CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 280 | N280N | syn | aaT | aaC | 486 | 486 | 1 | 22400-22402 | |
S | 280 | N280del | del | AAT | --- | 186 | 186 | 1 | 22400-22402 | |
S | 280 | N280D | nonsyn | Aat | Gat | 104 | 103 | 0.990385 | 22400-22402 | |
S | 280 | N280D | nonsyn | AaT | GaC | 104 | 1 | 0.00961538 | 22400-22402 | |
S | 280 | N280S | nonsyn | aAt | aGt | 86 | 84 | 0.976744 | 22400-22402 | |
S | 280 | N280S | nonsyn | AAt | TCt | 86 | 1 | 0.0116279 | 22400-22402 | |
S | 280 | N280S | nonsyn | aAT | aGC | 86 | 1 | 0.0116279 | 22400-22402 | |
S | 280 | N280I | nonsyn | aAt | aTt | 17 | 15 | 0.882353 | 22400-22402 | |
S | 280 | N280I | nonsyn | aAT | aTC | 17 | 2 | 0.117647 | 22400-22402 | |
S | 280 | N280K | nonsyn | aaT | aaA | 12 | 11 | 0.916667 | 22400-22402 | |
S | 280 | N280K | nonsyn | aaT | aaG | 12 | 1 | 0.0833333 | 22400-22402 | |
S | 280 | N280del1 | del | aaT | aa- | 10 | 5 | 0.5 | 22400-22402 | |
S | 280 | N280del1 | del | Aat | -at | 10 | 2 | 0.2 | 22400-22402 | |
S | 280 | N280del1 | del | AaT | Ga- | 10 | 2 | 0.2 | 22400-22402 | |
S | 280 | N280del1 | del | AaT | -aN | 10 | 1 | 0.1 | 22400-22402 | |
S | 280 | N280T | nonsyn | aAt | aCt | 9 | 8 | 0.888889 | 22400-22402 | |
S | 280 | N280T | nonsyn | aAT | aCG | 9 | 1 | 0.111111 | 22400-22402 | |
S | 280 | N280Y | nonsyn | Aat | Tat | 7 | 4 | 0.571429 | 22400-22402 | |
S | 280 | N280Y | nonsyn | AaT | TaC | 7 | 3 | 0.428571 | 22400-22402 | |
S | 280 | N280C | nonsyn | AAt | TGt | 5 | 5 | 1 | 22400-22402 | |
S | 280 | N280H | nonsyn | Aat | Cat | 3 | 3 | 1 | 22400-22402 | |
S | 280 | N280del2 | del | AAt | --t | 3 | 2 | 0.666667 | 22400-22402 | |
S | 280 | N280del2 | del | aAT | a-- | 3 | 1 | 0.333333 | 22400-22402 | |
S | 280 | N280G | nonsyn | AAt | GGt | 1 | 1 | 1 | 22400-22402 | |
S | 280 | N280Q | nonsyn | AaT | CaG | 1 | 1 | 1 | 22400-22402 | |
S | 280 | N280F | nonsyn | AAt | TTt | 1 | 1 | 1 | 22400-22402 | |
S | 280 | N280L | nonsyn | AAT | CTA | 1 | 1 | 1 | 22400-22402 | |
S | 280 | N280E | nonsyn | AaT | GaA | 1 | 1 | 1 | 22400-22402 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 280 | N280N | aaT | aaC | 486 | 486 | All | 0.000093 |
S | 280 | N280del | AAT | --- | 186 | 186 | All | 0.000036 |
S | 280 | N280N | aaT | aaC | 151 | 151 | B.1.575.2 | 0.725962 |
S | 280 | N280D | Aat | Gat | 103 | 104 | All | 0.00002 |
S | 280 | N280D | AaT | GaC | 1 | 104 | All | 0 |
