CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 323

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S323T323InonsynaCaaTa408640840.99951122529-22531
S323T323InonsynaCAaTC408620.00048947622529-22531
S323T323KnonsynaCaaAa5285260.99621222529-22531
S323T323KnonsynaCAaAG52820.0037878822529-22531
S323T323TsynacAacG3571900.53221322529-22531
S323T323TsynacAacT3571470.41176522529-22531
S323T323TsynacAacC357200.056022422529-22531
S323T323AnonsynAcaGca1161150.99137922529-22531
S323T323AnonsynAcAGcG11610.0086206922529-22531
S323T323RnonsynaCaaGa6060122529-22531
S323T323deldelACA---2929122529-22531
S323T323SnonsynAcaTca11100.90909122529-22531
S323T323SnonsynAcATcC1110.090909122529-22531
S323T323PnonsynAcaCca860.7522529-22531
S323T323PnonsynAcACcC820.2522529-22531
S323T323LnonsynACaTTa730.42857122529-22531
S323T323LnonsynACaCTa720.28571422529-22531
S323T323LnonsynACACTC720.28571422529-22531
S323T323MnonsynaCAaTG55122529-22531
S323T323EnonsynACAGAG420.522529-22531
S323T323EnonsynACaGAa420.522529-22531
S323T323NnonsynaCAaAC33122529-22531
S323T323XnonsynACaTAa11122529-22531
S323T323YnonsynACATAC11122529-22531
S323T323del1delacAac-11122529-22531

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S323T323IaCaaTa40844086All0.000781
S323T323IaCAaTC24086All0
S323T323IaCaaTa699699B.1.1.70.000626
S323T323KaCaaAa526528All0.000101
S323T323KaCAaAG2528All0
S323T323KaCaaAa500500AY.46.60.036104
S323T323IaCaaTa397397B.10.003636
S323T323TacAacG190357All0.000036
S323T323TacAacT147357All0.000028
S323T323TacAacC20357All0.000004
S323T323IaCaaTa345345B.1.617.20.001299
S323T323IaCaaTa317317AY.40.000493
S323T323IaCaaTa223223AY.50.004605
S323T323IaCaaTa206206AY.680.056392
S323T323IaCaaTa151151P.10.002379
S323T323IaCaaTa146146AY.430.000647
S323T323TacAacT98127B.1.1.70.000088
S323T323TacAacG29127B.1.1.70.000026
S323T323IaCaaTa123123B.1.1770.00162
S323T323AAcaGca115116All0.000022
S323T323AAcAGcG1116All0
S323T323IaCaaTa108108AY.440.000657
S323T323IaCaaTa8787B.1.6370.006357
S323T323IaCaaTa8484AY.1020.002227
S323T323IaCaaTa7070AY.1030.000435
S323T323IaCaaTa6262B.1.3510.001843
S323T323RaCaaGa6060All0.000011
S323T323IaCaaTa4949B.1.5260.001152
S323T323IaCaaTa4343AY.250.000259
S323T323IaCaaTa4040AY.420.001609
S323T323IaCaaTa3838B.1.1.3530.791667
S323T323AAcaGca3838B.1.1.70.000034
S323T323IaCaaTa3434B.1.20.000299
S323T323AAcaGca3030B.1.617.20.000113
S323T323delACA---2929All0.000006
S323T323IaCaaTa2929AY.4.20.000629
S323T323TacAacG1829B.1.617.20.000068
S323T323TacAacT829B.1.617.20.00003
S323T323TacAacC329B.1.617.20.000011
S323T323IaCaaTa2727AY.700.00563
S323T323IaCaaTa2525P.1.100.006737
S323T323IaCaaTa2424AY.1000.001104
S323T323IaCaaTa2424AY.60.000987
S323T323TacAacT2223AY.250.000132
S323T323TacAacG123AY.250.000006
S323T323IaCaaTa2323AY.30.000229
S323T323IaCaaTa2222AY.290.000347
