CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 32 | F32F | syn | ttC | ttT | 9321 | 9321 | 1 | 21656-21658 | |
S | 32 | F32L | nonsyn | Ttc | Ctc | 619 | 502 | 0.810985 | 21656-21658 | |
S | 32 | F32L | nonsyn | ttC | ttG | 619 | 65 | 0.105008 | 21656-21658 | |
S | 32 | F32L | nonsyn | ttC | ttA | 619 | 49 | 0.0791599 | 21656-21658 | |
S | 32 | F32L | nonsyn | TtC | CtT | 619 | 3 | 0.00484653 | 21656-21658 | |
S | 32 | F32del | del | TTC | --- | 83 | 83 | 1 | 21656-21658 | |
S | 32 | F32Y | nonsyn | tTc | tAc | 82 | 80 | 0.97561 | 21656-21658 | |
S | 32 | F32Y | nonsyn | tTC | tAT | 82 | 2 | 0.0243902 | 21656-21658 | |
S | 32 | F32S | nonsyn | tTc | tCc | 68 | 67 | 0.985294 | 21656-21658 | |
S | 32 | F32S | nonsyn | tTC | tCA | 68 | 1 | 0.0147059 | 21656-21658 | |
S | 32 | F32V | nonsyn | Ttc | Gtc | 24 | 24 | 1 | 21656-21658 | |
S | 32 | F32del2 | del | tTC | t-- | 13 | 9 | 0.692308 | 21656-21658 | |
S | 32 | F32del2 | del | TTC | --A | 13 | 2 | 0.153846 | 21656-21658 | |
S | 32 | F32del2 | del | TTc | --c | 13 | 1 | 0.0769231 | 21656-21658 | |
S | 32 | F32del2 | del | TTC | --N | 13 | 1 | 0.0769231 | 21656-21658 | |
S | 32 | F32del1 | del | ttC | tt- | 12 | 10 | 0.833333 | 21656-21658 | |
S | 32 | F32del1 | del | Ttc | -tc | 12 | 2 | 0.166667 | 21656-21658 | |
S | 32 | F32I | nonsyn | Ttc | Atc | 11 | 11 | 1 | 21656-21658 | |
S | 32 | F32X | nonsyn | tTC | tAA | 6 | 4 | 0.666667 | 21656-21658 | |
S | 32 | F32X | nonsyn | tTC | tAG | 6 | 2 | 0.333333 | 21656-21658 | |
S | 32 | F32C | nonsyn | tTc | tGc | 5 | 4 | 0.8 | 21656-21658 | |
S | 32 | F32C | nonsyn | tTC | tGT | 5 | 1 | 0.2 | 21656-21658 | |
S | 32 | F32M | nonsyn | TtC | AtG | 3 | 3 | 1 | 21656-21658 | |
S | 32 | F32P | nonsyn | TTC | CCT | 3 | 2 | 0.666667 | 21656-21658 | |
S | 32 | F32P | nonsyn | TTc | CCc | 3 | 1 | 0.333333 | 21656-21658 | |
S | 32 | F32K | nonsyn | TTC | AAG | 2 | 2 | 1 | 21656-21658 | |
S | 32 | F32N | nonsyn | TTc | AAc | 2 | 2 | 1 | 21656-21658 | |
S | 32 | F32E | nonsyn | TTC | GAA | 1 | 1 | 1 | 21656-21658 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 32 | F32F | ttC | ttT | 9321 | 9321 | All | 0.001783 |
S | 32 | F32F | ttC | ttT | 2543 | 2543 | B.1.1.7 | 0.002277 |
S | 32 | F32F | ttC | ttT | 1607 | 1607 | B.1.526 | 0.037772 |
S | 32 | F32L | Ttc | Ctc | 502 | 619 | All | 0.000096 |
S | 32 | F32L | ttC | ttG | 65 | 619 | All | 0.000012 |
S | 32 | F32L | ttC | ttA | 49 | 619 | All | 0.000009 |
S | 32 | F32L | TtC | CtT | 3 | 619 | All | 0.000001 |
S | 32 | F32F | ttC | ttT | 546 | 546 | AY.43 | 0.002419 |
S | 32 | F32F | ttC | ttT | 504 | 504 | AY.4 | 0.000784 |
S | 32 | F32F | ttC | ttT | 225 | 225 | AY.44 | 0.00137 |
S | 32 | F32F | ttC | ttT | 213 | 213 | B.1.617.2 | 0.000802 |
S | 32 | F32F | ttC | ttT | 198 | 198 | AY.25 | 0.001191 |
S | 32 | F32F | ttC | ttT | 198 | 198 | AY.3 | 0.001969 |
S | 32 | F32L | Ttc | Ctc | 184 | 194 | B.1.2 | 0.00162 |
S | 32 | F32L | ttC | ttA | 7 | 194 | B.1.2 | 0.000062 |
S | 32 | F32L | ttC | ttG | 3 | 194 | B.1.2 | 0.000026 |
S | 32 | F32F | ttC | ttT | 181 | 181 | B.1.2 | 0.001594 |
S | 32 | F32F | ttC | ttT | 167 | 167 | AY.103 | 0.001037 |
S | 32 | F32F | ttC | ttT | 149 | 149 | B.1.1.519 | 0.005917 |
S | 32 | F32F | ttC | ttT | 143 | 143 | B.1 | 0.00131 |
S | 32 | F32L | Ttc | Ctc | 131 | 131 | B.1.632 | 0.879195 |
S | 32 | F32F | ttC | ttT | 130 | 130 | B.1.177 | 0.001712 |
S | 32 | F32F | ttC | ttT | 114 | 114 | A.27 | 0.188742 |
S | 32 | F32F | ttC | ttT | 90 | 90 | P.1 | 0.001418 |
S | 32 | F32del | TTC | --- | 83 | 83 | All | 0.000016 |
S | 32 | F32Y | tTc | tAc | 80 | 82 | All | 0.000015 |
S | 32 | F32Y | tTC | tAT | 2 | 82 | All | 0 |
S | 32 | F32F | ttC | ttT | 80 | 80 | B.1.1.517 | 0.544218 |
S | 32 | F32F | ttC | ttT | 77 | 77 | B.1.258.17 | 0.008006 |
S | 32 | F32F | ttC | ttT | 76 | 76 | B.1.221.3 | 0.063333 |
S | 32 | F32F | ttC | ttT | 73 | 73 | P.1.10 | 0.019671 |
S | 32 | F32S | tTc | tCc | 67 | 68 | All | 0.000013 |
S | 32 | F32S | tTC | tCA | 1 | 68 | All | 0 |
S | 32 | F32F | ttC | ttT | 67 | 67 | B.1.1 | 0.001215 |
S | 32 | F32L | Ttc | Ctc | 42 | 62 | B.1.1.7 | 0.000038 |
S | 32 | F32L | ttC | ttG | 15 | 62 | B.1.1.7 | 0.000013 |
S | 32 | F32L | ttC | ttA | 5 | 62 | B.1.1.7 | 0.000004 |
S | 32 | F32F | ttC | ttT | 59 | 59 | AY.26 | 0.00167 |
S | 32 | F32F | ttC | ttT | 59 | 59 | B.1.637 | 0.004311 |
S | 32 | F32F | ttC | ttT | 58 | 58 | B.1.429 | 0.001365 |
S | 32 | F32F | ttC | ttT | 57 | 57 | B.1.609 | 0.027325 |
S | 32 | F32F | ttC | ttT | 56 | 56 | B.1.1.25 | 0.031836 |
S | 32 | F32F | ttC | ttT | 54 | 54 | B.1.160 | 0.001684 |
S | 32 | F32F | ttC | ttT | 47 | 47 | AY.4.2 | 0.001019 |
S | 32 | F32F | ttC | ttT | 45 | 45 | B.1.351 | 0.001338 |
