CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 305

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S305S305SsyntcCtcT138112800.92686522475-22477
S305S305SsyntcCtcA1381950.068790722475-22477
S305S305SsyntcCtcG138160.0043446822475-22477
S305S305deldelTCC---112112122475-22477
S305S305AnonsynTccGcc51350.68627522475-22477
S305S305AnonsynTcCGcG51160.31372622475-22477
S305S305FnonsyntCctTc2424122475-22477
S305S305YnonsyntCctAc17150.88235322475-22477
S305S305YnonsyntCCtAT1720.11764722475-22477
S305S305TnonsynTccAcc16150.937522475-22477
S305S305TnonsynTcCAcT1610.062522475-22477
S305S305PnonsynTccCcc15120.822475-22477
S305S305PnonsynTcCCcT1520.13333322475-22477
S305S305PnonsynTcCCcG1510.066666722475-22477
S305S305del1delTcc-cc88122475-22477
S305S305VnonsynTCCGTG420.522475-22477
S305S305VnonsynTCcGTc410.2522475-22477
S305S305VnonsynTCCGTT410.2522475-22477
S305S305CnonsyntCctGc320.66666722475-22477
S305S305LnonsynTCCCTT310.33333322475-22477
S305S305LnonsynTCcCTc310.33333322475-22477
S305S305LnonsyntCCtTG310.33333322475-22477
S305S305CnonsyntCCtGT310.33333322475-22477
S305S305NnonsynTCcAAc22122475-22477
S305S305InonsynTCcATc22122475-22477
S305S305XnonsyntCCtAG210.522475-22477
S305S305XnonsyntCCtAA210.522475-22477
S305S305GnonsynTCCGGA210.522475-22477
S305S305GnonsynTCCGGG210.522475-22477
S305S305EnonsynTCCGAG11122475-22477
S305S305DnonsynTCcGAc11122475-22477
S305S305RnonsynTCCCGG11122475-22477
S305S305WnonsyntCCtGG11122475-22477
S305S305KnonsynTCCAAA11122475-22477

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S305S305StcCtcT12801381All0.000245
S305S305StcCtcA951381All0.000018
S305S305StcCtcG61381All0.000001
S305S305StcCtcT356359B.1.617.20.00134
S305S305StcCtcA2359B.1.617.20.000008
S305S305StcCtcG1359B.1.617.20.000004
S305S305StcCtcT171184B.1.1.70.000153
S305S305StcCtcA13184B.1.1.70.000012
S305S305StcCtcT168168AY.430.000744
S305S305StcCtcT145152B.10.001328
S305S305StcCtcA7152B.10.000064
S305S305delTCC---112112All0.000021
S305S305StcCtcT4966AY.40.000076
S305S305StcCtcA1766AY.40.000026
S305S305StcCtcT6565B.1.2820.970149
S305S305StcCtcT3652AY.250.000217
S305S305StcCtcA1652AY.250.000096
S305S305ATccGcc3551All0.000007
S305S305ATcCGcG1651All0.000003
S305S305StcCtcT3737AY.390.000914
S305S305delTCC---3434B.1.1.70.00003
S305S305StcCtcT1825B.1.20.000158
S305S305StcCtcA725B.1.20.000062
S305S305FtCctTc2424All0.000005
S305S305StcCtcT1119AY.1030.000068
S305S305StcCtcA819AY.1030.00005
S305S305YtCctAc1517All0.000003
S305S305YtCCtAT217All0
S305S305TTccAcc1516All0.000003
S305S305TTcCAcT116All0
S305S305PTccCcc1215All0.000002
S305S305PTcCCcT215All0
S305S305PTcCCcG115All0
S305S305StcCtcT1314AY.330.000868
S305S305StcCtcG114AY.330.000067
S305S305StcCtcT1114B.1.1.5190.000437
S305S305StcCtcA314B.1.1.5190.000119
S305S305delTCC---1313B.10.000119
S305S305StcCtcT1313B.1.5260.000306