S | 280 | N280N | aaT | aaC | 88 | 88 | AY.4.2 | 0.001909 |
S | 280 | N280S | aAt | aGt | 84 | 86 | All | 0.000016 |
S | 280 | N280S | AAt | TCt | 1 | 86 | All | 0 |
S | 280 | N280S | aAT | aGC | 1 | 86 | All | 0 |
S | 280 | N280N | aaT | aaC | 43 | 43 | AY.4 | 0.000067 |
S | 280 | N280D | Aat | Gat | 43 | 43 | B.1.1.7 | 0.000038 |
S | 280 | N280del | AAT | --- | 43 | 43 | B.1.1.7 | 0.000038 |
S | 280 | N280N | aaT | aaC | 28 | 28 | AY.44 | 0.00017 |
S | 280 | N280S | aAt | aGt | 28 | 28 | B.1.2 | 0.000247 |
S | 280 | N280N | aaT | aaC | 27 | 27 | B.1.2 | 0.000238 |
S | 280 | N280del | AAT | --- | 22 | 22 | B.1 | 0.000202 |
S | 280 | N280N | aaT | aaC | 18 | 18 | B.1.1.7 | 0.000016 |
S | 280 | N280I | aAt | aTt | 15 | 17 | All | 0.000003 |
S | 280 | N280I | aAT | aTC | 2 | 17 | All | 0 |
S | 280 | N280D | Aat | Gat | 14 | 14 | AY.44 | 0.000085 |
S | 280 | N280N | aaT | aaC | 14 | 14 | B.1.177 | 0.000184 |
S | 280 | N280del | AAT | --- | 13 | 13 | B.1.351 | 0.000386 |
S | 280 | N280K | aaT | aaA | 11 | 12 | All | 0.000002 |
S | 280 | N280K | aaT | aaG | 1 | 12 | All | 0 |
S | 280 | N280N | aaT | aaC | 11 | 11 | B.1.617.2 | 0.000041 |
S | 280 | N280del1 | aaT | aa- | 5 | 10 | All | 0.000001 |
S | 280 | N280del1 | Aat | -at | 2 | 10 | All | 0 |
S | 280 | N280del1 | AaT | Ga- | 2 | 10 | All | 0 |
S | 280 | N280del1 | AaT | -aN | 1 | 10 | All | 0 |
S | 280 | N280del | AAT | --- | 10 | 10 | AY.43 | 0.000044 |
S | 280 | N280S | aAt | aGt | 10 | 10 | B.1.1.7 | 0.000009 |
S | 280 | N280N | aaT | aaC | 10 | 10 | B.1.427 | 0.000505 |
S | 280 | N280D | Aat | Gat | 10 | 10 | B.1.617.2 | 0.000038 |
S | 280 | N280T | aAt | aCt | 8 | 9 | All | 0.000002 |
S | 280 | N280T | aAT | aCG | 1 | 9 | All | 0 |
S | 280 | N280N | aaT | aaC | 8 | 8 | AY.9.2 | 0.000294 |
S | 280 | N280del | AAT | --- | 8 | 8 | P.1 | 0.000126 |
S | 280 | N280Y | Aat | Tat | 4 | 7 | All | 0.000001 |
S | 280 | N280Y | AaT | TaC | 3 | 7 | All | 0.000001 |
S | 280 | N280del | AAT | --- | 7 | 7 | AY.29 | 0.00011 |
S | 280 | N280del | AAT | --- | 7 | 7 | B.1.525 | 0.000792 |
S | 280 | N280S | aAt | aGt | 6 | 6 | AY.4 | 0.000009 |
S | 280 | N280N | aaT | aaC | 6 | 6 | AY.42 | 0.000241 |
S | 280 | N280N | aaT | aaC | 6 | 6 | AY.47 | 0.000187 |
S | 280 | N280S | aAt | aGt | 6 | 6 | AY.54 | 0.000572 |
S | 280 | N280C | AAt | TGt | 5 | 5 | All | 0.000001 |
S | 280 | N280N | aaT | aaC | 5 | 5 | AY.103 | 0.000031 |
