CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 263 | A263A | syn | gcA | gcG | 925 | 416 | 0.44973 | 22349-22351 | |
S | 263 | A263A | syn | gcA | gcT | 925 | 328 | 0.354595 | 22349-22351 | |
S | 263 | A263A | syn | gcA | gcC | 925 | 181 | 0.195676 | 22349-22351 | |
S | 263 | A263S | nonsyn | Gca | Tca | 891 | 888 | 0.996633 | 22349-22351 | |
S | 263 | A263S | nonsyn | GcA | TcT | 891 | 2 | 0.00224467 | 22349-22351 | |
S | 263 | A263S | nonsyn | GcA | TcC | 891 | 1 | 0.00112233 | 22349-22351 | |
S | 263 | A263V | nonsyn | gCa | gTa | 704 | 701 | 0.995739 | 22349-22351 | |
S | 263 | A263V | nonsyn | gCA | gTG | 704 | 3 | 0.00426136 | 22349-22351 | |
S | 263 | A263T | nonsyn | Gca | Aca | 315 | 310 | 0.984127 | 22349-22351 | |
S | 263 | A263T | nonsyn | GcA | AcG | 315 | 2 | 0.00634921 | 22349-22351 | |
S | 263 | A263T | nonsyn | GcA | AcT | 315 | 2 | 0.00634921 | 22349-22351 | |
S | 263 | A263T | nonsyn | GcA | AcC | 315 | 1 | 0.0031746 | 22349-22351 | |
S | 263 | A263del | del | GCA | --- | 285 | 285 | 1 | 22349-22351 | |
S | 263 | A263P | nonsyn | Gca | Cca | 92 | 90 | 0.978261 | 22349-22351 | |
S | 263 | A263P | nonsyn | GcA | CcG | 92 | 1 | 0.0108696 | 22349-22351 | |
S | 263 | A263P | nonsyn | GcA | CcC | 92 | 1 | 0.0108696 | 22349-22351 | |
S | 263 | A263E | nonsyn | gCa | gAa | 33 | 33 | 1 | 22349-22351 | |
S | 263 | A263del1 | del | GcA | -cT | 14 | 7 | 0.5 | 22349-22351 | |
S | 263 | A263del1 | del | gcA | gc- | 14 | 5 | 0.357143 | 22349-22351 | |
S | 263 | A263del1 | del | GCa | -Ta | 14 | 1 | 0.0714286 | 22349-22351 | |
S | 263 | A263del1 | del | Gca | -ca | 14 | 1 | 0.0714286 | 22349-22351 | |
S | 263 | A263G | nonsyn | gCA | gGT | 12 | 7 | 0.583333 | 22349-22351 | |
S | 263 | A263G | nonsyn | gCa | gGa | 12 | 4 | 0.333333 | 22349-22351 | |
S | 263 | A263G | nonsyn | gCA | gGG | 12 | 1 | 0.0833333 | 22349-22351 | |
S | 263 | A263Y | nonsyn | GCA | TAC | 5 | 3 | 0.6 | 22349-22351 | |
S | 263 | A263Y | nonsyn | GCA | TAT | 5 | 2 | 0.4 | 22349-22351 | |
S | 263 | A263X | nonsyn | GCa | TAa | 2 | 2 | 1 | 22349-22351 | |
S | 263 | A263del2 | del | gCA | g-- | 2 | 2 | 1 | 22349-22351 | |
S | 263 | A263D | nonsyn | gCA | gAC | 2 | 1 | 0.5 | 22349-22351 | |
S | 263 | A263D | nonsyn | gCA | gAT | 2 | 1 | 0.5 | 22349-22351 | |
S | 263 | A263L | nonsyn | GCA | TTG | 2 | 1 | 0.5 | 22349-22351 | |
S | 263 | A263L | nonsyn | GCa | TTa | 2 | 1 | 0.5 | 22349-22351 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 263 | A263A | gcA | gcG | 416 | 925 | All | 0.00008 |
S | 263 | A263A | gcA | gcT | 328 | 925 | All | 0.000063 |
S | 263 | A263A | gcA | gcC | 181 | 925 | All | 0.000035 |
S | 263 | A263S | Gca | Tca | 888 | 891 | All | 0.00017 |
S | 263 | A263S | GcA | TcT | 2 | 891 | All | 0 |
S | 263 | A263S | GcA | TcC | 1 | 891 | All | 0 |
S | 263 | A263V | gCa | gTa | 701 | 704 | All | 0.000134 |
S | 263 | A263V | gCA | gTG | 3 | 704 | All | 0.000001 |
S | 263 | A263T | Gca | Aca | 310 | 315 | All | 0.000059 |
S | 263 | A263T | GcA | AcG | 2 | 315 | All | 0 |
S | 263 | A263T | GcA | AcT | 2 | 315 | All | 0 |
S | 263 | A263T | GcA | AcC | 1 | 315 | All | 0 |
S | 263 | A263A | gcA | gcG | 254 | 290 | B.1.1.7 | 0.000227 |
S | 263 | A263A | gcA | gcT | 34 | 290 | B.1.1.7 | 0.00003 |
S | 263 | A263A | gcA | gcC | 2 | 290 | B.1.1.7 | 0.000002 |
S | 263 | A263del | GCA | --- | 285 | 285 | All | 0.000055 |
S | 263 | A263S | Gca | Tca | 211 | 211 | B.1.2 | 0.001858 |
S | 263 | A263A | gcA | gcC | 100 | 133 | B.1.2 | 0.000881 |
S | 263 | A263A | gcA | gcT | 31 | 133 | B.1.2 | 0.000273 |
S | 263 | A263A | gcA | gcG | 2 | 133 | B.1.2 | 0.000018 |
S | 263 | A263S | Gca | Tca | 109 | 109 | A.2.5 | 0.054391 |
S | 263 | A263T | Gca | Aca | 106 | 106 | AY.4 | 0.000165 |
S | 263 | A263V | gCa | gTa | 106 | 106 | AY.7.1 | 0.011946 |
S | 263 | A263S | Gca | Tca | 100 | 100 | B.1.1.7 | 0.00009 |
S | 263 | A263P | Gca | Cca | 90 | 92 | All | 0.000017 |
S | 263 | A263P | GcA | CcG | 1 | 92 | All | 0 |
S | 263 | A263P | GcA | CcC | 1 | 92 | All | 0 |
S | 263 | A263S | Gca | Tca | 84 | 84 | AY.25 | 0.000505 |
S | 263 | A263P | Gca | Cca | 81 | 81 | B.1.1.7 | 0.000073 |
