CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 294

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S294D294DsyngaCgaT2709227092122442-22444
S294D294deldelGAC---151151122442-22444
S294D294YnonsynGacTac1071050.98130822442-22444
S294D294YnonsynGaCTaT10720.018691622442-22444
S294D294NnonsynGacAac52510.98076922442-22444
S294D294NnonsynGaCAaT5210.019230822442-22444
S294D294GnonsyngAcgGc40360.922442-22444
S294D294GnonsyngACgGG4020.0522442-22444
S294D294GnonsyngACgGT4010.02522442-22444
S294D294GnonsyngACgGA4010.02522442-22444
S294D294del1delgaCga-18140.77777822442-22444
S294D294del1delGac-ac1840.22222222442-22444
S294D294EnonsyngaCgaA1690.562522442-22444
S294D294EnonsyngaCgaG1670.437522442-22444
S294D294AnonsyngAcgCc12110.91666722442-22444
S294D294AnonsyngACgCT1210.083333322442-22444
S294D294VnonsyngAcgTc1180.72727322442-22444
S294D294VnonsyngACgTA1130.27272722442-22444
S294D294HnonsynGacCac1010122442-22444
S294D294PnonsynGAcCCc55122442-22444
S294D294RnonsynGACAGA420.522442-22444
S294D294RnonsynGACCGA410.2522442-22444
S294D294RnonsynGACCGG410.2522442-22444
S294D294KnonsynGaCAaG320.66666722442-22444
S294D294KnonsynGaCAaA310.33333322442-22444
S294D294del2delgACg--22122442-22444
S294D294InonsynGAcATc11122442-22444
S294D294SnonsynGAcAGc11122442-22444
S294D294MnonsynGACATG11122442-22444

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S294D294DgaCgaT2709227092All0.005182
S294D294DgaCgaT62286228B.1.360.908666
S294D294DgaCgaT22762276B.1.36.180.956303
S294D294DgaCgaT18801880B.1.36.170.928854
S294D294DgaCgaT17131713B.1.36.290.886187
S294D294DgaCgaT16571657B.1.36.360.997592
S294D294DgaCgaT13091309B.1.36.270.999237
S294D294DgaCgaT937937B.1.36.80.937
S294D294DgaCgaT817817B.1.36.10.931585
S294D294DgaCgaT786786B.1.36.220.949275
S294D294DgaCgaT590590B.1.36.380.968801
S294D294DgaCgaT544544B.1.1.70.000487
S294D294DgaCgaT538538B.1.36.310.942207
S294D294DgaCgaT464464B.1.1770.00611
S294D294DgaCgaT461461B.1.36.210.99568
S294D294DgaCgaT453453B.1.36.251
S294D294DgaCgaT433433B.1.36.390.960089
S294D294DgaCgaT408408B.1.36.160.581197
S294D294DgaCgaT360360B.1.36.371
S294D294DgaCgaT359359B.1.36.350.934896
S294D294DgaCgaT340340B.1.36.260.971429
S294D294DgaCgaT301301B.1.617.20.001133
S294D294DgaCgaT294294B.1.36.90.945338
S294D294DgaCgaT277277B.10.002537
S294D294DgaCgaT254254AY.40.000395
S294D294DgaCgaT248248B.1.36.70.992
S294D294DgaCgaT221221AY.430.000979
S294D294DgaCgaT178178B.1.36.100.851675
S294D294DgaCgaT174174B.1.4680.994286
S294D294DgaCgaT171171B.1.36.280.982759
S294D294DgaCgaT156156B.1.36.240.962963
S294D294delGAC---151151All0.000029
