CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 280

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S280N280NsynaaTaaC486486122400-22402
S280N280deldelAAT---186186122400-22402
S280N280DnonsynAatGat1041030.99038522400-22402
S280N280DnonsynAaTGaC10410.0096153822400-22402
S280N280SnonsynaAtaGt86840.97674422400-22402
S280N280SnonsynAAtTCt8610.011627922400-22402
S280N280SnonsynaATaGC8610.011627922400-22402
S280N280InonsynaAtaTt17150.88235322400-22402
S280N280InonsynaATaTC1720.11764722400-22402
S280N280KnonsynaaTaaA12110.91666722400-22402
S280N280KnonsynaaTaaG1210.083333322400-22402
S280N280del1delaaTaa-1050.522400-22402
S280N280del1delAat-at1020.222400-22402
S280N280del1delAaTGa-1020.222400-22402
S280N280del1delAaT-aN1010.122400-22402
S280N280TnonsynaAtaCt980.88888922400-22402
S280N280TnonsynaATaCG910.11111122400-22402
S280N280YnonsynAatTat740.57142922400-22402
S280N280YnonsynAaTTaC730.42857122400-22402
S280N280CnonsynAAtTGt55122400-22402
S280N280HnonsynAatCat33122400-22402
S280N280del2delAAt--t320.66666722400-22402
S280N280del2delaATa--310.33333322400-22402
S280N280GnonsynAAtGGt11122400-22402
S280N280QnonsynAaTCaG11122400-22402
S280N280FnonsynAAtTTt11122400-22402
S280N280LnonsynAATCTA11122400-22402
S280N280EnonsynAaTGaA11122400-22402

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S280N280NaaTaaC486486All0.000093
S280N280delAAT---186186All0.000036
S280N280NaaTaaC151151B.1.575.20.725962
S280N280DAatGat103104All0.00002
S280N280DAaTGaC1104All0
S280N280NaaTaaC8888AY.4.20.001909
S280N280SaAtaGt8486All0.000016
S280N280SAAtTCt186All0
S280N280SaATaGC186All0
S280N280NaaTaaC4343AY.40.000067
S280N280DAatGat4343B.1.1.70.000038
S280N280delAAT---4343B.1.1.70.000038
S280N280NaaTaaC2828AY.440.00017
S280N280SaAtaGt2828B.1.20.000247
S280N280NaaTaaC2727B.1.20.000238
S280N280delAAT---2222B.10.000202
S280N280NaaTaaC1818B.1.1.70.000016
S280N280IaAtaTt1517All0.000003
S280N280IaATaTC217All0
S280N280DAatGat1414AY.440.000085
S280N280NaaTaaC1414B.1.1770.000184
S280N280delAAT---1313B.1.3510.000386
S280N280KaaTaaA1112All0.000002
S280N280KaaTaaG112All0
S280N280NaaTaaC1111B.1.617.20.000041
S280N280del1aaTaa-510All0.000001
S280N280del1Aat-at210All0
S280N280del1AaTGa-210All0
S280N280del1AaT-aN110All0
S280N280delAAT---1010AY.430.000044
S280N280SaAtaGt1010B.1.1.70.000009
S280N280NaaTaaC1010B.1.4270.000505
S280N280DAatGat1010B.1.617.20.000038
S280N280TaAtaCt89All0.000002
S280N280TaATaCG19All0
S280N280NaaTaaC88AY.9.20.000294
S280N280delAAT---88P.10.000126
S280N280YAatTat47All0.000001
S280N280YAaTTaC37All0.000001
S280N280delAAT---77AY.290.00011
S280N280delAAT---77B.1.5250.000792
S280N280SaAtaGt66AY.40.000009
S280N280NaaTaaC66AY.420.000241
S280N280NaaTaaC66AY.470.000187
S280N280SaAtaGt66AY.540.000572
S280N280CAAtTGt55All0.000001
S280N280NaaTaaC55AY.1030.000031
S280N280DAatGat55AY.1190.000177
S280N280DAatGat55AY.430.000022
S280N280NaaTaaC55B.1.1110.005875
S280N280SaAtaGt55B.1.1770.000066
S280N280delAAT---55B.1.617.20.000019
S280N280NaaTaaC440.222222
S280N280YAaTTaC240.111111
S280N280YAatTat240.111111
S280N280CAAtTGt44AY.30.00004
S280N280NaaTaaC44AY.30.00004
S280N280NaaTaaC44B.1.1.2800.012346
