CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 307

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	307	T307I		nonsyn	aCt	aTt	3729	3729	1	22481-22483
S	307	T307T		syn	acT	acC	410	365	0.890244	22481-22483
S	307	T307T		syn	acT	acA	410	30	0.0731707	22481-22483
S	307	T307T		syn	acT	acG	410	15	0.0365854	22481-22483
S	307	T307A		nonsyn	Act	Gct	135	135	1	22481-22483
S	307	T307S		nonsyn	aCt	aGt	122	87	0.713115	22481-22483
S	307	T307S		nonsyn	Act	Tct	122	32	0.262295	22481-22483
S	307	T307S		nonsyn	AcT	TcG	122	2	0.0163934	22481-22483
S	307	T307S		nonsyn	AcT	TcC	122	1	0.00819672	22481-22483
S	307	T307del		del	ACT	---	101	101	1	22481-22483
S	307	T307N		nonsyn	aCt	aAt	58	58	1	22481-22483
S	307	T307D		nonsyn	ACt	GAt	15	15	1	22481-22483
S	307	T307del2		del	ACt	--t	5	5	1	22481-22483
S	307	T307del1		del	ACT	-NN	4	1	0.25	22481-22483
S	307	T307del1		del	aCt	a-t	4	1	0.25	22481-22483
S	307	T307del1		del	Act	-ct	4	1	0.25	22481-22483
S	307	T307del1		del	acT	ac-	4	1	0.25	22481-22483
S	307	T307P		nonsyn	Act	Cct	3	3	1	22481-22483
S	307	T307V		nonsyn	ACt	GTt	3	3	1	22481-22483
S	307	T307L		nonsyn	ACt	CTt	2	2	1	22481-22483
S	307	T307W		nonsyn	ACT	TGG	1	1	1	22481-22483
S	307	T307K		nonsyn	aCT	aAG	1	1	1	22481-22483
S	307	T307Q		nonsyn	ACT	CAG	1	1	1	22481-22483
S	307	T307H		nonsyn	ACt	CAt	1	1	1	22481-22483
S	307	T307Y		nonsyn	ACt	TAt	1	1	1	22481-22483

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	307	T307I	aCt	aTt	3729	3729	All	0.000713
S	307	T307I	aCt	aTt	1578	1578	B.1.1.7	0.001413
S	307	T307I	aCt	aTt	466	466	AY.4	0.000725
S	307	T307T	acT	acC	365	410	All	0.00007
S	307	T307T	acT	acA	30	410	All	0.000006
S	307	T307T	acT	acG	15	410	All	0.000003
S	307	T307I	aCt	aTt	266	266	B.1.2	0.002342
S	307	T307T	acT	acC	163	171	B.1.1.7	0.000146
S	307	T307T	acT	acG	7	171	B.1.1.7	0.000006
S	307	T307T	acT	acA	1	171	B.1.1.7	0.000001
S	307	T307A	Act	Gct	135	135	All	0.000026
S	307	T307S	aCt	aGt	87	122	All	0.000017
S	307	T307S	Act	Tct	32	122	All	0.000006
S	307	T307S	AcT	TcG	2	122	All	0
S	307	T307S	AcT	TcC	1	122	All	0
S	307	T307I	aCt	aTt	102	102	AY.44	0.000621
S	307	T307del	ACT	---	101	101	All	0.000019
S	307	T307T	acT	acC	90	90	AY.46	0.009367
S	307	T307I	aCt	aTt	88	88	B.1.402	0.862745