S294D294DgaCgaT131131AY.470.004075
S294D294DgaCgaT129129B.1.36.330.977273
S294D294DgaCgaT116116AY.1030.00072
S294D294YGacTac105107All0.00002
S294D294YGaCTaT2107All0
S294D294DgaCgaT104104B.1.36.121
S294D294DgaCgaT9595P.10.001497
S294D294DgaCgaT9191B.1.20.000801
S294D294DgaCgaT8080AY.50.001652
S294D294DgaCgaT6969B.1.36.20.741935
S294D294DgaCgaT6060AY.390.001483
S294D294DgaCgaT5858AY.30.000577
S294D294DgaCgaT5858B.1.10.001052
S294D294DgaCgaT5858B.1.36.230.95082
S294D294DgaCgaT5656B.1.110.30.04023
S294D294DgaCgaT5656B.1.3260.424242
S294D294DgaCgaT5656B.1.36.200.949153
S294D294DgaCgaT5353AY.250.000319
S294D294NGacAac5152All0.00001
S294D294NGaCAaT152All0
S294D294DgaCgaT4848B.1.1130.75
S294D294DgaCgaT4747B.1.36.341
S294D294DgaCgaT4545AY.440.000274
S294D294DgaCgaT4343B.1.5260.001011
S294D294GgAcgGc3640All0.000007
S294D294GgACgGG240All0
S294D294GgACgGT140All0
S294D294GgACgGA140All0
S294D294delGAC---3939B.1.1.70.000035
S294D294DgaCgaT3535AY.290.000552
S294D294DgaCgaT3434AY.1180.00213
S294D294YGacTac3333AY.40.000051
S294D294DgaCgaT3030A.10.008455
S294D294DgaCgaT3030AY.1190.001059
S294D294DgaCgaT2929B.1.2340.003826
S294D294DgaCgaT2525C.370.002902
S294D294YGacTac2323AY.4.50.002472
S294D294DgaCgaT2323B0.00294
S294D294DgaCgaT2323B.1.2600.076923
S294D294DgaCgaT2222B.1.2470.328358
S294D294delGAC---2121B.10.000192
S294D294DgaCgaT2020AY.39.10.000792
S294D294NGacAac2020B.1.1.70.000018
S294D294DgaCgaT2020B.1.2210.001421
S294D294del1gaCga-1418All0.000003
S294D294del1Gac-ac418All0.000001
S294D294DgaCgaT1818AY.340.001745
S294D294DgaCgaT1717AY.750.000952
S294D294EgaCgaA916All0.000002
S294D294EgaCgaG716All0.000001
S294D294DgaCgaT1616B.1.1.2840.001718
S294D294DgaCgaT1414B.1.258.170.001456
S294D294DgaCgaT1313AY.1130.001851
S294D294DgaCgaT1313AY.200.000505
S294D294DgaCgaT1313AY.460.001353
S294D294AgAcgCc1112All0.000002
S294D294AgACgCT112All0
S294D294DgaCgaT1212AY.9.10.001005
S294D294DgaCgaT1212B.1.1.390.006116
S294D294DgaCgaT1212B.1.1840.705882
S294D294VgAcgTc811All0.000002
S294D294VgACgTA311All0.000001
S294D294DgaCgaT1111AY.330.000735
S294D294GgAcgGc1111AY.390.000272
S294D294HGacCac1010All0.000002
S294D294DgaCgaT99AY.1020.000239
S294D294DgaCgaT99AY.230.000628
S294D294DgaCgaT99AY.810.017928
S294D294DgaCgaT99B.1.1.4060.058442
S294D294DgaCgaT99B.1.1.4340.003137
S294D294DgaCgaT99B.1.2580.000599
S294D294YGacTac99D.20.000675
S294D294DgaCgaT88AY.1000.000368
S294D294DgaCgaT88B.1.6360.053691
S294D294DgaCgaT77B.1.1600.000218
S294D294DgaCgaT77B.1.2100.014925
S294D294delGAC---77B.1.3510.000208
S294D294DgaCgaT77B.1.4290.000165
S294D294delGAC---66AY.290.000095
