CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 262

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	262	A262S		nonsyn	Gct	Tct	20915	20896	0.999092	22346-22348
S	262	A262S		nonsyn	GcT	TcG	20915	18	0.000860626	22346-22348
S	262	A262S		nonsyn	GcT	TcA	20915	1	0.0000478126	22346-22348
S	262	A262V		nonsyn	gCt	gTt	1087	1083	0.99632	22346-22348
S	262	A262V		nonsyn	gCT	gTA	1087	2	0.00183993	22346-22348
S	262	A262V		nonsyn	gCT	gTC	1087	1	0.000919963	22346-22348
S	262	A262V		nonsyn	gCT	gTG	1087	1	0.000919963	22346-22348
S	262	A262A		syn	gcT	gcC	489	215	0.439673	22346-22348
S	262	A262A		syn	gcT	gcA	489	141	0.288344	22346-22348
S	262	A262A		syn	gcT	gcG	489	133	0.271984	22346-22348
S	262	A262T		nonsyn	Gct	Act	380	379	0.997368	22346-22348
S	262	A262T		nonsyn	GcT	AcA	380	1	0.00263158	22346-22348
S	262	A262P		nonsyn	Gct	Cct	270	269	0.996296	22346-22348
S	262	A262P		nonsyn	GcT	CcC	270	1	0.0037037	22346-22348
S	262	A262del		del	GCT	---	238	238	1	22346-22348
S	262	A262G		nonsyn	gCt	gGt	105	103	0.980952	22346-22348
S	262	A262G		nonsyn	gCT	gGC	105	1	0.00952381	22346-22348
S	262	A262G		nonsyn	gCT	gGA	105	1	0.00952381	22346-22348
S	262	A262D		nonsyn	gCt	gAt	100	90	0.9	22346-22348
S	262	A262D		nonsyn	gCT	gAC	100	10	0.1	22346-22348
S	262	A262del1		del	GcT	Tc-	35	24	0.685714	22346-22348
S	262	A262del1		del	Gct	-ct	35	7	0.2	22346-22348
S	262	A262del1		del	GcT	Cc-	35	1	0.0285714	22346-22348
S	262	A262del1		del	GcT	Nc-	35	1	0.0285714	22346-22348
S	262	A262del1		del	GCt	-Tt	35	1	0.0285714	22346-22348
S	262	A262del1		del	gcT	gc-	35	1	0.0285714	22346-22348
S	262	A262del2		del	gCT	g--	11	9	0.818182	22346-22348
S	262	A262del2		del	GCT	--N	11	1	0.0909091	22346-22348
S	262	A262del2		del	GCt	--t	11	1	0.0909091	22346-22348
S	262	A262F		nonsyn	GCt	TTt	4	4	1	22346-22348
S	262	A262E		nonsyn	gCT	gAG	4	3	0.75	22346-22348
S	262	A262E		nonsyn	gCT	gAA	4	1	0.25	22346-22348
S	262	A262L		nonsyn	GCT	TTA	2	2	1	22346-22348
S	262	A262K		nonsyn	GCT	AAG	1	1	1	22346-22348
S	262	A262R		nonsyn	GCt	CGt	1	1	1	22346-22348

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	262	A262S	Gct	Tct	20896	20915	All	0.003997
S	262	A262S	GcT	TcG	18	20915	All	0.000003
S	262	A262S	GcT	TcA	1	20915	All	0
S	262	A262S	Gct	Tct	5555	5555	B.1.177	0.073146
S	262	A262S	Gct	Tct	2641	2641	AY.41	0.776308
S	262	A262S	Gct	Tct	1958	1958	B.1.177.82	0.934606
S	262	A262S	Gct	Tct	1325	1325	B.1.177.87	0.964338
S	262	A262S	Gct	Tct	1125	1125	AY.67	0.522284
S	262	A262V	gCt	gTt	1083	1087	All	0.000207
S	262	A262V	gCT	gTA	2	1087	All	0
S	262	A262V	gCT	gTC	1	1087	All	0
S	262	A262V	gCT	gTG	1	1087	All	0
S	262	A262S	Gct	Tct	1059	1059	B.1.177.46	0.972452
S	262	A262S	Gct	Tct	1043	1043	B.1.177.10	0.915716
S	262	A262S	Gct	Tct	686	686	B.1.177.9	0.913449
S	262	A262S	Gct	Tct	645	645	B.1.177.83	0.955556
S	262	A262S	Gct	Tct	593	593	AY.4	0.000923
S	262	A262A	gcT	gcC	215	489	All	0.000041
