CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 306

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S306F306FsynttCttT84358435122478-22480
S306F306LnonsynTtcCtc12428780.70692422478-22480
S306F306LnonsynttCttG12422440.19645722478-22480
S306F306LnonsynttCttA12421200.096618422478-22480
S306F306deldelTTC---113113122478-22480
S306F306SnonsyntTctCc56360.64285722478-22480
S306F306SnonsyntTCtCA56180.32142922478-22480
S306F306SnonsyntTCtCG5620.035714322478-22480
S306F306InonsynTtcAtc18160.88888922478-22480
S306F306InonsynTtCAtA1810.055555622478-22480
S306F306InonsynTtCAtT1810.055555622478-22480
S306F306VnonsynTtcGtc1616122478-22480
S306F306YnonsyntTctAc77122478-22480
S306F306CnonsyntTctGc66122478-22480
S306F306del1delttCtt-33122478-22480
S306F306TnonsynTTCACA320.66666722478-22480
S306F306TnonsynTTcACc310.33333322478-22480
S306F306PnonsynTTCCCT210.522478-22480
S306F306PnonsynTTcCCc210.522478-22480
S306F306del2deltTCt--11122478-22480
S306F306NnonsynTTcAAc11122478-22480

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S306F306FttCttT84358435All0.001613
S306F306FttCttT18851885D.20.141453
S306F306FttCttT15631563B.1.1.70.001399
S306F306LTtcCtc8781242All0.000168
S306F306LttCttG2441242All0.000047
S306F306LttCttA1201242All0.000023
S306F306FttCttT837837AY.30.008325
S306F306FttCttT818818AY.40.001273
S306F306LTtcCtc585585B.1.1.5230.914062
S306F306FttCttT273273B.1.617.20.001028
S306F306FttCttT220220B.1.20.001937
S306F306FttCttT213213AY.420.008569
S306F306FttCttT212212B.1.1770.002792
S306F306FttCttT179179AY.240.077155
S306F306LttCttG161161AY.850.068774
S306F306FttCttT156156AY.98.10.007555
S306F306FttCttT144144AY.250.000866
S306F306delTTC---113113All0.000022
S306F306FttCttT9393AY.1000.004279
S306F306LTtcCtc7282B.1.1.70.000064
S306F306LttCttG582B.1.1.70.000004
S306F306LttCttA582B.1.1.70.000004
S306F306FttCttT8181AY.1200.003011
S306F306FttCttT7474AY.430.000328
S306F306FttCttT7373AY.1030.000453
S306F306FttCttT6969AY.390.001705
S306F306FttCttT6363B.10.000577
S306F306FttCttT6363B.1.3510.001873
S306F306FttCttT5959AY.60.002427
S306F306LttCttA5959B.1.36.240.364198
S306F306StTctCc3656All0.000007
S306F306StTCtCA1856All0.000003
S306F306StTCtCG256All0
S306F306FttCttT5656AY.440.000341
S306F306FttCttT5555AY.39.10.002179
S306F306FttCttT5151B.1.1.2770.038695
S306F306LTtcCtc4646AY.116.10.014326
S306F306LTtcCtc2344AY.40.000036
S306F306LttCttA1944AY.40.00003
S306F306LttCttG244AY.40.000003
S306F306FttCttT4343B.1.1.3430.895833
S306F306FttCttT4242P.10.000662
S306F306FttCttT3939B.1.1.4180.886364
S306F306FttCttT3939B.1.5960.003398
S306F306FttCttT3636B.1.1.1530.03943
S306F306delTTC---3434B.1.1.70.00003
S306F306FttCttT3434B.1.1110.039953
S306F306FttCttT3333B.1.243.20.478261
S306F306FttCttT3131B.1.2430.002157
S306F306FttCttT2828AY.200.001088