S294D294DgaCgaT66AY.4.20.00013
S294D294delGAC---66AY.430.000027
S294D294DgaCgaT66AY.730.003992
S294D294DgaCgaT66AY.880.005305
S294D294DgaCgaT66B.1.1.5190.000238
S294D294DgaCgaT66B.1.5330.057692
S294D294PGAcCCc55All0.000001
S294D294DgaCgaT55AY.260.000142
S294D294DgaCgaT55AY.360.000741
S294D294DgaCgaT55AY.420.000201
S294D294GgAcgGc55AY.700.001043
S294D294YGacTac55AY.90.000338
S294D294DgaCgaT55AY.9.20.000184
S294D294DgaCgaT55B.1.1.10.001633
S294D294YGacTac55B.1.1.70.000004
S294D294GgAcgGc45B.1.1.70.000004
S294D294GgACgGT15B.1.1.70.000001
S294D294NGacAac55B.1.20.000044
S294D294delGAC---55B.1.5250.000566
S294D294delGAC---55B.1.617.20.000019
S294D294GgAcgGc55B.1.617.20.000019
S294D294DgaCgaT55D.20.000375
S294D294DgaCgaT55Q.30.000725
S294D294DgaCgaT55R.10.00045
S294D294GgACgGG240.111111
S294D294GgAcgGc240.111111
S294D294DgaCgaT44A0.001548
S294D294RGACAGA24All0
S294D294RGACCGG14All0
S294D294RGACCGA14All0
S294D294DgaCgaT44AY.1050.002572
S294D294DgaCgaT44AY.140.000352
S294D294NGacAac44AY.40.000006
S294D294DgaCgaT44AY.4.50.00043
S294D294DgaCgaT44AY.670.001857
S294D294YGacTac44AY.80.002424
S294D294EgaCgaA34B.10.000027
S294D294EgaCgaG14B.10.000009
S294D294DgaCgaT44B.1.177.210.000306
S294D294DgaCgaT44B.1.177.730.002265
S294D294DgaCgaT44B.1.2140.014652
S294D294del1gaCga-44B.1.2470.059701
S294D294DgaCgaT44B.1.3510.000119
S294D294delGAC---44B.1.351.20.00121
S294D294DgaCgaT44B.1.5960.000349
S294D294NGacAac44B.1.617.20.000015
S294D294delGAC---44P.10.000063
S294D294DgaCgaT44P.1.140.000191
S294D294KGaCAaG23All0
S294D294KGaCAaA13All0
S294D294DgaCgaT33AY.1170.000254
S294D294DgaCgaT33AY.1200.000112
S294D294YGacTac33AY.1200.000112
S294D294delGAC---33AY.40.000005
S294D294RGACAGA13AY.430.000004
S294D294RGACCGG13AY.430.000004
S294D294RGACCGA13AY.430.000004
S294D294DgaCgaT33AY.450.000365
S294D294DgaCgaT33AY.740.000347
S294D294DgaCgaT33AY.770.003382
S294D294DgaCgaT33AY.980.000237
S294D294DgaCgaT33B.1.1.2220.000612
S294D294DgaCgaT33B.1.177.810.000568
S294D294delGAC---33B.1.20.000026
S294D294DgaCgaT33B.1.2810.065217
S294D294DgaCgaT33B.1.3960.002117
S294D294DgaCgaT33B.1.5250.000339
S294D294NGacAac23B.1.5770.001375
S294D294NGaCAaT13B.1.5770.000687
S294D294DgaCgaT33B.1.617.10.000387
S294D294DgaCgaT33B.60.00273
S294D294EgaCgaG220.111111
S294D294delGAC---220.111111
S294D294del2gACg--22All0
S294D294DgaCgaT22AY.100.00106
S294D294NGacAac22AY.1000.000092
S294D294DgaCgaT22AY.1100.000225
S294D294DgaCgaT22AY.1110.000366
S294D294DgaCgaT22AY.16.10.00094
S294D294delGAC---22AY.250.000012
S294D294del2gACg--22AY.250.000012
S294D294DgaCgaT22AY.270.000129