S323T323TacAacG2022P.10.000315
S323T323TacAacT222P.10.000032
S323T323IaCaaTa2121B.1.1600.000655
S323T323IaCaaTa2020AY.260.000566
S323T323IaCaaTa2020B.1.177.570.00562
S323T323IaCaaTa1919AY.1200.000706
S323T323IaCaaTa1818AY.1170.001521
S323T323IaCaaTa1818B.1.10.000327
S323T323IaCaaTa1717B.1.1.5190.000675
S323T323TacAacG1717B.1.20.00015
S323T323delACA---1515B.1.1.70.000013
S323T323IaCaaTa1515B.1.177.750.015609
S323T323TacAacG914AY.40.000014
S323T323TacAacT414AY.40.000006
S323T323TacAacC114AY.40.000002
S323T323TacAacG1414AY.440.000085
S323T323TacAacG1414B.1.1770.000184
S323T323IaCaaTa1414B.1.258.170.001456
S323T323IaCaaTa1313B.1.1.2840.001396
S323T323IaCaaTa1313P.1.70.004151
S323T323IaCaaTa1212AY.470.000373
S323T323RaCaaGa1212B.1.1.70.000011
S323T323IaCaaTa1212B.1.2220.020305
S323T323IaCaaTa1212C.370.001393
S323T323IaCaaTa1212P.1.150.002788
S323T323SAcaTca1011All0.000002
S323T323SAcATcC111All0
S323T323IaCaaTa1111AY.230.000767
S323T323AAcaGca1111B.1.10.0002
S323T323TacAacG1011B.1.10.000181
S323T323TacAacC111B.1.10.000018
S323T323IaCaaTa1111B.1.1.3030.030387
S323T323RaCaaGa1111B.1.617.20.000041
S323T323IaCaaTa1010AY.200.000389
S323T323IaCaaTa1010AY.390.000247
S323T323IaCaaTa1010B.1.4290.000235
S323T323IaCaaTa1010P.1.140.000478
S323T323IaCaaTa99AY.450.001095
S323T323IaCaaTa99AY.46.40.001481
S323T323IaCaaTa99AY.590.004767
S323T323IaCaaTa99B.1.177.210.000688
S323T323PAcaCca68All0.000001
S323T323PAcACcC28All0
S323T323TacAacG68AY.30.00006
S323T323TacAacT28AY.30.00002
S323T323IaCaaTa88B.1.2580.000532
S323T323LACaTTa37All0.000001
S323T323LACaCTa27All0
S323T323LACACTC27All0
S323T323IaCaaTa77AY.340.000679
S323T323IaCaaTa77AY.91.10.028455
S323T323IaCaaTa77B.1.1.3720.004821
S323T323IaCaaTa77B.1.177.810.001325
S323T323IaCaaTa77P.1.10.002224
S323T323IaCaaTa66AY.1180.000376
S323T323KaCaaAa66AY.40.000009
S323T323TacAacC66B.1.1.3220.052632
S323T323IaCaaTa66B.1.2210.000426
S323T323IaCaaTa66B.1.2430.000418
S323T323IaCaaTa66P.1.160.002245
S323T323TacAacC450.222222
S323T323KaCaaAa450.222222
S323T323KaCAaAG150.055556
S323T323TacAacG150.055556
S323T323MaCAaTG55All0.000001
S323T323TacAacG55AY.240.002155
S323T323IaCaaTa55AY.39.10.000198
S323T323RaCaaGa55AY.40.000008
S323T323AAcaGca55AY.40.000008
S323T323IaCaaTa55AY.410.00147
S323T323RaCaaGa55AY.430.000022
S323T323RaCaaGa55AY.440.00003
S323T323IaCaaTa55AY.740.000578
S323T323IaCaaTa55AY.9.20.000184
S323T323IaCaaTa55B.1.1.4200.00503
S323T323TacAacG55B.1.177.40.001055
S323T323IaCaaTa55B.1.177.440.002595
S323T323TacAacG55B.1.5960.000436
S323T323IaCaaTa55R.10.00045
S323T323IaCaaTa55W.40.006757
S323T323LACACTC240.111111
S323T323IaCAaTC240.111111
S323T323IaCaaTa240.111111
S323T323PAcaCca240.111111
S323T323LACaCTa240.111111
S323T323PAcACcC240.111111
S323T323EACaGAa24All0
S323T323EACAGAG24All0
S323T323IaCaaTa44AY.1160.001147