S	262	A262A	gcT	gcA	141	489	All	0.000027
S	262	A262A	gcT	gcG	133	489	All	0.000025
S	262	A262V	gCt	gTt	473	473	AY.4	0.000736
S	262	A262S	Gct	Tct	461	461	AY.43	0.002042
S	262	A262S	Gct	Tct	414	417	B.1.1.7	0.000371
S	262	A262S	GcT	TcG	3	417	B.1.1.7	0.000003
S	262	A262S	Gct	Tct	390	391	B.1.617.2	0.001469
S	262	A262S	GcT	TcG	1	391	B.1.617.2	0.000004
S	262	A262T	Gct	Act	379	380	All	0.000072
S	262	A262T	GcT	AcA	1	380	All	0
S	262	A262V	gCt	gTt	311	311	B.1.1.7	0.000278
S	262	A262P	Gct	Cct	269	270	All	0.000051
S	262	A262P	GcT	CcC	1	270	All	0
S	262	A262del	GCT	---	238	238	All	0.000046
S	262	A262S	Gct	Tct	229	229	B.1.177.30	0.575377
S	262	A262A	gcT	gcG	106	215	AY.4	0.000165
S	262	A262A	gcT	gcA	77	215	AY.4	0.00012
S	262	A262A	gcT	gcC	32	215	AY.4	0.00005
S	262	A262S	Gct	Tct	161	161	B.1.2	0.001418
S	262	A262S	Gct	Tct	154	154	B.1.160	0.004803
S	262	A262S	Gct	Tct	139	147	B.1	0.001273
S	262	A262S	GcT	TcG	7	147	B.1	0.000064
S	262	A262S	GcT	TcA	1	147	B.1	0.000009
S	262	A262S	Gct	Tct	144	144	AY.102	0.003818
S	262	A262S	Gct	Tct	141	141	B.1.177.84	0.94
S	262	A262S	Gct	Tct	126	126	AY.39	0.003114
S	262	A262P	Gct	Cct	108	108	AY.6	0.004442
S	262	A262G	gCt	gGt	103	105	All	0.00002
S	262	A262G	gCT	gGC	1	105	All	0
S	262	A262G	gCT	gGA	1	105	All	0
S	262	A262S	Gct	Tct	103	103	AY.120	0.003829
S	262	A262D	gCt	gAt	90	100	All	0.000017
S	262	A262D	gCT	gAC	10	100	All	0.000002
S	262	A262S	Gct	Tct	97	97	P.1.2	0.112139
S	262	A262S	Gct	Tct	89	90	B.1.1	0.001615
S	262	A262S	GcT	TcG	1	90	B.1.1	0.000018
S	262	A262S	Gct	Tct	90	90	C.37	0.010446
S	262	A262S	Gct	Tct	80	80	AY.98.1	0.003874
S	262	A262S	Gct	Tct	79	79	B.1.177.88	0.975309
S	262	A262P	Gct	Cct	70	70	AY.102	0.001856
S	262	A262S	Gct	Tct	59	59	AY.44	0.000359
S	262	A262T	Gct	Act	59	59	B.1.1.7	0.000053
S	262	A262S	Gct	Tct	58	58	P.1	0.000914
S	262	A262A	gcT	gcC	43	56	B.1.1.7	0.000038
S	262	A262A	gcT	gcA	10	56	B.1.1.7	0.000009
S	262	A262A	gcT	gcG	3	56	B.1.1.7	0.000003
S	262	A262del	GCT	---	54	54	B.1.1.7	0.000048
S	262	A262P	Gct	Cct	50	50	B.1.617.2	0.000188
S	262	A262S	Gct	Tct	48	48	B.1.604	0.827586
S	262	A262S	Gct	Tct	47	47	AY.4.3	0.039562
S	262	A262T	Gct	Act	45	45	B.1.2	0.000396
S	262	A262S	Gct	Tct	44	44	AY.3	0.000438
S	262	A262T	Gct	Act	44	44	B.1	0.000403
S	262	A262V	gCt	gTt	40	40	B.1.617.2	0.000151
S	262	A262S	Gct	Tct	39	39	AY.103	0.000242
S	262	A262del1	GcT	Tc-	24	35	All	0.000005
S	262	A262del1	Gct	-ct	7	35	All	0.000001
S	262	A262del1	GCt	-Tt	1	35	All	0
S	262	A262del1	GcT	Nc-	1	35	All	0
S	262	A262del1	gcT	gc-	1	35	All	0
S	262	A262del1	GcT	Cc-	1	35	All	0
S	262	A262S	Gct	Tct	33	33	AY.25	0.000198
S	262	A262S	Gct	Tct	32	32	AY.29	0.000505
S	262	A262S	Gct	Tct	29	29	B.1.243	0.002018
S	262	A262S	Gct	Tct	28	28	B.1.8	0.055227
S	262	A262S	Gct	Tct	25	25	P.1.17	0.004044
S	262	A262S	Gct	Tct	24	24	AY.20	0.000933
S	262	A262S	Gct	Tct	24	24	B.1.234	0.003167
S	262	A262V	gCt	gTt	23	23	AY.27	0.001489