S306F306FttCttT2626B.1.1.1890.039334
S306F306FttCttT2626B.1.258.170.002703
S306F306LttCttG2525AY.4.2.10.003725
S306F306FttCttT2323B.1.1.5190.000913
S306F306FttCttT2323B.1.1600.000717
S306F306FttCttT2222AY.1180.001378
S306F306LTtcCtc2022AY.440.000122
S306F306LttCttA222AY.440.000012
S306F306FttCttT2222B.1.10.000399
S306F306FttCttT2121AY.1140.004853
S306F306LTtcCtc2021B.1.10.000363
S306F306LttCttA121B.1.10.000018
S306F306FttCttT2121B.1.4290.000494
S306F306FttCttT2121B.1.5260.000494
S306F306FttCttT1919AY.260.000538
S306F306LTtcCtc1919AY.470.000591
S306F306LTtcCtc1619B.10.000147
S306F306LttCttG219B.10.000018
S306F306LttCttA119B.10.000009
S306F306FttCttT1919B.1.1.2220.003876
S306F306ITtcAtc1618All0.000003
S306F306ITtCAtA118All0
S306F306ITtCAtT118All0
S306F306FttCttT1818AY.1020.000477
S306F306VTtcGtc1616All0.000003
S306F306FttCttT1616AY.450.001947
S306F306FttCttT1616B.1.5680.017778
S306F306FttCttT1414AY.290.000221
S306F306FttCttT1313A.210.036011
S306F306LttCttG1013AY.250.00006
S306F306LTtcCtc313AY.250.000018
S306F306LttCttA1313AY.290.000205
S306F306delTTC---1313B.10.000119
S306F306FttCttT1212AY.1190.000424
S306F306FttCttT1212AY.230.000837
S306F306LttCttG812AY.30.00008
S306F306LttCttA312AY.30.00003
S306F306LTtcCtc112AY.30.00001
S306F306LTtcCtc1112AY.430.000049
S306F306LttCttA112AY.430.000004
S306F306FttCttT1111B.1.1.630.004244
S306F306VTtcGtc1111B.1.1.70.00001
S306F306LttCttG611B.1.617.20.000023
S306F306LTtcCtc411B.1.617.20.000015
S306F306LttCttA111B.1.617.20.000004
S306F306FttCttT1010AY.50.000206
S306F306FttCttT1010B.1.2400.002156
S306F306FttCttT1010B.1.2580.000665
S306F306FttCttT1010B.1.4270.000505
S306F306FttCttT1010Q.10.001263
S306F306FttCttT99AU.30.018987
S306F306FttCttT99B.1.2210.000639
S306F306FttCttT88AY.10.003166
S306F306FttCttT88AY.460.000833
S306F306FttCttT88AY.920.002298
S306F306FttCttT88B.1.1.2140.000444
S306F306LTtcCtc88B.1.1.3170.003294
S306F306YtTctAc77All0.000001
S306F306FttCttT77AY.4.20.000152
S306F306StTCtCA57AY.430.000022
S306F306StTctCc27AY.430.000009
S306F306FttCttT77AY.470.000218
S306F306FttCttT77AY.680.001916
S306F306FttCttT77B.1.1.3260.012324
S306F306FttCttT77B.1.1.330.002946
S306F306FttCttT77B.1.1.370.00135
S306F306LTtcCtc57B.1.20.000044
S306F306LttCttG17B.1.20.000009
S306F306LttCttA17B.1.20.000009
S306F306delTTC---77B.1.3510.000208
S306F306FttCttT77B.1.466.20.002739
S306F306FttCttT77B.1.940.189189
S306F306FttCttT77C.36.30.003971
S306F306FttCttT77P.1.160.002619
S306F306CtTctGc66All0.000001
S306F306delTTC---66AY.430.000027
S306F306FttCttT66AY.7.10.000676
S306F306FttCttT66B.1.1.3540.026316
S306F306StTctCc66B.1.1.70.000005
S306F306FttCttT66B.1.3690.001711
S306F306FttCttT66B.1.5250.000679
S306F306LttCttG56P.10.000079
S306F306LTtcCtc16P.10.000016
S306F306FttCttT55AY.340.000485