S | 280 | N280D | Aat | Gat | 5 | 5 | AY.119 | 0.000177 |
S | 280 | N280D | Aat | Gat | 5 | 5 | AY.43 | 0.000022 |
S | 280 | N280N | aaT | aaC | 5 | 5 | B.1.111 | 0.005875 |
S | 280 | N280S | aAt | aGt | 5 | 5 | B.1.177 | 0.000066 |
S | 280 | N280del | AAT | --- | 5 | 5 | B.1.617.2 | 0.000019 |
S | 280 | N280N | aaT | aaC | 4 | 4 | 0.222222 | |
S | 280 | N280Y | AaT | TaC | 2 | 4 | 0.111111 | |
S | 280 | N280Y | Aat | Tat | 2 | 4 | 0.111111 | |
S | 280 | N280C | AAt | TGt | 4 | 4 | AY.3 | 0.00004 |
S | 280 | N280N | aaT | aaC | 4 | 4 | AY.3 | 0.00004 |
S | 280 | N280N | aaT | aaC | 4 | 4 | B.1.1.280 | 0.012346 |
S | 280 | N280del | AAT | --- | 4 | 4 | B.1.2 | 0.000035 |
S | 280 | N280del | AAT | --- | 4 | 4 | B.1.351.2 | 0.00121 |
S | 280 | N280N | aaT | aaC | 4 | 4 | C.37 | 0.000464 |
S | 280 | N280H | Aat | Cat | 3 | 3 | All | 0.000001 |
S | 280 | N280del2 | AAt | --t | 2 | 3 | All | 0 |
S | 280 | N280del2 | aAT | a-- | 1 | 3 | All | 0 |
S | 280 | N280S | aAt | aGt | 3 | 3 | AY.23.1 | 0.001252 |
S | 280 | N280D | Aat | Gat | 3 | 3 | AY.25 | 0.000018 |
S | 280 | N280del | AAT | --- | 3 | 3 | AY.25 | 0.000018 |
S | 280 | N280N | aaT | aaC | 3 | 3 | AY.26 | 0.000085 |
S | 280 | N280del | AAT | --- | 3 | 3 | AY.3 | 0.00003 |
S | 280 | N280D | Aat | Gat | 3 | 3 | AY.4 | 0.000005 |
S | 280 | N280T | aAt | aCt | 3 | 3 | AY.4 | 0.000005 |
S | 280 | N280del | AAT | --- | 3 | 3 | AY.4 | 0.000005 |
S | 280 | N280N | aaT | aaC | 3 | 3 | AY.74 | 0.000347 |
S | 280 | N280S | aAt | aGt | 3 | 3 | B.1.1 | 0.000054 |
S | 280 | N280del1 | aaT | aa- | 2 | 3 | B.1.2 | 0.000018 |
S | 280 | N280del1 | Aat | -at | 1 | 3 | B.1.2 | 0.000009 |
S | 280 | N280S | aAt | aGt | 3 | 3 | B.1.617.2 | 0.000011 |
S | 280 | N280del | AAT | --- | 3 | 3 | P.1.15 | 0.000697 |
S | 280 | N280K | aaT | aaA | 2 | 2 | 0.111111 | |
S | 280 | N280del | AAT | --- | 2 | 2 | 0.111111 | |
S | 280 | N280D | Aat | Gat | 2 | 2 | A.2.5 | 0.000998 |
S | 280 | N280N | aaT | aaC | 2 | 2 | AY.100 | 0.000092 |
S | 280 | N280D | Aat | Gat | 1 | 2 | AY.102 | 0.000027 |
S | 280 | N280D | AaT | GaC | 1 | 2 | AY.102 | 0.000027 |
S | 280 | N280D | Aat | Gat | 2 | 2 | AY.103 | 0.000012 |
S | 280 | N280T | aAt | aCt | 2 | 2 | AY.43 | 0.000009 |
S | 280 | N280N | aaT | aaC | 2 | 2 | AY.43 | 0.000009 |
S | 280 | N280S | aAt | aGt | 1 | 2 | AY.46.6 | 0.000072 |
S | 280 | N280S | aAT | aGC | 1 | 2 | AY.46.6 | 0.000072 |