S | 263 | A263V | gCa | gTa | 77 | 77 | B.1.523 | 0.188725 |
S | 263 | A263del | GCA | --- | 69 | 69 | B.1.1.7 | 0.000062 |
S | 263 | A263V | gCa | gTa | 63 | 63 | AY.44 | 0.000383 |
S | 263 | A263V | gCa | gTa | 63 | 63 | AY.5.3 | 0.021255 |
S | 263 | A263A | gcA | gcT | 52 | 60 | B.1 | 0.000476 |
S | 263 | A263A | gcA | gcG | 7 | 60 | B.1 | 0.000064 |
S | 263 | A263A | gcA | gcC | 1 | 60 | B.1 | 0.000009 |
S | 263 | A263V | gCa | gTa | 51 | 51 | AY.43 | 0.000226 |
S | 263 | A263T | Gca | Aca | 48 | 48 | AY.103 | 0.000298 |
S | 263 | A263V | gCa | gTa | 42 | 42 | B.1.1.7 | 0.000038 |
S | 263 | A263S | Gca | Tca | 42 | 42 | B.1.617.2 | 0.000158 |
S | 263 | A263V | gCa | gTa | 42 | 42 | P.1 | 0.000662 |
S | 263 | A263S | Gca | Tca | 40 | 40 | B.1.1 | 0.000726 |
S | 263 | A263V | gCa | gTa | 39 | 39 | B.1.617.2 | 0.000147 |
S | 263 | A263E | gCa | gAa | 33 | 33 | All | 0.000006 |
S | 263 | A263T | Gca | Aca | 31 | 31 | B.1.426 | 0.031282 |
S | 263 | A263A | gcA | gcG | 26 | 30 | AY.25 | 0.000156 |
S | 263 | A263A | gcA | gcT | 4 | 30 | AY.25 | 0.000024 |
S | 263 | A263A | gcA | gcG | 25 | 30 | AY.43 | 0.000111 |
S | 263 | A263A | gcA | gcC | 3 | 30 | AY.43 | 0.000013 |
S | 263 | A263A | gcA | gcT | 2 | 30 | AY.43 | 0.000009 |
S | 263 | A263A | gcA | gcC | 29 | 29 | AY.114 | 0.006702 |
S | 263 | A263S | Gca | Tca | 27 | 27 | AY.3 | 0.000269 |
S | 263 | A263S | Gca | Tca | 27 | 27 | B.1.177 | 0.000356 |
S | 263 | A263S | Gca | Tca | 26 | 26 | AY.43 | 0.000115 |
S | 263 | A263del | GCA | --- | 24 | 24 | B.1 | 0.00022 |
S | 263 | A263V | gCa | gTa | 23 | 23 | AY.4 | 0.000036 |
S | 263 | A263A | gcA | gcT | 17 | 21 | P.1 | 0.000268 |
S | 263 | A263A | gcA | gcG | 4 | 21 | P.1 | 0.000063 |
S | 263 | A263S | Gca | Tca | 20 | 20 | AY.4 | 0.000031 |
S | 263 | A263del | GCA | --- | 20 | 20 | AY.43 | 0.000089 |
S | 263 | A263S | Gca | Tca | 19 | 19 | B.1 | 0.000174 |
S | 263 | A263S | Gca | Tca | 18 | 18 | AY.103 | 0.000112 |
S | 263 | A263A | gcA | gcT | 17 | 17 | B.1.351 | 0.000505 |
S | 263 | A263del | GCA | --- | 17 | 17 | B.1.617.2 | 0.000064 |
S | 263 | A263A | gcA | gcG | 8 | 17 | B.1.617.2 | 0.00003 |
S | 263 | A263A | gcA | gcT | 6 | 17 | B.1.617.2 | 0.000023 |
S | 263 | A263A | gcA | gcC | 3 | 17 | B.1.617.2 | 0.000011 |
S | 263 | A263V | gCa | gTa | 16 | 16 | AY.102 | 0.000424 |
S | 263 | A263T | Gca | Aca | 15 | 15 | B.1.1.7 | 0.000013 |
S | 263 | A263del | GCA | --- | 15 | 15 | B.1.351 | 0.000446 |
S | 263 | A263del1 | GcA | -cT | 7 | 14 | All | 0.000001 |
S | 263 | A263del1 | gcA | gc- | 5 | 14 | All | 0.000001 |
S | 263 | A263del1 | GCa | -Ta | 1 | 14 | All | 0 |
S | 263 | A263del1 | Gca | -ca | 1 | 14 | All | 0 |
S | 263 | A263A | gcA | gcC | 14 | 14 | AY.4.2 | 0.000304 |
S | 263 | A263A | gcA | gcT | 9 | 14 | B.1.1 | 0.000163 |
S | 263 | A263A | gcA | gcG | 3 | 14 | B.1.1 | 0.000054 |
S | 263 | A263A | gcA | gcC | 2 | 14 | B.1.1 | 0.000036 |
S | 263 | A263V | gCa | gTa | 13 | 13 | AY.120 | 0.000483 |
S | 263 | A263A | gcA | gcG | 12 | 13 | AY.120 | 0.000446 |
S | 263 | A263A | gcA | gcT | 1 | 13 | AY.120 | 0.000037 |
S | 263 | A263A | gcA | gcT | 13 | 13 | B.1.206 | 0.010604 |
S | 263 | A263G | gCA | gGT | 7 | 12 | All | 0.000001 |
S | 263 | A263G | gCa | gGa | 4 | 12 | All | 0.000001 |
S | 263 | A263G | gCA | gGG | 1 | 12 | All | 0 |
S | 263 | A263A | gcA | gcT | 6 | 12 | AY.4 | 0.000009 |
S | 263 | A263A | gcA | gcG | 5 | 12 | AY.4 | 0.000008 |
S | 263 | A263A | gcA | gcC | 1 | 12 | AY.4 | 0.000002 |
S | 263 | A263S | Gca | Tca | 11 | 12 | AY.44 | 0.000067 |
S | 263 | A263S | GcA | TcT | 1 | 12 | AY.44 | 0.000006 |
S | 263 | A263S | Gca | Tca | 12 | 12 | B.1.596 | 0.001046 |
S | 263 | A263T | Gca | Aca | 11 | 11 | AY.1 | 0.004353 |
S | 263 | A263V | gCa | gTa | 11 | 11 | B.1.2 | 0.000097 |
S | 263 | A263A | gcA | gcT | 11 | 11 | B.1.564 | 0.004685 |
S | 263 | A263T | Gca | Aca | 11 | 11 | B.1.617.2 | 0.000041 |
S | 263 | A263V | gCa | gTa | 10 | 10 | AY.25 | 0.00006 |
S | 263 | A263V | gCa | gTa | 10 | 10 | AY.5 | 0.000206 |
S | 263 | A263A | gcA | gcG | 10 | 10 | B.1.258 | 0.000665 |
S | 263 | A263S | Gca | Tca | 9 | 9 | AY.26 | 0.000255 |