S306F306FttCttT55AY.4.50.000537
S306F306FttCttT55AY.840.002187
S306F306FttCttT55AY.980.000395
S306F306FttCttT55B.1.1.250.002843
S306F306FttCttT55B.1.2340.00066
S306F306FttCttT55B.1.360.00073
S306F306delTTC---55B.1.5250.000566
S306F306FttCttT55P.1.140.000239
S306F306LTtcCtc24AY.1020.000053
S306F306LttCttA14AY.1020.000027
S306F306LttCttG14AY.1020.000027
S306F306FttCttT44AY.1160.001147
S306F306FttCttT44AY.1170.000338
S306F306FttCttT44AY.1210.000541
S306F306FttCttT44AY.270.000259
S306F306StTctCc44AY.330.000267
S306F306FttCttT44AY.9.10.000335
S306F306FttCttT44B.1.1.2840.00043
S306F306FttCttT44B.1.1.4330.005698
S306F306LTtcCtc24B.1.1600.000062
S306F306LttCttG14B.1.1600.000031
S306F306LttCttA14B.1.1600.000031
S306F306FttCttT44B.1.177.810.000757
S306F306StTctCc44B.1.20.000035
S306F306FttCttT44B.1.258.90.02
S306F306FttCttT44B.1.3110.001098
S306F306FttCttT44B.1.36.80.004
S306F306FttCttT44B.1.4990.004202
S306F306LTtcCtc44B.1.5260.000094
S306F306FttCttT44B.1.6050.02381
S306F306delTTC---44B.1.617.20.000015
S306F306FttCttT44B.1.6370.000292
S306F306delTTC---44P.10.000063
S306F306FttCttT44R.10.00036
S306F306FttCttT33A.10.000846
S306F306del1ttCtt-33All0.000001
S306F306TTTCACA23All0
S306F306TTTcACc13All0
S306F306FttCttT33AY.1060.001005
S306F306LttCttG33AY.1190.000106
S306F306FttCttT33AY.23.10.001252
S306F306delTTC---33AY.250.000018
S306F306LttCttG33AY.29.10.000662
S306F306delTTC---33AY.30.00003
S306F306FttCttT33AY.330.0002
S306F306delTTC---33AY.40.000005
S306F306FttCttT33AY.540.000286
S306F306FttCttT33AY.590.001589
S306F306FttCttT33AY.610.000314
S306F306FttCttT33AY.740.000347
S306F306FttCttT33AY.750.000168
S306F306FttCttT33AY.90.000203
S306F306FttCttT33AY.99.20.000276
S306F306LttCttG33B.1.1.2160.002671
S306F306FttCttT33B.1.1.2160.002671
S306F306FttCttT33B.1.1.3060.001315
S306F306ITtcAtc33B.1.1.3160.002775
S306F306FttCttT33B.1.1.4480.006098
S306F306LTtcCtc33B.1.1.5190.000119
S306F306LTtcCtc33B.1.1310.026316
S306F306LTtcCtc33B.1.160.260.007264
S306F306FttCttT33B.1.177.210.000229
S306F306FttCttT33B.1.177.600.000655
S306F306LttCttA33B.1.2430.000209
S306F306delTTC---33B.1.351.20.000908
S306F306FttCttT33B.1.5430.03
S306F306LttCttG23B.1.617.10.000258
S306F306LttCttA13B.1.617.10.000129
S306F306FttCttT33B.1.88.10.014423
S306F306FttCttT33P.1.10.000953
S306F306delTTC---220.111111
S306F306PTTCCCT12All0
S306F306PTTcCCc12All0
S306F306TTTCACA12AY.1020.000027
S306F306TTTcACc12AY.1020.000027
S306F306ITtCAtA12AY.1020.000027
S306F306StTctCc12AY.1020.000027
S306F306ITtcAtc12AY.1020.000027
S306F306StTCtCA12AY.1020.000027
S306F306FttCttT22AY.1070.000932
S306F306FttCttT22AY.1100.000225
S306F306LTtcCtc12AY.1170.000085
S306F306LttCttG12AY.1170.000085
S306F306FttCttT22AY.130.000322
S306F306StTctCc12AY.230.00007
S306F306StTCtCA12AY.230.00007
S306F306StTCtCA12AY.30.00001