S | 32 | F32F | ttC | ttT | 44 | 44 | AY.39 | 0.001087 |
S | 32 | F32F | ttC | ttT | 44 | 44 | B.1.1.343 | 0.916667 |
S | 32 | F32Y | tTc | tAc | 42 | 42 | AY.13 | 0.006761 |
S | 32 | F32F | ttC | ttT | 41 | 41 | AY.61 | 0.004296 |
S | 32 | F32F | ttC | ttT | 41 | 41 | AY.98.1 | 0.001986 |
S | 32 | F32F | ttC | ttT | 35 | 35 | AY.20 | 0.00136 |
S | 32 | F32F | ttC | ttT | 30 | 30 | B.1.258 | 0.001996 |
S | 32 | F32F | ttC | ttT | 27 | 27 | AY.5 | 0.000558 |
S | 32 | F32F | ttC | ttT | 27 | 27 | AY.5.3 | 0.009109 |
S | 32 | F32F | ttC | ttT | 26 | 26 | AY.100 | 0.001196 |
S | 32 | F32F | ttC | ttT | 25 | 25 | AY.39.1 | 0.00099 |
S | 32 | F32L | Ttc | Ctc | 16 | 25 | AY.4 | 0.000025 |
S | 32 | F32L | ttC | ttG | 6 | 25 | AY.4 | 0.000009 |
S | 32 | F32L | ttC | ttA | 3 | 25 | AY.4 | 0.000005 |
S | 32 | F32V | Ttc | Gtc | 24 | 24 | All | 0.000005 |
S | 32 | F32F | ttC | ttT | 24 | 24 | B.1.1.214 | 0.001331 |
S | 32 | F32Y | tTc | tAc | 24 | 24 | B.1.1.7 | 0.000021 |
S | 32 | F32F | ttC | ttT | 24 | 24 | B.1.177.77 | 0.017429 |
S | 32 | F32F | ttC | ttT | 24 | 24 | B.1.427 | 0.001212 |
S | 32 | F32F | ttC | ttT | 23 | 23 | P.2 | 0.004293 |
S | 32 | F32F | ttC | ttT | 22 | 22 | AY.16 | 0.008352 |
S | 32 | F32F | ttC | ttT | 22 | 22 | AY.54 | 0.002098 |
S | 32 | F32F | ttC | ttT | 22 | 22 | B.1.36 | 0.00321 |
S | 32 | F32F | ttC | ttT | 22 | 22 | B.1.628 | 0.007752 |
S | 32 | F32F | ttC | ttT | 21 | 21 | AY.102 | 0.000557 |
S | 32 | F32F | ttC | ttT | 21 | 21 | AY.29 | 0.000331 |
S | 32 | F32L | Ttc | Ctc | 11 | 20 | B.1 | 0.000101 |
S | 32 | F32L | ttC | ttA | 5 | 20 | B.1 | 0.000046 |
S | 32 | F32L | ttC | ttG | 4 | 20 | B.1 | 0.000037 |
S | 32 | F32F | ttC | ttT | 20 | 20 | R.1 | 0.0018 |
S | 32 | F32F | ttC | ttT | 18 | 18 | A | 0.006966 |
S | 32 | F32L | Ttc | Ctc | 18 | 18 | AY.25 | 0.000108 |
S | 32 | F32F | ttC | ttT | 17 | 17 | AY.46.6 | 0.001228 |
S | 32 | F32F | ttC | ttT | 17 | 17 | B.1.433 | 0.054313 |
S | 32 | F32F | ttC | ttT | 16 | 16 | B.1.621 | 0.001416 |
S | 32 | F32F | ttC | ttT | 15 | 15 | AY.116.1 | 0.004671 |
S | 32 | F32del | TTC | --- | 15 | 15 | B.1.1.7 | 0.000013 |
S | 32 | F32F | ttC | ttT | 15 | 15 | B.4 | 0.033113 |
S | 32 | F32F | ttC | ttT | 15 | 15 | C.37 | 0.001741 |
S | 32 | F32F | ttC | ttT | 15 | 15 | P.1.14 | 0.000717 |
S | 32 | F32F | ttC | ttT | 14 | 14 | AY.101 | 0.006866 |
S | 32 | F32L | Ttc | Ctc | 11 | 14 | AY.44 | 0.000067 |
S | 32 | F32L | ttC | ttG | 2 | 14 | AY.44 | 0.000012 |
S | 32 | F32L | TtC | CtT | 1 | 14 | AY.44 | 0.000006 |
S | 32 | F32F | ttC | ttT | 14 | 14 | AY.9.2 | 0.000514 |
S | 32 | F32L | Ttc | Ctc | 10 | 14 | B.1.617.2 | 0.000038 |
S | 32 | F32L | ttC | ttG | 4 | 14 | B.1.617.2 | 0.000015 |
S | 32 | F32del2 | tTC | t-- | 9 | 13 | All | 0.000002 |
S | 32 | F32del2 | TTC | --A | 2 | 13 | All | 0 |
S | 32 | F32del2 | TTc | --c | 1 | 13 | All | 0 |
S | 32 | F32del2 | TTC | --N | 1 | 13 | All | 0 |
S | 32 | F32F | ttC | ttT | 13 | 13 | B.1.1.1 | 0.004247 |
S | 32 | F32F | ttC | ttT | 13 | 13 | B.1.1.311 | 0.004656 |
S | 32 | F32del1 | ttC | tt- | 10 | 12 | All | 0.000002 |
S | 32 | F32del1 | Ttc | -tc | 2 | 12 | All | 0 |
S | 32 | F32F | ttC | ttT | 12 | 12 | AY.119 | 0.000424 |
S | 32 | F32F | ttC | ttT | 12 | 12 | AY.120 | 0.000446 |
S | 32 | F32F | ttC | ttT | 12 | 12 | B.1.1.420 | 0.012072 |
S | 32 | F32F | ttC | ttT | 12 | 12 | B.1.232 | 0.006448 |
S | 32 | F32L | Ttc | Ctc | 12 | 12 | B.1.390 | 0.12766 |
S | 32 | F32F | ttC | ttT | 12 | 12 | B.1.568 | 0.013333 |
S | 32 | F32I | Ttc | Atc | 11 | 11 | All | 0.000002 |
S | 32 | F32F | ttC | ttT | 11 | 11 | AZ.1 | 0.00954 |
S | 32 | F32S | tTc | tCc | 11 | 11 | B.1.1.7 | 0.00001 |
S | 32 | F32F | ttC | ttT | 11 | 11 | P.1.16 | 0.004115 |
S | 32 | F32F | ttC | ttT | 10 | 10 | AY.33 | 0.000668 |
S | 32 | F32F | ttC | ttT | 10 | 10 | AY.6 | 0.000411 |
S | 32 | F32F | ttC | ttT | 9 | 9 | AY.117 | 0.000761 |
S | 32 | F32S | tTc | tCc | 9 | 9 | AY.4 | 0.000014 |
S | 32 | F32F | ttC | ttT | 9 | 9 | AY.7 | 0.001764 |
S | 32 | F32F | ttC | ttT | 9 | 9 | B.1.177.20 | 0.013657 |
S | 32 | F32F | ttC | ttT | 9 | 9 | B.1.438.1 | 0.000965 |
S | 32 | F32F | ttC | ttT | 9 | 9 | B.1.525 | 0.001018 |
S | 32 | F32F | ttC | ttT | 9 | 9 | B.1.596 | 0.000784 |
S | 32 | F32L | Ttc | Ctc | 9 | 9 | B.1.627 | 0.018182 |
S | 32 | F32F | ttC | ttT | 9 | 9 | B.1.638 | 0.473684 |
S | 32 | F32F | ttC | ttT | 9 | 9 | B.4.5 | 0.107143 |
S | 32 | F32F | ttC | ttT | 8 | 8 | AY.110 | 0.000902 |
S | 32 | F32F | ttC | ttT | 8 | 8 | AY.23 | 0.000558 |
S | 32 | F32del | TTC | --- | 8 | 8 | AY.33 | 0.000534 |
S | 32 | F32F | ttC | ttT | 8 | 8 | AY.47 | 0.000249 |
S | 32 | F32F | ttC | ttT | 8 | 8 | AY.98 | 0.000632 |
S | 32 | F32F | ttC | ttT | 8 | 8 | B.1.1.33 | 0.003367 |
