CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 307

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S307T307InonsynaCtaTt37293729122481-22483
S307T307TsynacTacC4103650.89024422481-22483
S307T307TsynacTacA410300.073170722481-22483
S307T307TsynacTacG410150.036585422481-22483
S307T307AnonsynActGct135135122481-22483
S307T307SnonsynaCtaGt122870.71311522481-22483
S307T307SnonsynActTct122320.26229522481-22483
S307T307SnonsynAcTTcG12220.016393422481-22483
S307T307SnonsynAcTTcC12210.0081967222481-22483
S307T307deldelACT---101101122481-22483
S307T307NnonsynaCtaAt5858122481-22483
S307T307DnonsynACtGAt1515122481-22483
S307T307del2delACt--t55122481-22483
S307T307del1delACT-NN410.2522481-22483
S307T307del1delaCta-t410.2522481-22483
S307T307del1delAct-ct410.2522481-22483
S307T307del1delacTac-410.2522481-22483
S307T307PnonsynActCct33122481-22483
S307T307VnonsynACtGTt33122481-22483
S307T307LnonsynACtCTt22122481-22483
S307T307WnonsynACTTGG11122481-22483
S307T307KnonsynaCTaAG11122481-22483
S307T307QnonsynACTCAG11122481-22483
S307T307HnonsynACtCAt11122481-22483
S307T307YnonsynACtTAt11122481-22483

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S307T307IaCtaTt37293729All0.000713
S307T307IaCtaTt15781578B.1.1.70.001413
S307T307IaCtaTt466466AY.40.000725
S307T307TacTacC365410All0.00007
S307T307TacTacA30410All0.000006
S307T307TacTacG15410All0.000003
S307T307IaCtaTt266266B.1.20.002342
S307T307TacTacC163171B.1.1.70.000146
S307T307TacTacG7171B.1.1.70.000006
S307T307TacTacA1171B.1.1.70.000001
S307T307AActGct135135All0.000026
S307T307SaCtaGt87122All0.000017
S307T307SActTct32122All0.000006
S307T307SAcTTcG2122All0
S307T307SAcTTcC1122All0
S307T307IaCtaTt102102AY.440.000621
S307T307delACT---101101All0.000019
S307T307TacTacC9090AY.460.009367
S307T307IaCtaTt8888B.1.4020.862745
S307T307IaCtaTt8787AY.430.000385
S307T307IaCtaTt8787B.10.000797
S307T307IaCtaTt7878C.110.829787
S307T307SaCtaGt7070B.1.1.70.000063
S307T307IaCtaTt6969B.1.617.20.00026
S307T307IaCtaTt6363B.1.258.170.00655
S307T307IaCtaTt6262AY.1030.000385
S307T307NaCtaAt5858All0.000011
S307T307IaCtaTt4040AY.250.000241
S307T307IaCtaTt3434AY.30.000338
S307T307AActGct3434AY.40.000053
S307T307IaCtaTt3333AY.50.000681
S307T307AActGct3232AY.1200.00119
S307T307IaCtaTt3030B.1.10.000544
S307T307delACT---2929B.1.1.70.000026
S307T307IaCtaTt2727AY.260.000764
S307T307IaCtaTt2525AY.98.10.001211
S307T307IaCtaTt2525B.1.1770.000329
S307T307IaCtaTt2323AY.1180.001441
S307T307IaCtaTt2222AY.290.000347
S307T307TacTacC2122AY.40.000033
S307T307TacTacG122AY.40.000002
S307T307AActGct2222B.1.1.70.00002
S307T307IaCtaTt2121AY.470.000653
S307T307IaCtaTt1818B.1.6310.060606
S307T307SActTct1516B.1.10.000272
S307T307SAcTTcC116B.1.10.000018
S307T307DACtGAt1515All0.000003
S307T307IaCtaTt1515AY.200.000583
S307T307IaCtaTt1515B.1.4290.000353