S	307	T307I	aCt	aTt	87	87	AY.43	0.000385
S	307	T307I	aCt	aTt	87	87	B.1	0.000797
S	307	T307I	aCt	aTt	78	78	C.11	0.829787
S	307	T307S	aCt	aGt	70	70	B.1.1.7	0.000063
S	307	T307I	aCt	aTt	69	69	B.1.617.2	0.00026
S	307	T307I	aCt	aTt	63	63	B.1.258.17	0.00655
S	307	T307I	aCt	aTt	62	62	AY.103	0.000385
S	307	T307N	aCt	aAt	58	58	All	0.000011
S	307	T307I	aCt	aTt	40	40	AY.25	0.000241
S	307	T307I	aCt	aTt	34	34	AY.3	0.000338
S	307	T307A	Act	Gct	34	34	AY.4	0.000053
S	307	T307I	aCt	aTt	33	33	AY.5	0.000681
S	307	T307A	Act	Gct	32	32	AY.120	0.00119
S	307	T307I	aCt	aTt	30	30	B.1.1	0.000544
S	307	T307del	ACT	---	29	29	B.1.1.7	0.000026
S	307	T307I	aCt	aTt	27	27	AY.26	0.000764
S	307	T307I	aCt	aTt	25	25	AY.98.1	0.001211
S	307	T307I	aCt	aTt	25	25	B.1.177	0.000329
S	307	T307I	aCt	aTt	23	23	AY.118	0.001441
S	307	T307I	aCt	aTt	22	22	AY.29	0.000347
S	307	T307T	acT	acC	21	22	AY.4	0.000033
S	307	T307T	acT	acG	1	22	AY.4	0.000002
S	307	T307A	Act	Gct	22	22	B.1.1.7	0.00002
S	307	T307I	aCt	aTt	21	21	AY.47	0.000653
S	307	T307I	aCt	aTt	18	18	B.1.631	0.060606
S	307	T307S	Act	Tct	15	16	B.1.1	0.000272
S	307	T307S	AcT	TcC	1	16	B.1.1	0.000018
S	307	T307D	ACt	GAt	15	15	All	0.000003
S	307	T307I	aCt	aTt	15	15	AY.20	0.000583
S	307	T307I	aCt	aTt	15	15	B.1.429	0.000353
S	307	T307T	acT	acC	11	15	B.1.617.2	0.000041
S	307	T307T	acT	acA	2	15	B.1.617.2	0.000008
S	307	T307T	acT	acG	2	15	B.1.617.2	0.000008
S	307	T307I	aCt	aTt	14	14	B.1.1.222	0.002856
S	307	T307N	aCt	aAt	14	14	B.1.1.7	0.000013
S	307	T307I	aCt	aTt	13	13	AY.102	0.000345
S	307	T307del	ACT	---	13	13	B.1	0.000119
S	307	T307I	aCt	aTt	12	12	AY.39	0.000297
S	307	T307T	acT	acC	9	12	B.1	0.000082
S	307	T307T	acT	acG	2	12	B.1	0.000018
S	307	T307T	acT	acA	1	12	B.1	0.000009
S	307	T307I	aCt	aTt	11	11	AY.101	0.005395
S	307	T307I	aCt	aTt	11	11	AY.119	0.000388
S	307	T307I	aCt	aTt	11	11	B	0.001406
S	307	T307I	aCt	aTt	11	11	B.1.243	0.000765
S	307	T307I	aCt	aTt	11	11	P.1	0.000173
S	307	T307N	aCt	aAt	10	10	AY.3	0.000099
S	307	T307I	aCt	aTt	10	10	B.1.617.1	0.00129
S	307	T307I	aCt	aTt	9	9	AY.110	0.001014
S	307	T307I	aCt	aTt	9	9	B.1.177.86	0.001651
S	307	T307T	acT	acC	9	9	P.1	0.000142
S	307	T307I	aCt	aTt	8	8	AY.100	0.000368
S	307	T307I	aCt	aTt	8	8	AY.3.1	0.000682