S | 32 | F32F | ttC | ttT | 8 | 8 | B.1.36.10 | 0.038278 |
S | 32 | F32F | ttC | ttT | 8 | 8 | C.35 | 0.006192 |
S | 32 | F32F | ttC | ttT | 8 | 8 | D.2 | 0.0006 |
S | 32 | F32F | ttC | ttT | 7 | 7 | B.1.1.70 | 0.002387 |
S | 32 | F32del | TTC | --- | 7 | 7 | B.1.177 | 0.000092 |
S | 32 | F32F | ttC | ttT | 7 | 7 | B.1.221 | 0.000497 |
S | 32 | F32F | ttC | ttT | 7 | 7 | B.1.243 | 0.000487 |
S | 32 | F32F | ttC | ttT | 7 | 7 | B.1.351.3 | 0.006135 |
S | 32 | F32F | ttC | ttT | 7 | 7 | B.1.36.29 | 0.003621 |
S | 32 | F32X | tTC | tAA | 4 | 6 | All | 0.000001 |
S | 32 | F32X | tTC | tAG | 2 | 6 | All | 0 |
S | 32 | F32F | ttC | ttT | 6 | 6 | AY.109 | 0.004438 |
S | 32 | F32F | ttC | ttT | 6 | 6 | AY.27 | 0.000388 |
S | 32 | F32F | ttC | ttT | 6 | 6 | AY.3.1 | 0.000512 |
S | 32 | F32L | ttC | ttG | 3 | 6 | AY.43 | 0.000013 |
S | 32 | F32L | Ttc | Ctc | 2 | 6 | AY.43 | 0.000009 |
S | 32 | F32L | ttC | ttA | 1 | 6 | AY.43 | 0.000004 |
S | 32 | F32S | tTc | tCc | 6 | 6 | AY.44 | 0.000037 |
S | 32 | F32F | ttC | ttT | 6 | 6 | AY.46.4 | 0.000987 |
S | 32 | F32F | ttC | ttT | 6 | 6 | AY.75 | 0.000336 |
S | 32 | F32F | ttC | ttT | 6 | 6 | B | 0.000767 |
S | 32 | F32F | ttC | ttT | 6 | 6 | B.1.1.28 | 0.001867 |
S | 32 | F32F | ttC | ttT | 6 | 6 | B.1.160.14 | 0.012712 |
S | 32 | F32F | ttC | ttT | 6 | 6 | B.1.36.8 | 0.006 |
S | 32 | F32S | tTc | tCc | 6 | 6 | B.1.617.1 | 0.000774 |
S | 32 | F32F | ttC | ttT | 6 | 6 | Q.8 | 0.000989 |
S | 32 | F32C | tTc | tGc | 4 | 5 | All | 0.000001 |
S | 32 | F32C | tTC | tGT | 1 | 5 | All | 0 |
S | 32 | F32L | ttC | ttA | 5 | 5 | AY.119 | 0.000177 |
S | 32 | F32F | ttC | ttT | 5 | 5 | AY.32 | 0.002662 |
S | 32 | F32del | TTC | --- | 5 | 5 | AY.43 | 0.000022 |
S | 32 | F32F | ttC | ttT | 5 | 5 | AY.88 | 0.004421 |
S | 32 | F32del | TTC | --- | 5 | 5 | B.1.1 | 0.000091 |
S | 32 | F32V | Ttc | Gtc | 5 | 5 | B.1.1.7 | 0.000004 |
S | 32 | F32L | ttC | ttG | 5 | 5 | B.1.422 | 0.004062 |
S | 32 | F32F | ttC | ttT | 5 | 5 | B.1.470 | 0.007022 |
S | 32 | F32F | ttC | ttT | 5 | 5 | B.1.617.1 | 0.000645 |
S | 32 | F32F | ttC | ttT | 5 | 5 | B.1.620 | 0.00473 |
S | 32 | F32L | ttC | ttA | 3 | 4 | AY.103 | 0.000019 |
S | 32 | F32L | Ttc | Ctc | 1 | 4 | AY.103 | 0.000006 |
S | 32 | F32F | ttC | ttT | 4 | 4 | AY.12 | 0.001264 |
S | 32 | F32F | ttC | ttT | 4 | 4 | AY.14 | 0.000352 |
S | 32 | F32F | ttC | ttT | 4 | 4 | AY.37 | 0.001264 |
S | 32 | F32F | ttC | ttT | 4 | 4 | AY.42 | 0.000161 |
S | 32 | F32V | Ttc | Gtc | 4 | 4 | AY.43 | 0.000018 |
S | 32 | F32F | ttC | ttT | 4 | 4 | AY.74 | 0.000463 |
S | 32 | F32Y | tTc | tAc | 4 | 4 | B.1 | 0.000037 |
S | 32 | F32F | ttC | ttT | 4 | 4 | B.1.1.258 | 0.013029 |
S | 32 | F32I | Ttc | Atc | 4 | 4 | B.1.1.7 | 0.000004 |
S | 32 | F32F | ttC | ttT | 4 | 4 | B.1.177.44 | 0.002076 |
S | 32 | F32F | ttC | ttT | 4 | 4 | B.1.177.81 | 0.000757 |
S | 32 | F32F | ttC | ttT | 4 | 4 | B.1.177.83 | 0.005926 |
S | 32 | F32F | ttC | ttT | 4 | 4 | B.1.409 | 0.003125 |
S | 32 | F32F | ttC | ttT | 4 | 4 | B.1.70 | 0.097561 |
S | 32 | F32Y | tTc | tAc | 3 | 3 | 0.166667 | |
S | 32 | F32F | ttC | ttT | 3 | 3 | A.2.5 | 0.001497 |
S | 32 | F32F | ttC | ttT | 3 | 3 | A.29 | 0.015957 |
S | 32 | F32M | TtC | AtG | 3 | 3 | All | 0.000001 |
S | 32 | F32P | TTC | CCT | 2 | 3 | All | 0 |
S | 32 | F32P | TTc | CCc | 1 | 3 | All | 0 |
S | 32 | F32S | tTc | tCc | 3 | 3 | AY.101 | 0.001471 |
S | 32 | F32F | ttC | ttT | 3 | 3 | AY.113 | 0.000427 |
S | 32 | F32L | Ttc | Ctc | 3 | 3 | AY.118 | 0.000188 |
S | 32 | F32F | ttC | ttT | 3 | 3 | AY.120.1 | 0.000963 |
S | 32 | F32F | ttC | ttT | 3 | 3 | AY.121 | 0.000406 |
S | 32 | F32F | ttC | ttT | 3 | 3 | AY.19 | 0.003421 |
S | 32 | F32del | TTC | --- | 3 | 3 | AY.25 | 0.000018 |
S | 32 | F32S | tTc | tCc | 3 | 3 | AY.25 | 0.000018 |
S | 32 | F32del2 | tTC | t-- | 3 | 3 | AY.3 | 0.00003 |
S | 32 | F32del | TTC | --- | 3 | 3 | AY.4 | 0.000005 |
S | 32 | F32del1 | ttC | tt- | 2 | 3 | AY.4 | 0.000003 |
S | 32 | F32del1 | Ttc | -tc | 1 | 3 | AY.4 | 0.000002 |
S | 32 | F32S | tTc | tCc | 3 | 3 | AY.43 | 0.000013 |
S | 32 | F32F | ttC | ttT | 3 | 3 | AY.45 | 0.000365 |
S | 32 | F32F | ttC | ttT | 3 | 3 | AY.5.4 | 0.00083 |
S | 32 | F32F | ttC | ttT | 3 | 3 | AY.51 | 0.002727 |
S | 32 | F32F | ttC | ttT | 3 | 3 | AY.63 | 0.001161 |
S | 32 | F32L | Ttc | Ctc | 3 | 3 | AY.65 | 0.001599 |
S | 32 | F32F | ttC | ttT | 3 | 3 | AY.75.1 | 0.000541 |
S | 32 | F32F | ttC | ttT | 3 | 3 | AY.78 | 0.004622 |
S | 32 | F32F | ttC | ttT | 3 | 3 | AY.9 | 0.000203 |
S | 32 | F32del | TTC | --- | 3 | 3 | B.1 | 0.000027 |
S | 32 | F32L | ttC | ttA | 2 | 3 | B.1.1 | 0.000036 |
S | 32 | F32L | Ttc | Ctc | 1 | 3 | B.1.1 | 0.000018 |
S | 32 | F32F | ttC | ttT | 3 | 3 | B.1.1.222 | 0.000612 |
