca | 5 | 5 | AY.4 | 0.000008 |
S | 323 | T323I | aCa | aTa | 5 | 5 | AY.41 | 0.00147 |
S | 323 | T323R | aCa | aGa | 5 | 5 | AY.43 | 0.000022 |
S | 323 | T323R | aCa | aGa | 5 | 5 | AY.44 | 0.00003 |
S | 323 | T323I | aCa | aTa | 5 | 5 | AY.74 | 0.000578 |
S | 323 | T323I | aCa | aTa | 5 | 5 | AY.9.2 | 0.000184 |
S | 323 | T323I | aCa | aTa | 5 | 5 | B.1.1.420 | 0.00503 |
S | 323 | T323T | acA | acG | 5 | 5 | B.1.177.4 | 0.001055 |
S | 323 | T323I | aCa | aTa | 5 | 5 | B.1.177.44 | 0.002595 |
S | 323 | T323T | acA | acG | 5 | 5 | B.1.596 | 0.000436 |
S | 323 | T323I | aCa | aTa | 5 | 5 | R.1 | 0.00045 |
S | 323 | T323I | aCa | aTa | 5 | 5 | W.4 | 0.006757 |
S | 323 | T323L | ACA | CTC | 2 | 4 | 0.111111 | |
S | 323 | T323I | aCA | aTC | 2 | 4 | 0.111111 | |
S | 323 | T323I | aCa | aTa | 2 | 4 | 0.111111 | |
S | 323 | T323P | Aca | Cca | 2 | 4 | 0.111111 | |
S | 323 | T323L | ACa | CTa | 2 | 4 | 0.111111 | |
S | 323 | T323P | AcA | CcC | 2 | 4 | 0.111111 | |
S | 323 | T323E | ACa | GAa | 2 | 4 | All | 0 |
S | 323 | T323E | ACA | GAG | 2 | 4 | All | 0 |
S | 323 | T323I | aCa | aTa | 4 | 4 | AY.116 | 0.001147 |
S | 323 | T323I | aCa | aTa | 4 | 4 | AY.119 | 0.000141 |
S | 323 | T323I | aCa | aTa | 4 | 4 | AY.13 | 0.000644 |
S | 323 | T323I | aCa | aTa | 4 | 4 | AY.27 | 0.000259 |
S | 323 | T323I | aCa | aTa | 4 | 4 | AY.36 | 0.000593 |
S | 323 | T323I | aCa | aTa | 4 | 4 | AY.46 | 0.000416 |
S | 323 | T323I | aCa | aTa | 4 | 4 | AY.61 | 0.000419 |
S | 323 | T323I | aCa | aTa | 4 | 4 | AY.78 | 0.006163 |
S | 323 | T323I | aCa | aTa | 4 | 4 | AY.98.1 | 0.000194 |
S | 323 | T323A | Aca | Gca | 4 | 4 | B.1 | 0.000037 |
S | 323 | T323T | acA | acG | 4 | 4 | B.1 | 0.000037 |
S | 323 | T323I | aCa | aTa | 4 | 4 | B.1.1.161 | 0.014134 |
S | 323 | T323I | aCa | aTa | 4 | 4 | B.1.1.39 | 0.002039 |
S | 323 | T323A | Aca | Gca | 4 | 4 | B.1.1.519 | 0.000159 |
S | 323 | T323I | aCa | aTa | 4 | 4 | B.1.258.4 | 0.013793 |
S | 323 | T323I | aCa | aTa | 4 | 4 | B.1.596 | 0.000349 |
S | 323 | T323K | aCa | aAa | 3 | 4 | B.1.617.2 | 0.000011 |
S | 323 | T323K | aCA | aAG | 1 | 4 | B.1.617.2 | 0.000004 |
S | 323 | T323I | aCa | aTa | 4 | 4 | D.2 | 0.0003 |
S | 323 | T323T | acA | acG | 4 | 4 | P.1.12 | 0.001936 |
S | 323 | T323N | aCA | aAC | 3 | 3 | All | 0.000001 |
S | 323 | T323I | aCa | aTa | 3 | 3 | AY.110 | 0.000338 |
S | 323 | T323I | aCa | aTa | 3 | 3 | AY.116.1 | 0.000934 |
S | 323 | T323I | aCa | aTa | 3 | 3 | AY.121 | 0.000406 |
S | 323 | T323I | aCa | aTa | 3 | 3 | AY.14 | 0.000264 |
S | 323 | T323I | aCa | aTa | 3 | 3 | AY.21 | 0.005693 |
S | 323 | T323I | aCa | aTa | 3 | 3 | AY.3.1 | 0.000256 |
S | 323 | T323T | acA | acG | 2 | 3 | AY.4.2 | 0.000043 |
S | 323 | T323T | acA | acT | 1 | 3 | AY.4.2 | 0.000022 |
S | 323 | T323T | acA | acG | 3 | 3 | AY.43 | 0.000013 |