S307T307TacTacC1115B.1.617.20.000041
S307T307TacTacA215B.1.617.20.000008
S307T307TacTacG215B.1.617.20.000008
S307T307IaCtaTt1414B.1.1.2220.002856
S307T307NaCtaAt1414B.1.1.70.000013
S307T307IaCtaTt1313AY.1020.000345
S307T307delACT---1313B.10.000119
S307T307IaCtaTt1212AY.390.000297
S307T307TacTacC912B.10.000082
S307T307TacTacG212B.10.000018
S307T307TacTacA112B.10.000009
S307T307IaCtaTt1111AY.1010.005395
S307T307IaCtaTt1111AY.1190.000388
S307T307IaCtaTt1111B0.001406
S307T307IaCtaTt1111B.1.2430.000765
S307T307IaCtaTt1111P.10.000173
S307T307NaCtaAt1010AY.30.000099
S307T307IaCtaTt1010B.1.617.10.00129
S307T307IaCtaTt99AY.1100.001014
S307T307IaCtaTt99B.1.177.860.001651
S307T307TacTacC99P.10.000142
S307T307IaCtaTt88AY.1000.000368
S307T307IaCtaTt88AY.3.10.000682
S307T307IaCtaTt88AY.4.20.000174
S307T307IaCtaTt88B.1.2210.000568
S307T307TacTacA88B.1.5610.003176
S307T307TacTacC77AY.30.00007
S307T307IaCtaTt77AY.420.000282
S307T307TacTacC77AY.430.000031
S307T307IaCtaTt77AY.980.000553
S307T307IaCtaTt77B.1.1.3690.003124
S307T307delACT---77B.1.3510.000208
S307T307IaCtaTt77P.1.100.001886
S307T307IaCtaTt66AY.460.000624
S307T307IaCtaTt66AY.680.001642
S307T307NaCtaAt66B.1.1.1940.029703
S307T307IaCtaTt66B.1.1.2840.000644
S307T307IaCtaTt66B.1.1.5190.000238
S307T307IaCtaTt66B.1.1600.000187
S307T307IaCtaTt66B.1.177.100.005268
S307T307IaCtaTt66D.20.00045
S307T307del2ACt--t55All0.000001
S307T307DACtGAt55AY.430.000022
S307T307IaCtaTt55AY.450.000608
S307T307IaCtaTt55B.1.1.3260.008803
S307T307IaCtaTt55B.1.2340.00066
S307T307IaCtaTt55B.1.3510.000149
S307T307delACT---55B.1.5250.000566
S307T307IaCtaTt55B.1.5260.000118
S307T307IaCtaTt55B.1.5480.178571
S307T307IaCtaTt55C.370.00058
S307T307IaCtaTt55P.1.10.001588
S307T307del1Act-ct14All0
S307T307del1aCta-t14All0
S307T307del1acTac-14All0
S307T307del1ACT-NN14All0
S307T307TacTacG24AY.1030.000012
S307T307TacTacC24AY.1030.000012
S307T307IaCtaTt44AY.1130.00057
S307T307IaCtaTt44AY.230.000279
S307T307SActTct34AY.30.00003
S307T307SAcTTcG14AY.30.00001
S307T307IaCtaTt44AY.330.000267
S307T307IaCtaTt44AY.380.001997
S307T307delACT---44AY.430.000018
S307T307TacTacC44AY.440.000024
S307T307AActGct44AY.90.00027
S307T307IaCtaTt44AY.9.20.000147
S307T307IaCtaTt44AY.99.20.000369
S307T307AActGct44B.10.000037
S307T307SaCtaGt34B.10.000027
S307T307SActTct14B.10.000009
S307T307IaCtaTt44B.1.177.770.002905
S307T307IaCtaTt44B.1.3110.001098
S307T307IaCtaTt44B.1.360.000584
S307T307NaCtaAt44B.1.5110.137931
S307T307IaCtaTt44B.1.5950.001044
S307T307IaCtaTt44B.1.5960.000349
S307T307SaCtaGt44B.1.617.20.000015
S307T307delACT---44P.10.000063
S307T307AActGct44P.10.000063
S307T307IaCtaTt44P.1.70.001277
S307T307AActGct44P.30.00638
S307T307VACtGTt33All0.000001
S307T307PActCct33All0.000001
S307T307TacTacA33AY.1210.000406
S307T307NaCtaAt33AY.1210.000406
S307T307TacTacC33AY.260.000085