S305S305StcCtcT1010B.1.10.000181
S305S305StcCtcT1010B.1.1.540.030211
S305S305del1Tcc-cc88All0.000002
S305S305ATccGcc88B.1.1.70.000007
S305S305ATcCGcG57AY.430.000022
S305S305ATccGcc27AY.430.000009
S305S305StcCtcT77AY.440.000043
S305S305ATccGcc77B.1.20.000062
S305S305delTCC---77B.1.3510.000208
S305S305TTccAcc77B.1.617.20.000026
S305S305StcCtcT67P.10.000095
S305S305StcCtcA17P.10.000016
S305S305StcCtcT77P.1.10.002224
S305S305ATccGcc66AY.40.000009
S305S305delTCC---66AY.430.000027
S305S305StcCtcT66B.1.2340.000792
S305S305StcCtcT66B.1.351.20.001815
S305S305StcCtcT45AY.1020.000106
S305S305StcCtcG15AY.1020.000027
S305S305StcCtcT55AY.1200.000186
S305S305StcCtcT55AY.160.001898
S305S305StcCtcT55AY.200.000194
S305S305StcCtcT35AY.740.000347
S305S305StcCtcA25AY.740.000231
S305S305FtCctTc55B.1.1.70.000004
S305S305StcCtcA35B.1.1770.00004
S305S305StcCtcT25B.1.1770.000026
S305S305delTCC---55B.1.5250.000566
S305S305StcCtcT55B.1.5960.000436
S305S305StcCtcT45D.20.0003
S305S305StcCtcA15D.20.000075
S305S305YtCCtAT240.111111
S305S305YtCctAc240.111111
S305S305VTCCGTG24All0
S305S305VTCcGTc14All0
S305S305VTCCGTT14All0
S305S305StcCtcT44AY.610.000419
S305S305StcCtcT44AY.9.10.000335
S305S305FtCctTc44B.10.000037
S305S305StcCtcT44B.1.177.830.005926
S305S305StcCtcT44B.1.3300.114286
S305S305StcCtcT44B.1.5030.00995
S305S305delTCC---44B.1.617.20.000015
S305S305delTCC---44P.10.000063
S305S305CtCctGc23All0
S305S305CtCCtGT13All0
S305S305LTCcCTc13All0
S305S305LTCCCTT13All0
S305S305LtCCtTG13All0
S305S305delTCC---33AY.250.000018
S305S305delTCC---33AY.30.00003
S305S305delTCC---33AY.40.000005
S305S305StcCtcT23AY.50.000041
S305S305StcCtcA13AY.50.000021
S305S305StcCtcT33B.1.2580.0002
S305S305StcCtcT33B.1.3200.003736
S305S305delTCC---33B.1.351.20.000908
S305S305delTCC---220.111111
S305S305StcCtcT220.111111
S305S305ITCcATc22All0
S305S305NTCcAAc22All0
S305S305XtCCtAG12All0
S305S305GTCCGGG12All0
S305S305XtCCtAA12All0
S305S305GTCCGGA12All0
S305S305ATccGcc12AY.1020.000027
S305S305ATcCGcG12AY.1020.000027
S305S305ATccGcc22AY.1030.000012
S305S305StcCtcT22AY.1160.000574
S305S305PTccCcc22AY.230.000139
S305S305LTCcCTc12AY.30.00001
S305S305LTCCCTT12AY.30.00001
S305S305VTCcGTc12AY.30.00001
S305S305VTCCGTT12AY.30.00001
S305S305StcCtcT22AY.3.10.000171
S305S305StcCtcT12AY.340.000097
S305S305StcCtcG12AY.340.000097
S305S305StcCtcT22AY.420.00008
S305S305ATccGcc12AY.440.000006
S305S305ATcCGcG12AY.440.000006
S305S305StcCtcT22AY.460.000208
S305S305StcCtcT22AY.46.60.000144
S305S305StcCtcT12AY.470.000031
S305S305StcCtcA12AY.470.000031
S305S305StcCtcT22AY.540.000191
S305S305StcCtcA22AY.99.20.000184
S305S305PTccCcc22B.10.000018
S305S305YtCctAc22B.1.10.000036
S305S305YtCctAc22B.1.1.70.000002
S305S305StcCtcA12B.1.1600.000031
S305S305StcCtcT12B.1.1600.000031
S305S305StcCtcT22B.1.177.40.000422
S305S305StcCtcT22B.1.177.540.001213