S323T323IaCaaTa44AY.1190.000141
S323T323IaCaaTa44AY.130.000644
S323T323IaCaaTa44AY.270.000259
S323T323IaCaaTa44AY.360.000593
S323T323IaCaaTa44AY.460.000416
S323T323IaCaaTa44AY.610.000419
S323T323IaCaaTa44AY.780.006163
S323T323IaCaaTa44AY.98.10.000194
S323T323AAcaGca44B.10.000037
S323T323TacAacG44B.10.000037
S323T323IaCaaTa44B.1.1.1610.014134
S323T323IaCaaTa44B.1.1.390.002039
S323T323AAcaGca44B.1.1.5190.000159
S323T323IaCaaTa44B.1.258.40.013793
S323T323IaCaaTa44B.1.5960.000349
S323T323KaCaaAa34B.1.617.20.000011
S323T323KaCAaAG14B.1.617.20.000004
S323T323IaCaaTa44D.20.0003
S323T323TacAacG44P.1.120.001936
S323T323NaCAaAC33All0.000001
S323T323IaCaaTa33AY.1100.000338
S323T323IaCaaTa33AY.116.10.000934
S323T323IaCaaTa33AY.1210.000406
S323T323IaCaaTa33AY.140.000264
S323T323IaCaaTa33AY.210.005693
S323T323IaCaaTa33AY.3.10.000256
S323T323TacAacG23AY.4.20.000043
S323T323TacAacT13AY.4.20.000022
S323T323TacAacG33AY.430.000013
S323T323IaCaaTa33AY.5.20.007389
S323T323IaCaaTa33AY.530.000863
S323T323AAcaGca33AY.720.004082
S323T323IaCaaTa33AY.750.000168
S323T323IaCaaTa33AY.90.000203
S323T323IaCaaTa33AY.940.001328
S323T323IaCaaTa33AY.950.002283
S323T323RaCaaGa33AY.980.000237
S323T323IaCaaTa33B.1.1.1350.014085
S323T323IaCaaTa33B.1.1.3110.001074
S323T323IaCaaTa33B.1.177.420.002683
S323T323AAcaGca33B.1.177.690.004451
S323T323RaCaaGa33B.1.177.870.002183
S323T323IaCaaTa33B.1.2470.044776
S323T323IaCaaTa33B.1.4970.000944
S323T323AAcaGca33C.370.000348
S323T323IaCaaTa33Q.10.000379
S323T323IaCaaTa33Q.80.000495
S323T323NaCAaAC220.111111
S323T323SAcATcC120.055556
S323T323AAcAGcG120.055556
S323T323EACaGAa120.055556
S323T323SAcaTca120.055556
S323T323AAcaGca120.055556
S323T323EACAGAG120.055556
S323T323IaCaaTa22AE.80.000978
S323T323IaCaaTa22AY.100.00106
S323T323AAcaGca22AY.1030.000012
S323T323IaCaaTa22AY.1060.00067
S323T323IaCaaTa22AY.1110.000366
S323T323TacAacG22AY.230.000139
S323T323SAcaTca22AY.250.000012
S323T323RaCaaGa22AY.250.000012
S323T323IaCaaTa22AY.29.10.000441
S323T323TacAacG22AY.3.10.000171
S323T323IaCaaTa22AY.330.000134
S323T323TacAacG22AY.390.000049
S323T323KaCaaAa22AY.430.000009
S323T323TacAacG22AY.450.000243
S323T323IaCaaTa22AY.46.60.000144
S323T323IaCaaTa22AY.5.40.000553
S323T323IaCaaTa22AY.690.000373
S323T323IaCaaTa22AY.770.002255
S323T323IaCaaTa22AY.900.001369
S323T323IaCaaTa22AZ.20.001642
S323T323IaCaaTa22B0.000256
S323T323delACA---22B.10.000018
S323T323KaCaaAa22B.1.10.000036
S323T323IaCaaTa22B.1.1.1410.004024
S323T323SAcaTca22B.1.1.2140.000111
S323T323IaCaaTa22B.1.1.2220.000408
S323T323AAcaGca22B.1.1.330.000842
S323T323IaCaaTa22B.1.1.4340.000697
S323T323MaCAaTG22B.1.1.70.000002
S323T323IaCaaTa22B.1.1110.00235
S323T323IaCaaTa22B.1.177.40.000422
S323T323IaCaaTa22B.1.177.460.001837
S323T323KaCaaAa22B.1.2210.000142
S323T323IaCaaTa22B.1.2500.028986
S323T323delACA---22B.1.351.20.000605