S294D294delGAC---22AY.30.00002
S294D294DgaCgaT22AY.3.10.000171
S294D294DgaCgaT22AY.350.000466
S294D294HGacCac22AY.430.000009
S294D294GgAcgGc22AY.440.000012
S294D294del1gaCga-22AY.440.000012
S294D294delGAC---22AY.46.60.000144
S294D294DgaCgaT22AY.46.60.000144
S294D294DgaCgaT22AY.480.00093
S294D294DgaCgaT22AY.530.000575
S294D294YGacTac22AY.580.001815
S294D294delGAC---22AY.670.000929
S294D294DgaCgaT22AY.75.10.000361
S294D294DgaCgaT22AY.840.000875
S294D294DgaCgaT22AY.90.000135
S294D294del1gaCga-22B.10.000018
S294D294PGAcCCc22B.10.000018
S294D294YGacTac22B.10.000018
S294D294YGacTac22B.1.10.000036
S294D294delGAC---22B.1.10.000036
S294D294del1gaCga-12B.1.10.000018
S294D294del1Gac-ac12B.1.10.000018
S294D294DgaCgaT22B.1.1.280.000622
S294D294AgAcgCc22B.1.1.5190.000079
S294D294DgaCgaT22B.1.1.5210.010695
S294D294VgAcgTc22B.1.1.70.000002
S294D294DgaCgaT22B.1.1.700.000682
S294D294DgaCgaT22B.1.177.160.001329
S294D294DgaCgaT22B.1.177.40.000422
S294D294DgaCgaT22B.1.177.440.001038
S294D294DgaCgaT22B.1.177.450.000762
S294D294YGacTac22B.1.20.000018
S294D294DgaCgaT22B.1.2430.000139
S294D294DgaCgaT22B.1.258.140.001961
S294D294delGAC---22B.1.2600.006689
S294D294DgaCgaT22B.1.3400.008584
S294D294VgACgTA12B.1.3510.00003
S294D294VgAcgTc12B.1.3510.00003
S294D294HGacCac22B.1.4290.000047
S294D294delGAC---22B.1.4560.006536
S294D294DgaCgaT22B.1.4970.00063
S294D294delGAC---22B.1.5760.001813
S294D294DgaCgaT22B.4.10.037736
S294D294DgaCgaT22B.6.60.001778
S294D294DgaCgaT22C.20.032258
S294D294DgaCgaT22P.1.150.000465
S294D294delGAC---22P.1.150.000465
S294D294DgaCgaT22P.20.000373
S294D294DgaCgaT22Q.80.00033
S294D294VgAcgTc11A0.000387
S294D294delGAC---11A0.000387
S294D294NGacAac11A.20.000662
S294D294delGAC---11A.2.50.000499
S294D294DgaCgaT11A.2.5.20.001572
S294D294DgaCgaT11AD.20.000219
S294D294DgaCgaT11AF.10.037037
S294D294DgaCgaT11AH.30.003802
S294D294IGAcATc11All0
S294D294SGAcAGc11All0
S294D294MGACATG11All0
S294D294delGAC---11AY.1010.00049
S294D294DgaCgaT11AY.1010.00049
S294D294del1Gac-ac11AY.1030.000006
S294D294GgAcgGc11AY.1030.000006
S294D294NGacAac11AY.1030.000006
S294D294DgaCgaT11AY.1040.001984
S294D294delGAC---11AY.1080.001103
S294D294RGACAGA11AY.1100.000113
S294D294delGAC---11AY.1130.000142
S294D294NGacAac11AY.1160.000287
S294D294delGAC---11AY.1170.000085
S294D294delGAC---11AY.1180.000063
S294D294delGAC---11AY.1200.000037
S294D294YGacTac11AY.1210.000135
S294D294DgaCgaT11AY.130.000161
S294D294YGacTac11AY.170.008197
S294D294AgAcgCc11AY.230.00007
S294D294HGacCac11AY.230.00007
S294D294GgAcgGc11AY.23.10.000417
S294D294YGacTac11AY.250.000006