S	262	A262V	gCt	gTt	23	23	AY.43	0.000102
S	262	A262G	gCt	gGt	23	23	B.1.351	0.000684
S	262	A262del	GCT	---	22	22	AY.43	0.000097
S	262	A262S	Gct	Tct	21	21	AY.4.2	0.000455
S	262	A262S	Gct	Tct	21	21	B.1.177.89	0.512195
S	262	A262T	Gct	Act	20	20	AY.4	0.000031
S	262	A262S	Gct	Tct	20	20	B.1.526	0.00047
S	262	A262S	Gct	Tct	19	19	B.1.177.69	0.02819
S	262	A262S	Gct	Tct	18	19	B.1.36	0.002626
S	262	A262S	GcT	TcG	1	19	B.1.36	0.000146
S	262	A262T	Gct	Act	19	19	B.1.617.2	0.000072
S	262	A262S	Gct	Tct	18	18	AY.12	0.005689
S	262	A262S	Gct	Tct	18	18	AY.33	0.001202
S	262	A262V	gCt	gTt	18	18	AY.44	0.00011
S	262	A262S	Gct	Tct	18	18	B.1.177.16	0.01196
S	262	A262S	Gct	Tct	17	17	AY.5	0.000351
S	262	A262S	Gct	Tct	17	17	B.1.429	0.0004
S	262	A262S	Gct	Tct	16	16	AY.26	0.000453
S	262	A262S	Gct	Tct	16	16	B.1.1.39	0.008155
S	262	A262S	Gct	Tct	15	15	AY.121	0.00203
S	262	A262A	gcT	gcC	15	15	AY.26	0.000425
S	262	A262S	Gct	Tct	15	15	AY.30	0.005936
S	262	A262S	Gct	Tct	15	15	AY.37	0.004741
S	262	A262T	Gct	Act	14	14	AY.119	0.000494
S	262	A262T	Gct	Act	14	14	AY.43	0.000062
S	262	A262D	gCt	gAt	10	14	B.1.1.7	0.000009
S	262	A262D	gCT	gAC	4	14	B.1.1.7	0.000004
S	262	A262V	gCt	gTt	14	14	C.37	0.001625
S	262	A262S	Gct	Tct	13	13	AY.119	0.000459
S	262	A262G	gCt	gGt	13	13	AY.39	0.000321
S	262	A262S	Gct	Tct	13	13	B.1.595	0.003392
S	262	A262V	gCt	gTt	12	12	AY.34	0.001164
S	262	A262A	gcT	gcC	12	12	B.1.1.519	0.000477
S	262	A262S	Gct	Tct	12	12	B.1.351	0.000357
S	262	A262V	gCt	gTt	12	12	B.1.351	0.000357
S	262	A262del	GCT	---	12	12	B.1.351	0.000357
S	262	A262G	gCt	gGt	12	12	B.1.617.2	0.000045
S	262	A262del	GCT	---	12	12	B.1.617.2	0.000045
S	262	A262A	gcT	gcA	6	12	B.1.617.2	0.000023
S	262	A262A	gcT	gcG	3	12	B.1.617.2	0.000011
S	262	A262A	gcT	gcC	3	12	B.1.617.2	0.000011
S	262	A262del2	gCT	g--	9	11	All	0.000002
S	262	A262del2	GCt	--t	1	11	All	0
S	262	A262del2	GCT	--N	1	11	All	0
S	262	A262S	Gct	Tct	11	11	B.1.1.312	0.021033
S	262	A262del1	GcT	Tc-	11	11	B.1.1.7	0.00001
S	262	A262S	Gct	Tct	11	11	B.1.258	0.000732
S	262	A262T	Gct	Act	11	11	B.1.351	0.000327
S	262	A262D	gCt	gAt	10	10	AY.39	0.000247
S	262	A262A	gcT	gcC	10	10	AY.47	0.000311
S	262	A262S	Gct	Tct	10	10	AY.74	0.001156
S	262	A262del1	GcT	Tc-	10	10	B.1	0.000092
S	262	A262G	gCt	gGt	10	10	B.1.1.7	0.000009
S	262	A262S	Gct	Tct	10	10	B.1.126	0.012755
S	262	A262V	gCt	gTt	10	10	B.1.177.60	0.002184
S	262	A262S	Gct	Tct	10	10	B.1.258.17	0.00104
S	262	A262S	Gct	Tct	10	10	B.1.369	0.002852
S	262	A262A	gcT	gcC	10	10	B.1.427	0.000505
S	262	A262S	Gct	Tct	10	10	B.1.621	0.000885
S	262	A262T	Gct	Act	10	10	D.2	0.00075
S	262	A262S	Gct	Tct	10	10	P.1.14	0.000478
S	262	A262S	Gct	Tct	9	9	AY.118	0.000564
S	262	A262A	gcT	gcC	9	9	AY.25	0.000054
S	262	A262D	gCt	gAt	9	9	AY.29	0.000142
S	262	A262A	gcT	gcC	6	9	AY.39	0.000148
S	262	A262A	gcT	gcG	3	9	AY.39	0.000074
S	262	A262S	Gct	Tct	9	9	AY.62	0.003922
S	262	A262V	gCt	gTt	9	9	B.1.1	0.000163