S305S305StcCtcT22B.1.177.850.01087
S305S305delTCC---22B.1.20.000018
S305S305StcCtcT12B.1.2210.000071
S305S305StcCtcG12B.1.2210.000071
S305S305StcCtcT22B.1.36.80.002
S305S305StcCtcT22B.1.3980.005952
S305S305delTCC---22B.1.5760.001813
S305S305FtCctTc22B.1.617.20.000008
S305S305YtCctAc22B.1.617.20.000008
S305S305ATcCGcG12B.1.617.20.000004
S305S305ATccGcc12B.1.617.20.000004
S305S305FtCctTc22D.20.00015
S305S305StcCtcT22P.20.000373
S305S305delTCC---11A0.000387
S305S305YtCctAc11A.20.000662
S305S305delTCC---11A.2.50.000499
S305S305StcCtcT11A.210.00277
S305S305KTCCAAA11All0
S305S305WtCCtGG11All0
S305S305ETCCGAG11All0
S305S305DTCcGAc11All0
S305S305RTCCCGG11All0
S305S305StcCtcG11AT.10.005128
S305S305delTCC---11AY.1010.00049
S305S305YtCctAc11AY.1020.000027
S305S305XtCCtAG11AY.1020.000027
S305S305TTccAcc11AY.1020.000027
S305S305DTCcGAc11AY.1020.000027
S305S305ETCCGAG11AY.1020.000027
S305S305StcCtcT11AY.1040.001984
S305S305delTCC---11AY.1080.001103
S305S305ATcCGcG11AY.1100.000113
S305S305ATcCGcG11AY.1130.000142
S305S305FtCctTc11AY.1130.000142
S305S305StcCtcA11AY.1170.000085
S305S305delTCC---11AY.1180.000063
S305S305StcCtcT11AY.1190.000035
S305S305PTccCcc11AY.1190.000035
S305S305delTCC---11AY.1200.000037
S305S305StcCtcT11AY.140.000088
S305S305StcCtcT11AY.16.10.00047
S305S305ATccGcc11AY.250.000006
S305S305ITCcATc11AY.250.000006
S305S305StcCtcT11AY.260.000028
S305S305delTCC---11AY.260.000028
S305S305StcCtcA11AY.270.000065
S305S305TTccAcc11AY.30.00001
S305S305StcCtcT11AY.30.00001
S305S305ATcCGcG11AY.30.00001
S305S305PTcCCcG11AY.30.00001
S305S305RTCCCGG11AY.30.00001
S305S305GTCCGGG11AY.30.00001
S305S305StcCtcT11AY.320.000532
S305S305StcCtcT11AY.350.000233
S305S305del1Tcc-cc11AY.360.000148
S305S305StcCtcT11AY.360.000148
S305S305StcCtcA11AY.370.000316
S305S305ATccGcc11AY.380.000499
S305S305StcCtcT11AY.39.10.00004
S305S305ATccGcc11AY.39.10.00004
S305S305FtCctTc11AY.40.000002
S305S305StcCtcT11AY.4.20.000022
S305S305LtCCtTG11AY.4.20.000022
S305S305ATcCGcG11AY.420.00004
S305S305CtCCtGT11AY.430.000004
S305S305del1Tcc-cc11AY.430.000004
S305S305TTccAcc11AY.430.000004
S305S305YtCctAc11AY.430.000004
S305S305TTccAcc11AY.440.000006
S305S305StcCtcT11AY.450.000122
S305S305PTccCcc11AY.460.000104
S305S305StcCtcT11AY.46.50.000198
S305S305delTCC---11AY.46.60.000072
S305S305VTCCGTG11AY.46.60.000072
S305S305StcCtcT11AY.480.000465
S305S305StcCtcT11AY.5.40.000277
S305S305StcCtcT11AY.590.00053
S305S305WtCCtGG11AY.590.00053
S305S305ATccGcc11AY.60.000041
S305S305FtCctTc11AY.60.000041
S305S305delTCC---11AY.610.000105
S305S305StcCtcA11AY.670.000464
S305S305del1Tcc-cc11AY.670.000464
S305S305ATcCGcG11AY.670.000464
S305S305StcCtcA11AY.680.000274
S305S305StcCtcT11AY.750.000056
S305S305delTCC---11AY.840.000437
S305S305delTCC---11AY.90.000068
S305S305ATcCGcG11AY.9.20.000037
