CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 272

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S272P272LnonsyncCtcTt11297112670.99734422376-22378
S272P272LnonsyncCTcTC11297250.0022129822376-22378
S272P272LnonsyncCTcTG1129730.00026555722376-22378
S272P272LnonsynCCTTTA1129710.000088519122376-22378
S272P272LnonsyncCTcTA1129710.000088519122376-22378
S272P272SnonsynCctTct6946930.99855922376-22378
S272P272SnonsynCcTTcA69410.0014409222376-22378
S272P272deldelCCT---208208122376-22378
S272P272HnonsyncCtcAt1821790.98351622376-22378
S272P272HnonsyncCTcAC18230.016483522376-22378
S272P272PsynccTccC115920.822376-22378
S272P272PsynccTccA115160.1391322376-22378
S272P272PsynccTccG11570.060869622376-22378
S272P272TnonsynCctAct79780.98734222376-22378
S272P272TnonsynCcTAcA7910.012658222376-22378
S272P272FnonsynCCtTTt3636122376-22378
S272P272RnonsyncCtcGt1616122376-22378
S272P272AnonsynCctGct540.822376-22378
S272P272AnonsynCcTGcC510.222376-22378
S272P272del1delCct-ct320.66666722376-22378
S272P272del1delccTcc-310.33333322376-22378
S272P272QnonsyncCTcAA22122376-22378
S272P272InonsynCCtATt210.522376-22378
S272P272InonsynCCTATA210.522376-22378
S272P272KnonsynCCTAAA11122376-22378
S272P272VnonsynCCtGTt11122376-22378
S272P272NnonsynCCtAAt11122376-22378

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S272P272LcCtcTt1126711297All0.002155
S272P272LcCTcTC2511297All0.000005
S272P272LcCTcTG311297All0.000001
S272P272LcCTcTA111297All0
S272P272LCCTTTA111297All0
S272P272LcCtcTt57265726B.1.1770.075398
S272P272LcCtcTt20682068B.1.177.820.987112
S272P272LcCtcTt13271327B.1.177.870.965793
S272P272SCctTct693694All0.000133
S272P272SCcTTcA1694All0
S272P272LcCtcTt675675B.1.177.831
S272P272LcCtcTt389389AY.39.10.01541
S272P272LcCtcTt201209B.1.1.70.00018
S272P272LcCTcTC7209B.1.1.70.000006
S272P272LCCTTTA1209B.1.1.70.000001
S272P272delCCT---208208All0.00004
S272P272HcCtcAt179182All0.000034
S272P272HcCTcAC3182All0.000001
S272P272SCctTct171171B.1.617.20.000644
S272P272SCctTct169170B.1.1.70.000151
S272P272SCcTTcA1170B.1.1.70.000001
S272P272LcCtcTt141141B.1.177.840.94
S272P272PccTccC92115All0.000018
S272P272PccTccA16115All0.000003
S272P272PccTccG7115All0.000001
S272P272SCctTct8787AY.40.000135
S272P272LcCtcTt8080B.1.177.880.987654
S272P272TCctAct7879All0.000015
S272P272TCcTAcA179All0
S272P272LcCtcTt7878Q.20.047853
S272P272SCctTct7575AY.1030.000466
S272P272LcCtcTt7274B.10.000659
S272P272LcCTcTC274B.10.000018
S272P272delCCT---4949B.1.1.70.000044
S272P272LcCtcTt4040B.1.177.890.97561
S272P272HcCtcAt3838B.1.4290.000894
S272P272FCCtTTt3636All0.000007
S272P272LcCtcTt3333AY.40.000051
S272P272FCCtTTt3333B.1.1770.000435
S272P272LcCtcTt3333B.1.177.100.028973
S272P272LcCtcTt2929AY.250.000174
S272P272HcCtcAt2626C.160.027572
S272P272SCctTct2323AY.430.000102
S272P272delCCT---2222B.10.000202
S272P272SCctTct1919AY.30.000189
S272P272HcCtcAt1919AY.980.001501
S272P272LcCtcTt1919B.1.177.690.02819
S272P272HcCtcAt1818B.10.000165
S272P272LcCtcTt1818B.1.177.160.01196
S272P272TCctAct1717AY.1030.000106