S | 323 | T323I | aCa | aTa | 3 | 3 | AY.5.2 | 0.007389 |
S | 323 | T323I | aCa | aTa | 3 | 3 | AY.53 | 0.000863 |
S | 323 | T323A | Aca | Gca | 3 | 3 | AY.72 | 0.004082 |
S | 323 | T323I | aCa | aTa | 3 | 3 | AY.75 | 0.000168 |
S | 323 | T323I | aCa | aTa | 3 | 3 | AY.9 | 0.000203 |
S | 323 | T323I | aCa | aTa | 3 | 3 | AY.94 | 0.001328 |
S | 323 | T323I | aCa | aTa | 3 | 3 | AY.95 | 0.002283 |
S | 323 | T323R | aCa | aGa | 3 | 3 | AY.98 | 0.000237 |
S | 323 | T323I | aCa | aTa | 3 | 3 | B.1.1.135 | 0.014085 |
S | 323 | T323I | aCa | aTa | 3 | 3 | B.1.1.311 | 0.001074 |
S | 323 | T323I | aCa | aTa | 3 | 3 | B.1.177.42 | 0.002683 |
S | 323 | T323A | Aca | Gca | 3 | 3 | B.1.177.69 | 0.004451 |
S | 323 | T323R | aCa | aGa | 3 | 3 | B.1.177.87 | 0.002183 |
S | 323 | T323I | aCa | aTa | 3 | 3 | B.1.247 | 0.044776 |
S | 323 | T323I | aCa | aTa | 3 | 3 | B.1.497 | 0.000944 |
S | 323 | T323A | Aca | Gca | 3 | 3 | C.37 | 0.000348 |
S | 323 | T323I | aCa | aTa | 3 | 3 | Q.1 | 0.000379 |
S | 323 | T323I | aCa | aTa | 3 | 3 | Q.8 | 0.000495 |
S | 323 | T323N | aCA | aAC | 2 | 2 | 0.111111 | |
S | 323 | T323S | AcA | TcC | 1 | 2 | 0.055556 | |
S | 323 | T323A | AcA | GcG | 1 | 2 | 0.055556 | |
S | 323 | T323E | ACa | GAa | 1 | 2 | 0.055556 | |
S | 323 | T323S | Aca | Tca | 1 | 2 | 0.055556 | |
S | 323 | T323A | Aca | Gca | 1 | 2 | 0.055556 | |
S | 323 | T323E | ACA | GAG | 1 | 2 | 0.055556 | |
S | 323 | T323I | aCa | aTa | 2 | 2 | AE.8 | 0.000978 |
S | 323 | T323I | aCa | aTa | 2 | 2 | AY.10 | 0.00106 |
S | 323 | T323A | Aca | Gca | 2 | 2 | AY.103 | 0.000012 |
S | 323 | T323I | aCa | aTa | 2 | 2 | AY.106 | 0.00067 |
S | 323 | T323I | aCa | aTa | 2 | 2 | AY.111 | 0.000366 |
S | 323 | T323T | acA | acG | 2 | 2 | AY.23 | 0.000139 |
S | 323 | T323S | Aca | Tca | 2 | 2 | AY.25 | 0.000012 |
S | 323 | T323R | aCa | aGa | 2 | 2 | AY.25 | 0.000012 |
S | 323 | T323I | aCa | aTa | 2 | 2 | AY.29.1 | 0.000441 |
S | 323 | T323T | acA | acG | 2 | 2 | AY.3.1 | 0.000171 |
S | 323 | T323I | aCa | aTa | 2 | 2 | AY.33 | 0.000134 |
S | 323 | T323T | acA | acG | 2 | 2 | AY.39 | 0.000049 |
S | 323 | T323K | aCa | aAa | 2 | 2 | AY.43 | 0.000009 |
S | 323 | T323T | acA | acG | 2 | 2 | AY.45 | 0.000243 |
S | 323 | T323I | aCa | aTa | 2 | 2 | AY.46.6 | 0.000144 |
S | 323 | T323I | aCa | aTa | 2 | 2 | AY.5.4 | 0.000553 |
S | 323 | T323I | aCa | aTa | 2 | 2 | AY.69 | 0.000373 |
S | 323 | T323I | aCa | aTa | 2 | 2 | AY.77 | 0.002255 |
S | 323 | T323I | aCa | aTa | 2 | 2 | AY.90 | 0.001369 |
S | 323 | T323I | aCa | aTa | 2 | 2 | AZ.2 | 0.001642 |
S | 323 | T323I | aCa | aTa | 2 | 2 | B | 0.000256 |
S | 323 | T323del | ACA | --- | 2 | 2 | B.1 | 0.000018 |
S | 323 | T323K | aCa | aAa | 2 | 2 | B.1.1 | 0.000036 |
S | 323 | T323I | aCa | aTa | 2 | 2 | B.1.1.141 | 0.004024 |