S | 263 | A263V | gCa | gTa | 9 | 9 | B.1.177 | 0.000119 |
S | 263 | A263V | gCa | gTa | 9 | 9 | B.1.429 | 0.000212 |
S | 263 | A263S | Gca | Tca | 9 | 9 | B.1.429 | 0.000212 |
S | 263 | A263A | gcA | gcT | 9 | 9 | B.1.438.1 | 0.000965 |
S | 263 | A263del | GCA | --- | 9 | 9 | P.1 | 0.000142 |
S | 263 | A263T | Gca | Aca | 8 | 8 | AY.43 | 0.000035 |
S | 263 | A263S | Gca | Tca | 8 | 8 | B.1.160 | 0.00025 |
S | 263 | A263A | gcA | gcG | 4 | 7 | AY.3 | 0.00004 |
S | 263 | A263A | gcA | gcC | 2 | 7 | AY.3 | 0.00002 |
S | 263 | A263A | gcA | gcT | 1 | 7 | AY.3 | 0.00001 |
S | 263 | A263T | Gca | Aca | 7 | 7 | AY.98.1 | 0.000339 |
S | 263 | A263V | gCa | gTa | 7 | 7 | B.1.428.2 | 0.233333 |
S | 263 | A263del | GCA | --- | 7 | 7 | B.1.525 | 0.000792 |
S | 263 | A263V | gCa | gTa | 6 | 6 | AY.103 | 0.000037 |
S | 263 | A263A | gcA | gcT | 6 | 6 | AY.119 | 0.000212 |
S | 263 | A263V | gCa | gTa | 6 | 6 | AY.26 | 0.00017 |
S | 263 | A263V | gCa | gTa | 6 | 6 | AY.39 | 0.000148 |
S | 263 | A263A | gcA | gcT | 6 | 6 | AY.69 | 0.00112 |
S | 263 | A263A | gcA | gcC | 6 | 6 | AY.98.1 | 0.000291 |
S | 263 | A263T | Gca | Aca | 6 | 6 | B.1 | 0.000055 |
S | 263 | A263E | gCa | gAa | 6 | 6 | B.1.1.7 | 0.000005 |
S | 263 | A263A | gcA | gcG | 5 | 5 | A.30 | 0.714286 |
S | 263 | A263Y | GCA | TAC | 3 | 5 | All | 0.000001 |
S | 263 | A263Y | GCA | TAT | 2 | 5 | All | 0 |
S | 263 | A263A | gcA | gcG | 5 | 5 | AY.100 | 0.00023 |
S | 263 | A263A | gcA | gcG | 4 | 5 | AY.102 | 0.000106 |
S | 263 | A263A | gcA | gcC | 1 | 5 | AY.102 | 0.000027 |
S | 263 | A263S | Gca | Tca | 5 | 5 | AY.120 | 0.000186 |
S | 263 | A263del | GCA | --- | 5 | 5 | AY.29 | 0.000079 |
S | 263 | A263T | Gca | Aca | 5 | 5 | AY.3 | 0.00005 |
S | 263 | A263T | Gca | Aca | 5 | 5 | AY.5 | 0.000103 |
S | 263 | A263P | Gca | Cca | 5 | 5 | AY.54 | 0.000477 |
S | 263 | A263del | GCA | --- | 5 | 5 | AY.9.2 | 0.000184 |
S | 263 | A263V | gCa | gTa | 5 | 5 | B.1 | 0.000046 |
S | 263 | A263del | GCA | --- | 5 | 5 | B.1.351.2 | 0.001513 |
S | 263 | A263V | gCa | gTa | 5 | 5 | B.1.362 | 0.007704 |
S | 263 | A263A | gcA | gcT | 5 | 5 | B.1.595 | 0.001305 |
S | 263 | A263A | gcA | gcT | 5 | 5 | B.1.596 | 0.000436 |
S | 263 | A263del | GCA | --- | 5 | 5 | B.1.621 | 0.000443 |
S | 263 | A263A | gcA | gcT | 5 | 5 | B.6 | 0.00455 |
S | 263 | A263del | GCA | --- | 5 | 5 | P.1.15 | 0.001162 |
S | 263 | A263A | gcA | gcG | 4 | 4 | 0.222222 | |
S | 263 | A263del | GCA | --- | 4 | 4 | AY.25 | 0.000024 |
S | 263 | A263T | Gca | Aca | 4 | 4 | AY.39.1 | 0.000158 |
S | 263 | A263S | Gca | Tca | 4 | 4 | AY.4.2.1 | 0.000596 |
S | 263 | A263T | Gca | Aca | 4 | 4 | AY.44 | 0.000024 |
S | 263 | A263S | Gca | Tca | 4 | 4 | AY.46 | 0.000416 |
S | 263 | A263S | Gca | Tca | 4 | 4 | AY.74 | 0.000463 |
S | 263 | A263E | gCa | gAa | 4 | 4 | B.1 | 0.000037 |
S | 263 | A263V | gCa | gTa | 4 | 4 | B.1.1.1 | 0.001307 |
S | 263 | A263G | gCA | gGT | 2 | 4 | B.1.1.7 | 0.000002 |
S | 263 | A263G | gCA | gGG | 1 | 4 | B.1.1.7 | 0.000001 |
S | 263 | A263G | gCa | gGa | 1 | 4 | B.1.1.7 | 0.000001 |
S | 263 | A263S | Gca | Tca | 4 | 4 | B.1.177.41 | 0.01 |
S | 263 | A263T | Gca | Aca | 4 | 4 | B.1.2 | 0.000035 |
S | 263 | A263A | gcA | gcT | 4 | 4 | B.1.234 | 0.000528 |
S | 263 | A263A | gcA | gcT | 4 | 4 | B.1.369 | 0.001141 |
S | 263 | A263A | gcA | gcT | 3 | 4 | B.1.429 | 0.000071 |
S | 263 | A263A | gcA | gcG | 1 | 4 | B.1.429 | 0.000024 |
S | 263 | A263A | gcA | gcT | 4 | 4 | B.1.546 | 0.014815 |
S | 263 | A263A | gcA | gcT | 4 | 4 | B.1.576 | 0.003626 |
S | 263 | A263S | Gca | Tca | 4 | 4 | C.37 | 0.000464 |
S | 263 | A263V | gCa | gTa | 4 | 4 | R.1 | 0.00036 |
S | 263 | A263S | Gca | Tca | 3 | 3 | AY.100 | 0.000138 |
S | 263 | A263del | GCA | --- | 3 | 3 | AY.102 | 0.00008 |
S | 263 | A263V | gCa | gTa | 3 | 3 | AY.20 | 0.000117 |
S | 263 | A263V | gCa | gTa | 3 | 3 | AY.23 | 0.000209 |
S | 263 | A263A | gcA | gcC | 2 | 3 | AY.23 | 0.000139 |
S | 263 | A263A | gcA | gcG | 1 | 3 | AY.23 | 0.00007 |
S | 263 | A263V | gCa | gTa | 3 | 3 | AY.3 | 0.00003 |
S | 263 | A263del | GCA | --- | 3 | 3 | AY.3 | 0.00003 |
S | 263 | A263del | GCA | --- | 3 | 3 | AY.33 | 0.0002 |