S272P272SCctTct1717AY.250.000102
S272P272TCctAct1617B.1.1.70.000014
S272P272TCcTAcA117B.1.1.70.000001
S272P272LcCtcTt1517B.1.617.20.000056
S272P272LcCTcTA117B.1.617.20.000004
S272P272LcCTcTG117B.1.617.20.000004
S272P272RcCtcGt1616All0.000003
S272P272LcCtcTt1616AY.430.000071
S272P272LcCtcTt1616B.1.1600.000499
S272P272LcCtcTt1216B.1.4290.000282
S272P272LcCTcTC416B.1.4290.000094
S272P272HcCtcAt1414B.1.1.70.000013
S272P272PccTccC1114B.1.1.70.00001
S272P272PccTccA214B.1.1.70.000002
S272P272PccTccG114B.1.1.70.000001
S272P272delCCT---1414B.1.3510.000416
S272P272HcCtcAt1314B.1.617.20.000049
S272P272HcCTcAC114B.1.617.20.000004
S272P272delCCT---1313AY.430.000058
S272P272PccTccC1313AY.99.20.001198
S272P272LcCtcTt1012AY.260.000283
S272P272LcCTcTC212AY.260.000057
S272P272HcCtcAt1212AY.40.000019
S272P272LcCtcTt1212AY.4.20.00026
S272P272LcCtcTt1112AY.46.60.000794
S272P272LcCTcTG112AY.46.60.000072
S272P272SCctTct1212AY.470.000373
S272P272LcCtcTt1111AY.1030.000068
S272P272LcCtcTt1111AY.30.000109
S272P272LcCtcTt1111B.1.10.0002
S272P272LcCtcTt1011B.1.3510.000297
S272P272LcCTcTC111B.1.3510.00003
S272P272PccTccC1010AY.30.000099
S272P272PccTccC99B.10.000082
S272P272LcCtcTt88AY.290.000126
S272P272LcCtcTt88B.1.177.330.013158
S272P272PccTccC88B.1.20.00007
S272P272delCCT---88B.1.617.20.00003
S272P272delCCT---88P.10.000126
S272P272LcCtcTt77AY.1160.002007
S272P272SCctTct77AY.390.000173
S272P272PccTccC47AY.390.000099
S272P272PccTccA37AY.390.000074
S272P272HcCtcAt77AY.4.20.000152
S272P272LcCtcTt77B.1.177.120.001062
S272P272LcCtcTt77B.1.4040.009115
S272P272delCCT---77B.1.5250.000792
S272P272delCCT---66AY.290.000095
S272P272HcCtcAt56AY.430.000022
S272P272HcCTcAC16AY.430.000004
S272P272SCctTct66AY.440.000037
S272P272SCctTct66AY.50.000124
S272P272SCctTct66AY.540.000572
S272P272SCctTct66B.10.000055
S272P272LcCtcTt66B.1.1.2630.009346
S272P272LcCtcTt66B.1.177.230.019417
S272P272LcCtcTt46B.1.20.000035
S272P272LcCTcTC26B.1.20.000018
S272P272RcCtcGt66B.1.617.20.000023
S272P272ACctGct45All0.000001
S272P272ACcTGcC15All0
S272P272PccTccA45AY.250.000024
S272P272PccTccC15AY.250.000006
S272P272SCctTct55AY.3.10.000426
S272P272TCctAct55AY.60.000206
S272P272LcCtcTt55B.1.177.440.002595
S272P272delCCT---55B.1.351.20.001513
S272P272LcCtcTt55B.1.5260.000118
S272P272PccTccC35B.1.617.20.000011
S272P272PccTccA15B.1.617.20.000004
S272P272PccTccG15B.1.617.20.000004
S272P272LcCtcTt55Q.80.000825
S272P272HcCtcAt44AY.1030.000025
S272P272PccTccC44AY.1030.000025
S272P272TCctAct44AY.30.00004
S272P272LcCtcTt44AY.3.10.000341
S272P272LcCtcTt44AY.39.20.006163
S272P272PccTccC34AY.40.000005
S272P272PccTccA14AY.40.000002
S272P272TCctAct44AY.440.000024
S272P272SCctTct44AY.60.000165
S272P272LcCtcTt44AY.7.10.000451
S272P272SCctTct44AY.770.00451
S272P272LcCtcTt34B.1.1.2140.000166
S272P272LcCTcTC14B.1.1.2140.000055
S272P272LcCtcTt44B.1.1.630.001543
S272P272LcCtcTt44B.1.160.300.011905
S272P272LcCtcTt44B.1.177.310.045977
S272P272LcCtcTt44B.1.177.60.003906
S272P272LcCtcTt44B.1.177.650.002661
S272P272SCctTct44B.1.177.810.000757