S | 323 | T323S | Aca | Tca | 2 | 2 | B.1.1.214 | 0.000111 |
S | 323 | T323I | aCa | aTa | 2 | 2 | B.1.1.222 | 0.000408 |
S | 323 | T323A | Aca | Gca | 2 | 2 | B.1.1.33 | 0.000842 |
S | 323 | T323I | aCa | aTa | 2 | 2 | B.1.1.434 | 0.000697 |
S | 323 | T323M | aCA | aTG | 2 | 2 | B.1.1.7 | 0.000002 |
S | 323 | T323I | aCa | aTa | 2 | 2 | B.1.111 | 0.00235 |
S | 323 | T323I | aCa | aTa | 2 | 2 | B.1.177.4 | 0.000422 |
S | 323 | T323I | aCa | aTa | 2 | 2 | B.1.177.46 | 0.001837 |
S | 323 | T323K | aCa | aAa | 2 | 2 | B.1.221 | 0.000142 |
S | 323 | T323I | aCa | aTa | 2 | 2 | B.1.250 | 0.028986 |
S | 323 | T323del | ACA | --- | 2 | 2 | B.1.351.2 | 0.000605 |
S | 323 | T323T | acA | acG | 2 | 2 | B.1.36 | 0.000292 |
S | 323 | T323I | aCa | aTa | 2 | 2 | B.1.36.18 | 0.00084 |
S | 323 | T323I | aCa | aTa | 2 | 2 | B.1.36.8 | 0.002 |
S | 323 | T323I | aCa | aTa | 2 | 2 | B.1.389 | 0.002004 |
S | 323 | T323I | aCa | aTa | 2 | 2 | B.1.397 | 0.009709 |
S | 323 | T323T | acA | acC | 1 | 2 | B.1.429 | 0.000024 |
S | 323 | T323T | acA | acG | 1 | 2 | B.1.429 | 0.000024 |
S | 323 | T323I | aCa | aTa | 2 | 2 | B.1.452 | 0.027397 |
S | 323 | T323I | aCa | aTa | 2 | 2 | B.1.525 | 0.000226 |
S | 323 | T323del | ACA | --- | 2 | 2 | B.1.525 | 0.000226 |
S | 323 | T323A | Aca | Gca | 2 | 2 | B.1.526 | 0.000047 |
S | 323 | T323T | acA | acC | 1 | 2 | B.1.526 | 0.000024 |
S | 323 | T323T | acA | acG | 1 | 2 | B.1.526 | 0.000024 |
S | 323 | T323T | acA | acT | 2 | 2 | B.1.575 | 0.000607 |
S | 323 | T323I | aCa | aTa | 2 | 2 | B.1.623 | 0.001073 |
S | 323 | T323I | aCa | aTa | 2 | 2 | D.5 | 0.00995 |
S | 323 | T323I | aCa | aTa | 2 | 2 | P.1.12 | 0.000968 |
S | 323 | T323I | aCa | aTa | 2 | 2 | P.1.17 | 0.000324 |
S | 323 | T323X | ACa | TAa | 1 | 1 | 0.055556 | |
S | 323 | T323Y | ACA | TAC | 1 | 1 | 0.055556 | |
S | 323 | T323del1 | acA | ac- | 1 | 1 | All | 0 |
S | 323 | T323Y | ACA | TAC | 1 | 1 | All | 0 |
S | 323 | T323X | ACa | TAa | 1 | 1 | All | 0 |
S | 323 | T323R | aCa | aGa | 1 | 1 | AY.102 | 0.000027 |
S | 323 | T323T | acA | acT | 1 | 1 | AY.102 | 0.000027 |
S | 323 | T323I | aCa | aTa | 1 | 1 | AY.105 | 0.000643 |
S | 323 | T323R | aCa | aGa | 1 | 1 | AY.113 | 0.000142 |
S | 323 | T323I | aCa | aTa | 1 | 1 | AY.113 | 0.000142 |
S | 323 | T323A | Aca | Gca | 1 | 1 | AY.119 | 0.000035 |
S | 323 | T323T | acA | acG | 1 | 1 | AY.120 | 0.000037 |
S | 323 | T323I | aCa | aTa | 1 | 1 | AY.120.1 | 0.000321 |
S | 323 | T323I | aCa | aTa | 1 | 1 | AY.120.2 | 0.001285 |
S | 323 | T323T | acA | acT | 1 | 1 | AY.16 | 0.00038 |
S | 323 | T323A | Aca | Gca | 1 | 1 | AY.23 | 0.00007 |
S | 323 | T323A | Aca | Gca | 1 | 1 | AY.25 | 0.000006 |
S | 323 | T323M | aCA | aTG | 1 | 1 | AY.25 | 0.000006 |
S | 323 | T323T | acA | acG | 1 | 1 | AY.26 | 0.000028 |
S | 323 | T323del | ACA | --- | 1 | 1 | AY.26 | 0.000028 |