S294D294HGacCac11AY.260.000028
S294D294DgaCgaT11AY.29.10.000221
S294D294EgaCgaG11AY.30.00001
S294D294delGAC---11AY.330.000067
S294D294HGacCac11AY.330.000067
S294D294DgaCgaT11AY.34.10.00051
S294D294EgaCgaA11AY.360.000148
S294D294DgaCgaT11AY.370.000316
S294D294NGacAac11AY.39.10.00004
S294D294DgaCgaT11AY.4.30.000842
S294D294AgAcgCc11AY.420.00004
S294D294VgACgTA11AY.430.000004
S294D294GgACgGA11AY.430.000004
S294D294SGAcAGc11AY.430.000004
S294D294AgAcgCc11AY.430.000004
S294D294NGacAac11AY.430.000004
S294D294MGACATG11AY.440.000006
S294D294YGacTac11AY.440.000006
S294D294PGAcCCc11AY.440.000006
S294D294NGacAac11AY.440.000006
S294D294DgaCgaT11AY.46.40.000165
S294D294delGAC---11AY.470.000031
S294D294DgaCgaT11AY.5.30.000337
S294D294delGAC---11AY.510.000909
S294D294DgaCgaT11AY.520.000814
S294D294delGAC---11AY.590.00053
S294D294DgaCgaT11AY.60.000041
S294D294delGAC---11AY.610.000105
S294D294DgaCgaT11AY.650.000533
S294D294DgaCgaT11AY.680.000274
S294D294DgaCgaT11AY.7.10.000113
S294D294DgaCgaT11AY.820.001357
S294D294YGaCTaT11AY.840.000437
S294D294YGacTac11AY.870.000833
S294D294delGAC---11AY.90.000068
S294D294NGacAac11AY.9.20.000037
S294D294YGacTac11AY.9.20.000037
S294D294delGAC---11AY.900.000684
S294D294DgaCgaT11AY.920.000287
S294D294del1Gac-ac11AY.980.000079
S294D294DgaCgaT11AY.98.10.000048
S294D294delGAC---11AY.990.001049
S294D294EgaCgaG11AY.990.001049
S294D294VgAcgTc11B.10.000009
S294D294HGacCac11B.10.000009
S294D294AgAcgCc11B.10.000009
S294D294GgAcgGc11B.10.000009
S294D294EgaCgaA11B.1.10.000018
S294D294VgACgTA11B.1.10.000018
S294D294NGacAac11B.1.10.000018
S294D294AgAcgCc11B.1.10.000018
S294D294del1gaCga-11B.1.1.1210.002427
S294D294DgaCgaT11B.1.1.1530.001095
S294D294DgaCgaT11B.1.1.1760.000439
S294D294DgaCgaT11B.1.1.1890.001513
S294D294DgaCgaT11B.1.1.2100.005714
S294D294delGAC---11B.1.1.3010.001179
S294D294DgaCgaT11B.1.1.3040.002809
S294D294DgaCgaT11B.1.1.3060.000438
S294D294DgaCgaT11B.1.1.3160.000925
S294D294DgaCgaT11B.1.1.330.000421
S294D294DgaCgaT11B.1.1.3550.015385
S294D294DgaCgaT11B.1.1.370.000193
S294D294DgaCgaT11B.1.1.3720.000689
S294D294DgaCgaT11B.1.1.4130.006897
S294D294DgaCgaT11B.1.1.460.004367
S294D294DgaCgaT11B.1.1.510.001718
S294D294DgaCgaT11B.1.1.5260.003546
S294D294AgAcgCc11B.1.1.70.000001
S294D294HGacCac11B.1.1.70.000001
S294D294EgaCgaG11B.1.1.70.000001
S294D294KGaCAaG11B.1.1.70.000001
S294D294VgAcgTc11B.1.1100.004525
S294D294DgaCgaT11B.1.1270.002198
S294D294DgaCgaT11B.1.160.240.004425
S294D294DgaCgaT11B.1.160.300.002976
S294D294DgaCgaT11B.1.160.320.004292
S294D294DgaCgaT11B.1.160.70.002079
S294D294delGAC---11B.1.1770.000013