S	262	A262A	gcT	gcA	7	9	B.1.177	0.000092
S	262	A262A	gcT	gcG	2	9	B.1.177	0.000026
S	262	A262A	gcT	gcA	6	9	B.1.2	0.000053
S	262	A262A	gcT	gcC	3	9	B.1.2	0.000026
S	262	A262V	gCt	gTt	9	9	P.1	0.000142
S	262	A262del	GCT	---	9	9	P.1	0.000142
S	262	A262S	Gct	Tct	8	8	AY.116.1	0.002491
S	262	A262S	Gct	Tct	8	8	AY.24	0.003448
S	262	A262S	Gct	Tct	8	8	AY.42	0.000322
S	262	A262S	Gct	Tct	8	8	AY.98	0.000632
S	262	A262G	gCt	gGt	8	8	B.1	0.000073
S	262	A262S	Gct	Tct	8	8	B.1.1.1	0.002614
S	262	A262S	Gct	Tct	8	8	B.1.1.263	0.012461
S	262	A262S	Gct	Tct	8	8	B.1.1.318	0.002414
S	262	A262S	Gct	Tct	8	8	B.1.160.23	0.038647
S	262	A262S	Gct	Tct	8	8	B.1.177.33	0.013158
S	262	A262S	Gct	Tct	8	8	B.1.177.86	0.001468
S	262	A262T	Gct	Act	8	8	B.1.526	0.000188
S	262	A262S	Gct	Tct	8	8	P.2	0.001493
S	262	A262A	gcT	gcA	4	7	AY.102	0.000106
S	262	A262A	gcT	gcC	3	7	AY.102	0.00008
S	262	A262S	Gct	Tct	7	7	AY.106	0.002344
S	262	A262A	gcT	gcC	6	7	AY.20	0.000233
S	262	A262A	gcT	gcA	1	7	AY.20	0.000039
S	262	A262V	gCt	gTt	7	7	AY.25	0.000042
S	262	A262T	Gct	Act	7	7	AY.3	0.00007
S	262	A262S	Gct	Tct	7	7	AY.9.2	0.000257
S	262	A262del	GCT	---	7	7	AY.9.2	0.000257
S	262	A262S	Gct	Tct	7	7	AY.99.2	0.000645
S	262	A262V	gCt	gTt	7	7	B.1	0.000064
S	262	A262T	Gct	Act	7	7	B.1.1	0.000127
S	262	A262S	Gct	Tct	7	7	B.1.221	0.000497
S	262	A262S	Gct	Tct	7	7	B.1.408	0.02583
S	262	A262D	gCt	gAt	4	7	B.1.617.2	0.000015
S	262	A262D	gCT	gAC	3	7	B.1.617.2	0.000011
S	262	A262S	Gct	Tct	7	7	B.1.637	0.000512
S	262	A262S	Gct	Tct	7	7	L.1	0.013333
S	262	A262A	gcT	gcA	3	6	AY.103	0.000019
S	262	A262A	gcT	gcC	3	6	AY.103	0.000019
S	262	A262A	gcT	gcC	6	6	AY.23	0.000418
S	262	A262A	gcT	gcA	3	6	AY.43	0.000013
S	262	A262A	gcT	gcG	2	6	AY.43	0.000009
S	262	A262A	gcT	gcC	1	6	AY.43	0.000004
S	262	A262A	gcT	gcC	4	6	AY.44	0.000024
S	262	A262A	gcT	gcA	1	6	AY.44	0.000006
S	262	A262A	gcT	gcG	1	6	AY.44	0.000006
S	262	A262S	Gct	Tct	6	6	AY.75	0.000336
S	262	A262S	Gct	Tct	6	6	AY.94	0.002656
S	262	A262D	gCt	gAt	6	6	B.1	0.000055
S	262	A262del	GCT	---	6	6	B.1	0.000055
S	262	A262P	Gct	Cct	6	6	B.1.1.7	0.000005
S	262	A262S	Gct	Tct	6	6	B.1.177.23	0.019417
S	262	A262S	Gct	Tct	6	6	B.1.177.8	0.004515
S	262	A262S	Gct	Tct	6	6	B.1.36.17	0.002964
S	262	A262S	Gct	Tct	6	6	B.1.366	0.029268
S	262	A262S	Gct	Tct	6	6	B.1.427	0.000303
S	262	A262T	Gct	Act	6	6	B.1.429	0.000141
S	262	A262del	GCT	---	6	6	B.1.525	0.000679
S	262	A262T	Gct	Act	6	6	B.1.596	0.000523
S	262	A262V	gCt	gTt	5	5	AY.103	0.000031
S	262	A262G	gCt	gGt	5	5	AY.23	0.000349
S	262	A262del	GCT	---	5	5	AY.29	0.000079
S	262	A262V	gCt	gTt	5	5	AY.39	0.000124
S	262	A262S	Gct	Tct	5	5	AY.47	0.000156
S	262	A262S	Gct	Tct	5	5	AY.54	0.000477
S	262	A262T	Gct	Act	5	5	AY.99.2	0.000461
S	262	A262G	gCt	gGt	5	5	B.1.1	0.000091
S	262	A262A	gcT	gcC	3	5	B.1.1	0.000054
S	262	A262A	gcT	gcA	2	5	B.1.1	0.000036
S	262	A262S	Gct	Tct	5	5	B.1.1.135	0.023474