S | 263 | A263S | Gca | Tca | 2 | 3 | AY.42 | 0.00008 |
S | 263 | A263S | GcA | TcC | 1 | 3 | AY.42 | 0.00004 |
S | 263 | A263A | gcA | gcG | 1 | 3 | AY.44 | 0.000006 |
S | 263 | A263A | gcA | gcC | 1 | 3 | AY.44 | 0.000006 |
S | 263 | A263A | gcA | gcT | 1 | 3 | AY.44 | 0.000006 |
S | 263 | A263V | gCa | gTa | 3 | 3 | AY.45 | 0.000365 |
S | 263 | A263V | gCa | gTa | 3 | 3 | AY.5.4 | 0.00083 |
S | 263 | A263del | GCA | --- | 3 | 3 | AY.71 | 0.001425 |
S | 263 | A263T | Gca | Aca | 3 | 3 | AY.75 | 0.000168 |
S | 263 | A263A | gcA | gcG | 3 | 3 | AY.9.1 | 0.000251 |
S | 263 | A263S | Gca | Tca | 3 | 3 | AY.99.2 | 0.000276 |
S | 263 | A263del | GCA | --- | 3 | 3 | B.1.1 | 0.000054 |
S | 263 | A263T | Gca | Aca | 3 | 3 | B.1.1.222 | 0.000612 |
S | 263 | A263A | gcA | gcT | 3 | 3 | B.1.1.258 | 0.009772 |
S | 263 | A263A | gcA | gcT | 3 | 3 | B.1.1.28 | 0.000934 |
S | 263 | A263S | Gca | Tca | 3 | 3 | B.1.1.284 | 0.000322 |
S | 263 | A263A | gcA | gcG | 3 | 3 | B.1.1.316 | 0.002775 |
S | 263 | A263A | gcA | gcG | 2 | 3 | B.1.1.33 | 0.000842 |
S | 263 | A263A | gcA | gcT | 1 | 3 | B.1.1.33 | 0.000421 |
S | 263 | A263T | Gca | Aca | 3 | 3 | B.1.1.37 | 0.000579 |
S | 263 | A263V | gCa | gTa | 3 | 3 | B.1.1.39 | 0.001529 |
S | 263 | A263V | gCa | gTa | 3 | 3 | B.1.160 | 0.000094 |
S | 263 | A263A | gcA | gcG | 2 | 3 | B.1.177 | 0.000026 |
S | 263 | A263A | gcA | gcT | 1 | 3 | B.1.177 | 0.000013 |
S | 263 | A263del | GCA | --- | 3 | 3 | B.1.2 | 0.000026 |
S | 263 | A263S | Gca | Tca | 3 | 3 | B.1.258.17 | 0.000312 |
S | 263 | A263S | Gca | Tca | 3 | 3 | B.1.525 | 0.000339 |
S | 263 | A263T | Gca | Aca | 3 | 3 | B.1.595 | 0.000783 |
S | 263 | A263E | gCa | gAa | 3 | 3 | B.6 | 0.00273 |
S | 263 | A263S | Gca | Tca | 3 | 3 | C.18 | 0.007772 |
S | 263 | A263V | gCa | gTa | 3 | 3 | C.37 | 0.000348 |
S | 263 | A263A | gcA | gcG | 3 | 3 | C.37 | 0.000348 |
S | 263 | A263S | Gca | Tca | 3 | 3 | D.2 | 0.000225 |
S | 263 | A263S | Gca | Tca | 3 | 3 | P.1 | 0.000047 |
S | 263 | A263V | gCA | gTG | 2 | 2 | 0.111111 | |
S | 263 | A263del | GCA | --- | 2 | 2 | 0.111111 | |
S | 263 | A263S | Gca | Tca | 2 | 2 | A | 0.000774 |
S | 263 | A263T | Gca | Aca | 2 | 2 | A.5 | 0.003846 |
S | 263 | A263X | GCa | TAa | 2 | 2 | All | 0 |
S | 263 | A263del2 | gCA | g-- | 2 | 2 | All | 0 |
S | 263 | A263L | GCa | TTa | 1 | 2 | All | 0 |
S | 263 | A263D | gCA | gAT | 1 | 2 | All | 0 |
S | 263 | A263D | gCA | gAC | 1 | 2 | All | 0 |
S | 263 | A263L | GCA | TTG | 1 | 2 | All | 0 |
S | 263 | A263del | GCA | --- | 2 | 2 | AY.101 | 0.000981 |
S | 263 | A263T | Gca | Aca | 2 | 2 | AY.105 | 0.001286 |
S | 263 | A263S | GcA | TcT | 1 | 2 | AY.110 | 0.000113 |
S | 263 | A263S | Gca | Tca | 1 | 2 | AY.110 | 0.000113 |
S | 263 | A263A | gcA | gcC | 1 | 2 | AY.113 | 0.000142 |
S | 263 | A263T | GcA | AcC | 1 | 2 | AY.113 | 0.000142 |
S | 263 | A263A | gcA | gcG | 1 | 2 | AY.113 | 0.000142 |
S | 263 | A263P | GcA | CcG | 1 | 2 | AY.113 | 0.000142 |
S | 263 | A263P | GcA | CcC | 1 | 2 | AY.113 | 0.000142 |
S | 263 | A263T | GcA | AcG | 1 | 2 | AY.113 | 0.000142 |
S | 263 | A263S | Gca | Tca | 2 | 2 | AY.117 | 0.000169 |
S | 263 | A263A | gcA | gcG | 2 | 2 | AY.118 | 0.000125 |
S | 263 | A263S | Gca | Tca | 2 | 2 | AY.118 | 0.000125 |
S | 263 | A263T | Gca | Aca | 2 | 2 | AY.119 | 0.000071 |
S | 263 | A263S | Gca | Tca | 2 | 2 | AY.119 | 0.000071 |
S | 263 | A263S | Gca | Tca | 2 | 2 | AY.16 | 0.000759 |
S | 263 | A263del | GCA | --- | 2 | 2 | AY.26 | 0.000057 |
S | 263 | A263T | Gca | Aca | 2 | 2 | AY.26 | 0.000057 |
S | 263 | A263A | gcA | gcT | 2 | 2 | AY.33 | 0.000134 |
S | 263 | A263T | Gca | Aca | 2 | 2 | AY.33 | 0.000134 |
S | 263 | A263del1 | gcA | gc- | 2 | 2 | AY.36 | 0.000296 |
S | 263 | A263A | gcA | gcT | 1 | 2 | AY.36 | 0.000148 |
S | 263 | A263A | gcA | gcG | 1 | 2 | AY.36 | 0.000148 |
S | 263 | A263S | Gca | Tca | 2 | 2 | AY.39 | 0.000049 |
S | 263 | A263del | GCA | --- | 2 | 2 | AY.4 | 0.000003 |
S | 263 | A263del | GCA | --- | 2 | 2 | AY.42 | 0.00008 |
S | 263 | A263A | gcA | gcC | 1 | 2 | AY.42 | 0.00004 |
S | 263 | A263A | gcA | gcT | 1 | 2 | AY.42 | 0.00004 |