S294D294YGacTac11B.1.1770.000013
S294D294NGacAac11B.1.1770.000013
S294D294DgaCgaT11B.1.177.200.001517
S294D294DgaCgaT11B.1.177.570.000281
S294D294DgaCgaT11B.1.177.60.000977
S294D294delGAC---11B.1.177.60.000977
S294D294DgaCgaT11B.1.177.600.000218
S294D294DgaCgaT11B.1.177.70.000165
S294D294DgaCgaT11B.1.177.770.000726
S294D294delGAC---11B.1.177.830.001481
S294D294del1Gac-ac11B.1.177.870.000728
S294D294VgAcgTc11B.1.20.000009
S294D294del1gaCga-11B.1.20.000009
S294D294EgaCgaA11B.1.20.000009
S294D294AgAcgCc11B.1.20.000009
S294D294YGacTac11B.1.2210.000071
S294D294DgaCgaT11B.1.2410.000812
S294D294DgaCgaT11B.1.2790.000514
S294D294DgaCgaT11B.1.2910.019231
S294D294DgaCgaT11B.1.3110.000275
S294D294EgaCgaA11B.1.3330.010526
S294D294YGacTac11B.1.3380.008621
S294D294DgaCgaT11B.1.3500.002933
S294D294EgaCgaA11B.1.3510.00003
S294D294KGaCAaG11B.1.3510.00003
S294D294delGAC---11B.1.360.000146
S294D294del1gaCga-11B.1.36.20.010753
S294D294del1gaCga-11B.1.36.290.000517
S294D294YGaCTaT11B.1.36.350.002604
S294D294EgaCgaA11B.1.3620.001541
S294D294DgaCgaT11B.1.3690.000285
S294D294DgaCgaT11B.1.370.014706
S294D294delGAC---11B.1.416.10.001563
S294D294GgAcgGc11B.1.4200.010417
S294D294NGacAac11B.1.4250.002994
S294D294DgaCgaT11B.1.4270.00005
S294D294YGacTac11B.1.4270.00005
S294D294PGAcCCc11B.1.4290.000024
S294D294GgAcgGc11B.1.4290.000024
S294D294delGAC---11B.1.4290.000024
S294D294AgAcgCc11B.1.4290.000024
S294D294DgaCgaT11B.1.438.10.000107
S294D294DgaCgaT11B.1.4560.003268
S294D294EgaCgaG11B.1.466.10.007194
S294D294NGacAac11B.1.5710.009709
S294D294DgaCgaT11B.1.5750.000303
S294D294NGacAac11B.1.5760.000907
S294D294KGaCAaA11B.1.5770.000687
S294D294YGacTac11B.1.5820.000491
S294D294YGacTac11B.1.5960.000087
S294D294YGacTac11B.1.5990.00365
S294D294delGAC---11B.1.6090.000479
S294D294GgAcgGc11B.1.617.10.000129
S294D294del1gaCga-11B.1.617.10.000129
S294D294delGAC---11B.1.617.10.000129
S294D294AgACgCT11B.1.617.20.000004
S294D294YGacTac11B.1.617.20.000004
S294D294delGAC---11B.1.6200.000946
S294D294DgaCgaT11B.1.6210.000089
S294D294delGAC---11B.1.6300.005236
S294D294DgaCgaT11B.30.000831
S294D294VgAcgTc11B.520.010101
S294D294DgaCgaT11B.550.00295
S294D294IGAcATc11B.60.00091
S294D294NGacAac11B.610.005747
S294D294delGAC---11C.1.20.004255
S294D294DgaCgaT11C.350.000774
S294D294DgaCgaT11C.360.000911
S294D294YGacTac11C.370.000116
S294D294HGacCac11D.20.000075
S294D294AgAcgCc11D.20.000075
S294D294PGAcCCc11D.20.000075
S294D294GgAcgGc11P.10.000016
S294D294NGacAac11P.10.000016
S294D294DgaCgaT11P.1.100.000269
S294D294DgaCgaT11P.1.10.10.00813
S294D294DgaCgaT11Q.10.000126