S	262	A262A	gcT	gcA	3	5	B.1.1.318	0.000905
S	262	A262A	gcT	gcC	2	5	B.1.1.318	0.000604
S	262	A262V	gCt	gTt	5	5	B.1.1.519	0.000199
S	262	A262T	Gct	Act	5	5	B.1.1.519	0.000199
S	262	A262S	Gct	Tct	5	5	B.1.1.519	0.000199
S	262	A262T	Gct	Act	5	5	B.1.177	0.000066
S	262	A262S	Gct	Tct	5	5	B.1.324	0.008026
S	262	A262del	GCT	---	5	5	B.1.351.2	0.001513
S	262	A262S	Gct	Tct	5	5	B.1.36.29	0.002587
S	262	A262S	Gct	Tct	5	5	B.1.596	0.000436
S	262	A262del	GCT	---	5	5	B.1.621	0.000443
S	262	A262S	Gct	Tct	5	5	B.1.628	0.001762
S	262	A262S	Gct	Tct	5	5	C.36	0.004554
S	262	A262P	Gct	Cct	5	5	P.1.14	0.000239
S	262	A262S	Gct	Tct	5	5	P.1.15	0.001162
S	262	A262del	GCT	---	5	5	P.1.15	0.001162
S	262	A262F	GCt	TTt	4	4	All	0.000001
S	262	A262E	gCT	gAG	3	4	All	0.000001
S	262	A262E	gCT	gAA	1	4	All	0
S	262	A262S	Gct	Tct	4	4	AY.100	0.000184
S	262	A262S	Gct	Tct	4	4	AY.117	0.000338
S	262	A262T	Gct	Act	4	4	AY.25	0.000024
S	262	A262del	GCT	---	4	4	AY.25	0.000024
S	262	A262D	gCt	gAt	4	4	AY.26	0.000113
S	262	A262T	Gct	Act	4	4	AY.26	0.000113
S	262	A262V	gCt	gTt	4	4	AY.29	0.000063
S	262	A262V	gCt	gTt	4	4	AY.4.2	0.000087
S	262	A262V	gCt	gTt	4	4	AY.45	0.000487
S	262	A262S	Gct	Tct	4	4	AY.46	0.000416
S	262	A262A	gcT	gcC	3	4	AY.5	0.000062
S	262	A262A	gcT	gcA	1	4	AY.5	0.000021
S	262	A262S	Gct	Tct	4	4	AY.52	0.003257
S	262	A262S	Gct	Tct	4	4	AY.61	0.000419
S	262	A262del	GCT	---	4	4	AY.71	0.0019
S	262	A262S	Gct	Tct	4	4	AY.90	0.002738
S	262	A262S	Gct	Tct	4	4	B.1.1.222	0.000816
S	262	A262S	Gct	Tct	4	4	B.1.1.348	0.003185
S	262	A262del2	gCT	g--	4	4	B.1.1.7	0.000004
S	262	A262S	Gct	Tct	4	4	B.1.1.70	0.001364
S	262	A262S	Gct	Tct	4	4	B.1.1.89	0.024242
S	262	A262T	Gct	Act	4	4	B.1.160	0.000125
S	262	A262V	gCt	gTt	4	4	B.1.177.12	0.000607
S	262	A262S	Gct	Tct	4	4	B.1.177.44	0.002076
S	262	A262S	Gct	Tct	4	4	B.1.177.65	0.002661
S	262	A262V	gCt	gTt	4	4	B.1.2	0.000035
S	262	A262T	Gct	Act	4	4	B.1.221	0.000284
S	262	A262S	Gct	Tct	4	4	B.1.367	0.00317
S	262	A262S	Gct	Tct	4	4	B.1.382	0.035714
S	262	A262A	gcT	gcC	4	4	B.1.526	0.000094
S	262	A262V	gCt	gTt	4	4	B.1.617.1	0.000516
S	262	A262S	Gct	Tct	4	4	B.1.618	0.016129
S	262	A262A	gcT	gcC	4	4	B.1.637	0.000292
S	262	A262S	Gct	Tct	4	4	B.40	0.001457
S	262	A262A	gcT	gcA	4	4	C.37	0.000464
S	262	A262A	gcT	gcA	2	4	P.1	0.000032
S	262	A262A	gcT	gcC	1	4	P.1	0.000016
S	262	A262A	gcT	gcG	1	4	P.1	0.000016
S	262	A262A	gcT	gcG	4	4	P.1.10	0.001078
S	262	A262T	Gct	Act	3	3	AY.102	0.00008
S	262	A262V	gCt	gTt	3	3	AY.102	0.00008
S	262	A262del	GCT	---	3	3	AY.102	0.00008
S	262	A262T	Gct	Act	3	3	AY.116	0.00086
S	262	A262S	Gct	Tct	3	3	AY.14	0.000264
S	262	A262del	GCT	---	3	3	AY.3	0.00003
S	262	A262V	gCt	gTt	3	3	AY.3	0.00003
S	262	A262S	Gct	Tct	3	3	AY.32	0.001597
S	262	A262del	GCT	---	3	3	AY.33	0.0002
S	262	A262P	Gct	Cct	3	3	AY.39	0.000074
S	262	A262del	GCT	---	3	3	AY.4	0.000005
S	262	A262V	gCt	gTt	3	3	AY.4.5	0.000322
S	262	A262V	gCt	gTt	2	3	AY.42	0.00008