S | 323 | T323A | Aca | Gca | 1 | 1 | AY.3 | 0.00001 |
S | 323 | T323I | aCa | aTa | 1 | 1 | AY.30 | 0.000396 |
S | 323 | T323I | aCa | aTa | 1 | 1 | AY.32 | 0.000532 |
S | 323 | T323I | aCa | aTa | 1 | 1 | AY.35 | 0.000233 |
S | 323 | T323T | acA | acT | 1 | 1 | AY.39.1 | 0.00004 |
S | 323 | T323I | aCa | aTa | 1 | 1 | AY.4.5 | 0.000107 |
S | 323 | T323S | Aca | Tca | 1 | 1 | AY.44 | 0.000006 |
S | 323 | T323I | aCa | aTa | 1 | 1 | AY.46.2 | 0.000635 |
S | 323 | T323I | aCa | aTa | 1 | 1 | AY.46.5 | 0.000198 |
S | 323 | T323R | aCa | aGa | 1 | 1 | AY.5 | 0.000021 |
S | 323 | T323T | acA | acT | 1 | 1 | AY.5 | 0.000021 |
S | 323 | T323T | acA | acG | 1 | 1 | AY.53 | 0.000288 |
S | 323 | T323S | Aca | Tca | 1 | 1 | AY.53 | 0.000288 |
S | 323 | T323I | aCa | aTa | 1 | 1 | AY.54 | 0.000095 |
S | 323 | T323K | aCa | aAa | 1 | 1 | AY.55 | 0.000917 |
S | 323 | T323R | aCa | aGa | 1 | 1 | AY.57 | 0.000656 |
S | 323 | T323I | aCa | aTa | 1 | 1 | AY.58 | 0.000907 |
S | 323 | T323I | aCa | aTa | 1 | 1 | AY.7 | 0.000196 |
S | 323 | T323T | acA | acC | 1 | 1 | AY.7 | 0.000196 |
S | 323 | T323I | aCa | aTa | 1 | 1 | AY.73 | 0.000665 |
S | 323 | T323R | aCa | aGa | 1 | 1 | AY.74 | 0.000116 |
S | 323 | T323I | aCa | aTa | 1 | 1 | AY.75.1 | 0.00018 |
S | 323 | T323T | acA | acC | 1 | 1 | AY.79 | 0.001211 |
S | 323 | T323I | aCa | aTa | 1 | 1 | AY.84 | 0.000437 |
S | 323 | T323K | aCa | aAa | 1 | 1 | AY.9.2 | 0.000037 |
S | 323 | T323R | aCa | aGa | 1 | 1 | AY.92 | 0.000287 |
S | 323 | T323K | aCa | aAa | 1 | 1 | AY.92 | 0.000287 |
S | 323 | T323I | aCa | aTa | 1 | 1 | AY.93 | 0.000273 |
S | 323 | T323A | Aca | Gca | 1 | 1 | AY.98 | 0.000079 |
S | 323 | T323I | aCa | aTa | 1 | 1 | AY.98 | 0.000079 |
S | 323 | T323K | aCa | aAa | 1 | 1 | AY.98 | 0.000079 |
S | 323 | T323I | aCa | aTa | 1 | 1 | AY.99 | 0.001049 |
S | 323 | T323I | aCa | aTa | 1 | 1 | AY.99.2 | 0.000092 |
S | 323 | T323I | aCa | aTa | 1 | 1 | AZ.3 | 0.00152 |
S | 323 | T323P | Aca | Cca | 1 | 1 | B.1 | 0.000009 |
S | 323 | T323K | aCa | aAa | 1 | 1 | B.1 | 0.000009 |
S | 323 | T323S | Aca | Tca | 1 | 1 | B.1 | 0.000009 |
S | 323 | T323R | aCa | aGa | 1 | 1 | B.1 | 0.000009 |
S | 323 | T323del1 | acA | ac- | 1 | 1 | B.1.1 | 0.000018 |
S | 323 | T323N | aCA | aAC | 1 | 1 | B.1.1 | 0.000018 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.1.115 | 0.008929 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.1.157 | 0.000913 |
S | 323 | T323M | aCA | aTG | 1 | 1 | B.1.1.157 | 0.000913 |
S | 323 | T323R | aCa | aGa | 1 | 1 | B.1.1.214 | 0.000055 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.1.214 | 0.000055 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.1.216 | 0.00089 |
S | 323 | T323S | Aca | Tca | 1 | 1 | B.1.1.25 | 0.000569 |