S | 263 | A263del1 | GcA | -cT | 2 | 2 | AY.43 | 0.000009 |
S | 263 | A263del1 | GcA | -cT | 2 | 2 | AY.46.6 | 0.000144 |
S | 263 | A263A | gcA | gcC | 2 | 2 | AY.47 | 0.000062 |
S | 263 | A263S | Gca | Tca | 2 | 2 | AY.5 | 0.000041 |
S | 263 | A263V | gCa | gTa | 2 | 2 | AY.50 | 0.001599 |
S | 263 | A263T | Gca | Aca | 2 | 2 | AY.6 | 0.000082 |
S | 263 | A263S | Gca | Tca | 2 | 2 | AY.61 | 0.00021 |
S | 263 | A263del | GCA | --- | 2 | 2 | AY.65 | 0.001066 |
S | 263 | A263del | GCA | --- | 2 | 2 | AY.67 | 0.000929 |
S | 263 | A263del | GCA | --- | 2 | 2 | AY.75 | 0.000112 |
S | 263 | A263A | gcA | gcC | 2 | 2 | AY.9 | 0.000135 |
S | 263 | A263del1 | GcA | -cT | 2 | 2 | AY.9.2 | 0.000073 |
S | 263 | A263V | gCa | gTa | 2 | 2 | AY.98 | 0.000158 |
S | 263 | A263del | GCA | --- | 2 | 2 | AY.99 | 0.002099 |
S | 263 | A263del1 | gcA | gc- | 2 | 2 | B | 0.000256 |
S | 263 | A263V | gCa | gTa | 1 | 2 | B.1.1 | 0.000018 |
S | 263 | A263V | gCA | gTG | 1 | 2 | B.1.1 | 0.000018 |
S | 263 | A263S | Gca | Tca | 2 | 2 | B.1.1.170 | 0.002494 |
S | 263 | A263V | gCa | gTa | 2 | 2 | B.1.1.222 | 0.000408 |
S | 263 | A263V | gCa | gTa | 2 | 2 | B.1.1.28 | 0.000622 |
S | 263 | A263S | Gca | Tca | 2 | 2 | B.1.1.312 | 0.003824 |
S | 263 | A263A | gcA | gcT | 2 | 2 | B.1.1.411 | 0.029412 |
S | 263 | A263S | Gca | Tca | 2 | 2 | B.1.1.519 | 0.000079 |
S | 263 | A263A | gcA | gcG | 2 | 2 | B.1.1.519 | 0.000079 |
S | 263 | A263del2 | gCA | g-- | 2 | 2 | B.1.1.7 | 0.000002 |
S | 263 | A263del | GCA | --- | 2 | 2 | B.1.177 | 0.000026 |
S | 263 | A263E | gCa | gAa | 2 | 2 | B.1.177 | 0.000026 |
S | 263 | A263T | Gca | Aca | 2 | 2 | B.1.177 | 0.000026 |
S | 263 | A263del | GCA | --- | 2 | 2 | B.1.258 | 0.000133 |
S | 263 | A263S | Gca | Tca | 2 | 2 | B.1.258 | 0.000133 |
S | 263 | A263del | GCA | --- | 2 | 2 | B.1.260 | 0.006689 |
S | 263 | A263A | gcA | gcG | 2 | 2 | B.1.311 | 0.000549 |
S | 263 | A263A | gcA | gcT | 2 | 2 | B.1.324 | 0.00321 |
S | 263 | A263S | Gca | Tca | 2 | 2 | B.1.351 | 0.000059 |
S | 263 | A263A | gcA | gcT | 2 | 2 | B.1.36 | 0.000292 |
S | 263 | A263S | Gca | Tca | 2 | 2 | B.1.36.10 | 0.009569 |
S | 263 | A263A | gcA | gcG | 2 | 2 | B.1.426 | 0.002018 |
S | 263 | A263A | gcA | gcG | 2 | 2 | B.1.427 | 0.000101 |
S | 263 | A263A | gcA | gcT | 2 | 2 | B.1.432 | 0.022472 |
S | 263 | A263del | GCA | --- | 2 | 2 | B.1.456 | 0.006536 |
S | 263 | A263V | gCa | gTa | 2 | 2 | B.1.466.2 | 0.000782 |
S | 263 | A263V | gCa | gTa | 2 | 2 | B.1.470 | 0.002809 |
S | 263 | A263A | gcA | gcT | 2 | 2 | B.1.501 | 0.014706 |
S | 263 | A263T | Gca | Aca | 2 | 2 | B.1.525 | 0.000226 |
S | 263 | A263A | gcA | gcT | 2 | 2 | B.1.525 | 0.000226 |
S | 263 | A263V | gCa | gTa | 2 | 2 | B.1.526 | 0.000047 |
S | 263 | A263S | Gca | Tca | 2 | 2 | B.1.526 | 0.000047 |
S | 263 | A263V | gCa | gTa | 2 | 2 | B.1.575 | 0.000607 |
S | 263 | A263del | GCA | --- | 2 | 2 | B.1.576 | 0.001813 |
S | 263 | A263A | gcA | gcT | 2 | 2 | B.1.577 | 0.001375 |
S | 263 | A263A | gcA | gcT | 2 | 2 | B.1.589 | 0.015152 |
S | 263 | A263S | Gca | Tca | 2 | 2 | B.1.595 | 0.000522 |
S | 263 | A263P | Gca | Cca | 2 | 2 | B.1.617.2 | 0.000008 |
S | 263 | A263G | gCA | gGT | 2 | 2 | B.1.617.2 | 0.000008 |
S | 263 | A263del | GCA | --- | 2 | 2 | B.1.620 | 0.001892 |
S | 263 | A263V | gCa | gTa | 2 | 2 | B.1.621 | 0.000177 |
S | 263 | A263V | gCa | gTa | 2 | 2 | B.1.628 | 0.000705 |
S | 263 | A263del | GCA | --- | 2 | 2 | B.1.630 | 0.010471 |
S | 263 | A263E | gCa | gAa | 2 | 2 | B.6.6 | 0.001778 |
S | 263 | A263A | gcA | gcT | 2 | 2 | B.6.6 | 0.001778 |
S | 263 | A263del | GCA | --- | 2 | 2 | C.37 | 0.000232 |
S | 263 | A263A | gcA | gcT | 2 | 2 | P.2 | 0.000373 |
S | 263 | A263A | gcA | gcG | 1 | 2 | Q.8 | 0.000165 |
S | 263 | A263A | gcA | gcT | 1 | 2 | Q.8 | 0.000165 |
S | 263 | A263del | GCA | --- | 1 | 1 | A | 0.000387 |
S | 263 | A263V | gCa | gTa | 1 | 1 | A.2 | 0.000662 |
S | 263 | A263S | Gca | Tca | 1 | 1 | A.2.2 | 0.001689 |
S | 263 | A263del | GCA | --- | 1 | 1 | A.2.5 | 0.000499 |
S | 263 | A263A | gcA | gcT | 1 | 1 | A.23.1 | 0.000704 |
S | 263 | A263V | gCa | gTa | 1 | 1 | A.3 | 0.002096 |