S272P272TCctAct44B.1.617.20.000015
S272P272delCCT---44B.1.6210.000354
S272P272SCctTct44B.1.9.40.02454
S272P272delCCT---44P.1.150.000929
S272P272SCctTct33A.2.5.20.004717
S272P272del1Cct-ct23All0
S272P272del1ccTcc-13All0
S272P272SCctTct33AY.1020.00008
S272P272LcCtcTt33AY.1210.000406
S272P272delCCT---33AY.250.000018
S272P272delCCT---33AY.30.00003
S272P272LcCtcTt23AY.440.000012
S272P272LcCTcTG13AY.440.000006
S272P272LcCtcTt23AY.590.001059
S272P272LcCTcTC13AY.590.00053
S272P272LcCtcTt33AY.98.10.000145
S272P272delCCT---33B.1.10.000054
S272P272LcCtcTt33B.1.177.170.002463
S272P272LcCtcTt33B.1.177.630.008108
S272P272LcCtcTt33B.1.177.730.001699
S272P272LcCtcTt33B.1.177.810.000568
S272P272LcCtcTt33B.1.177.860.00055
S272P272delCCT---33B.1.20.000026
S272P272PccTccC33B.1.2430.000209
S272P272LcCtcTt23B.1.2430.000139
S272P272LcCTcTC13B.1.2430.00007
S272P272SCctTct33B.1.360.000438
S272P272LcCTcTC23B.1.3960.001411
S272P272LcCtcTt13B.1.3960.000706
S272P272SCctTct33B.1.5260.000071
S272P272LcCtcTt220.111111
S272P272delCCT---220.111111
S272P272QcCTcAA22All0
S272P272ICCTATA12All0
S272P272ICCtATt12All0
S272P272SCctTct22AY.1000.000092
S272P272TCctAct22AY.1000.000092
S272P272HcCtcAt22AY.1020.000053
S272P272delCCT---22AY.1020.000053
S272P272LcCtcTt22AY.1140.000462
S272P272PccTccC22AY.1160.000574
S272P272SCctTct22AY.120.000632
S272P272SCctTct22AY.1200.000074
S272P272SCctTct22AY.200.000078
S272P272LcCtcTt22AY.200.000078
S272P272HcCtcAt22AY.250.000012
S272P272SCctTct22AY.260.000057
S272P272SCctTct22AY.330.000134
S272P272SCctTct22AY.360.000296
S272P272LcCtcTt22AY.390.000049
S272P272HcCtcAt22AY.390.000049
S272P272TCctAct22AY.40.000003
S272P272delCCT---22AY.40.000003
S272P272SCctTct22AY.410.000588
S272P272TCctAct22AY.430.000009
S272P272HcCtcAt22AY.440.000012
S272P272LcCtcTt22AY.460.000208
S272P272PccTccG12AY.46.60.000072
S272P272PccTccC12AY.46.60.000072
S272P272LcCtcTt22AY.470.000062
S272P272TCctAct22AY.50.000041
S272P272SCctTct22AY.5.40.000553
S272P272LcCtcTt22AY.60.000082
S272P272delCCT---22AY.670.000929
S272P272SCctTct22AY.750.000112
S272P272RcCtcGt22AY.75.10.000361
S272P272PccTccA22AY.75.10.000361
S272P272delCCT---22AY.9.20.000073
S272P272SCctTct22AY.990.002099
S272P272SCctTct22AY.99.20.000184
S272P272PccTccC22B.1.10.000036
S272P272TCctAct22B.1.1.2650.006309
S272P272LcCtcTt22B.1.1.390.001019
S272P272HcCtcAt22B.1.1.5190.000079
S272P272RcCtcGt22B.1.1.70.000002
S272P272ACctGct22B.1.1.70.000002
S272P272ICCTATA12B.1.1.70.000001
S272P272ICCtATt12B.1.1.70.000001
S272P272TCctAct22B.1.177.70.00033
S272P272LcCtcTt22B.1.177.90.002663
S272P272LcCtcTt22B.1.2210.000142
S272P272delCCT---22B.1.2600.006689
S272P272delCCT---22B.1.4560.006536
S272P272LcCtcTt22B.1.5240.002813
S272P272delCCT---22B.1.5760.001813
S272P272delCCT---22B.1.6200.001892
S272P272TCctAct22B.1.930.001867
S272P272PccTccC22B.400.000729
S272P272SCctTct22D.20.00015
S272P272RcCtcGt22P.10.000032
S272P272LcCtcTt22P.10.000032
S272P272PccTccC22P.1.120.000968
S272P272QcCTcAA22P.20.000373
S272P272delCCT---11A0.000387
S272P272delCCT---11A.2.50.000499