S307T307delACT---33AY.30.00003
S307T307SaCtaGt33AY.40.000005
S307T307delACT---33AY.40.000005
S307T307NaCtaAt33AY.430.000013
S307T307IaCtaTt33AY.60.000123
S307T307NaCtaAt33AY.750.000168
S307T307IaCtaTt33AY.90.000203
S307T307IaCtaTt33B.1.1.2140.000166
S307T307IaCtaTt33B.1.177.210.000229
S307T307AActGct33B.1.20.000026
S307T307TacTacC33B.1.20.000026
S307T307TacTacC33B.1.2580.0002
S307T307IaCtaTt33B.1.2580.0002
S307T307AActGct33B.1.3200.003736
S307T307delACT---33B.1.351.20.000908
S307T307IaCtaTt33B.1.5700.008824
S307T307IaCtaTt33B.1.6370.000219
S307T307PActCct220.111111
S307T307delACT---220.111111
S307T307VACtGTt220.111111
S307T307AActGct220.111111
S307T307IaCtaTt220.111111
S307T307LACtCTt22All0
S307T307IaCtaTt22AY.1210.000271
S307T307IaCtaTt22AY.130.000322
S307T307TacTacC22AY.200.000078
S307T307delACT---22AY.250.000012
S307T307NaCtaAt22AY.250.000012
S307T307IaCtaTt22AY.320.001065
S307T307IaCtaTt22AY.360.000296
S307T307TacTacC22AY.390.000049
S307T307TacTacA22AY.39.10.000079
S307T307IaCtaTt22AY.4.50.000215
S307T307AActGct22AY.430.000009
S307T307del2ACt--t22AY.430.000009
S307T307IaCtaTt22AY.580.001815
S307T307SaCtaGt12AY.610.000105
S307T307SActTct12AY.610.000105
S307T307TacTacC22AY.730.001331
S307T307TacTacC22AY.750.000112
S307T307SaCtaGt22AY.790.002421
S307T307TacTacA22AY.840.000875
S307T307IaCtaTt22AY.940.000885
S307T307NaCtaAt22B.10.000018
S307T307AActGct22B.1.10.000036
S307T307IaCtaTt22B.1.1.1810.009091
S307T307IaCtaTt22B.1.1.3060.000877
S307T307IaCtaTt22B.1.1.4340.000697
S307T307SActTct22B.1.1.700.000682
S307T307AActGct22B.1.1600.000062
S307T307AActGct22B.1.1770.000026
S307T307SaCtaGt22B.1.1770.000026
S307T307IaCtaTt22B.1.177.150.001262
S307T307IaCtaTt22B.1.177.600.000437
S307T307delACT---22B.1.20.000018
S307T307SActTct22B.1.20.000018
S307T307del1Act-ct12B.1.20.000009
S307T307del1aCta-t12B.1.20.000009
S307T307IaCtaTt22B.1.258.110.000793
S307T307TacTacC22B.1.258.170.000208
S307T307IaCtaTt22B.1.2790.001027
S307T307TacTacC22B.1.3510.000059
S307T307IaCtaTt22B.1.4240.016129
S307T307TacTacA12B.1.4270.00005
S307T307TacTacC12B.1.4270.00005
S307T307IaCtaTt22B.1.438.10.000215
S307T307IaCtaTt22B.1.4700.002809
S307T307IaCtaTt22B.1.5240.002813
S307T307IaCtaTt22B.1.5650.001621
S307T307delACT---22B.1.5760.001813
S307T307NaCtaAt22B.1.617.20.000008
S307T307AActGct22B.1.617.20.000008
S307T307delACT---22B.1.617.20.000008
S307T307IaCtaTt22C.180.005181
S307T307IaCtaTt22C.36.30.001134
S307T307TacTacC22D.20.00015
S307T307AActGct22D.20.00015
S307T307IaCtaTt22P.20.000373
S307T307IaCtaTt22Q.30.00029
S307T307IaCtaTt22Q.80.00033
S307T307delACT---11A0.000387
S307T307IaCtaTt11A.2.50.000499
S307T307delACT---11A.2.50.000499
S307T307IaCtaTt11A.2.5.30.010309
S307T307YACtTAt11All0
S307T307QACTCAG11All0
S307T307HACtCAt11All0
S307T307KaCTaAG11All0
S307T307WACTTGG11All0
S307T307SActTct11AT.10.005128