S305S305StcCtcT11AY.98.10.000048
S305S305FtCctTc11AY.98.10.000048
S305S305delTCC---11AY.990.001049
S305S305ATcCGcG11AY.990.001049
S305S305StcCtcT11B0.000128
S305S305ATcCGcG11B.10.000009
S305S305TTccAcc11B.10.000009
S305S305ITCcATc11B.1.10.000018
S305S305FtCctTc11B.1.10.000018
S305S305StcCtcT11B.1.1.1910.004762
S305S305ATccGcc11B.1.1.2070.001182
S305S305StcCtcT11B.1.1.2220.000204
S305S305StcCtcT11B.1.1.250.000569
S305S305StcCtcT11B.1.1.2840.000107
S305S305delTCC---11B.1.1.3010.001179
S305S305delTCC---11B.1.1.3060.000438
S305S305ATccGcc11B.1.1.3180.000302
S305S305FtCctTc11B.1.1.4620.008621
S305S305PTccCcc11B.1.1.5170.006803
S305S305StcCtcT11B.1.1.5230.001563
S305S305StcCtcT11B.1.1.630.000386
S305S305del1Tcc-cc11B.1.1.70.000001
S305S305NTCcAAc11B.1.1.70.000001
S305S305TTccAcc11B.1.1.70.000001
S305S305GTCCGGA11B.1.1.70.000001
S305S305PTccCcc11B.1.1.70.000001
S305S305delTCC---11B.1.1770.000013
S305S305del1Tcc-cc11B.1.177.180.00116
S305S305StcCtcT11B.1.177.430.001477
S305S305YtCctAc11B.1.177.440.000519
S305S305PTccCcc11B.1.20.000009
S305S305FtCctTc11B.1.2210.000071
S305S305PTccCcc11B.1.221.20.004016
S305S305FtCctTc11B.1.2340.000132
S305S305FtCctTc11B.1.2360.002053
S305S305CtCctGc11B.1.2430.00007
S305S305StcCtcT11B.1.2430.00007
S305S305PTcCCcT11B.1.2580.000067
S305S305PTccCcc11B.1.3110.000275
S305S305StcCtcA11B.1.3110.000275
S305S305StcCtcT11B.1.3160.111111
S305S305StcCtcT11B.1.3510.00003
S305S305TTccAcc11B.1.3510.00003
S305S305StcCtcT11B.1.360.000146
S305S305StcCtcT11B.1.36.100.004785
S305S305StcCtcT11B.1.36.180.00042
S305S305StcCtcT11B.1.36.290.000517
S305S305ATccGcc11B.1.36.80.001
S305S305StcCtcT11B.1.3660.004878
S305S305FtCctTc11B.1.3690.000285
S305S305StcCtcA11B.1.3990.001934
S305S305delTCC---11B.1.416.10.001563
S305S305PTcCCcT11B.1.4290.000024
S305S305XtCCtAA11B.1.4620.007246
S305S305TTcCAcT11B.1.5260.000024
S305S305StcCtcT11B.1.5510.00129
S305S305StcCtcT11B.1.5750.000303
S305S305StcCtcT11B.1.5770.000687
S305S305PTccCcc11B.1.5950.000261
S305S305YtCctAc11B.1.5960.000087
S305S305StcCtcA11B.1.5970.00463
S305S305StcCtcT11B.1.6090.000479
S305S305delTCC---11B.1.617.10.000129
S305S305NTCcAAc11B.1.617.20.000004
S305S305del1Tcc-cc11B.1.617.20.000004
S305S305KTCCAAA11B.1.617.20.000004
S305S305VTCCGTG11B.1.617.20.000004
S305S305delTCC---11B.1.6200.000946
S305S305StcCtcT11B.1.6210.000089
S305S305del1Tcc-cc11B.1.6210.000089
S305S305StcCtcT11B.1.6280.000352
S305S305delTCC---11B.1.6300.005236
S305S305StcCtcA11B.1.6370.000073
S305S305StcCtcT11B.40.002208
S305S305YtCctAc11B.60.00091
S305S305StcCtcA11B.60.00091
S305S305TTccAcc11B.600.015873
S305S305delTCC---11C.1.20.004255
S305S305CtCctGc11D.20.000075
S305S305YtCctAc11D.20.000075
S305S305FtCctTc11P.10.000016
S305S305delTCC---11P.1.150.000232
S305S305del1Tcc-cc11Q.20.000613
S305S305StcCtcT11R.10.00009
S305S305StcCtcT11Z.10.00289