S272P272LcCtcTt11A.23.10.000704
S272P272LcCtcTt11A.270.001656
S272P272LcCtcTt11AD.20.000219
S272P272KCCTAAA11All0
S272P272NCCtAAt11All0
S272P272VCCtGTt11All0
S272P272LcCtcTt11AT.10.005128
S272P272delCCT---11AV.10.005051
S272P272delCCT---11AY.1010.00049
S272P272delCCT---11AY.1030.000006
S272P272SCctTct11AY.1050.000643
S272P272TCctAct11AY.1060.000335
S272P272delCCT---11AY.1080.001103
S272P272delCCT---11AY.1100.000113
S272P272PccTccC11AY.1130.000142
S272P272delCCT---11AY.1130.000142
S272P272SCctTct11AY.1130.000142
S272P272SCctTct11AY.116.10.000311
S272P272delCCT---11AY.1170.000085
S272P272delCCT---11AY.1180.000063
S272P272SCctTct11AY.1190.000035
S272P272LcCtcTt11AY.1190.000035
S272P272NCCtAAt11AY.1190.000035
S272P272LcCtcTt11AY.120.000316
S272P272HcCtcAt11AY.160.00038
S272P272SCctTct11AY.16.10.00047
S272P272SCctTct11AY.230.00007
S272P272SCctTct11AY.23.10.000417
S272P272LcCtcTt11AY.240.000431
S272P272TCctAct11AY.250.000006
S272P272HcCtcAt11AY.260.000028
S272P272del1ccTcc-11AY.260.000028
S272P272LcCtcTt11AY.270.000065
S272P272TCctAct11AY.3.10.000085
S272P272PccTccG11AY.340.000097
S272P272delCCT---11AY.360.000148
S272P272HcCtcAt11AY.370.000316
S272P272TCctAct11AY.390.000025
S272P272TCctAct11AY.4.50.000107
S272P272delCCT---11AY.420.00004
S272P272LcCtcTt11AY.420.00004
S272P272RcCtcGt11AY.420.00004
S272P272PccTccC11AY.430.000004
S272P272delCCT---11AY.440.000006
S272P272SCctTct11AY.460.000104
S272P272SCctTct11AY.46.10.001027
S272P272SCctTct11AY.46.60.000072
S272P272delCCT---11AY.470.000031
S272P272PccTccC11AY.470.000031
S272P272RcCtcGt11AY.480.000465
S272P272SCctTct11AY.480.000465
S272P272PccTccA11AY.50.000021
S272P272LcCtcTt11AY.50.000021
S272P272delCCT---11AY.510.000909
S272P272TCctAct11AY.540.000095
S272P272delCCT---11AY.590.00053
S272P272PccTccC11AY.590.00053
S272P272delCCT---11AY.610.000105
S272P272TCctAct11AY.670.000464
S272P272TCctAct11AY.680.000274
S272P272SCctTct11AY.70.000196
S272P272TCctAct11AY.700.000209
S272P272SCctTct11AY.740.000116
S272P272HcCtcAt11AY.740.000116
S272P272LcCtcTt11AY.750.000056
S272P272LcCtcTt11AY.780.001541
S272P272PccTccC11AY.790.001211
S272P272delCCT---11AY.840.000437
S272P272TCctAct11AY.90.000068
S272P272delCCT---11AY.90.000068
S272P272delCCT---11AY.900.000684
S272P272delCCT---11AY.950.000761
S272P272delCCT---11AY.98.10.000048
S272P272delCCT---11AY.990.001049
S272P272LcCtcTt11B0.000128
S272P272FCCtTTt11B0.000128
S272P272del1Cct-ct11B.10.000009
S272P272RcCtcGt11B.1.10.000018
S272P272SCctTct11B.1.10.000018
S272P272PccTccG11B.1.1.10.000327
S272P272PccTccC11B.1.1.1360.021277
S272P272LcCtcTt11B.1.1.1530.001095
S272P272SCctTct11B.1.1.1570.000913
S272P272TCctAct11B.1.1.1700.001247
S272P272LcCtcTt11B.1.1.1740.003378
S272P272TCctAct11B.1.1.2160.00089
S272P272LcCtcTt11B.1.1.2220.000204
S272P272LcCtcTt11B.1.1.2360.006897
S272P272ACcTGcC11B.1.1.3060.000438
S272P272LcCtcTt11B.1.1.3180.000302
S272P272PccTccC11B.1.1.330.000421
S272P272SCctTct11B.1.1.3480.000796
S272P272SCctTct11B.1.1.390.00051
S272P272RcCtcGt11B.1.1.3910.008547