S | 280 | N280del2 | AAt | --t | 1 | 2 | AY.9.2 | 0.000037 |
S | 280 | N280del2 | aAT | a-- | 1 | 2 | AY.9.2 | 0.000037 |
S | 280 | N280N | aaT | aaC | 2 | 2 | AY.97 | 0.003401 |
S | 280 | N280N | aaT | aaC | 2 | 2 | B.1 | 0.000018 |
S | 280 | N280I | aAt | aTt | 2 | 2 | B.1 | 0.000018 |
S | 280 | N280D | Aat | Gat | 2 | 2 | B.1 | 0.000018 |
S | 280 | N280del | AAT | --- | 2 | 2 | B.1.1 | 0.000036 |
S | 280 | N280S | aAt | aGt | 2 | 2 | B.1.1.1 | 0.000653 |
S | 280 | N280N | aaT | aaC | 2 | 2 | B.1.1.25 | 0.001137 |
S | 280 | N280I | aAt | aTt | 2 | 2 | B.1.1.7 | 0.000002 |
S | 280 | N280I | aAt | aTt | 2 | 2 | B.1.2 | 0.000018 |
S | 280 | N280K | aaT | aaA | 1 | 2 | B.1.2 | 0.000009 |
S | 280 | N280K | aaT | aaG | 1 | 2 | B.1.2 | 0.000009 |
S | 280 | N280del | AAT | --- | 2 | 2 | B.1.260 | 0.006689 |
S | 280 | N280del | AAT | --- | 2 | 2 | B.1.456 | 0.006536 |
S | 280 | N280D | Aat | Gat | 2 | 2 | B.1.526 | 0.000047 |
S | 280 | N280del | AAT | --- | 2 | 2 | B.1.576 | 0.001813 |
S | 280 | N280N | aaT | aaC | 2 | 2 | B.1.617.1 | 0.000258 |
S | 280 | N280T | aAt | aCt | 1 | 2 | B.1.617.2 | 0.000004 |
S | 280 | N280T | aAT | aCG | 1 | 2 | B.1.617.2 | 0.000004 |
S | 280 | N280del | AAT | --- | 2 | 2 | B.1.620 | 0.001892 |
S | 280 | N280del | AAT | --- | 2 | 2 | B.1.621 | 0.000177 |
S | 280 | N280N | aaT | aaC | 2 | 2 | C.14 | 0.008658 |
S | 280 | N280S | aAt | aGt | 2 | 2 | D.2 | 0.00015 |
S | 280 | N280N | aaT | aaC | 2 | 2 | P.1 | 0.000032 |
S | 280 | N280del | AAT | --- | 1 | 1 | A | 0.000387 |
S | 280 | N280del | AAT | --- | 1 | 1 | A.2.5 | 0.000499 |
S | 280 | N280N | aaT | aaC | 1 | 1 | A.2.5 | 0.000499 |
S | 280 | N280F | AAt | TTt | 1 | 1 | All | 0 |
S | 280 | N280G | AAt | GGt | 1 | 1 | All | 0 |
S | 280 | N280E | AaT | GaA | 1 | 1 | All | 0 |
S | 280 | N280Q | AaT | CaG | 1 | 1 | All | 0 |
S | 280 | N280L | AAT | CTA | 1 | 1 | All | 0 |
S | 280 | N280del | AAT | --- | 1 | 1 | AY.101 | 0.00049 |
S | 280 | N280N | aaT | aaC | 1 | 1 | AY.102 | 0.000027 |
S | 280 | N280S | aAt | aGt | 1 | 1 | AY.103 | 0.000006 |
S | 280 | N280I | aAt | aTt | 1 | 1 | AY.103 | 0.000006 |
S | 280 | N280del | AAT | --- | 1 | 1 | AY.103 | 0.000006 |
S | 280 | N280H | Aat | Cat | 1 | 1 | AY.103 | 0.000006 |
S | 280 | N280del | AAT | --- | 1 | 1 | AY.108 | 0.001103 |
S | 280 | N280del | AAT | --- | 1 | 1 | AY.110 | 0.000113 |
S | 280 | N280S | aAt | aGt | 1 | 1 | AY.111 | 0.000183 |