S306F306StTCtCG12AY.30.00001
S306F306FttCttT22AY.300.000791
S306F306FttCttT22AY.320.001065
S306F306StTctCc22AY.340.000194
S306F306FttCttT22AY.34.10.00102
S306F306FttCttT22AY.380.000999
S306F306LttCttA22AY.39.10.000079
S306F306del1ttCtt-22AY.40.000003
S306F306FttCttT22AY.4.40.000818
S306F306FttCttT22AY.410.000588
S306F306LTtcCtc22AY.420.00008
S306F306FttCttT22AY.46.50.000397
S306F306FttCttT22AY.550.001835
S306F306FttCttT22AY.650.001066
S306F306StTctCc12AY.670.000464
S306F306StTCtCA12AY.670.000464
S306F306FttCttT22AY.99.10.003106
S306F306StTCtCA12B.10.000009
S306F306StTctCc12B.10.000009
S306F306FttCttT22B.1.1.1410.004024
S306F306FttCttT22B.1.1.2280.006098
S306F306FttCttT22B.1.1.2340.024096
S306F306FttCttT22B.1.1.3160.00185
S306F306FttCttT22B.1.1.3180.000604
S306F306ITtcAtc22B.1.1.70.000002
S306F306LTtcCtc22B.1.1770.000026
S306F306FttCttT22B.1.177.120.000303
S306F306FttCttT22B.1.177.320.002699
S306F306FttCttT22B.1.177.330.003289
S306F306FttCttT22B.1.177.440.001038
S306F306FttCttT22B.1.177.650.001331
S306F306delTTC---22B.1.20.000018
S306F306FttCttT22B.1.36.10.002281
S306F306FttCttT22B.1.36.310.003503
S306F306FttCttT22B.1.4000.000858
S306F306ITtcAtc22B.1.4990.002101
S306F306VTtcGtc22B.1.5260.000047
S306F306FttCttT22B.1.5650.001621
S306F306delTTC---22B.1.5760.001813
S306F306FttCttT22B.1.5820.000981
S306F306FttCttT22B.1.5880.00182
S306F306LttCttA12B.1.5960.000087
S306F306LTtcCtc12B.1.5960.000087
S306F306StTCtCA12B.1.617.20.000004
S306F306StTctCc12B.1.617.20.000004
S306F306FttCttT22B.1.6210.000177
S306F306LTtcCtc22B.6.60.001778
S306F306FttCttT22C.370.000232
S306F306YtTctAc22D.20.00015
S306F306StTctCc22D.20.00015
S306F306FttCttT22N.50.003534
S306F306FttCttT22P.1.120.000968
S306F306FttCttT22P.1.150.000465
S306F306LTtcCtc11A0.000387
S306F306delTTC---11A0.000387
S306F306delTTC---11A.2.50.000499
S306F306FttCttT11A.23.10.000704
S306F306FttCttT11A.290.005319
S306F306NTTcAAc11All0
S306F306del2tTCt--11All0
S306F306ITtcAtc11AT.10.005128
S306F306LttCttA11AY.1000.000046
S306F306delTTC---11AY.1010.00049
S306F306FttCttT11AY.1040.001984
S306F306FttCttT11AY.1080.001103
S306F306delTTC---11AY.1080.001103
S306F306StTCtCA11AY.1100.000113
S306F306FttCttT11AY.1110.000183
S306F306FttCttT11AY.1130.000142
S306F306StTCtCA11AY.1130.000142
S306F306LTtcCtc11AY.1160.000287
S306F306delTTC---11AY.1180.000063
S306F306CtTctGc11AY.1190.000035
S306F306LTtcCtc11AY.120.000316
S306F306FttCttT11AY.120.000316
S306F306delTTC---11AY.1200.000037
S306F306FttCttT11AY.120.10.000321
S306F306FttCttT11AY.120.2.10.000498
S306F306FttCttT11AY.140.000088
S306F306FttCttT11AY.150.002222
S306F306FttCttT11AY.180.010101
S306F306LTtcCtc11AY.230.00007
S306F306LttCttA11AY.23.10.000417
S306F306StTCtCA11AY.250.000006
S306F306delTTC---11AY.260.000028
S306F306FttCttT11AY.3.10.000085