S307T307TacTacC11AU.20.002421
S307T307AActGct11AY.1000.000046
S307T307delACT---11AY.1010.00049
S307T307TacTacA11AY.1020.000027
S307T307NaCtaAt11AY.1020.000027
S307T307AActGct11AY.1020.000027
S307T307delACT---11AY.1080.001103
S307T307IaCtaTt11AY.1090.00074
S307T307DACtGAt11AY.1100.000113
S307T307TacTacC11AY.1100.000113
S307T307DACtGAt11AY.1130.000142
S307T307IaCtaTt11AY.1160.000287
S307T307TacTacC11AY.1180.000063
S307T307NaCtaAt11AY.1190.000035
S307T307IaCtaTt11AY.1200.000037
S307T307delACT---11AY.1200.000037
S307T307IaCtaTt11AY.160.00038
S307T307TacTacA11AY.16.10.00047
S307T307AActGct11AY.230.00007
S307T307AActGct11AY.23.10.000417
S307T307TacTacC11AY.250.000006
S307T307del2ACt--t11AY.250.000006
S307T307delACT---11AY.260.000028
S307T307IaCtaTt11AY.29.10.000221
S307T307WACTTGG11AY.30.00001
S307T307AActGct11AY.30.00001
S307T307DACtGAt11AY.30.00001
S307T307NaCtaAt11AY.330.000067
S307T307IaCtaTt11AY.340.000097
S307T307IaCtaTt11AY.39.10.00004
S307T307NaCtaAt11AY.40.000002
S307T307DACtGAt11AY.420.00004
S307T307VACtGTt11AY.430.000004
S307T307DACtGAt11AY.440.000006
S307T307SActTct11AY.440.000006
S307T307TacTacC11AY.450.000122
S307T307IaCtaTt11AY.46.40.000165
S307T307IaCtaTt11AY.46.50.000198
S307T307SAcTTcG11AY.46.60.000072
S307T307TacTacC11AY.46.60.000072
S307T307NaCtaAt11AY.46.60.000072
S307T307IaCtaTt11AY.46.60.000072
S307T307delACT---11AY.46.60.000072
S307T307SActTct11AY.470.000031
S307T307TacTacC11AY.490.003195
S307T307IaCtaTt11AY.5.30.000337
S307T307IaCtaTt11AY.540.000095
S307T307IaCtaTt11AY.550.000917
S307T307SActTct11AY.590.00053
S307T307delACT---11AY.600.000938
S307T307delACT---11AY.610.000105
S307T307IaCtaTt11AY.610.000105
S307T307DACtGAt11AY.670.000464
S307T307AActGct11AY.670.000464
S307T307IaCtaTt11AY.7.10.000113
S307T307SaCtaGt11AY.750.000056
S307T307TacTacC11AY.75.10.00018
S307T307IaCtaTt11AY.75.10.00018
S307T307IaCtaTt11AY.80.000606
S307T307del2ACt--t11AY.840.000437
S307T307IaCtaTt11AY.860.00083
S307T307delACT---11AY.90.000068
S307T307IaCtaTt11AY.9.10.000084
S307T307TacTacC11AY.9.10.000084
S307T307DACtGAt11AY.9.20.000037
S307T307NaCtaAt11AY.920.000287
S307T307delACT---11AY.98.10.000048
S307T307DACtGAt11AY.990.001049
S307T307delACT---11AY.990.001049
S307T307DACtGAt11B.10.000009
S307T307del1acTac-11B.10.000009
S307T307delACT---11B.1.10.000018
S307T307LACtCTt11B.1.10.000018
S307T307IaCtaTt11B.1.1.10.000327
S307T307TacTacG11B.1.1.1180.010204
S307T307IaCtaTt11B.1.1.1530.001095
S307T307IaCtaTt11B.1.1.1760.000439
S307T307IaCtaTt11B.1.1.1890.001513
S307T307IaCtaTt11B.1.1.2300.009174
S307T307IaCtaTt11B.1.1.280.000311
S307T307delACT---11B.1.1.3010.001179
S307T307del2ACt--t11B.1.1.3060.000438
S307T307IaCtaTt11B.1.1.330.000421
S307T307IaCtaTt11B.1.1.3620.005618
S307T307IaCtaTt11B.1.1.3700.012658
S307T307IaCtaTt11B.1.1.4320.001266
S307T307AActGct11B.1.1.4860.001577