S | 280 | N280del | AAT | --- | 1 | 1 | AY.113 | 0.000142 |
S | 280 | N280del | AAT | --- | 1 | 1 | AY.117 | 0.000085 |
S | 280 | N280I | aAt | aTt | 1 | 1 | AY.118 | 0.000063 |
S | 280 | N280del | AAT | --- | 1 | 1 | AY.118 | 0.000063 |
S | 280 | N280N | aaT | aaC | 1 | 1 | AY.120 | 0.000037 |
S | 280 | N280K | aaT | aaA | 1 | 1 | AY.23.1 | 0.000417 |
S | 280 | N280Y | Aat | Tat | 1 | 1 | AY.24 | 0.000431 |
S | 280 | N280T | aAt | aCt | 1 | 1 | AY.25 | 0.000006 |
S | 280 | N280del2 | AAt | --t | 1 | 1 | AY.25 | 0.000006 |
S | 280 | N280N | aaT | aaC | 1 | 1 | AY.29.1 | 0.000221 |
S | 280 | N280D | Aat | Gat | 1 | 1 | AY.3 | 0.00001 |
S | 280 | N280S | aAt | aGt | 1 | 1 | AY.3 | 0.00001 |
S | 280 | N280N | aaT | aaC | 1 | 1 | AY.3.1 | 0.000085 |
S | 280 | N280del | AAT | --- | 1 | 1 | AY.33 | 0.000067 |
S | 280 | N280del | AAT | --- | 1 | 1 | AY.36 | 0.000148 |
S | 280 | N280D | Aat | Gat | 1 | 1 | AY.39 | 0.000025 |
S | 280 | N280H | Aat | Cat | 1 | 1 | AY.39 | 0.000025 |
S | 280 | N280N | aaT | aaC | 1 | 1 | AY.39 | 0.000025 |
S | 280 | N280H | Aat | Cat | 1 | 1 | AY.4.2 | 0.000022 |
S | 280 | N280N | aaT | aaC | 1 | 1 | AY.4.5 | 0.000107 |
S | 280 | N280del | AAT | --- | 1 | 1 | AY.42 | 0.00004 |
S | 280 | N280del1 | AaT | Ga- | 1 | 1 | AY.43 | 0.000004 |
S | 280 | N280F | AAt | TTt | 1 | 1 | AY.43 | 0.000004 |
S | 280 | N280del | AAT | --- | 1 | 1 | AY.44 | 0.000006 |
S | 280 | N280S | aAt | aGt | 1 | 1 | AY.44 | 0.000006 |
S | 280 | N280D | Aat | Gat | 1 | 1 | AY.46.5 | 0.000198 |
S | 280 | N280Q | AaT | CaG | 1 | 1 | AY.46.6 | 0.000072 |
S | 280 | N280I | aAT | aTC | 1 | 1 | AY.46.6 | 0.000072 |
S | 280 | N280del | AAT | --- | 1 | 1 | AY.47 | 0.000031 |
S | 280 | N280N | aaT | aaC | 1 | 1 | AY.5 | 0.000021 |
S | 280 | N280S | aAt | aGt | 1 | 1 | AY.51 | 0.000909 |
S | 280 | N280N | aaT | aaC | 1 | 1 | AY.53 | 0.000288 |
S | 280 | N280D | Aat | Gat | 1 | 1 | AY.55 | 0.000917 |
S | 280 | N280del | AAT | --- | 1 | 1 | AY.59 | 0.00053 |
S | 280 | N280N | aaT | aaC | 1 | 1 | AY.59 | 0.00053 |
S | 280 | N280K | aaT | aaA | 1 | 1 | AY.61 | 0.000105 |
S | 280 | N280del | AAT | --- | 1 | 1 | AY.61 | 0.000105 |
S | 280 | N280del1 | AaT | Ga- | 1 | 1 | AY.67 | 0.000464 |
S | 280 | N280del | AAT | --- | 1 | 1 | AY.67 | 0.000464 |
S | 280 | N280N | aaT | aaC | 1 | 1 | AY.7 | 0.000196 |
S | 280 | N280S | aAt | aGt | 1 | 1 | AY.75 | 0.000056 |
S | 280 | N280del | AAT | --- | 1 | 1 | AY.84 | 0.000437 |