S | 32 | F32F | ttC | ttT | 3 | 3 | B.1.1.225 | 0.021583 |
S | 32 | F32F | ttC | ttT | 3 | 3 | B.1.1.277 | 0.002276 |
S | 32 | F32P | TTC | CCT | 2 | 3 | B.1.1.7 | 0.000002 |
S | 32 | F32P | TTc | CCc | 1 | 3 | B.1.1.7 | 0.000001 |
S | 32 | F32L | Ttc | Ctc | 2 | 3 | B.1.160 | 0.000062 |
S | 32 | F32L | ttC | ttA | 1 | 3 | B.1.160 | 0.000031 |
S | 32 | F32L | Ttc | Ctc | 3 | 3 | B.1.160.26 | 0.007264 |
S | 32 | F32L | Ttc | Ctc | 2 | 3 | B.1.177 | 0.000026 |
S | 32 | F32L | ttC | ttG | 1 | 3 | B.1.177 | 0.000013 |
S | 32 | F32F | ttC | ttT | 3 | 3 | B.1.177.62 | 0.003576 |
S | 32 | F32del1 | ttC | tt- | 3 | 3 | B.1.2 | 0.000026 |
S | 32 | F32L | ttC | ttG | 3 | 3 | B.1.36.17 | 0.001482 |
S | 32 | F32F | ttC | ttT | 3 | 3 | B.1.36.18 | 0.001261 |
S | 32 | F32F | ttC | ttT | 3 | 3 | B.1.369 | 0.000856 |
S | 32 | F32F | ttC | ttT | 3 | 3 | B.1.371 | 0.003367 |
S | 32 | F32L | ttC | ttG | 2 | 3 | B.1.429 | 0.000047 |
S | 32 | F32L | Ttc | Ctc | 1 | 3 | B.1.429 | 0.000024 |
S | 32 | F32F | ttC | ttT | 3 | 3 | B.1.466.2 | 0.001174 |
S | 32 | F32F | ttC | ttT | 3 | 3 | B.1.517 | 0.001281 |
S | 32 | F32F | ttC | ttT | 3 | 3 | B.1.539 | 0.052632 |
S | 32 | F32F | ttC | ttT | 3 | 3 | B.1.575 | 0.00091 |
S | 32 | F32F | ttC | ttT | 3 | 3 | B.1.595 | 0.000783 |
S | 32 | F32L | Ttc | Ctc | 1 | 3 | B.1.595 | 0.000261 |
S | 32 | F32L | ttC | ttA | 1 | 3 | B.1.595 | 0.000261 |
S | 32 | F32L | TtC | CtT | 1 | 3 | B.1.595 | 0.000261 |
S | 32 | F32L | ttC | ttA | 1 | 3 | B.1.596 | 0.000087 |
S | 32 | F32L | ttC | ttG | 1 | 3 | B.1.596 | 0.000087 |
S | 32 | F32L | Ttc | Ctc | 1 | 3 | B.1.596 | 0.000087 |
S | 32 | F32F | ttC | ttT | 3 | 3 | N.5 | 0.0053 |
S | 32 | F32F | ttC | ttT | 3 | 3 | N.9 | 0.017857 |
S | 32 | F32F | ttC | ttT | 3 | 3 | P.1.15 | 0.000697 |
S | 32 | F32F | ttC | ttT | 3 | 3 | W.2 | 0.014493 |
S | 32 | F32X | tTC | tAG | 2 | 2 | 0.111111 | |
S | 32 | F32F | ttC | ttT | 2 | 2 | 0.111111 | |
S | 32 | F32L | ttC | ttG | 2 | 2 | 0.111111 | |
S | 32 | F32K | TTC | AAG | 2 | 2 | 0.111111 | |
S | 32 | F32N | TTc | AAc | 2 | 2 | 0.111111 | |
S | 32 | F32I | Ttc | Atc | 2 | 2 | 0.111111 | |
S | 32 | F32M | TtC | AtG | 2 | 2 | 0.111111 | |
S | 32 | F32F | ttC | ttT | 2 | 2 | A.1 | 0.000564 |
S | 32 | F32Y | tTc | tAc | 2 | 2 | A.2 | 0.001324 |
S | 32 | F32F | ttC | ttT | 2 | 2 | A.2 | 0.001324 |
S | 32 | F32F | ttC | ttT | 2 | 2 | AD.2 | 0.000438 |
S | 32 | F32K | TTC | AAG | 2 | 2 | All | 0 |
S | 32 | F32N | TTc | AAc | 2 | 2 | All | 0 |
S | 32 | F32L | Ttc | Ctc | 2 | 2 | AY.100 | 0.000092 |
S | 32 | F32del | TTC | --- | 2 | 2 | AY.100 | 0.000092 |
S | 32 | F32del | TTC | --- | 2 | 2 | AY.102 | 0.000053 |
S | 32 | F32del | TTC | --- | 2 | 2 | AY.103 | 0.000012 |
S | 32 | F32F | ttC | ttT | 2 | 2 | AY.105 | 0.001286 |
S | 32 | F32F | ttC | ttT | 2 | 2 | AY.106 | 0.00067 |
S | 32 | F32F | ttC | ttT | 2 | 2 | AY.116 | 0.000574 |
S | 32 | F32F | ttC | ttT | 2 | 2 | AY.22 | 0.004184 |
S | 32 | F32L | ttC | ttA | 2 | 2 | AY.26 | 0.000057 |
S | 32 | F32S | tTc | tCc | 2 | 2 | AY.3.1 | 0.000171 |
S | 32 | F32L | Ttc | Ctc | 2 | 2 | AY.3.1 | 0.000171 |
S | 32 | F32L | Ttc | Ctc | 2 | 2 | AY.30 | 0.000791 |
S | 32 | F32L | ttC | ttA | 2 | 2 | AY.32 | 0.001065 |
S | 32 | F32F | ttC | ttT | 2 | 2 | AY.34 | 0.000194 |
S | 32 | F32del | TTC | --- | 2 | 2 | AY.34.1 | 0.00102 |
S | 32 | F32F | ttC | ttT | 2 | 2 | AY.34.1 | 0.00102 |
S | 32 | F32V | Ttc | Gtc | 2 | 2 | AY.4.2 | 0.000043 |
S | 32 | F32F | ttC | ttT | 2 | 2 | AY.4.5 | 0.000215 |
S | 32 | F32del | TTC | --- | 2 | 2 | AY.44 | 0.000012 |
S | 32 | F32L | Ttc | Ctc | 2 | 2 | AY.46 | 0.000208 |
S | 32 | F32F | ttC | ttT | 2 | 2 | AY.46.2 | 0.001271 |
S | 32 | F32S | tTc | tCc | 2 | 2 | AY.47 | 0.000062 |
S | 32 | F32F | ttC | ttT | 2 | 2 | AY.49 | 0.00639 |
S | 32 | F32V | Ttc | Gtc | 2 | 2 | AY.59 | 0.001059 |
S | 32 | F32F | ttC | ttT | 2 | 2 | AY.62 | 0.000871 |
S | 32 | F32L | ttC | ttG | 2 | 2 | AY.67 | 0.000929 |
S | 32 | F32F | ttC | ttT | 2 | 2 | AY.67 | 0.000929 |
S | 32 | F32F | ttC | ttT | 2 | 2 | AY.70 | 0.000417 |
S | 32 | F32S | tTc | tCc | 2 | 2 | AY.75 | 0.000112 |
S | 32 | F32F | ttC | ttT | 2 | 2 | AY.9.1 | 0.000167 |
S | 32 | F32F | ttC | ttT | 2 | 2 | AY.93 | 0.000546 |
S | 32 | F32F | ttC | ttT | 2 | 2 | AY.95 | 0.001522 |
S | 32 | F32F | ttC | ttT | 2 | 2 | AY.99.2 | 0.000184 |
S | 32 | F32L | Ttc | Ctc | 1 | 2 | B | 0.000128 |