S323T323TacAacG22B.1.360.000292
S323T323IaCaaTa22B.1.36.180.00084
S323T323IaCaaTa22B.1.36.80.002
S323T323IaCaaTa22B.1.3890.002004
S323T323IaCaaTa22B.1.3970.009709
S323T323TacAacC12B.1.4290.000024
S323T323TacAacG12B.1.4290.000024
S323T323IaCaaTa22B.1.4520.027397
S323T323IaCaaTa22B.1.5250.000226
S323T323delACA---22B.1.5250.000226
S323T323AAcaGca22B.1.5260.000047
S323T323TacAacC12B.1.5260.000024
S323T323TacAacG12B.1.5260.000024
S323T323TacAacT22B.1.5750.000607
S323T323IaCaaTa22B.1.6230.001073
S323T323IaCaaTa22D.50.00995
S323T323IaCaaTa22P.1.120.000968
S323T323IaCaaTa22P.1.170.000324
S323T323XACaTAa110.055556
S323T323YACATAC110.055556
S323T323del1acAac-11All0
S323T323YACATAC11All0
S323T323XACaTAa11All0
S323T323RaCaaGa11AY.1020.000027
S323T323TacAacT11AY.1020.000027
S323T323IaCaaTa11AY.1050.000643
S323T323RaCaaGa11AY.1130.000142
S323T323IaCaaTa11AY.1130.000142
S323T323AAcaGca11AY.1190.000035
S323T323TacAacG11AY.1200.000037
S323T323IaCaaTa11AY.120.10.000321
S323T323IaCaaTa11AY.120.20.001285
S323T323TacAacT11AY.160.00038
S323T323AAcaGca11AY.230.00007
S323T323AAcaGca11AY.250.000006
S323T323MaCAaTG11AY.250.000006
S323T323TacAacG11AY.260.000028
S323T323delACA---11AY.260.000028
S323T323AAcaGca11AY.30.00001
S323T323IaCaaTa11AY.300.000396
S323T323IaCaaTa11AY.320.000532
S323T323IaCaaTa11AY.350.000233
S323T323TacAacT11AY.39.10.00004
S323T323IaCaaTa11AY.4.50.000107
S323T323SAcaTca11AY.440.000006
S323T323IaCaaTa11AY.46.20.000635
S323T323IaCaaTa11AY.46.50.000198
S323T323RaCaaGa11AY.50.000021
S323T323TacAacT11AY.50.000021
S323T323TacAacG11AY.530.000288
S323T323SAcaTca11AY.530.000288
S323T323IaCaaTa11AY.540.000095
S323T323KaCaaAa11AY.550.000917
S323T323RaCaaGa11AY.570.000656
S323T323IaCaaTa11AY.580.000907
S323T323IaCaaTa11AY.70.000196
S323T323TacAacC11AY.70.000196
S323T323IaCaaTa11AY.730.000665
S323T323RaCaaGa11AY.740.000116
S323T323IaCaaTa11AY.75.10.00018
S323T323TacAacC11AY.790.001211
S323T323IaCaaTa11AY.840.000437
S323T323KaCaaAa11AY.9.20.000037
S323T323RaCaaGa11AY.920.000287
S323T323KaCaaAa11AY.920.000287
S323T323IaCaaTa11AY.930.000273
S323T323AAcaGca11AY.980.000079
S323T323IaCaaTa11AY.980.000079
S323T323KaCaaAa11AY.980.000079
S323T323IaCaaTa11AY.990.001049
S323T323IaCaaTa11AY.99.20.000092
S323T323IaCaaTa11AZ.30.00152
S323T323PAcaCca11B.10.000009
S323T323KaCaaAa11B.10.000009
S323T323SAcaTca11B.10.000009
S323T323RaCaaGa11B.10.000009
S323T323del1acAac-11B.1.10.000018
S323T323NaCAaAC11B.1.10.000018
S323T323IaCaaTa11B.1.1.1150.008929
S323T323IaCaaTa11B.1.1.1570.000913
S323T323MaCAaTG11B.1.1.1570.000913
S323T323RaCaaGa11B.1.1.2140.000055
S323T323IaCaaTa11B.1.1.2140.000055
S323T323IaCaaTa11B.1.1.2160.00089
S323T323SAcaTca11B.1.1.250.000569
S323T323TacAacG11B.1.1.2650.003155
S323T323IaCaaTa11B.1.1.280.000311
S323T323IaCaaTa11B.1.1.2980.000862