S | 263 | A263A | gcA | gcC | 1 | 1 | AD.2 | 0.000219 |
S | 263 | A263A | gcA | gcT | 1 | 1 | AL.1 | 0.012987 |
S | 263 | A263del | GCA | --- | 1 | 1 | AV.1 | 0.005051 |
S | 263 | A263S | Gca | Tca | 1 | 1 | AY.101 | 0.00049 |
S | 263 | A263T | Gca | Aca | 1 | 1 | AY.102 | 0.000027 |
S | 263 | A263S | Gca | Tca | 1 | 1 | AY.102 | 0.000027 |
S | 263 | A263A | gcA | gcG | 1 | 1 | AY.103 | 0.000006 |
S | 263 | A263del | GCA | --- | 1 | 1 | AY.103 | 0.000006 |
S | 263 | A263del1 | GCa | -Ta | 1 | 1 | AY.103 | 0.000006 |
S | 263 | A263del | GCA | --- | 1 | 1 | AY.107 | 0.000466 |
S | 263 | A263del | GCA | --- | 1 | 1 | AY.108 | 0.001103 |
S | 263 | A263T | GcA | AcG | 1 | 1 | AY.110 | 0.000113 |
S | 263 | A263S | Gca | Tca | 1 | 1 | AY.116 | 0.000287 |
S | 263 | A263del | GCA | --- | 1 | 1 | AY.117 | 0.000085 |
S | 263 | A263del | GCA | --- | 1 | 1 | AY.118 | 0.000063 |
S | 263 | A263V | gCa | gTa | 1 | 1 | AY.118 | 0.000063 |
S | 263 | A263V | gCa | gTa | 1 | 1 | AY.119 | 0.000035 |
S | 263 | A263E | gCa | gAa | 1 | 1 | AY.119 | 0.000035 |
S | 263 | A263P | Gca | Cca | 1 | 1 | AY.119 | 0.000035 |
S | 263 | A263S | Gca | Tca | 1 | 1 | AY.12 | 0.000316 |
S | 263 | A263del | GCA | --- | 1 | 1 | AY.120 | 0.000037 |
S | 263 | A263S | Gca | Tca | 1 | 1 | AY.121 | 0.000135 |
S | 263 | A263T | Gca | Aca | 1 | 1 | AY.121 | 0.000135 |
S | 263 | A263S | Gca | Tca | 1 | 1 | AY.20 | 0.000039 |
S | 263 | A263A | gcA | gcT | 1 | 1 | AY.20 | 0.000039 |
S | 263 | A263A | gcA | gcG | 1 | 1 | AY.23.1 | 0.000417 |
S | 263 | A263A | gcA | gcT | 1 | 1 | AY.24 | 0.000431 |
S | 263 | A263T | Gca | Aca | 1 | 1 | AY.25 | 0.000006 |
S | 263 | A263S | Gca | Tca | 1 | 1 | AY.27 | 0.000065 |
S | 263 | A263Y | GCA | TAC | 1 | 1 | AY.3 | 0.00001 |
S | 263 | A263P | Gca | Cca | 1 | 1 | AY.34.1 | 0.00051 |
S | 263 | A263del | GCA | --- | 1 | 1 | AY.34.1 | 0.00051 |
S | 263 | A263del | GCA | --- | 1 | 1 | AY.36 | 0.000148 |
S | 263 | A263A | gcA | gcC | 1 | 1 | AY.39.1 | 0.00004 |
S | 263 | A263V | gCa | gTa | 1 | 1 | AY.4.2 | 0.000022 |
S | 263 | A263T | Gca | Aca | 1 | 1 | AY.4.2 | 0.000022 |
S | 263 | A263del | GCA | --- | 1 | 1 | AY.4.2 | 0.000022 |
S | 263 | A263Y | GCA | TAC | 1 | 1 | AY.4.2 | 0.000022 |
S | 263 | A263A | gcA | gcG | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 263 | A263E | gCa | gAa | 1 | 1 | AY.42 | 0.00004 |
S | 263 | A263D | gCA | gAC | 1 | 1 | AY.42 | 0.00004 |
S | 263 | A263X | GCa | TAa | 1 | 1 | AY.42 | 0.00004 |
S | 263 | A263Y | GCA | TAC | 1 | 1 | AY.42 | 0.00004 |
S | 263 | A263E | gCa | gAa | 1 | 1 | AY.43 | 0.000004 |
S | 263 | A263Y | GCA | TAT | 1 | 1 | AY.43 | 0.000004 |
S | 263 | A263D | gCA | gAT | 1 | 1 | AY.44 | 0.000006 |
S | 263 | A263E | gCa | gAa | 1 | 1 | AY.44 | 0.000006 |
S | 263 | A263del | GCA | --- | 1 | 1 | AY.44 | 0.000006 |
S | 263 | A263X | GCa | TAa | 1 | 1 | AY.44 | 0.000006 |
S | 263 | A263L | GCA | TTG | 1 | 1 | AY.44 | 0.000006 |
S | 263 | A263Y | GCA | TAT | 1 | 1 | AY.44 | 0.000006 |
S | 263 | A263T | Gca | Aca | 1 | 1 | AY.46 | 0.000104 |
S | 263 | A263V | gCa | gTa | 1 | 1 | AY.46 | 0.000104 |
S | 263 | A263A | gcA | gcC | 1 | 1 | AY.46 | 0.000104 |
S | 263 | A263A | gcA | gcG | 1 | 1 | AY.46.6 | 0.000072 |
S | 263 | A263E | gCa | gAa | 1 | 1 | AY.47 | 0.000031 |
S | 263 | A263S | Gca | Tca | 1 | 1 | AY.47 | 0.000031 |
S | 263 | A263del | GCA | --- | 1 | 1 | AY.47 | 0.000031 |
S | 263 | A263T | GcA | AcT | 1 | 1 | AY.47 | 0.000031 |
S | 263 | A263A | gcA | gcC | 1 | 1 | AY.5 | 0.000021 |
S | 263 | A263T | Gca | Aca | 1 | 1 | AY.51 | 0.000909 |
S | 263 | A263del | GCA | --- | 1 | 1 | AY.51 | 0.000909 |
S | 263 | A263del | GCA | --- | 1 | 1 | AY.59 | 0.00053 |
S | 263 | A263A | gcA | gcT | 1 | 1 | AY.59 | 0.00053 |
S | 263 | A263G | gCA | gGT | 1 | 1 | AY.61 | 0.000105 |
S | 263 | A263V | gCa | gTa | 1 | 1 | AY.61 | 0.000105 |
S | 263 | A263E | gCa | gAa | 1 | 1 | AY.61 | 0.000105 |
S | 263 | A263del | GCA | --- | 1 | 1 | AY.61 | 0.000105 |
S | 263 | A263del | GCA | --- | 1 | 1 | AY.62 | 0.000436 |
S | 263 | A263T | GcA | AcT | 1 | 1 | AY.71 | 0.000475 |
S | 263 | A263V | gCa | gTa | 1 | 1 | AY.75 | 0.000056 |