S | 32 | F32L | ttC | ttA | 1 | 2 | B | 0.000128 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.1.109 | 0.08 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.1.171 | 0.007353 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.1.216 | 0.001781 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.1.265 | 0.006309 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.1.284 | 0.000215 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.1.291 | 0.001485 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.1.317 | 0.000823 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.1.348 | 0.001592 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.1.369 | 0.000892 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.1.37 | 0.000386 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.1.39 | 0.001019 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.1.398 | 0.006452 |
S | 32 | F32Y | tTC | tAT | 2 | 2 | B.1.1.46 | 0.008734 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.1.50 | 0.001358 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.128 | 0.001271 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.160.22 | 0.013514 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.177.12 | 0.000303 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.177.33 | 0.003289 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.177.54 | 0.001213 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.177.60 | 0.000437 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.177.7 | 0.00033 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.177.86 | 0.000367 |
S | 32 | F32Y | tTc | tAc | 2 | 2 | B.1.2 | 0.000018 |
S | 32 | F32V | Ttc | Gtc | 2 | 2 | B.1.2 | 0.000018 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.219 | 0.018868 |
S | 32 | F32L | ttC | ttG | 1 | 2 | B.1.221 | 0.000071 |
S | 32 | F32L | Ttc | Ctc | 1 | 2 | B.1.221 | 0.000071 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.240 | 0.000431 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.241 | 0.001623 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.260 | 0.006689 |
S | 32 | F32L | ttC | ttG | 2 | 2 | B.1.268 | 0.020833 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.320 | 0.002491 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.36.36 | 0.001204 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.361 | 0.002577 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.404 | 0.002604 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.422 | 0.001625 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.426 | 0.002018 |
S | 32 | F32S | tTc | tCc | 2 | 2 | B.1.427 | 0.000101 |
S | 32 | F32del | TTC | --- | 2 | 2 | B.1.525 | 0.000226 |
S | 32 | F32L | Ttc | Ctc | 2 | 2 | B.1.526 | 0.000047 |
S | 32 | F32L | Ttc | Ctc | 1 | 2 | B.1.589 | 0.007576 |
S | 32 | F32L | TtC | CtT | 1 | 2 | B.1.589 | 0.007576 |
S | 32 | F32del1 | ttC | tt- | 2 | 2 | B.1.617.2 | 0.000008 |
S | 32 | F32del | TTC | --- | 2 | 2 | B.1.617.2 | 0.000008 |
S | 32 | F32L | Ttc | Ctc | 2 | 2 | B.1.623 | 0.001073 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.625 | 0.004706 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.634 | 0.006849 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.9.4 | 0.01227 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.1.9.5 | 0.011364 |
S | 32 | F32F | ttC | ttT | 2 | 2 | B.40 | 0.000729 |
S | 32 | F32F | ttC | ttT | 2 | 2 | C.36 | 0.001821 |
S | 32 | F32del2 | TTC | --A | 2 | 2 | P.1 | 0.000032 |
S | 32 | F32L | Ttc | Ctc | 2 | 2 | P.1 | 0.000032 |
S | 32 | F32L | ttC | ttA | 2 | 2 | P.1.12 | 0.000968 |
S | 32 | F32S | tTc | tCc | 1 | 1 | 0.055556 | |
S | 32 | F32I | Ttc | Atc | 1 | 1 | A | 0.000387 |
S | 32 | F32L | Ttc | Ctc | 1 | 1 | A.2 | 0.000662 |
S | 32 | F32S | tTc | tCc | 1 | 1 | A.2.4 | 0.003367 |
S | 32 | F32del | TTC | --- | 1 | 1 | A.2.4 | 0.003367 |
S | 32 | F32F | ttC | ttT | 1 | 1 | AA.2 | 0.007692 |
S | 32 | F32F | ttC | ttT | 1 | 1 | AE.8 | 0.000489 |
S | 32 | F32E | TTC | GAA | 1 | 1 | All | 0 |
S | 32 | F32F | ttC | ttT | 1 | 1 | AY.1 | 0.000396 |
S | 32 | F32del1 | ttC | tt- | 1 | 1 | AY.100 | 0.000046 |
S | 32 | F32del | TTC | --- | 1 | 1 | AY.101 | 0.00049 |
S | 32 | F32I | Ttc | Atc | 1 | 1 | AY.103 | 0.000006 |
S | 32 | F32S | tTc | tCc | 1 | 1 | AY.103 | 0.000006 |
S | 32 | F32L | Ttc | Ctc | 1 | 1 | AY.108 | 0.001103 |
S | 32 | F32del | TTC | --- | 1 | 1 | AY.108 | 0.001103 |
S | 32 | F32L | Ttc | Ctc | 1 | 1 | AY.109 | 0.00074 |
S | 32 | F32F | ttC | ttT | 1 | 1 | AY.111 | 0.000183 |
S | 32 | F32L | ttC | ttA | 1 | 1 | AY.117 | 0.000085 |
S | 32 | F32S | tTc | tCc | 1 | 1 | AY.117 | 0.000085 |
S | 32 | F32F | ttC | ttT | 1 | 1 | AY.118 | 0.000063 |
S | 32 | F32del2 | tTC | t-- | 1 | 1 | AY.13 | 0.000161 |
S | 32 | F32F | ttC | ttT | 1 | 1 | AY.17 | 0.008197 |
S | 32 | F32F | ttC | ttT | 1 | 1 | AY.2 | 0.000356 |
S | 32 | F32L | ttC | ttG | 1 | 1 | AY.2 | 0.000356 |
S | 32 | F32L | Ttc | Ctc | 1 | 1 | AY.23 | 0.00007 |
S | 32 | F32F | ttC | ttT | 1 | 1 | AY.23.1 | 0.000417 |
S | 32 | F32S | tTc | tCc | 1 | 1 | AY.23.1 | 0.000417 |