S | 280 | N280del | AAT | --- | 1 | 1 | AY.9 | 0.000068 |
S | 280 | N280del | AAT | --- | 1 | 1 | AY.9.2 | 0.000037 |
S | 280 | N280D | Aat | Gat | 1 | 1 | AY.9.2.1 | 0.001976 |
S | 280 | N280del | AAT | --- | 1 | 1 | AY.90 | 0.000684 |
S | 280 | N280D | Aat | Gat | 1 | 1 | AY.91 | 0.00073 |
S | 280 | N280del | AAT | --- | 1 | 1 | AY.98.1 | 0.000048 |
S | 280 | N280D | Aat | Gat | 1 | 1 | AY.98.1 | 0.000048 |
S | 280 | N280del | AAT | --- | 1 | 1 | AY.99 | 0.001049 |
S | 280 | N280del | AAT | --- | 1 | 1 | B | 0.000128 |
S | 280 | N280Y | Aat | Tat | 1 | 1 | B.1 | 0.000009 |
S | 280 | N280K | aaT | aaA | 1 | 1 | B.1 | 0.000009 |
S | 280 | N280S | aAt | aGt | 1 | 1 | B.1 | 0.000009 |
S | 280 | N280E | AaT | GaA | 1 | 1 | B.1.1 | 0.000018 |
S | 280 | N280N | aaT | aaC | 1 | 1 | B.1.1 | 0.000018 |
S | 280 | N280I | aAt | aTt | 1 | 1 | B.1.1 | 0.000018 |
S | 280 | N280N | aaT | aaC | 1 | 1 | B.1.1.10 | 0.001115 |
S | 280 | N280N | aaT | aaC | 1 | 1 | B.1.1.189 | 0.001513 |
S | 280 | N280N | aaT | aaC | 1 | 1 | B.1.1.218 | 0.007692 |
S | 280 | N280del | AAT | --- | 1 | 1 | B.1.1.301 | 0.001179 |
S | 280 | N280S | aAt | aGt | 1 | 1 | B.1.1.351 | 0.002793 |
S | 280 | N280N | aaT | aaC | 1 | 1 | B.1.1.420 | 0.001006 |
S | 280 | N280N | aaT | aaC | 1 | 1 | B.1.1.48 | 0.002874 |
S | 280 | N280N | aaT | aaC | 1 | 1 | B.1.1.519 | 0.00004 |
S | 280 | N280del1 | aaT | aa- | 1 | 1 | B.1.1.7 | 0.000001 |
S | 280 | N280L | AAT | CTA | 1 | 1 | B.1.1.7 | 0.000001 |
S | 280 | N280C | AAt | TGt | 1 | 1 | B.1.1.7 | 0.000001 |
S | 280 | N280Y | AaT | TaC | 1 | 1 | B.1.1.7 | 0.000001 |
S | 280 | N280I | aAt | aTt | 1 | 1 | B.1.1.70 | 0.000341 |
S | 280 | N280D | Aat | Gat | 1 | 1 | B.1.160 | 0.000031 |
S | 280 | N280del | AAT | --- | 1 | 1 | B.1.177 | 0.000013 |
S | 280 | N280I | aAt | aTt | 1 | 1 | B.1.177.15 | 0.000631 |
S | 280 | N280N | aaT | aaC | 1 | 1 | B.1.177.45 | 0.000381 |
S | 280 | N280del | AAT | --- | 1 | 1 | B.1.177.52 | 0.001757 |
S | 280 | N280N | aaT | aaC | 1 | 1 | B.1.177.73 | 0.000566 |
S | 280 | N280del | AAT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
S | 280 | N280K | aaT | aaA | 1 | 1 | B.1.221 | 0.000071 |
S | 280 | N280N | aaT | aaC | 1 | 1 | B.1.221 | 0.000071 |
S | 280 | N280del1 | aaT | aa- | 1 | 1 | B.1.234 | 0.000132 |
S | 280 | N280I | aAt | aTt | 1 | 1 | B.1.243 | 0.00007 |
S | 280 | N280D | Aat | Gat | 1 | 1 | B.1.243 | 0.00007 |