S	307	T307I	aCt	aTt	8	8	AY.4.2	0.000174
S	307	T307I	aCt	aTt	8	8	B.1.221	0.000568
S	307	T307T	acT	acA	8	8	B.1.561	0.003176
S	307	T307T	acT	acC	7	7	AY.3	0.00007
S	307	T307I	aCt	aTt	7	7	AY.42	0.000282
S	307	T307T	acT	acC	7	7	AY.43	0.000031
S	307	T307I	aCt	aTt	7	7	AY.98	0.000553
S	307	T307I	aCt	aTt	7	7	B.1.1.369	0.003124
S	307	T307del	ACT	---	7	7	B.1.351	0.000208
S	307	T307I	aCt	aTt	7	7	P.1.10	0.001886
S	307	T307I	aCt	aTt	6	6	AY.46	0.000624
S	307	T307I	aCt	aTt	6	6	AY.68	0.001642
S	307	T307N	aCt	aAt	6	6	B.1.1.194	0.029703
S	307	T307I	aCt	aTt	6	6	B.1.1.284	0.000644
S	307	T307I	aCt	aTt	6	6	B.1.1.519	0.000238
S	307	T307I	aCt	aTt	6	6	B.1.160	0.000187
S	307	T307I	aCt	aTt	6	6	B.1.177.10	0.005268
S	307	T307I	aCt	aTt	6	6	D.2	0.00045
S	307	T307del2	ACt	--t	5	5	All	0.000001
S	307	T307D	ACt	GAt	5	5	AY.43	0.000022
S	307	T307I	aCt	aTt	5	5	AY.45	0.000608
S	307	T307I	aCt	aTt	5	5	B.1.1.326	0.008803
S	307	T307I	aCt	aTt	5	5	B.1.234	0.00066
S	307	T307I	aCt	aTt	5	5	B.1.351	0.000149
S	307	T307del	ACT	---	5	5	B.1.525	0.000566
S	307	T307I	aCt	aTt	5	5	B.1.526	0.000118
S	307	T307I	aCt	aTt	5	5	B.1.548	0.178571
S	307	T307I	aCt	aTt	5	5	C.37	0.00058
S	307	T307I	aCt	aTt	5	5	P.1.1	0.001588
S	307	T307del1	Act	-ct	1	4	All	0
S	307	T307del1	aCt	a-t	1	4	All	0
S	307	T307del1	acT	ac-	1	4	All	0
S	307	T307del1	ACT	-NN	1	4	All	0
S	307	T307T	acT	acG	2	4	AY.103	0.000012
S	307	T307T	acT	acC	2	4	AY.103	0.000012
S	307	T307I	aCt	aTt	4	4	AY.113	0.00057
S	307	T307I	aCt	aTt	4	4	AY.23	0.000279
S	307	T307S	Act	Tct	3	4	AY.3	0.00003
S	307	T307S	AcT	TcG	1	4	AY.3	0.00001
S	307	T307I	aCt	aTt	4	4	AY.33	0.000267
S	307	T307I	aCt	aTt	4	4	AY.38	0.001997
S	307	T307del	ACT	---	4	4	AY.43	0.000018
S	307	T307T	acT	acC	4	4	AY.44	0.000024
S	307	T307A	Act	Gct	4	4	AY.9	0.00027
S	307	T307I	aCt	aTt	4	4	AY.9.2	0.000147
S	307	T307I	aCt	aTt	4	4	AY.99.2	0.000369
S	307	T307A	Act	Gct	4	4	B.1	0.000037
S	307	T307S	aCt	aGt	3	4	B.1	0.000027
S	307	T307S	Act	Tct	1	4	B.1	0.000009
S	307	T307I	aCt	aTt	4	4	B.1.177.77	0.002905
S	307	T307I	aCt	aTt	4	4	B.1.311	0.001098
S	307	T307I	aCt	aTt	4	4	B.1.36	0.000584
S	307	T307N	aCt	aAt	4	4	B.1.511	0.137931
S	307	T307I	aCt	aTt	4	4	B.1.595	0.001044
S	307	T307I	aCt	aTt	4	4	B.1.596	0.000349