S | 32 | F32F | ttC | ttT | 1 | 1 | AY.24 | 0.000431 |
S | 32 | F32V | Ttc | Gtc | 1 | 1 | AY.26 | 0.000028 |
S | 32 | F32C | tTc | tGc | 1 | 1 | AY.3 | 0.00001 |
S | 32 | F32L | ttC | ttG | 1 | 1 | AY.3 | 0.00001 |
S | 32 | F32S | tTc | tCc | 1 | 1 | AY.3 | 0.00001 |
S | 32 | F32del | TTC | --- | 1 | 1 | AY.3 | 0.00001 |
S | 32 | F32del2 | TTC | --N | 1 | 1 | AY.33 | 0.000067 |
S | 32 | F32F | ttC | ttT | 1 | 1 | AY.36 | 0.000148 |
S | 32 | F32del2 | tTC | t-- | 1 | 1 | AY.39 | 0.000025 |
S | 32 | F32V | Ttc | Gtc | 1 | 1 | AY.39 | 0.000025 |
S | 32 | F32C | tTc | tGc | 1 | 1 | AY.4 | 0.000002 |
S | 32 | F32F | ttC | ttT | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 32 | F32F | ttC | ttT | 1 | 1 | AY.4.3 | 0.000842 |
S | 32 | F32del | TTC | --- | 1 | 1 | AY.4.5 | 0.000107 |
S | 32 | F32F | ttC | ttT | 1 | 1 | AY.40 | 0.000964 |
S | 32 | F32F | ttC | ttT | 1 | 1 | AY.41 | 0.000294 |
S | 32 | F32del | TTC | --- | 1 | 1 | AY.42 | 0.00004 |
S | 32 | F32S | tTC | tCA | 1 | 1 | AY.42 | 0.00004 |
S | 32 | F32del2 | tTC | t-- | 1 | 1 | AY.43 | 0.000004 |
S | 32 | F32F | ttC | ttT | 1 | 1 | AY.46 | 0.000104 |
S | 32 | F32del | TTC | --- | 1 | 1 | AY.46.1 | 0.001027 |
S | 32 | F32S | tTc | tCc | 1 | 1 | AY.46.4 | 0.000165 |
S | 32 | F32C | tTc | tGc | 1 | 1 | AY.47 | 0.000031 |
S | 32 | F32I | Ttc | Atc | 1 | 1 | AY.47 | 0.000031 |
S | 32 | F32F | ttC | ttT | 1 | 1 | AY.48 | 0.000465 |
S | 32 | F32F | ttC | ttT | 1 | 1 | AY.5.1 | 0.003759 |
S | 32 | F32L | ttC | ttG | 1 | 1 | AY.5.3 | 0.000337 |
S | 32 | F32L | Ttc | Ctc | 1 | 1 | AY.54 | 0.000095 |
S | 32 | F32F | ttC | ttT | 1 | 1 | AY.55 | 0.000917 |
S | 32 | F32F | ttC | ttT | 1 | 1 | AY.57 | 0.000656 |
S | 32 | F32F | ttC | ttT | 1 | 1 | AY.60 | 0.000938 |
S | 32 | F32F | ttC | ttT | 1 | 1 | AY.64 | 0.000595 |
S | 32 | F32del | TTC | --- | 1 | 1 | AY.68 | 0.000274 |
S | 32 | F32F | ttC | ttT | 1 | 1 | AY.68 | 0.000274 |
S | 32 | F32F | ttC | ttT | 1 | 1 | AY.69 | 0.000187 |
S | 32 | F32Y | tTc | tAc | 1 | 1 | AY.7 | 0.000196 |
S | 32 | F32L | ttC | ttG | 1 | 1 | AY.7 | 0.000196 |
S | 32 | F32F | ttC | ttT | 1 | 1 | AY.71 | 0.000475 |
S | 32 | F32F | ttC | ttT | 1 | 1 | AY.73 | 0.000665 |
S | 32 | F32L | ttC | ttA | 1 | 1 | AY.75.1 | 0.00018 |
S | 32 | F32F | ttC | ttT | 1 | 1 | AY.85 | 0.000427 |
S | 32 | F32L | Ttc | Ctc | 1 | 1 | AY.9.1 | 0.000084 |
S | 32 | F32F | ttC | ttT | 1 | 1 | AY.96 | 0.002075 |
S | 32 | F32S | tTc | tCc | 1 | 1 | AY.98 | 0.000079 |
S | 32 | F32I | Ttc | Atc | 1 | 1 | B | 0.000128 |
S | 32 | F32V | Ttc | Gtc | 1 | 1 | B | 0.000128 |
S | 32 | F32S | tTc | tCc | 1 | 1 | B | 0.000128 |
S | 32 | F32X | tTC | tAA | 1 | 1 | B.1 | 0.000009 |
S | 32 | F32del1 | ttC | tt- | 1 | 1 | B.1 | 0.000009 |
S | 32 | F32S | tTc | tCc | 1 | 1 | B.1 | 0.000009 |
S | 32 | F32X | tTC | tAA | 1 | 1 | B.1.1 | 0.000018 |
S | 32 | F32del2 | tTC | t-- | 1 | 1 | B.1.1 | 0.000018 |
S | 32 | F32Y | tTc | tAc | 1 | 1 | B.1.1 | 0.000018 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.1.101 | 0.01 |
S | 32 | F32del2 | TTc | --c | 1 | 1 | B.1.1.118 | 0.010204 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.1.157 | 0.000913 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.1.165 | 0.015385 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.1.176 | 0.000439 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.1.186 | 0.003436 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.1.218 | 0.007692 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.1.241 | 0.00207 |
S | 32 | F32L | Ttc | Ctc | 1 | 1 | B.1.1.25 | 0.000569 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.1.266 | 0.012195 |
S | 32 | F32L | ttC | ttA | 1 | 1 | B.1.1.28 | 0.000311 |
S | 32 | F32L | Ttc | Ctc | 1 | 1 | B.1.1.284 | 0.000107 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.1.294 | 0.001266 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.1.301 | 0.001179 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.1.306 | 0.000438 |
S | 32 | F32del | TTC | --- | 1 | 1 | B.1.1.306 | 0.000438 |
S | 32 | F32C | tTC | tGT | 1 | 1 | B.1.1.306 | 0.000438 |
S | 32 | F32del2 | tTC | t-- | 1 | 1 | B.1.1.311 | 0.000358 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.1.312 | 0.001912 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.1.316 | 0.000925 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.1.326 | 0.001761 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.1.347 | 0.018182 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.1.349 | 0.010309 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.1.370 | 0.012658 |
S | 32 | F32L | ttC | ttG | 1 | 1 | B.1.1.389 | 0.006061 |