S323T323SAcaTca11B.1.1.3010.001179
S323T323delACA---11B.1.1.3010.001179
S323T323TacAacG11B.1.1.3020.002075
S323T323IaCaaTa11B.1.1.3170.000412
S323T323IaCaaTa11B.1.1.3500.04
S323T323EACAGAG11B.1.1.4090.002833
S323T323IaCaaTa11B.1.1.4110.014706
S323T323delACA---11B.1.1.460.004367
S323T323TacAacG11B.1.1.500.000679
S323T323IaCaaTa11B.1.1.5280.004808
S323T323IaCaaTa11B.1.1.630.000386
S323T323LACaTTa11B.1.1.70.000001
S323T323KaCaaAa11B.1.1.70.000001
S323T323EACaGAa11B.1.1.70.000001
S323T323IaCaaTa11B.1.1.700.000341
S323T323TacAacG11B.1.1.890.006061
S323T323IaCaaTa11B.1.1280.000635
S323T323TacAacT11B.1.1600.000031
S323T323IaCaaTa11B.1.160.70.002079
S323T323IaCaaTa11B.1.177.120.000152
S323T323LACaTTa11B.1.177.160.000664
S323T323IaCaaTa11B.1.177.330.001645
S323T323TacAacT11B.1.177.450.000381
S323T323IaCaaTa11B.1.177.50.001242
S323T323IaCaaTa11B.1.177.560.000668
S323T323IaCaaTa11B.1.177.600.000218
S323T323IaCaaTa11B.1.177.860.000183
S323T323RaCaaGa11B.1.20.000009
S323T323PAcaCca11B.1.20.000009
S323T323delACA---11B.1.2210.000071
S323T323IaCaaTa11B.1.2340.000132
S323T323IaCaaTa11B.1.2380.014925
S323T323IaCaaTa11B.1.2400.000216
S323T323IaCaaTa11B.1.2410.000812
S323T323TacAacG11B.1.2430.00007
S323T323delACA---11B.1.2580.000067
S323T323IaCaaTa11B.1.258.70.001912
S323T323IaCaaTa11B.1.2980.002114
S323T323IaCaaTa11B.1.30.002618
S323T323IaCaaTa11B.1.3190.003049
S323T323IaCaaTa11B.1.3200.001245
S323T323TacAacC11B.1.3510.00003
S323T323PAcaCca11B.1.3510.00003
S323T323RaCaaGa11B.1.351.20.000303
S323T323IaCaaTa11B.1.36.250.002208
S323T323IaCaaTa11B.1.36.270.000763
S323T323IaCaaTa11B.1.36.290.000517
S323T323IaCaaTa11B.1.36.90.003215
S323T323IaCaaTa11B.1.3620.001541
S323T323IaCaaTa11B.1.3750.00082
S323T323LACaTTa11B.1.3910.001127
S323T323TacAacG11B.1.4000.000429
S323T323KaCaaAa11B.1.4160.001269
S323T323IaCaaTa11B.1.4270.00005
S323T323IaCaaTa11B.1.438.10.000107
S323T323IaCaaTa11B.1.466.20.000391
S323T323IaCaaTa11B.1.4990.00105
S323T323IaCaaTa11B.1.5090.000866
S323T323RaCaaGa11B.1.5250.000113
S323T323MaCAaTG11B.1.5250.000113
S323T323RaCaaGa11B.1.5260.000024
S323T323TacAacT11B.1.5640.000426
S323T323IaCaaTa11B.1.564.10.001577
S323T323IaCaaTa11B.1.5950.000261
S323T323RaCaaGa11B.1.5960.000087
S323T323IaCaaTa11B.1.617.10.000129
S323T323PAcaCca11B.1.617.10.000129
S323T323delACA---11B.1.617.20.000004
S323T323delACA---11B.1.6200.000946
S323T323IaCaaTa11B.1.6210.000089
S323T323delACA---11B.1.6300.005236
S323T323IaCaaTa11B.1.6340.003425
S323T323TacAacG11B.40.002208
S323T323IaCaaTa11C.160.00106
S323T323IaCaaTa11C.180.002591
S323T323IaCaaTa11C.360.000911
S323T323AAcaGca11D.20.000075
S323T323AAcaGca11P.10.000016
S323T323TacAacT11P.1.140.000048
S323T323IaCaaTa11P.1.90.004808
S323T323RaCaaGa11P.20.000187
S323T323IaCaaTa11P.70.004367
S323T323TacAacG11R.10.00009
S323T323IaCaaTa11W.30.005263