S | 323 | T323T | acA | acG | 1 | 1 | B.1.1.265 | 0.003155 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.1.28 | 0.000311 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.1.298 | 0.000862 |
S | 323 | T323S | Aca | Tca | 1 | 1 | B.1.1.301 | 0.001179 |
S | 323 | T323del | ACA | --- | 1 | 1 | B.1.1.301 | 0.001179 |
S | 323 | T323T | acA | acG | 1 | 1 | B.1.1.302 | 0.002075 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.1.317 | 0.000412 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.1.350 | 0.04 |
S | 323 | T323E | ACA | GAG | 1 | 1 | B.1.1.409 | 0.002833 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.1.411 | 0.014706 |
S | 323 | T323del | ACA | --- | 1 | 1 | B.1.1.46 | 0.004367 |
S | 323 | T323T | acA | acG | 1 | 1 | B.1.1.50 | 0.000679 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.1.528 | 0.004808 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.1.63 | 0.000386 |
S | 323 | T323L | ACa | TTa | 1 | 1 | B.1.1.7 | 0.000001 |
S | 323 | T323K | aCa | aAa | 1 | 1 | B.1.1.7 | 0.000001 |
S | 323 | T323E | ACa | GAa | 1 | 1 | B.1.1.7 | 0.000001 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.1.70 | 0.000341 |
S | 323 | T323T | acA | acG | 1 | 1 | B.1.1.89 | 0.006061 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.128 | 0.000635 |
S | 323 | T323T | acA | acT | 1 | 1 | B.1.160 | 0.000031 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.160.7 | 0.002079 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.177.12 | 0.000152 |
S | 323 | T323L | ACa | TTa | 1 | 1 | B.1.177.16 | 0.000664 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.177.33 | 0.001645 |
S | 323 | T323T | acA | acT | 1 | 1 | B.1.177.45 | 0.000381 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.177.5 | 0.001242 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.177.56 | 0.000668 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.177.60 | 0.000218 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.177.86 | 0.000183 |
S | 323 | T323R | aCa | aGa | 1 | 1 | B.1.2 | 0.000009 |
S | 323 | T323P | Aca | Cca | 1 | 1 | B.1.2 | 0.000009 |
S | 323 | T323del | ACA | --- | 1 | 1 | B.1.221 | 0.000071 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.234 | 0.000132 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.238 | 0.014925 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.240 | 0.000216 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.241 | 0.000812 |
S | 323 | T323T | acA | acG | 1 | 1 | B.1.243 | 0.00007 |
S | 323 | T323del | ACA | --- | 1 | 1 | B.1.258 | 0.000067 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.258.7 | 0.001912 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.298 | 0.002114 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.3 | 0.002618 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.319 | 0.003049 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.320 | 0.001245 |