S	307	T307S	aCt	aGt	4	4	B.1.617.2	0.000015
S	307	T307del	ACT	---	4	4	P.1	0.000063
S	307	T307A	Act	Gct	4	4	P.1	0.000063
S	307	T307I	aCt	aTt	4	4	P.1.7	0.001277
S	307	T307A	Act	Gct	4	4	P.3	0.00638
S	307	T307V	ACt	GTt	3	3	All	0.000001
S	307	T307P	Act	Cct	3	3	All	0.000001
S	307	T307T	acT	acA	3	3	AY.121	0.000406
S	307	T307N	aCt	aAt	3	3	AY.121	0.000406
S	307	T307T	acT	acC	3	3	AY.26	0.000085
S	307	T307del	ACT	---	3	3	AY.3	0.00003
S	307	T307S	aCt	aGt	3	3	AY.4	0.000005
S	307	T307del	ACT	---	3	3	AY.4	0.000005
S	307	T307N	aCt	aAt	3	3	AY.43	0.000013
S	307	T307I	aCt	aTt	3	3	AY.6	0.000123
S	307	T307N	aCt	aAt	3	3	AY.75	0.000168
S	307	T307I	aCt	aTt	3	3	AY.9	0.000203
S	307	T307I	aCt	aTt	3	3	B.1.1.214	0.000166
S	307	T307I	aCt	aTt	3	3	B.1.177.21	0.000229
S	307	T307A	Act	Gct	3	3	B.1.2	0.000026
S	307	T307T	acT	acC	3	3	B.1.2	0.000026
S	307	T307T	acT	acC	3	3	B.1.258	0.0002
S	307	T307I	aCt	aTt	3	3	B.1.258	0.0002
S	307	T307A	Act	Gct	3	3	B.1.320	0.003736
S	307	T307del	ACT	---	3	3	B.1.351.2	0.000908
S	307	T307I	aCt	aTt	3	3	B.1.570	0.008824
S	307	T307I	aCt	aTt	3	3	B.1.637	0.000219
S	307	T307P	Act	Cct	2	2		0.111111
S	307	T307del	ACT	---	2	2		0.111111
S	307	T307V	ACt	GTt	2	2		0.111111
S	307	T307A	Act	Gct	2	2		0.111111
S	307	T307I	aCt	aTt	2	2		0.111111
S	307	T307L	ACt	CTt	2	2	All	0
S	307	T307I	aCt	aTt	2	2	AY.121	0.000271
S	307	T307I	aCt	aTt	2	2	AY.13	0.000322
S	307	T307T	acT	acC	2	2	AY.20	0.000078
S	307	T307del	ACT	---	2	2	AY.25	0.000012
S	307	T307N	aCt	aAt	2	2	AY.25	0.000012
S	307	T307I	aCt	aTt	2	2	AY.32	0.001065
S	307	T307I	aCt	aTt	2	2	AY.36	0.000296
S	307	T307T	acT	acC	2	2	AY.39	0.000049
S	307	T307T	acT	acA	2	2	AY.39.1	0.000079
S	307	T307I	aCt	aTt	2	2	AY.4.5	0.000215
S	307	T307A	Act	Gct	2	2	AY.43	0.000009
S	307	T307del2	ACt	--t	2	2	AY.43	0.000009
S	307	T307I	aCt	aTt	2	2	AY.58	0.001815
S	307	T307S	aCt	aGt	1	2	AY.61	0.000105
S	307	T307S	Act	Tct	1	2	AY.61	0.000105
S	307	T307T	acT	acC	2	2	AY.73	0.001331
S	307	T307T	acT	acC	2	2	AY.75	0.000112
S	307	T307S	aCt	aGt	2	2	AY.79	0.002421
S	307	T307T	acT	acA	2	2	AY.84	0.000875
S	307	T307I	aCt	aTt	2	2	AY.94	0.000885
S	307	T307N	aCt	aAt	2	2	B.1	0.000018
S	307	T307A	Act	Gct	2	2	B.1.1	0.000036
S	307	T307I	aCt	aTt	2	2	B.1.1.181	0.009091
S	307	T307I	aCt	aTt	2	2	B.1.1.306	0.000877