S	262	A262V	gCT	gTA	1	3	AY.42	0.00004
S	262	A262S	Gct	Tct	3	3	AY.45	0.000365
S	262	A262T	Gct	Act	3	3	AY.46.6	0.000217
S	262	A262S	Gct	Tct	3	3	AY.5.3	0.001012
S	262	A262S	Gct	Tct	3	3	AY.6	0.000123
S	262	A262D	gCt	gAt	3	3	AY.85	0.001282
S	262	A262S	Gct	Tct	3	3	AY.9	0.000203
S	262	A262A	gcT	gcC	3	3	B.1	0.000027
S	262	A262F	GCt	TTt	3	3	B.1.1	0.000054
S	262	A262D	gCt	gAt	3	3	B.1.1.39	0.001529
S	262	A262D	gCt	gAt	3	3	B.1.160	0.000094
S	262	A262S	Gct	Tct	3	3	B.1.160.30	0.008929
S	262	A262S	Gct	Tct	3	3	B.1.177.17	0.002463
S	262	A262S	Gct	Tct	3	3	B.1.177.63	0.008108
S	262	A262S	Gct	Tct	3	3	B.1.177.73	0.001699
S	262	A262del	GCT	---	3	3	B.1.2	0.000026
S	262	A262D	gCt	gAt	3	3	B.1.2	0.000026
S	262	A262A	gcT	gcC	3	3	B.1.210	0.006397
S	262	A262A	gcT	gcC	3	3	B.1.221	0.000213
S	262	A262T	Gct	Act	3	3	B.1.243	0.000209
S	262	A262A	gcT	gcA	2	3	B.1.351	0.000059
S	262	A262A	gcT	gcC	1	3	B.1.351	0.00003
S	262	A262V	gCt	gTt	3	3	B.1.36.29	0.001552
S	262	A262V	gCt	gTt	3	3	B.1.369	0.000856
S	262	A262S	Gct	Tct	3	3	B.1.466.2	0.001174
S	262	A262S	Gct	Tct	3	3	B.1.497	0.000944
S	262	A262S	Gct	Tct	3	3	B.1.525	0.000339
S	262	A262D	gCt	gAt	3	3	B.1.526	0.000071
S	262	A262T	Gct	Act	3	3	B.1.595	0.000783
S	262	A262S	Gct	Tct	3	3	B.1.617.1	0.000387
S	262	A262del2	gCT	g--	3	3	B.1.617.2	0.000011
S	262	A262V	gCt	gTt	3	3	B.1.617.3	0.008955
S	262	A262D	gCt	gAt	3	3	P.2	0.00056
S	262	A262del	GCT	---	2	2		0.111111
S	262	A262D	gCt	gAt	2	2		0.111111
S	262	A262E	gCT	gAG	2	2		0.111111
S	262	A262S	Gct	Tct	2	2	A	0.000774
S	262	A262S	Gct	Tct	2	2	A.2.5	0.000998
S	262	A262L	GCT	TTA	2	2	All	0
S	262	A262S	Gct	Tct	2	2	AU.2	0.004843
S	262	A262T	Gct	Act	2	2	AY.100	0.000092
S	262	A262del	GCT	---	2	2	AY.101	0.000981
S	262	A262V	gCt	gTt	2	2	AY.106	0.00067
S	262	A262S	Gct	Tct	2	2	AY.110	0.000225
S	262	A262T	Gct	Act	2	2	AY.117	0.000169
S	262	A262A	gcT	gcC	2	2	AY.119	0.000071
S	262	A262G	gCt	gGt	1	2	AY.119	0.000035
S	262	A262G	gCT	gGC	1	2	AY.119	0.000035
S	262	A262V	gCt	gTt	2	2	AY.120	0.000074
S	262	A262D	gCt	gAt	2	2	AY.121	0.000271
S	262	A262S	Gct	Tct	2	2	AY.13	0.000322
S	262	A262T	Gct	Act	2	2	AY.14	0.000176
S	262	A262S	Gct	Tct	2	2	AY.19	0.002281
S	262	A262T	Gct	Act	2	2	AY.20	0.000078
S	262	A262T	Gct	Act	2	2	AY.23	0.000139
S	262	A262del	GCT	---	2	2	AY.26	0.000057
S	262	A262S	Gct	Tct	2	2	AY.34.1	0.00102
S	262	A262T	Gct	Act	2	2	AY.36	0.000296
S	262	A262S	Gct	Tct	2	2	AY.39.1	0.000079
S	262	A262P	Gct	Cct	2	2	AY.4	0.000003
S	262	A262S	Gct	Tct	2	2	AY.40	0.001929
S	262	A262del	GCT	---	2	2	AY.42	0.00008
S	262	A262P	Gct	Cct	2	2	AY.43	0.000009
S	262	A262G	gCt	gGt	2	2	AY.43	0.000009
S	262	A262D	gCt	gAt	2	2	AY.43	0.000009
S	262	A262T	Gct	Act	2	2	AY.44	0.000012
S	262	A262A	gcT	gcA	1	2	AY.45	0.000122
S	262	A262A	gcT	gcC	1	2	AY.45	0.000122
S	262	A262A	gcT	gcA	2	2	AY.46	0.000208
S	262	A262T	Gct	Act	2	2	AY.46	0.000208
S	262	A262S	Gct	Tct	2	2	AY.46.2	0.001271
S	262	A262S	Gct	Tct	2	2	AY.46.4	0.000329