S | 323 | T323T | acA | acC | 1 | 1 | B.1.351 | 0.00003 |
S | 323 | T323P | Aca | Cca | 1 | 1 | B.1.351 | 0.00003 |
S | 323 | T323R | aCa | aGa | 1 | 1 | B.1.351.2 | 0.000303 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.36.25 | 0.002208 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.36.27 | 0.000763 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.36.29 | 0.000517 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.36.9 | 0.003215 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.362 | 0.001541 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.375 | 0.00082 |
S | 323 | T323L | ACa | TTa | 1 | 1 | B.1.391 | 0.001127 |
S | 323 | T323T | acA | acG | 1 | 1 | B.1.400 | 0.000429 |
S | 323 | T323K | aCa | aAa | 1 | 1 | B.1.416 | 0.001269 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.427 | 0.00005 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.438.1 | 0.000107 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.466.2 | 0.000391 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.499 | 0.00105 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.509 | 0.000866 |
S | 323 | T323R | aCa | aGa | 1 | 1 | B.1.525 | 0.000113 |
S | 323 | T323M | aCA | aTG | 1 | 1 | B.1.525 | 0.000113 |
S | 323 | T323R | aCa | aGa | 1 | 1 | B.1.526 | 0.000024 |
S | 323 | T323T | acA | acT | 1 | 1 | B.1.564 | 0.000426 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.564.1 | 0.001577 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.595 | 0.000261 |
S | 323 | T323R | aCa | aGa | 1 | 1 | B.1.596 | 0.000087 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.617.1 | 0.000129 |
S | 323 | T323P | Aca | Cca | 1 | 1 | B.1.617.1 | 0.000129 |
S | 323 | T323del | ACA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
S | 323 | T323del | ACA | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.621 | 0.000089 |
S | 323 | T323del | ACA | --- | 1 | 1 | B.1.630 | 0.005236 |
S | 323 | T323I | aCa | aTa | 1 | 1 | B.1.634 | 0.003425 |
S | 323 | T323T | acA | acG | 1 | 1 | B.4 | 0.002208 |
S | 323 | T323I | aCa | aTa | 1 | 1 | C.16 | 0.00106 |
S | 323 | T323I | aCa | aTa | 1 | 1 | C.18 | 0.002591 |
S | 323 | T323I | aCa | aTa | 1 | 1 | C.36 | 0.000911 |
S | 323 | T323A | Aca | Gca | 1 | 1 | D.2 | 0.000075 |
S | 323 | T323A | Aca | Gca | 1 | 1 | P.1 | 0.000016 |
S | 323 | T323T | acA | acT | 1 | 1 | P.1.14 | 0.000048 |
S | 323 | T323I | aCa | aTa | 1 | 1 | P.1.9 | 0.004808 |
S | 323 | T323R | aCa | aGa | 1 | 1 | P.2 | 0.000187 |
S | 323 | T323I | aCa | aTa | 1 | 1 | P.7 | 0.004367 |
S | 323 | T323T | acA | acG | 1 | 1 | R.1 | 0.00009 |
S | 323 | T323I | aCa | aTa | 1 | 1 | W.3 | 0.005263 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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