S306F306LttCttG11AY.390.000025
S306F306StTctCc11AY.390.000025
S306F306VTtcGtc11AY.40.000002
S306F306CtTctGc11AY.4.20.000022
S306F306FttCttT11AY.4.2.10.000149
S306F306FttCttT11AY.4.30.000842
S306F306StTCtCA11AY.420.00004
S306F306VTtcGtc11AY.430.000004
S306F306StTCtCA11AY.440.000006
S306F306CtTctGc11AY.440.000006
S306F306YtTctAc11AY.460.000104
S306F306NTTcAAc11AY.460.000104
S306F306StTctCc11AY.460.000104
S306F306ITtcAtc11AY.460.000104
S306F306FttCttT11AY.46.10.001027
S306F306FttCttT11AY.46.40.000165
S306F306StTCtCG11AY.46.60.000072
S306F306delTTC---11AY.46.60.000072
S306F306FttCttT11AY.46.60.000072
S306F306FttCttT11AY.480.000465
S306F306FttCttT11AY.5.40.000277
S306F306StTctCc11AY.530.000288
S306F306FttCttT11AY.570.000656
S306F306FttCttT11AY.580.000907
S306F306PTTcCCc11AY.590.00053
S306F306del2tTCt--11AY.600.000938
S306F306LttCttA11AY.610.000105
S306F306delTTC---11AY.610.000105
S306F306FttCttT11AY.620.000436
S306F306LttCttG11AY.620.000436
S306F306LTtcCtc11AY.650.000533
S306F306FttCttT11AY.700.000209
S306F306FttCttT11AY.720.001361
S306F306FttCttT11AY.75.10.00018
S306F306delTTC---11AY.840.000437
S306F306FttCttT11AY.880.000884
S306F306ITtcAtc11AY.90.000068
S306F306delTTC---11AY.90.000068
S306F306LTtcCtc11AY.9.20.000037
S306F306StTCtCA11AY.9.20.000037
S306F306FttCttT11AY.9.20.000037
S306F306LttCttG11AY.910.00073
S306F306FttCttT11AY.950.000761
S306F306StTCtCA11AY.990.001049
S306F306delTTC---11AY.990.001049
S306F306LTtcCtc11AY.99.10.001553
S306F306FttCttT11AZ.20.000821
S306F306LTtcCtc11B0.000128
S306F306ITtcAtc11B.10.000009
S306F306del1ttCtt-11B.1.10.000018
S306F306PTTCCCT11B.1.10.000018
S306F306delTTC---11B.1.10.000018
S306F306FttCttT11B.1.1.10.000327
S306F306FttCttT11B.1.1.100.001115
S306F306LTtcCtc11B.1.1.1410.002012
S306F306VTtcGtc11B.1.1.1440.028571
S306F306FttCttT11B.1.1.1570.000913
S306F306FttCttT11B.1.1.1610.003534
S306F306FttCttT11B.1.1.1740.003378
S306F306FttCttT11B.1.1.1980.001468
S306F306FttCttT11B.1.1.2070.001182
S306F306ITtcAtc11B.1.1.2310.003096
S306F306FttCttT11B.1.1.2650.003155
S306F306FttCttT11B.1.1.2690.001353
S306F306LTtcCtc11B.1.1.2940.001266
S306F306FttCttT11B.1.1.2940.001266
S306F306FttCttT11B.1.1.3000.010753
S306F306delTTC---11B.1.1.3010.001179
S306F306delTTC---11B.1.1.3060.000438
S306F306FttCttT11B.1.1.3110.000358
S306F306FttCttT11B.1.1.3170.000412
S306F306LTtcCtc11B.1.1.3280.016949
S306F306FttCttT11B.1.1.3480.000796
S306F306LTtcCtc11B.1.1.370.000193
S306F306FttCttT11B.1.1.4290.004608
S306F306FttCttT11B.1.1.5180.006329
S306F306LttCttA11B.1.1.580.005376
S306F306FttCttT11B.1.1.590.006494
S306F306CtTctGc11B.1.1.70.000001
S306F306YtTctAc11B.1.1.70.000001
S306F306FttCttT11B.1.1260.001276
S306F306FttCttT11B.1.1340.005464
S306F306FttCttT11B.1.1390.000733
S306F306StTctCc11B.1.1600.000031