S | 263 | A263A | gcA | gcC | 1 | 1 | AY.75 | 0.000056 |
S | 263 | A263del | GCA | --- | 1 | 1 | AY.75.1 | 0.00018 |
S | 263 | A263A | gcA | gcC | 1 | 1 | AY.75.1 | 0.00018 |
S | 263 | A263V | gCa | gTa | 1 | 1 | AY.84 | 0.000437 |
S | 263 | A263del | GCA | --- | 1 | 1 | AY.84 | 0.000437 |
S | 263 | A263S | Gca | Tca | 1 | 1 | AY.86 | 0.00083 |
S | 263 | A263del | GCA | --- | 1 | 1 | AY.9 | 0.000068 |
S | 263 | A263T | Gca | Aca | 1 | 1 | AY.9.1 | 0.000084 |
S | 263 | A263del | GCA | --- | 1 | 1 | AY.9.1 | 0.000084 |
S | 263 | A263del | GCA | --- | 1 | 1 | AY.90 | 0.000684 |
S | 263 | A263del | GCA | --- | 1 | 1 | AY.95 | 0.000761 |
S | 263 | A263A | gcA | gcT | 1 | 1 | AY.99 | 0.001049 |
S | 263 | A263A | gcA | gcT | 1 | 1 | AY.99.2 | 0.000092 |
S | 263 | A263G | gCa | gGa | 1 | 1 | B.1 | 0.000009 |
S | 263 | A263del | GCA | --- | 1 | 1 | B.1.1.192 | 0.002309 |
S | 263 | A263A | gcA | gcT | 1 | 1 | B.1.1.210 | 0.005714 |
S | 263 | A263V | gCa | gTa | 1 | 1 | B.1.1.214 | 0.000055 |
S | 263 | A263A | gcA | gcT | 1 | 1 | B.1.1.220 | 0.001859 |
S | 263 | A263A | gcA | gcT | 1 | 1 | B.1.1.226 | 0.005814 |
S | 263 | A263A | gcA | gcT | 1 | 1 | B.1.1.230 | 0.009174 |
S | 263 | A263A | gcA | gcC | 1 | 1 | B.1.1.265 | 0.003155 |
S | 263 | A263V | gCa | gTa | 1 | 1 | B.1.1.291 | 0.000742 |
S | 263 | A263S | Gca | Tca | 1 | 1 | B.1.1.298 | 0.000862 |
S | 263 | A263S | Gca | Tca | 1 | 1 | B.1.1.306 | 0.000438 |
S | 263 | A263del1 | GcA | -cT | 1 | 1 | B.1.1.306 | 0.000438 |
S | 263 | A263A | gcA | gcT | 1 | 1 | B.1.1.306 | 0.000438 |
S | 263 | A263T | Gca | Aca | 1 | 1 | B.1.1.317 | 0.000412 |
S | 263 | A263S | Gca | Tca | 1 | 1 | B.1.1.317 | 0.000412 |
S | 263 | A263V | gCa | gTa | 1 | 1 | B.1.1.317 | 0.000412 |
S | 263 | A263S | Gca | Tca | 1 | 1 | B.1.1.318 | 0.000302 |
S | 263 | A263A | gcA | gcT | 1 | 1 | B.1.1.326 | 0.001761 |
S | 263 | A263A | gcA | gcT | 1 | 1 | B.1.1.337 | 0.003597 |
S | 263 | A263A | gcA | gcT | 1 | 1 | B.1.1.354 | 0.004386 |
S | 263 | A263A | gcA | gcT | 1 | 1 | B.1.1.356 | 0.008547 |
S | 263 | A263A | gcA | gcT | 1 | 1 | B.1.1.375 | 0.011905 |
S | 263 | A263del | GCA | --- | 1 | 1 | B.1.1.517 | 0.006803 |
S | 263 | A263V | gCa | gTa | 1 | 1 | B.1.1.519 | 0.00004 |
S | 263 | A263L | GCa | TTa | 1 | 1 | B.1.1.7 | 0.000001 |
S | 263 | A263V | gCa | gTa | 1 | 1 | B.1.1.70 | 0.000341 |
S | 263 | A263T | Gca | Aca | 1 | 1 | B.1.160.9 | 0.007194 |
S | 263 | A263G | gCA | gGT | 1 | 1 | B.1.177 | 0.000013 |
S | 263 | A263T | Gca | Aca | 1 | 1 | B.1.177.15 | 0.000631 |
S | 263 | A263V | gCa | gTa | 1 | 1 | B.1.177.4 | 0.000211 |
S | 263 | A263S | Gca | Tca | 1 | 1 | B.1.177.44 | 0.000519 |
S | 263 | A263A | gcA | gcG | 1 | 1 | B.1.177.45 | 0.000381 |
S | 263 | A263del | GCA | --- | 1 | 1 | B.1.177.52 | 0.001757 |
S | 263 | A263S | Gca | Tca | 1 | 1 | B.1.177.60 | 0.000218 |
S | 263 | A263del | GCA | --- | 1 | 1 | B.1.177.69 | 0.001484 |
S | 263 | A263S | Gca | Tca | 1 | 1 | B.1.177.73 | 0.000566 |
S | 263 | A263S | Gca | Tca | 1 | 1 | B.1.177.80 | 0.001912 |
S | 263 | A263S | Gca | Tca | 1 | 1 | B.1.177.81 | 0.000189 |
S | 263 | A263V | gCa | gTa | 1 | 1 | B.1.177.9 | 0.001332 |
S | 263 | A263E | gCa | gAa | 1 | 1 | B.1.2 | 0.000009 |
S | 263 | A263del1 | Gca | -ca | 1 | 1 | B.1.2 | 0.000009 |
S | 263 | A263V | gCa | gTa | 1 | 1 | B.1.210 | 0.002132 |
S | 263 | A263del | GCA | --- | 1 | 1 | B.1.221 | 0.000071 |
S | 263 | A263A | gcA | gcC | 1 | 1 | B.1.221 | 0.000071 |
S | 263 | A263S | Gca | Tca | 1 | 1 | B.1.232 | 0.000537 |
S | 263 | A263E | gCa | gAa | 1 | 1 | B.1.236 | 0.002053 |
S | 263 | A263A | gcA | gcT | 1 | 1 | B.1.236 | 0.002053 |
S | 263 | A263A | gcA | gcG | 1 | 1 | B.1.240 | 0.000216 |
S | 263 | A263A | gcA | gcT | 1 | 1 | B.1.241 | 0.000812 |
S | 263 | A263S | Gca | Tca | 1 | 1 | B.1.243 | 0.00007 |
S | 263 | A263V | gCa | gTa | 1 | 1 | B.1.243 | 0.00007 |
S | 263 | A263A | gcA | gcG | 1 | 1 | B.1.243 | 0.00007 |
S | 263 | A263V | gCa | gTa | 1 | 1 | B.1.258 | 0.000067 |
S | 263 | A263V | gCa | gTa | 1 | 1 | B.1.258.17 | 0.000104 |
S | 263 | A263A | gcA | gcT | 1 | 1 | B.1.258.17 | 0.000104 |
S | 263 | A263A | gcA | gcT | 1 | 1 | B.1.265 | 0.001271 |