S	307	T307I	aCt	aTt	2	2	B.1.1.434	0.000697
S	307	T307S	Act	Tct	2	2	B.1.1.70	0.000682
S	307	T307A	Act	Gct	2	2	B.1.160	0.000062
S	307	T307A	Act	Gct	2	2	B.1.177	0.000026
S	307	T307S	aCt	aGt	2	2	B.1.177	0.000026
S	307	T307I	aCt	aTt	2	2	B.1.177.15	0.001262
S	307	T307I	aCt	aTt	2	2	B.1.177.60	0.000437
S	307	T307del	ACT	---	2	2	B.1.2	0.000018
S	307	T307S	Act	Tct	2	2	B.1.2	0.000018
S	307	T307del1	Act	-ct	1	2	B.1.2	0.000009
S	307	T307del1	aCt	a-t	1	2	B.1.2	0.000009
S	307	T307I	aCt	aTt	2	2	B.1.258.11	0.000793
S	307	T307T	acT	acC	2	2	B.1.258.17	0.000208
S	307	T307I	aCt	aTt	2	2	B.1.279	0.001027
S	307	T307T	acT	acC	2	2	B.1.351	0.000059
S	307	T307I	aCt	aTt	2	2	B.1.424	0.016129
S	307	T307T	acT	acA	1	2	B.1.427	0.00005
S	307	T307T	acT	acC	1	2	B.1.427	0.00005
S	307	T307I	aCt	aTt	2	2	B.1.438.1	0.000215
S	307	T307I	aCt	aTt	2	2	B.1.470	0.002809
S	307	T307I	aCt	aTt	2	2	B.1.524	0.002813
S	307	T307I	aCt	aTt	2	2	B.1.565	0.001621
S	307	T307del	ACT	---	2	2	B.1.576	0.001813
S	307	T307N	aCt	aAt	2	2	B.1.617.2	0.000008
S	307	T307A	Act	Gct	2	2	B.1.617.2	0.000008
S	307	T307del	ACT	---	2	2	B.1.617.2	0.000008
S	307	T307I	aCt	aTt	2	2	C.18	0.005181
S	307	T307I	aCt	aTt	2	2	C.36.3	0.001134
S	307	T307T	acT	acC	2	2	D.2	0.00015
S	307	T307A	Act	Gct	2	2	D.2	0.00015
S	307	T307I	aCt	aTt	2	2	P.2	0.000373
S	307	T307I	aCt	aTt	2	2	Q.3	0.00029
S	307	T307I	aCt	aTt	2	2	Q.8	0.00033
S	307	T307del	ACT	---	1	1	A	0.000387
S	307	T307I	aCt	aTt	1	1	A.2.5	0.000499
S	307	T307del	ACT	---	1	1	A.2.5	0.000499
S	307	T307I	aCt	aTt	1	1	A.2.5.3	0.010309
S	307	T307Y	ACt	TAt	1	1	All	0
S	307	T307Q	ACT	CAG	1	1	All	0
S	307	T307H	ACt	CAt	1	1	All	0
S	307	T307K	aCT	aAG	1	1	All	0
S	307	T307W	ACT	TGG	1	1	All	0
S	307	T307S	Act	Tct	1	1	AT.1	0.005128
S	307	T307T	acT	acC	1	1	AU.2	0.002421
S	307	T307A	Act	Gct	1	1	AY.100	0.000046
S	307	T307del	ACT	---	1	1	AY.101	0.00049
S	307	T307T	acT	acA	1	1	AY.102	0.000027
S	307	T307N	aCt	aAt	1	1	AY.102	0.000027
S	307	T307A	Act	Gct	1	1	AY.102	0.000027
S	307	T307del	ACT	---	1	1	AY.108	0.001103
S	307	T307I	aCt	aTt	1	1	AY.109	0.00074
S	307	T307D	ACt	GAt	1	1	AY.110	0.000113
S	307	T307T	acT	acC	1	1	AY.110	0.000113
S	307	T307D	ACt	GAt	1	1	AY.113	0.000142
S	307	T307I	aCt	aTt	1	1	AY.116	0.000287