S | 280 | N280G | AAt | GGt | 1 | 1 | B.1.258 | 0.000067 |
S | 280 | N280N | aaT | aaC | 1 | 1 | B.1.311 | 0.000275 |
S | 280 | N280N | aaT | aaC | 1 | 1 | B.1.344 | 0.008197 |
S | 280 | N280del1 | AaT | -aN | 1 | 1 | B.1.351 | 0.00003 |
S | 280 | N280K | aaT | aaA | 1 | 1 | B.1.351 | 0.00003 |
S | 280 | N280S | aAt | aGt | 1 | 1 | B.1.351 | 0.00003 |
S | 280 | N280del | AAT | --- | 1 | 1 | B.1.36 | 0.000146 |
S | 280 | N280del1 | aaT | aa- | 1 | 1 | B.1.369 | 0.000285 |
S | 280 | N280del | AAT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
S | 280 | N280N | aaT | aaC | 1 | 1 | B.1.429 | 0.000024 |
S | 280 | N280S | aAt | aGt | 1 | 1 | B.1.466.2 | 0.000391 |
S | 280 | N280D | Aat | Gat | 1 | 1 | B.1.466.2 | 0.000391 |
S | 280 | N280I | aAt | aTt | 1 | 1 | B.1.501 | 0.007353 |
S | 280 | N280N | aaT | aaC | 1 | 1 | B.1.526 | 0.000024 |
S | 280 | N280S | aAt | aGt | 1 | 1 | B.1.526 | 0.000024 |
S | 280 | N280I | aAT | aTC | 1 | 1 | B.1.571 | 0.009709 |
S | 280 | N280S | aAt | aGt | 1 | 1 | B.1.582 | 0.000491 |
S | 280 | N280del | AAT | --- | 1 | 1 | B.1.609 | 0.000479 |
S | 280 | N280del | AAT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
S | 280 | N280del1 | Aat | -at | 1 | 1 | B.1.617.2 | 0.000004 |
S | 280 | N280K | aaT | aaA | 1 | 1 | B.1.617.2 | 0.000004 |
S | 280 | N280del | AAT | --- | 1 | 1 | B.1.621.1 | 0.000506 |
S | 280 | N280T | aAt | aCt | 1 | 1 | B.1.628 | 0.000352 |
S | 280 | N280del | AAT | --- | 1 | 1 | B.1.630 | 0.005236 |
S | 280 | N280N | aaT | aaC | 1 | 1 | B.3 | 0.000831 |
S | 280 | N280I | aAt | aTt | 1 | 1 | B.6.6 | 0.000889 |
S | 280 | N280del | AAT | --- | 1 | 1 | C.1.2 | 0.004255 |
S | 280 | N280del | AAT | --- | 1 | 1 | C.37 | 0.000116 |
S | 280 | N280N | aaT | aaC | 1 | 1 | D.2 | 0.000075 |
S | 280 | N280K | aaT | aaA | 1 | 1 | D.2 | 0.000075 |
S | 280 | N280I | aAt | aTt | 1 | 1 | D.2 | 0.000075 |
S | 280 | N280S | aAt | aGt | 1 | 1 | N.4 | 0.004255 |
S | 280 | N280S | AAt | TCt | 1 | 1 | P.1.17 | 0.000162 |
S | 280 | N280D | Aat | Gat | 1 | 1 | P.2 | 0.000187 |
S | 280 | N280N | aaT | aaC | 1 | 1 | Q.1 | 0.000126 |
S | 280 | N280K | aaT | aaA | 1 | 1 | Q.3 | 0.000145 |
S | 280 | N280del | AAT | --- | 1 | 1 | Q.4 | 0.000455 |
S | 280 | N280S | aAt | aGt | 1 | 1 | Q.8 | 0.000165 |
S | 280 | N280S | aAt | aGt | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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