S280N280delAAT---44B.1.20.000035
S280N280delAAT---44B.1.351.20.00121
S280N280NaaTaaC44C.370.000464
S280N280HAatCat33All0.000001
S280N280del2AAt--t23All0
S280N280del2aATa--13All0
S280N280SaAtaGt33AY.23.10.001252
S280N280DAatGat33AY.250.000018
S280N280delAAT---33AY.250.000018
S280N280NaaTaaC33AY.260.000085
S280N280delAAT---33AY.30.00003
S280N280DAatGat33AY.40.000005
S280N280TaAtaCt33AY.40.000005
S280N280delAAT---33AY.40.000005
S280N280NaaTaaC33AY.740.000347
S280N280SaAtaGt33B.1.10.000054
S280N280del1aaTaa-23B.1.20.000018
S280N280del1Aat-at13B.1.20.000009
S280N280SaAtaGt33B.1.617.20.000011
S280N280delAAT---33P.1.150.000697
S280N280KaaTaaA220.111111
S280N280delAAT---220.111111
S280N280DAatGat22A.2.50.000998
S280N280NaaTaaC22AY.1000.000092
S280N280DAatGat12AY.1020.000027
S280N280DAaTGaC12AY.1020.000027
S280N280DAatGat22AY.1030.000012
S280N280TaAtaCt22AY.430.000009
S280N280NaaTaaC22AY.430.000009
S280N280SaAtaGt12AY.46.60.000072
S280N280SaATaGC12AY.46.60.000072
S280N280del2AAt--t12AY.9.20.000037
S280N280del2aATa--12AY.9.20.000037
S280N280NaaTaaC22AY.970.003401
S280N280NaaTaaC22B.10.000018
S280N280IaAtaTt22B.10.000018
S280N280DAatGat22B.10.000018
S280N280delAAT---22B.1.10.000036
S280N280SaAtaGt22B.1.1.10.000653
S280N280NaaTaaC22B.1.1.250.001137
S280N280IaAtaTt22B.1.1.70.000002
S280N280IaAtaTt22B.1.20.000018
S280N280KaaTaaA12B.1.20.000009
S280N280KaaTaaG12B.1.20.000009
S280N280delAAT---22B.1.2600.006689
S280N280delAAT---22B.1.4560.006536
S280N280DAatGat22B.1.5260.000047
S280N280delAAT---22B.1.5760.001813
S280N280NaaTaaC22B.1.617.10.000258
S280N280TaAtaCt12B.1.617.20.000004
S280N280TaATaCG12B.1.617.20.000004
S280N280delAAT---22B.1.6200.001892
S280N280delAAT---22B.1.6210.000177
S280N280NaaTaaC22C.140.008658
S280N280SaAtaGt22D.20.00015
S280N280NaaTaaC22P.10.000032
S280N280delAAT---11A0.000387
S280N280delAAT---11A.2.50.000499
S280N280NaaTaaC11A.2.50.000499
S280N280FAAtTTt11All0
S280N280GAAtGGt11All0
S280N280EAaTGaA11All0
S280N280QAaTCaG11All0
S280N280LAATCTA11All0
S280N280delAAT---11AY.1010.00049
S280N280NaaTaaC11AY.1020.000027
S280N280SaAtaGt11AY.1030.000006
S280N280IaAtaTt11AY.1030.000006
S280N280delAAT---11AY.1030.000006
S280N280HAatCat11AY.1030.000006
S280N280delAAT---11AY.1080.001103
S280N280delAAT---11AY.1100.000113
S280N280SaAtaGt11AY.1110.000183
S280N280delAAT---11AY.1130.000142
S280N280delAAT---11AY.1170.000085
S280N280IaAtaTt11AY.1180.000063
S280N280delAAT---11AY.1180.000063
S280N280NaaTaaC11AY.1200.000037
S280N280KaaTaaA11AY.23.10.000417
S280N280YAatTat11AY.240.000431
S280N280TaAtaCt11AY.250.000006
S280N280del2AAt--t11AY.250.000006
S280N280NaaTaaC11AY.29.10.000221
S280N280DAatGat11AY.30.00001
S280N280SaAtaGt11AY.30.00001
S280N280NaaTaaC11AY.3.10.000085
S280N280delAAT---11AY.330.000067
S280N280delAAT---11AY.360.000148
S280N280DAatGat11AY.390.000025
S280N280HAatCat11AY.390.000025
S280N280NaaTaaC11AY.390.000025
S280N280HAatCat11AY.4.20.000022
S280N280NaaTaaC11AY.4.50.000107
S280N280delAAT---11AY.420.00004
S280N280del1AaTGa-11AY.430.000004
S280N280FAAtTTt11AY.430.000004
S280N280delAAT---11AY.440.000006
S280N280SaAtaGt11AY.440.000006
S280N280DAatGat11AY.46.50.000198