S	262	A262S	Gct	Tct	2	2	AY.46.6	0.000144
S	262	A262del	GCT	---	2	2	AY.46.6	0.000144
S	262	A262P	Gct	Cct	2	2	AY.46.6	0.000144
S	262	A262V	gCt	gTt	2	2	AY.5	0.000041
S	262	A262S	Gct	Tct	2	2	AY.55	0.001835
S	262	A262S	Gct	Tct	2	2	AY.56	0.00321
S	262	A262T	Gct	Act	2	2	AY.61	0.00021
S	262	A262del	GCT	---	2	2	AY.65	0.001066
S	262	A262del	GCT	---	2	2	AY.67	0.000929
S	262	A262S	Gct	Tct	2	2	AY.68	0.000547
S	262	A262S	Gct	Tct	2	2	AY.71	0.00095
S	262	A262del	GCT	---	2	2	AY.75	0.000112
S	262	A262S	Gct	Tct	2	2	AY.75.1	0.000361
S	262	A262S	Gct	Tct	2	2	AY.84	0.000875
S	262	A262P	Gct	Cct	2	2	AY.84	0.000875
S	262	A262del	GCT	---	2	2	AY.99	0.002099
S	262	A262T	Gct	Act	2	2	B	0.000256
S	262	A262P	Gct	Cct	2	2	B.1	0.000018
S	262	A262D	gCt	gAt	1	2	B.1.1	0.000018
S	262	A262D	gCT	gAC	1	2	B.1.1	0.000018
S	262	A262S	Gct	Tct	2	2	B.1.1.200	0.014925
S	262	A262V	gCt	gTt	2	2	B.1.1.214	0.000111
S	262	A262S	Gct	Tct	2	2	B.1.1.306	0.000877
S	262	A262G	gCt	gGt	2	2	B.1.1.33	0.000842
S	262	A262S	Gct	Tct	2	2	B.1.1.37	0.000386
S	262	A262S	Gct	Tct	2	2	B.1.1.50	0.001358
S	262	A262V	gCt	gTt	2	2	B.1.1.63	0.000772
S	262	A262V	gCt	gTt	2	2	B.1.177	0.000026
S	262	A262del	GCT	---	2	2	B.1.177	0.000026
S	262	A262S	Gct	Tct	2	2	B.1.177.31	0.022989
S	262	A262S	Gct	Tct	2	2	B.1.177.52	0.003515
S	262	A262S	Gct	Tct	2	2	B.1.177.56	0.001335
S	262	A262T	Gct	Act	2	2	B.1.177.86	0.000367
S	262	A262D	gCt	gAt	2	2	B.1.221	0.000142
S	262	A262V	gCt	gTt	2	2	B.1.243	0.000139
S	262	A262del	GCT	---	2	2	B.1.258	0.000133
S	262	A262S	GcT	TcG	2	2	B.1.260	0.006689
S	262	A262D	gCt	gAt	2	2	B.1.351	0.000059
S	262	A262S	Gct	Tct	2	2	B.1.351.2	0.000605
S	262	A262D	gCt	gAt	2	2	B.1.351.2	0.000605
S	262	A262T	Gct	Act	2	2	B.1.36	0.000292
S	262	A262A	gcT	gcG	2	2	B.1.36.29	0.001035
S	262	A262S	Gct	Tct	2	2	B.1.396	0.001411
S	262	A262S	GcT	TcG	2	2	B.1.456	0.006536
S	262	A262T	Gct	Act	2	2	B.1.525	0.000226
S	262	A262S	Gct	Tct	2	2	B.1.537	0.04
S	262	A262T	Gct	Act	2	2	B.1.561	0.000794
S	262	A262del1	GcT	Tc-	2	2	B.1.576	0.001813
S	262	A262del1	GcT	Tc-	1	2	B.1.617.1	0.000129
S	262	A262del1	Gct	-ct	1	2	B.1.617.1	0.000129
S	262	A262del	GCT	---	2	2	B.1.620	0.001892
S	262	A262S	Gct	Tct	2	2	B.1.627	0.00404
S	262	A262del	GCT	---	2	2	B.1.630	0.010471
S	262	A262G	gCt	gGt	2	2	B.6	0.00182
S	262	A262S	Gct	Tct	2	2	C.36.3	0.001134
S	262	A262del	GCT	---	2	2	C.37	0.000232
S	262	A262A	gcT	gcC	2	2	D.2	0.00015
S	262	A262S	Gct	Tct	2	2	D.2	0.00015
S	262	A262T	Gct	Act	2	2	P.1	0.000032
S	262	A262V	gCt	gTt	2	2	Q.8	0.00033
S	262	A262S	Gct	Tct	2	2	Q.8	0.00033
S	262	A262del	GCT	---	1	1	A	0.000387
S	262	A262V	gCt	gTt	1	1	A.2.3	0.004739
S	262	A262S	Gct	Tct	1	1	A.2.4	0.003367
S	262	A262del	GCT	---	1	1	A.2.5	0.000499
S	262	A262S	Gct	Tct	1	1	A.23.1	0.000704
S	262	A262T	Gct	Act	1	1	A.23.1	0.000704
S	262	A262S	Gct	Tct	1	1	A.27	0.001656
S	262	A262S	Gct	Tct	1	1	A.6	0.005128
S	262	A262T	Gct	Act	1	1	AD.2	0.000219