S	307	T307T	acT	acC	1	1	AY.118	0.000063
S	307	T307N	aCt	aAt	1	1	AY.119	0.000035
S	307	T307I	aCt	aTt	1	1	AY.120	0.000037
S	307	T307del	ACT	---	1	1	AY.120	0.000037
S	307	T307I	aCt	aTt	1	1	AY.16	0.00038
S	307	T307T	acT	acA	1	1	AY.16.1	0.00047
S	307	T307A	Act	Gct	1	1	AY.23	0.00007
S	307	T307A	Act	Gct	1	1	AY.23.1	0.000417
S	307	T307T	acT	acC	1	1	AY.25	0.000006
S	307	T307del2	ACt	--t	1	1	AY.25	0.000006
S	307	T307del	ACT	---	1	1	AY.26	0.000028
S	307	T307I	aCt	aTt	1	1	AY.29.1	0.000221
S	307	T307W	ACT	TGG	1	1	AY.3	0.00001
S	307	T307A	Act	Gct	1	1	AY.3	0.00001
S	307	T307D	ACt	GAt	1	1	AY.3	0.00001
S	307	T307N	aCt	aAt	1	1	AY.33	0.000067
S	307	T307I	aCt	aTt	1	1	AY.34	0.000097
S	307	T307I	aCt	aTt	1	1	AY.39.1	0.00004
S	307	T307N	aCt	aAt	1	1	AY.4	0.000002
S	307	T307D	ACt	GAt	1	1	AY.42	0.00004
S	307	T307V	ACt	GTt	1	1	AY.43	0.000004
S	307	T307D	ACt	GAt	1	1	AY.44	0.000006
S	307	T307S	Act	Tct	1	1	AY.44	0.000006
S	307	T307T	acT	acC	1	1	AY.45	0.000122
S	307	T307I	aCt	aTt	1	1	AY.46.4	0.000165
S	307	T307I	aCt	aTt	1	1	AY.46.5	0.000198
S	307	T307S	AcT	TcG	1	1	AY.46.6	0.000072
S	307	T307T	acT	acC	1	1	AY.46.6	0.000072
S	307	T307N	aCt	aAt	1	1	AY.46.6	0.000072
S	307	T307I	aCt	aTt	1	1	AY.46.6	0.000072
S	307	T307del	ACT	---	1	1	AY.46.6	0.000072
S	307	T307S	Act	Tct	1	1	AY.47	0.000031
S	307	T307T	acT	acC	1	1	AY.49	0.003195
S	307	T307I	aCt	aTt	1	1	AY.5.3	0.000337
S	307	T307I	aCt	aTt	1	1	AY.54	0.000095
S	307	T307I	aCt	aTt	1	1	AY.55	0.000917
S	307	T307S	Act	Tct	1	1	AY.59	0.00053
S	307	T307del	ACT	---	1	1	AY.60	0.000938
S	307	T307del	ACT	---	1	1	AY.61	0.000105
S	307	T307I	aCt	aTt	1	1	AY.61	0.000105
S	307	T307D	ACt	GAt	1	1	AY.67	0.000464
S	307	T307A	Act	Gct	1	1	AY.67	0.000464
S	307	T307I	aCt	aTt	1	1	AY.7.1	0.000113
S	307	T307S	aCt	aGt	1	1	AY.75	0.000056
S	307	T307T	acT	acC	1	1	AY.75.1	0.00018
S	307	T307I	aCt	aTt	1	1	AY.75.1	0.00018
S	307	T307I	aCt	aTt	1	1	AY.8	0.000606
S	307	T307del2	ACt	--t	1	1	AY.84	0.000437
S	307	T307I	aCt	aTt	1	1	AY.86	0.00083
S	307	T307del	ACT	---	1	1	AY.9	0.000068
S	307	T307I	aCt	aTt	1	1	AY.9.1	0.000084
S	307	T307T	acT	acC	1	1	AY.9.1	0.000084
S	307	T307D	ACt	GAt	1	1	AY.9.2	0.000037
S	307	T307N	aCt	aAt	1	1	AY.92	0.000287
S	307	T307del	ACT	---	1	1	AY.98.1	0.000048