S280N280QAaTCaG11AY.46.60.000072
S280N280IaATaTC11AY.46.60.000072
S280N280delAAT---11AY.470.000031
S280N280NaaTaaC11AY.50.000021
S280N280SaAtaGt11AY.510.000909
S280N280NaaTaaC11AY.530.000288
S280N280DAatGat11AY.550.000917
S280N280delAAT---11AY.590.00053
S280N280NaaTaaC11AY.590.00053
S280N280KaaTaaA11AY.610.000105
S280N280delAAT---11AY.610.000105
S280N280del1AaTGa-11AY.670.000464
S280N280delAAT---11AY.670.000464
S280N280NaaTaaC11AY.70.000196
S280N280SaAtaGt11AY.750.000056
S280N280delAAT---11AY.840.000437
S280N280delAAT---11AY.90.000068
S280N280delAAT---11AY.9.20.000037
S280N280DAatGat11AY.9.2.10.001976
S280N280delAAT---11AY.900.000684
S280N280DAatGat11AY.910.00073
S280N280delAAT---11AY.98.10.000048
S280N280DAatGat11AY.98.10.000048
S280N280delAAT---11AY.990.001049
S280N280delAAT---11B0.000128
S280N280YAatTat11B.10.000009
S280N280KaaTaaA11B.10.000009
S280N280SaAtaGt11B.10.000009
S280N280EAaTGaA11B.1.10.000018
S280N280NaaTaaC11B.1.10.000018
S280N280IaAtaTt11B.1.10.000018
S280N280NaaTaaC11B.1.1.100.001115
S280N280NaaTaaC11B.1.1.1890.001513
S280N280NaaTaaC11B.1.1.2180.007692
S280N280delAAT---11B.1.1.3010.001179
S280N280SaAtaGt11B.1.1.3510.002793
S280N280NaaTaaC11B.1.1.4200.001006
S280N280NaaTaaC11B.1.1.480.002874
S280N280NaaTaaC11B.1.1.5190.00004
S280N280del1aaTaa-11B.1.1.70.000001
S280N280LAATCTA11B.1.1.70.000001
S280N280CAAtTGt11B.1.1.70.000001
S280N280YAaTTaC11B.1.1.70.000001
S280N280IaAtaTt11B.1.1.700.000341
S280N280DAatGat11B.1.1600.000031
S280N280delAAT---11B.1.1770.000013
S280N280IaAtaTt11B.1.177.150.000631
S280N280NaaTaaC11B.1.177.450.000381
S280N280delAAT---11B.1.177.520.001757
S280N280NaaTaaC11B.1.177.730.000566
S280N280delAAT---11B.1.177.830.001481
S280N280KaaTaaA11B.1.2210.000071
S280N280NaaTaaC11B.1.2210.000071
S280N280del1aaTaa-11B.1.2340.000132
S280N280IaAtaTt11B.1.2430.00007
S280N280DAatGat11B.1.2430.00007
S280N280GAAtGGt11B.1.2580.000067
S280N280NaaTaaC11B.1.3110.000275
S280N280NaaTaaC11B.1.3440.008197
S280N280del1AaT-aN11B.1.3510.00003
S280N280KaaTaaA11B.1.3510.00003
S280N280SaAtaGt11B.1.3510.00003
S280N280delAAT---11B.1.360.000146
S280N280del1aaTaa-11B.1.3690.000285
S280N280delAAT---11B.1.416.10.001563
S280N280NaaTaaC11B.1.4290.000024
S280N280SaAtaGt11B.1.466.20.000391
S280N280DAatGat11B.1.466.20.000391
S280N280IaAtaTt11B.1.5010.007353
S280N280NaaTaaC11B.1.5260.000024
S280N280SaAtaGt11B.1.5260.000024
S280N280IaATaTC11B.1.5710.009709
S280N280SaAtaGt11B.1.5820.000491
S280N280delAAT---11B.1.6090.000479
S280N280delAAT---11B.1.617.10.000129
S280N280del1Aat-at11B.1.617.20.000004
S280N280KaaTaaA11B.1.617.20.000004
S280N280delAAT---11B.1.621.10.000506
S280N280TaAtaCt11B.1.6280.000352
S280N280delAAT---11B.1.6300.005236
S280N280NaaTaaC11B.30.000831
S280N280IaAtaTt11B.6.60.000889
S280N280delAAT---11C.1.20.004255
S280N280delAAT---11C.370.000116
S280N280NaaTaaC11D.20.000075
S280N280KaaTaaA11D.20.000075
S280N280IaAtaTt11D.20.000075
S280N280SaAtaGt11N.40.004255
S280N280SAAtTCt11P.1.170.000162
S280N280DAatGat11P.20.000187
S280N280NaaTaaC11Q.10.000126
S280N280KaaTaaA11Q.30.000145
S280N280delAAT---11Q.40.000455
S280N280SaAtaGt11Q.80.000165
S280N280SaAtaGt11R.10.00009