S | 32 | F32L | Ttc | Ctc | 1 | 1 | B.1.1.409 | 0.002833 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.1.409 | 0.002833 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.1.417 | 0.002703 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.1.43 | 0.014925 |
S | 32 | F32L | Ttc | Ctc | 1 | 1 | B.1.1.432 | 0.001266 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.1.432 | 0.001266 |
S | 32 | F32del | TTC | --- | 1 | 1 | B.1.1.46 | 0.004367 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.1.464 | 0.001473 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.1.47 | 0.005348 |
S | 32 | F32V | Ttc | Gtc | 1 | 1 | B.1.1.50 | 0.000679 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.1.513 | 0.012346 |
S | 32 | F32L | ttC | ttA | 1 | 1 | B.1.1.517 | 0.006803 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.1.523 | 0.001563 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.1.524 | 0.020833 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.1.63 | 0.000386 |
S | 32 | F32L | ttC | ttA | 1 | 1 | B.1.1.70 | 0.000341 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.160.16 | 0.000929 |
S | 32 | F32S | tTc | tCc | 1 | 1 | B.1.160.23 | 0.004831 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.160.31 | 0.008065 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.160.33 | 0.004425 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.160.7 | 0.002079 |
S | 32 | F32V | Ttc | Gtc | 1 | 1 | B.1.177 | 0.000013 |
S | 32 | F32del1 | Ttc | -tc | 1 | 1 | B.1.177 | 0.000013 |
S | 32 | F32S | tTc | tCc | 1 | 1 | B.1.177 | 0.000013 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.177.10 | 0.000878 |
S | 32 | F32del | TTC | --- | 1 | 1 | B.1.177.17 | 0.000821 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.177.18 | 0.00116 |
S | 32 | F32L | Ttc | Ctc | 1 | 1 | B.1.177.21 | 0.000076 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.177.21 | 0.000076 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.177.26 | 0.006993 |
S | 32 | F32L | Ttc | Ctc | 1 | 1 | B.1.177.31 | 0.011494 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.177.32 | 0.00135 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.177.52 | 0.001757 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.177.56 | 0.000668 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.177.58 | 0.001332 |
S | 32 | F32del | TTC | --- | 1 | 1 | B.1.177.68 | 0.015152 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.177.69 | 0.001484 |
S | 32 | F32del | TTC | --- | 1 | 1 | B.1.177.7 | 0.000165 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.177.75 | 0.001041 |
S | 32 | F32X | tTC | tAA | 1 | 1 | B.1.177.78 | 0.009709 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.177.8 | 0.000752 |
S | 32 | F32del | TTC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
S | 32 | F32C | tTc | tGc | 1 | 1 | B.1.177.86 | 0.000183 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.177.9 | 0.001332 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.182 | 0.007246 |
S | 32 | F32del | TTC | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.210 | 0.002132 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.22 | 0.001318 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.221.2 | 0.004016 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.23 | 0.006061 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.237 | 0.004975 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.247 | 0.014925 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.268 | 0.010417 |
S | 32 | F32L | Ttc | Ctc | 1 | 1 | B.1.281 | 0.021739 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.305 | 0.002151 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.311 | 0.000275 |
S | 32 | F32S | tTc | tCc | 1 | 1 | B.1.326 | 0.007576 |
S | 32 | F32X | tTC | tAA | 1 | 1 | B.1.351.2 | 0.000303 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.351.2 | 0.000303 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.351.5 | 0.0006 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.356 | 0.001727 |
S | 32 | F32S | tTc | tCc | 1 | 1 | B.1.36.1 | 0.00114 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.36.16 | 0.001425 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.36.17 | 0.000494 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.36.22 | 0.001208 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.36.24 | 0.006173 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.36.28 | 0.005747 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.36.31 | 0.001751 |
S | 32 | F32del2 | tTC | t-- | 1 | 1 | B.1.36.8 | 0.001 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.362 | 0.001541 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.398 | 0.002976 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.425 | 0.002994 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.428 | 0.00102 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.428.2 | 0.033333 |