S	307	T307D	ACt	GAt	1	1	AY.99	0.001049
S	307	T307del	ACT	---	1	1	AY.99	0.001049
S	307	T307D	ACt	GAt	1	1	B.1	0.000009
S	307	T307del1	acT	ac-	1	1	B.1	0.000009
S	307	T307del	ACT	---	1	1	B.1.1	0.000018
S	307	T307L	ACt	CTt	1	1	B.1.1	0.000018
S	307	T307I	aCt	aTt	1	1	B.1.1.1	0.000327
S	307	T307T	acT	acG	1	1	B.1.1.118	0.010204
S	307	T307I	aCt	aTt	1	1	B.1.1.153	0.001095
S	307	T307I	aCt	aTt	1	1	B.1.1.176	0.000439
S	307	T307I	aCt	aTt	1	1	B.1.1.189	0.001513
S	307	T307I	aCt	aTt	1	1	B.1.1.230	0.009174
S	307	T307I	aCt	aTt	1	1	B.1.1.28	0.000311
S	307	T307del	ACT	---	1	1	B.1.1.301	0.001179
S	307	T307del2	ACt	--t	1	1	B.1.1.306	0.000438
S	307	T307I	aCt	aTt	1	1	B.1.1.33	0.000421
S	307	T307I	aCt	aTt	1	1	B.1.1.362	0.005618
S	307	T307I	aCt	aTt	1	1	B.1.1.370	0.012658
S	307	T307I	aCt	aTt	1	1	B.1.1.432	0.001266
S	307	T307A	Act	Gct	1	1	B.1.1.486	0.001577
S	307	T307S	Act	Tct	1	1	B.1.1.519	0.00004
S	307	T307I	aCt	aTt	1	1	B.1.1.67	0.004566
S	307	T307Y	ACt	TAt	1	1	B.1.1.7	0.000001
S	307	T307T	acT	acA	1	1	B.1.1.70	0.000341
S	307	T307I	aCt	aTt	1	1	B.1.1.70	0.000341
S	307	T307T	acT	acA	1	1	B.1.110.3	0.000718
S	307	T307I	aCt	aTt	1	1	B.1.164	0.014925
S	307	T307T	acT	acA	1	1	B.1.177	0.000013
S	307	T307N	aCt	aAt	1	1	B.1.177	0.000013
S	307	T307del	ACT	---	1	1	B.1.177	0.000013
S	307	T307I	aCt	aTt	1	1	B.1.177.35	0.000691
S	307	T307T	acT	acA	1	1	B.1.177.44	0.000519
S	307	T307A	Act	Gct	1	1	B.1.177.44	0.000519
S	307	T307I	aCt	aTt	1	1	B.1.177.54	0.000606
S	307	T307I	aCt	aTt	1	1	B.1.177.7	0.000165
S	307	T307I	aCt	aTt	1	1	B.1.177.8	0.000752
S	307	T307I	aCt	aTt	1	1	B.1.177.83	0.001481
S	307	T307I	aCt	aTt	1	1	B.1.177.9	0.001332
S	307	T307I	aCt	aTt	1	1	B.1.189	0.004292
S	307	T307N	aCt	aAt	1	1	B.1.234	0.000132
S	307	T307I	aCt	aTt	1	1	B.1.239	0.001221
S	307	T307T	acT	acC	1	1	B.1.241	0.000812
S	307	T307N	aCt	aAt	1	1	B.1.258	0.000067
S	307	T307A	Act	Gct	1	1	B.1.258.11	0.000396
S	307	T307I	aCt	aTt	1	1	B.1.258.21	0.007752
S	307	T307I	aCt	aTt	1	1	B.1.284	0.013158
S	307	T307T	acT	acC	1	1	B.1.311	0.000275
S	307	T307I	aCt	aTt	1	1	B.1.320	0.001245
S	307	T307I	aCt	aTt	1	1	B.1.324	0.001605
S	307	T307I	aCt	aTt	1	1	B.1.346	0.001311
S	307	T307T	acT	acC	1	1	B.1.36.29	0.000517
S	307	T307I	aCt	aTt	1	1	B.1.36.34	0.021277