S | 263 | A263A | gcA | gcT | 1 | 1 | B.1.305 | 0.002151 |
S | 263 | A263S | Gca | Tca | 1 | 1 | B.1.306 | 0.005714 |
S | 263 | A263del | GCA | --- | 1 | 1 | B.1.311 | 0.000275 |
S | 263 | A263A | gcA | gcT | 1 | 1 | B.1.334 | 0.018182 |
S | 263 | A263A | gcA | gcT | 1 | 1 | B.1.336 | 0.002439 |
S | 263 | A263V | gCa | gTa | 1 | 1 | B.1.351 | 0.00003 |
S | 263 | A263E | gCa | gAa | 1 | 1 | B.1.351 | 0.00003 |
S | 263 | A263S | Gca | Tca | 1 | 1 | B.1.351.3 | 0.000876 |
S | 263 | A263A | gcA | gcT | 1 | 1 | B.1.355 | 0.011111 |
S | 263 | A263V | gCa | gTa | 1 | 1 | B.1.36 | 0.000146 |
S | 263 | A263E | gCa | gAa | 1 | 1 | B.1.36 | 0.000146 |
S | 263 | A263del | GCA | --- | 1 | 1 | B.1.36 | 0.000146 |
S | 263 | A263del | GCA | --- | 1 | 1 | B.1.36.18 | 0.00042 |
S | 263 | A263V | gCa | gTa | 1 | 1 | B.1.36.22 | 0.001208 |
S | 263 | A263S | Gca | Tca | 1 | 1 | B.1.36.31 | 0.001751 |
S | 263 | A263V | gCa | gTa | 1 | 1 | B.1.367 | 0.000792 |
S | 263 | A263A | gcA | gcG | 1 | 1 | B.1.399 | 0.001934 |
S | 263 | A263S | Gca | Tca | 1 | 1 | B.1.401 | 0.008197 |
S | 263 | A263V | gCa | gTa | 1 | 1 | B.1.409 | 0.000781 |
S | 263 | A263del | GCA | --- | 1 | 1 | B.1.416.1 | 0.001563 |
S | 263 | A263S | Gca | Tca | 1 | 1 | B.1.427 | 0.00005 |
S | 263 | A263T | Gca | Aca | 1 | 1 | B.1.429 | 0.000024 |
S | 263 | A263del | GCA | --- | 1 | 1 | B.1.429 | 0.000024 |
S | 263 | A263T | Gca | Aca | 1 | 1 | B.1.456 | 0.003268 |
S | 263 | A263S | Gca | Tca | 1 | 1 | B.1.460 | 0.017857 |
S | 263 | A263A | gcA | gcT | 1 | 1 | B.1.466.2 | 0.000391 |
S | 263 | A263E | gCa | gAa | 1 | 1 | B.1.526 | 0.000024 |
S | 263 | A263A | gcA | gcT | 1 | 1 | B.1.538 | 0.008065 |
S | 263 | A263S | Gca | Tca | 1 | 1 | B.1.560 | 0.00463 |
S | 263 | A263del | GCA | --- | 1 | 1 | B.1.561 | 0.000397 |
S | 263 | A263A | gcA | gcT | 1 | 1 | B.1.561 | 0.000397 |
S | 263 | A263A | gcA | gcT | 1 | 1 | B.1.565 | 0.00081 |
S | 263 | A263del1 | gcA | gc- | 1 | 1 | B.1.568 | 0.001111 |
S | 263 | A263A | gcA | gcT | 1 | 1 | B.1.574 | 0.002151 |
S | 263 | A263A | gcA | gcT | 1 | 1 | B.1.582 | 0.000491 |
S | 263 | A263G | gCa | gGa | 1 | 1 | B.1.595 | 0.000261 |
S | 263 | A263del | GCA | --- | 1 | 1 | B.1.609 | 0.000479 |
S | 263 | A263del | GCA | --- | 1 | 1 | B.1.617.1 | 0.000129 |
S | 263 | A263T | Gca | Aca | 1 | 1 | B.1.617.1 | 0.000129 |
S | 263 | A263E | gCa | gAa | 1 | 1 | B.1.617.1 | 0.000129 |
S | 263 | A263E | gCa | gAa | 1 | 1 | B.1.617.2 | 0.000004 |
S | 263 | A263A | gcA | gcT | 1 | 1 | B.1.621 | 0.000089 |
S | 263 | A263S | Gca | Tca | 1 | 1 | B.1.621 | 0.000089 |
S | 263 | A263T | Gca | Aca | 1 | 1 | B.1.621 | 0.000089 |
S | 263 | A263del | GCA | --- | 1 | 1 | B.1.621.1 | 0.000506 |
S | 263 | A263T | Gca | Aca | 1 | 1 | B.1.621.1 | 0.000506 |
S | 263 | A263del | GCA | --- | 1 | 1 | B.1.627 | 0.00202 |
S | 263 | A263E | gCa | gAa | 1 | 1 | B.4 | 0.002208 |
S | 263 | A263V | gCa | gTa | 1 | 1 | B.4 | 0.002208 |
S | 263 | A263del | GCA | --- | 1 | 1 | B.55 | 0.00295 |
S | 263 | A263del | GCA | --- | 1 | 1 | C.16 | 0.00106 |
S | 263 | A263S | Gca | Tca | 1 | 1 | C.36 | 0.000911 |
S | 263 | A263A | gcA | gcT | 1 | 1 | C.36.3 | 0.000567 |
S | 263 | A263T | Gca | Aca | 1 | 1 | C.37 | 0.000116 |
S | 263 | A263V | gCa | gTa | 1 | 1 | C.37.1 | 0.002618 |
S | 263 | A263V | gCa | gTa | 1 | 1 | D.2 | 0.000075 |
S | 263 | A263A | gcA | gcT | 1 | 1 | D.2 | 0.000075 |
S | 263 | A263G | gCa | gGa | 1 | 1 | D.2 | 0.000075 |
S | 263 | A263E | gCa | gAa | 1 | 1 | D.2 | 0.000075 |
S | 263 | A263A | gcA | gcT | 1 | 1 | D.3 | 0.005917 |
S | 263 | A263E | gCa | gAa | 1 | 1 | P.1 | 0.000016 |
S | 263 | A263T | Gca | Aca | 1 | 1 | P.1 | 0.000016 |
S | 263 | A263del | GCA | --- | 1 | 1 | P.1.1 | 0.000318 |
S | 263 | A263V | gCa | gTa | 1 | 1 | P.1.15 | 0.000232 |
S | 263 | A263S | Gca | Tca | 1 | 1 | P.1.17 | 0.000162 |
S | 263 | A263G | gCA | gGT | 1 | 1 | P.2 | 0.000187 |
S | 263 | A263del | GCA | --- | 1 | 1 | Q.4 | 0.000455 |
S | 263 | A263A | gcA | gcG | 1 | 1 | Q.4 | 0.000455 |
S | 263 | A263S | Gca | Tca | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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