S272P272delCCT---11B.1.1.5170.006803
S272P272LcCtcTt11B.1.1.5190.00004
S272P272PccTccC11B.1.1.5190.00004
S272P272LcCTcTC11B.1.1.540.003021
S272P272del1Cct-ct11B.1.1.70.000001
S272P272FCCtTTt11B.1.1.70.000001
S272P272HcCTcAC11B.1.1.700.000341
S272P272SCctTct11B.1.1600.000031
S272P272PccTccC11B.1.1600.000031
S272P272LcCtcTt11B.1.160.160.000929
S272P272LcCtcTt11B.1.160.280.002924
S272P272LcCtcTt11B.1.160.320.004292
S272P272delCCT---11B.1.1770.000013
S272P272PccTccG11B.1.1770.000013
S272P272HcCtcAt11B.1.1770.000013
S272P272HcCtcAt11B.1.177.210.000076
S272P272LcCtcTt11B.1.177.30.007634
S272P272LcCtcTt11B.1.177.350.000691
S272P272LcCtcTt11B.1.177.400.005155
S272P272SCctTct11B.1.177.440.000519
S272P272delCCT---11B.1.177.520.001757
S272P272LcCtcTt11B.1.177.520.001757
S272P272delCCT---11B.1.177.690.001484
S272P272LcCtcTt11B.1.177.720.00339
S272P272LcCtcTt11B.1.177.750.001041
S272P272FCCtTTt11B.1.177.870.000728
S272P272HcCtcAt11B.1.20.000009
S272P272SCctTct11B.1.20.000009
S272P272SCctTct11B.1.2010.005682
S272P272LcCtcTt11B.1.214.30.007143
S272P272HcCtcAt11B.1.2210.000071
S272P272LcCtcTt11B.1.2220.001692
S272P272HcCtcAt11B.1.2430.00007
S272P272LcCtcTt11B.1.2580.000067
S272P272TCctAct11B.1.2580.000067
S272P272SCctTct11B.1.258.170.000104
S272P272SCctTct11B.1.2650.001271
S272P272HcCtcAt11B.1.3130.006579
S272P272ACctGct11B.1.3510.00003
S272P272PccTccC11B.1.3510.00003
S272P272VCCtGTt11B.1.3510.00003
S272P272KCCTAAA11B.1.3510.00003
S272P272LcCtcTt11B.1.351.20.000303
S272P272HcCtcAt11B.1.351.30.000876
S272P272SCctTct11B.1.351.50.0006
S272P272delCCT---11B.1.360.000146
S272P272LcCtcTt11B.1.36.10.00114
S272P272HcCtcAt11B.1.36.250.002208
S272P272LcCtcTt11B.1.3670.000792
S272P272LcCtcTt11B.1.3750.00082
S272P272PccTccC11B.1.3960.000706
S272P272delCCT---11B.1.416.10.001563
S272P272PccTccA11B.1.4270.00005
S272P272PccTccC11B.1.4290.000024
S272P272SCctTct11B.1.4290.000024
S272P272LcCtcTt11B.1.429.10.012048
S272P272LcCTcTC11B.1.4430.004673
S272P272LcCtcTt11B.1.4730.019231
S272P272LcCtcTt11B.1.4800.002488
S272P272PccTccG11B.1.4990.00105
S272P272ACctGct11B.1.5250.000113
S272P272LcCtcTt11B.1.5330.009615
S272P272LcCtcTt11B.1.5640.000426
S272P272SCctTct11B.1.5720.025
S272P272PccTccC11B.1.5950.000261
S272P272LcCtcTt11B.1.5960.000087
S272P272SCctTct11B.1.5960.000087
S272P272delCCT---11B.1.6090.000479
S272P272delCCT---11B.1.617.10.000129
S272P272LcCtcTt11B.1.6210.000089
S272P272delCCT---11B.1.621.10.000506
S272P272delCCT---11B.1.6270.00202
S272P272delCCT---11B.1.6300.005236
S272P272LcCtcTt11B.1.6360.006711
S272P272TCctAct11B.1.6370.000073
S272P272SCctTct11B.30.000831
S272P272delCCT---11C.1.20.004255
S272P272LcCtcTt11C.36.30.000567
S272P272LcCtcTt11C.370.000116
S272P272delCCT---11C.370.000116
S272P272HcCtcAt11D.20.000075
S272P272PccTccA11D.20.000075
S272P272LcCtcTt11D.50.004975
S272P272SCctTct11P.10.000016
S272P272PccTccC11P.10.000016
S272P272delCCT---11P.1.10.000318
S272P272SCctTct11P.1.120.000484
S272P272LcCtcTt11Q.10.000126
S272P272delCCT---11Q.40.000455
S272P272LcCtcTt11Z.10.00289