S	307	T307I	aCt	aTt	1	1	B.1.36.36	0.000602
S	307	T307I	aCt	aTt	1	1	B.1.36.38	0.001642
S	307	T307I	aCt	aTt	1	1	B.1.36.39	0.002217
S	307	T307I	aCt	aTt	1	1	B.1.36.8	0.001
S	307	T307I	aCt	aTt	1	1	B.1.360	0.012658
S	307	T307T	acT	acA	1	1	B.1.369	0.000285
S	307	T307T	acT	acC	1	1	B.1.398	0.002976
S	307	T307T	acT	acA	1	1	B.1.400	0.000429
S	307	T307I	aCt	aTt	1	1	B.1.409	0.000781
S	307	T307I	aCt	aTt	1	1	B.1.413	0.004255
S	307	T307del	ACT	---	1	1	B.1.416.1	0.001563
S	307	T307A	Act	Gct	1	1	B.1.427	0.00005
S	307	T307I	aCt	aTt	1	1	B.1.427	0.00005
S	307	T307S	Act	Tct	1	1	B.1.429	0.000024
S	307	T307T	acT	acA	1	1	B.1.429	0.000024
S	307	T307I	aCt	aTt	1	1	B.1.468	0.005714
S	307	T307I	aCt	aTt	1	1	B.1.517	0.000427
S	307	T307I	aCt	aTt	1	1	B.1.523	0.002451
S	307	T307I	aCt	aTt	1	1	B.1.525	0.000113
S	307	T307T	acT	acC	1	1	B.1.526	0.000024
S	307	T307S	Act	Tct	1	1	B.1.546	0.003704
S	307	T307A	Act	Gct	1	1	B.1.564	0.000426
S	307	T307I	aCt	aTt	1	1	B.1.574	0.002151
S	307	T307I	aCt	aTt	1	1	B.1.576	0.000907
S	307	T307P	Act	Cct	1	1	B.1.582	0.000491
S	307	T307I	aCt	aTt	1	1	B.1.595.4	0.007299
S	307	T307T	acT	acC	1	1	B.1.596	0.000087
S	307	T307I	aCt	aTt	1	1	B.1.600	0.005848
S	307	T307T	acT	acC	1	1	B.1.617.1	0.000129
S	307	T307del	ACT	---	1	1	B.1.617.1	0.000129
S	307	T307K	aCT	aAG	1	1	B.1.617.2	0.000004
S	307	T307H	ACt	CAt	1	1	B.1.617.2	0.000004
S	307	T307Q	ACT	CAG	1	1	B.1.617.2	0.000004
S	307	T307D	ACt	GAt	1	1	B.1.617.2	0.000004
S	307	T307del	ACT	---	1	1	B.1.620	0.000946
S	307	T307I	aCt	aTt	1	1	B.1.621	0.000089
S	307	T307I	aCt	aTt	1	1	B.1.621.1	0.000506
S	307	T307del	ACT	---	1	1	B.1.630	0.005236
S	307	T307T	acT	acC	1	1	B.6.6	0.000889
S	307	T307del	ACT	---	1	1	C.1.2	0.004255
S	307	T307I	aCt	aTt	1	1	C.16	0.00106
S	307	T307I	aCt	aTt	1	1	C.35	0.000774
S	307	T307S	Act	Tct	1	1	D.2	0.000075
S	307	T307I	aCt	aTt	1	1	N.4	0.004255
S	307	T307L	ACt	CTt	1	1	P.1	0.000016
S	307	T307S	aCt	aGt	1	1	P.1.14	0.000048
S	307	T307T	acT	acC	1	1	P.1.14	0.000048
S	307	T307del1	ACT	-NN	1	1	P.1.15	0.000232
S	307	T307I	aCt	aTt	1	1	P.1.15	0.000232
S	307	T307I	aCt	aTt	1	1	P.1.2	0.001156
S	307	T307I	aCt	aTt	1	1	Q.1	0.000126
S	307	T307T	acT	acA	1	1	Q.6	0.006623

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.