S | 32 | F32S | tTc | tCc | 1 | 1 | B.1.429 | 0.000024 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.459 | 0.004082 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.462 | 0.007246 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.468 | 0.005714 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.469 | 0.00361 |
S | 32 | F32L | Ttc | Ctc | 1 | 1 | B.1.470 | 0.001404 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.478 | 0.011765 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.497 | 0.000315 |
S | 32 | F32L | ttC | ttG | 1 | 1 | B.1.499 | 0.00105 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.499 | 0.00105 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.515 | 0.014493 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.521 | 0.004975 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.524 | 0.001406 |
S | 32 | F32del | TTC | --- | 1 | 1 | B.1.524 | 0.001406 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.530 | 0.007143 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.533 | 0.009615 |
S | 32 | F32L | Ttc | Ctc | 1 | 1 | B.1.533 | 0.009615 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.534 | 0.0125 |
S | 32 | F32L | Ttc | Ctc | 1 | 1 | B.1.548 | 0.035714 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.560 | 0.00463 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.575.2 | 0.004808 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.588 | 0.00091 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.589 | 0.007576 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.595.4 | 0.007299 |
S | 32 | F32L | Ttc | Ctc | 1 | 1 | B.1.597 | 0.00463 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.600 | 0.005848 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.604 | 0.017241 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.605 | 0.005952 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.612 | 0.002653 |
S | 32 | F32del1 | ttC | tt- | 1 | 1 | B.1.612 | 0.002653 |
S | 32 | F32V | Ttc | Gtc | 1 | 1 | B.1.617.1 | 0.000129 |
S | 32 | F32S | tTc | tCc | 1 | 1 | B.1.617.2 | 0.000004 |
S | 32 | F32V | Ttc | Gtc | 1 | 1 | B.1.617.2 | 0.000004 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.619 | 0.000871 |
S | 32 | F32del | TTC | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 32 | F32L | Ttc | Ctc | 1 | 1 | B.1.621 | 0.000089 |
S | 32 | F32del | TTC | --- | 1 | 1 | B.1.621 | 0.000089 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.627 | 0.00202 |
S | 32 | F32L | ttC | ttA | 1 | 1 | B.1.637 | 0.000073 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.78 | 0.008547 |
S | 32 | F32V | Ttc | Gtc | 1 | 1 | B.1.93 | 0.000934 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.1.94 | 0.027027 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.10 | 0.008264 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.28 | 0.003279 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.3 | 0.000831 |
S | 32 | F32L | ttC | ttG | 1 | 1 | B.40 | 0.000364 |
S | 32 | F32L | Ttc | Ctc | 1 | 1 | B.55 | 0.00295 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.6.1 | 0.026316 |
S | 32 | F32L | ttC | ttA | 1 | 1 | B.6.6 | 0.000889 |
S | 32 | F32F | ttC | ttT | 1 | 1 | B.6.6 | 0.000889 |
S | 32 | F32S | tTc | tCc | 1 | 1 | C.1 | 0.002392 |
S | 32 | F32F | ttC | ttT | 1 | 1 | C.16 | 0.00106 |
S | 32 | F32F | ttC | ttT | 1 | 1 | C.36.3 | 0.000567 |
S | 32 | F32L | ttC | ttG | 1 | 1 | D.2 | 0.000075 |
S | 32 | F32F | ttC | ttT | 1 | 1 | K.1 | 0.02381 |
S | 32 | F32F | ttC | ttT | 1 | 1 | L.2 | 0.011364 |
S | 32 | F32V | Ttc | Gtc | 1 | 1 | P.1 | 0.000016 |
S | 32 | F32E | TTC | GAA | 1 | 1 | P.1 | 0.000016 |
S | 32 | F32del | TTC | --- | 1 | 1 | P.1 | 0.000016 |
S | 32 | F32L | ttC | ttA | 1 | 1 | P.1.1 | 0.000318 |
S | 32 | F32F | ttC | ttT | 1 | 1 | P.1.1 | 0.000318 |
S | 32 | F32L | Ttc | Ctc | 1 | 1 | P.1.14 | 0.000048 |
S | 32 | F32I | Ttc | Atc | 1 | 1 | P.1.14 | 0.000048 |
S | 32 | F32F | ttC | ttT | 1 | 1 | P.1.17 | 0.000162 |
S | 32 | F32M | TtC | AtG | 1 | 1 | P.1.17 | 0.000162 |
S | 32 | F32F | ttC | ttT | 1 | 1 | P.1.8 | 0.004785 |
S | 32 | F32Y | tTc | tAc | 1 | 1 | P.2 | 0.000187 |
S | 32 | F32del | TTC | --- | 1 | 1 | Q.1 | 0.000126 |
S | 32 | F32F | ttC | ttT | 1 | 1 | Q.3 | 0.000145 |
S | 32 | F32S | tTc | tCc | 1 | 1 | Q.4 | 0.000455 |
S | 32 | F32L | ttC | ttG | 1 | 1 | Q.8 | 0.000165 |
S | 32 | F32L | Ttc | Ctc | 1 | 1 | R.1 | 0.00009 |
S | 32 | F32F | ttC | ttT | 1 | 1 | W.3 | 0.005263 |
S | 32 | F32F | ttC | ttT | 1 | 1 | Z.1 | 0.00289 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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