S306F306ITtcAtc11B.1.160.160.000929
S306F306FttCttT11B.1.160.170.001701
S306F306YtTctAc11B.1.1770.000013
S306F306delTTC---11B.1.1770.000013
S306F306FttCttT11B.1.177.230.003236
S306F306FttCttT11B.1.177.40.000211
S306F306FttCttT11B.1.177.570.000281
S306F306FttCttT11B.1.177.70.000165
S306F306FttCttT11B.1.177.750.001041
S306F306LTtcCtc11B.1.177.810.000189
S306F306FttCttT11B.1.177.860.000183
S306F306FttCttT11B.1.2150.009615
S306F306StTctCc11B.1.2210.000071
S306F306FttCttT11B.1.221.40.004167
S306F306FttCttT11B.1.2320.000537
S306F306StTctCc11B.1.2340.000132
S306F306FttCttT11B.1.2410.000812
S306F306ITtCAtT11B.1.2580.000067
S306F306FttCttT11B.1.2820.014925
S306F306FttCttT11B.1.3200.001245
S306F306FttCttT11B.1.3240.001605
S306F306CtTctGc11B.1.3510.00003
S306F306LTtcCtc11B.1.3510.00003
S306F306ITtcAtc11B.1.3510.00003
S306F306LTtcCtc11B.1.351.20.000303
S306F306FttCttT11B.1.36.170.000494
S306F306FttCttT11B.1.36.190.009259
S306F306FttCttT11B.1.36.290.000517
S306F306FttCttT11B.1.36.380.001642
S306F306FttCttT11B.1.3610.001289
S306F306FttCttT11B.1.362.20.004717
S306F306FttCttT11B.1.4090.000781
S306F306FttCttT11B.1.4160.001269
S306F306delTTC---11B.1.416.10.001563
S306F306FttCttT11B.1.4220.000812
S306F306StTctCc11B.1.4270.00005
S306F306CtTctGc11B.1.4290.000024
S306F306LTtcCtc11B.1.4290.000024
S306F306TTTCACA11B.1.4290.000024
S306F306FttCttT11B.1.438.10.000107
S306F306FttCttT11B.1.4590.004082
S306F306FttCttT11B.1.4650.003802
S306F306FttCttT11B.1.4680.005714
S306F306StTctCc11B.1.4700.001404
S306F306LttCttA11B.1.4970.000315
S306F306FttCttT11B.1.517.10.005263
S306F306FttCttT11B.1.5400.009709
S306F306FttCttT11B.1.5500.013699
S306F306FttCttT11B.1.5760.000907
S306F306ITtcAtc11B.1.5770.000687
S306F306FttCttT11B.1.5770.000687
S306F306FttCttT11B.1.5800.004065
S306F306LttCttG11B.1.5880.00091
S306F306FttCttT11B.1.5950.000261
S306F306StTctCc11B.1.5960.000087
S306F306FttCttT11B.1.6090.000479
S306F306delTTC---11B.1.617.10.000129
S306F306FttCttT11B.1.617.10.000129
S306F306YtTctAc11B.1.617.20.000004
S306F306FttCttT11B.1.617.30.002985
S306F306FttCttT11B.1.6190.000871
S306F306LTtcCtc11B.1.619.10.000641
S306F306delTTC---11B.1.6200.000946
S306F306StTctCc11B.1.6270.00202
S306F306FttCttT11B.1.6280.000352
S306F306delTTC---11B.1.6300.005236
S306F306FttCttT11B.1.6320.006711
S306F306FttCttT11B.120.00641
S306F306delTTC---11C.1.20.004255
S306F306FttCttT11C.180.002591
S306F306FttCttT11C.230.005814
S306F306FttCttT11C.330.058824
S306F306StTctCc11P.10.000016
S306F306LTtcCtc11P.1.140.000048
S306F306delTTC---11P.1.150.000232
S306F306LttCttG11P.1.170.000162
S306F306YtTctAc11P.1.170.000162
S306F306FttCttT11P.20.000187
S306F306FttCttT11Q.30.000145
S306F306LTtcCtc11Q.80.000165
S306F306FttCttT11Q.80.000165
S306F306FttCttT11W.40.001351
S306F306FttCttT11Z.10.00289