S307T307SActTct11B.1.1.5190.00004
S307T307IaCtaTt11B.1.1.670.004566
S307T307YACtTAt11B.1.1.70.000001
S307T307TacTacA11B.1.1.700.000341
S307T307IaCtaTt11B.1.1.700.000341
S307T307TacTacA11B.1.110.30.000718
S307T307IaCtaTt11B.1.1640.014925
S307T307TacTacA11B.1.1770.000013
S307T307NaCtaAt11B.1.1770.000013
S307T307delACT---11B.1.1770.000013
S307T307IaCtaTt11B.1.177.350.000691
S307T307TacTacA11B.1.177.440.000519
S307T307AActGct11B.1.177.440.000519
S307T307IaCtaTt11B.1.177.540.000606
S307T307IaCtaTt11B.1.177.70.000165
S307T307IaCtaTt11B.1.177.80.000752
S307T307IaCtaTt11B.1.177.830.001481
S307T307IaCtaTt11B.1.177.90.001332
S307T307IaCtaTt11B.1.1890.004292
S307T307NaCtaAt11B.1.2340.000132
S307T307IaCtaTt11B.1.2390.001221
S307T307TacTacC11B.1.2410.000812
S307T307NaCtaAt11B.1.2580.000067
S307T307AActGct11B.1.258.110.000396
S307T307IaCtaTt11B.1.258.210.007752
S307T307IaCtaTt11B.1.2840.013158
S307T307TacTacC11B.1.3110.000275
S307T307IaCtaTt11B.1.3200.001245
S307T307IaCtaTt11B.1.3240.001605
S307T307IaCtaTt11B.1.3460.001311
S307T307TacTacC11B.1.36.290.000517
S307T307IaCtaTt11B.1.36.340.021277
S307T307IaCtaTt11B.1.36.360.000602
S307T307IaCtaTt11B.1.36.380.001642
S307T307IaCtaTt11B.1.36.390.002217
S307T307IaCtaTt11B.1.36.80.001
S307T307IaCtaTt11B.1.3600.012658
S307T307TacTacA11B.1.3690.000285
S307T307TacTacC11B.1.3980.002976
S307T307TacTacA11B.1.4000.000429
S307T307IaCtaTt11B.1.4090.000781
S307T307IaCtaTt11B.1.4130.004255
S307T307delACT---11B.1.416.10.001563
S307T307AActGct11B.1.4270.00005
S307T307IaCtaTt11B.1.4270.00005
S307T307SActTct11B.1.4290.000024
S307T307TacTacA11B.1.4290.000024
S307T307IaCtaTt11B.1.4680.005714
S307T307IaCtaTt11B.1.5170.000427
S307T307IaCtaTt11B.1.5230.002451
S307T307IaCtaTt11B.1.5250.000113
S307T307TacTacC11B.1.5260.000024
S307T307SActTct11B.1.5460.003704
S307T307AActGct11B.1.5640.000426
S307T307IaCtaTt11B.1.5740.002151
S307T307IaCtaTt11B.1.5760.000907
S307T307PActCct11B.1.5820.000491
S307T307IaCtaTt11B.1.595.40.007299
S307T307TacTacC11B.1.5960.000087
S307T307IaCtaTt11B.1.6000.005848
S307T307TacTacC11B.1.617.10.000129
S307T307delACT---11B.1.617.10.000129
S307T307KaCTaAG11B.1.617.20.000004
S307T307HACtCAt11B.1.617.20.000004
S307T307QACTCAG11B.1.617.20.000004
S307T307DACtGAt11B.1.617.20.000004
S307T307delACT---11B.1.6200.000946
S307T307IaCtaTt11B.1.6210.000089
S307T307IaCtaTt11B.1.621.10.000506
S307T307delACT---11B.1.6300.005236
S307T307TacTacC11B.6.60.000889
S307T307delACT---11C.1.20.004255
S307T307IaCtaTt11C.160.00106
S307T307IaCtaTt11C.350.000774
S307T307SActTct11D.20.000075
S307T307IaCtaTt11N.40.004255
S307T307LACtCTt11P.10.000016
S307T307SaCtaGt11P.1.140.000048
S307T307TacTacC11P.1.140.000048
S307T307del1ACT-NN11P.1.150.000232
S307T307IaCtaTt11P.1.150.000232
S307T307IaCtaTt11P.1.20.001156
S307T307IaCtaTt11Q.10.000126
S307T307TacTacA11Q.60.006623