S	262	A262S	Gct	Tct	1	1	AD.2	0.000219
S	262	A262S	Gct	Tct	1	1	AL.1	0.012987
S	262	A262R	GCt	CGt	1	1	All	0
S	262	A262K	GCT	AAG	1	1	All	0
S	262	A262T	Gct	Act	1	1	AM.4	0.003571
S	262	A262del	GCT	---	1	1	AV.1	0.005051
S	262	A262del1	GcT	Nc-	1	1	AY.102	0.000027
S	262	A262P	Gct	Cct	1	1	AY.103	0.000006
S	262	A262T	Gct	Act	1	1	AY.103	0.000006
S	262	A262del	GCT	---	1	1	AY.103	0.000006
S	262	A262S	Gct	Tct	1	1	AY.107	0.000466
S	262	A262del	GCT	---	1	1	AY.107	0.000466
S	262	A262del	GCT	---	1	1	AY.108	0.001103
S	262	A262V	gCt	gTt	1	1	AY.109	0.00074
S	262	A262D	gCt	gAt	1	1	AY.110	0.000113
S	262	A262T	GcT	AcA	1	1	AY.110	0.000113
S	262	A262S	Gct	Tct	1	1	AY.113	0.000142
S	262	A262P	GcT	CcC	1	1	AY.113	0.000142
S	262	A262S	Gct	Tct	1	1	AY.114	0.000231
S	262	A262T	Gct	Act	1	1	AY.114	0.000231
S	262	A262V	gCt	gTt	1	1	AY.117	0.000085
S	262	A262del	GCT	---	1	1	AY.117	0.000085
S	262	A262del	GCT	---	1	1	AY.118	0.000063
S	262	A262P	Gct	Cct	1	1	AY.119	0.000035
S	262	A262del	GCT	---	1	1	AY.120	0.000037
S	262	A262T	Gct	Act	1	1	AY.120	0.000037
S	262	A262T	Gct	Act	1	1	AY.120.1	0.000321
S	262	A262V	gCt	gTt	1	1	AY.121	0.000135
S	262	A262G	gCt	gGt	1	1	AY.16	0.00038
S	262	A262V	gCt	gTt	1	1	AY.20	0.000039
S	262	A262V	gCt	gTt	1	1	AY.23	0.00007
S	262	A262D	gCt	gAt	1	1	AY.25	0.000006
S	262	A262S	Gct	Tct	1	1	AY.27	0.000065
S	262	A262A	gcT	gcC	1	1	AY.29	0.000016
S	262	A262L	GCT	TTA	1	1	AY.3	0.00001
S	262	A262A	gcT	gcC	1	1	AY.3	0.00001
S	262	A262P	Gct	Cct	1	1	AY.33	0.000067
S	262	A262T	Gct	Act	1	1	AY.34	0.000097
S	262	A262A	gcT	gcG	1	1	AY.34	0.000097
S	262	A262del	GCT	---	1	1	AY.34.1	0.00051
S	262	A262V	gCT	gTG	1	1	AY.34.1	0.00051
S	262	A262S	Gct	Tct	1	1	AY.36	0.000148
S	262	A262del2	gCT	g--	1	1	AY.36	0.000148
S	262	A262P	Gct	Cct	1	1	AY.36	0.000148
S	262	A262S	Gct	Tct	1	1	AY.38	0.000499
S	262	A262V	gCt	gTt	1	1	AY.39.1	0.00004
S	262	A262D	gCt	gAt	1	1	AY.4	0.000002
S	262	A262G	gCt	gGt	1	1	AY.4	0.000002
S	262	A262del	GCT	---	1	1	AY.4.2	0.000022
S	262	A262V	gCt	gTt	1	1	AY.4.2.1	0.000149
S	262	A262S	Gct	Tct	1	1	AY.4.2.1	0.000149
S	262	A262del1	Gct	-ct	1	1	AY.4.5	0.000107
S	262	A262S	Gct	Tct	1	1	AY.4.5	0.000107
S	262	A262V	gCt	gTt	1	1	AY.40	0.000964
S	262	A262A	gcT	gcG	1	1	AY.42	0.00004
S	262	A262F	GCt	TTt	1	1	AY.42	0.00004
S	262	A262T	Gct	Act	1	1	AY.42	0.00004
S	262	A262L	GCT	TTA	1	1	AY.42	0.00004
S	262	A262del1	GCt	-Tt	1	1	AY.44	0.000006
S	262	A262del	GCT	---	1	1	AY.44	0.000006
S	262	A262P	Gct	Cct	1	1	AY.44	0.000006
S	262	A262D	gCt	gAt	1	1	AY.44	0.000006
S	262	A262P	Gct	Cct	1	1	AY.46	0.000104
S	262	A262P	Gct	Cct	1	1	AY.46.1	0.001027
S	262	A262T	Gct	Act	1	1	AY.46.3	0.000934
S	262	A262V	gCt	gTt	1	1	AY.46.5	0.000198
S	262	A262V	gCt	gTt	1	1	AY.46.6	0.000072
S	262	A262del	GCT	---	1	1	AY.47	0.000031
S	262	A262T	Gct	Act	1	1	AY.48	0.000465
S	262	A262P	Gct	Cct	1	1	AY.5	0.000021
S	262	A262S	Gct	Tct	1	1	AY.5.4	0.000277
S	262	A262D	gCT	gAC	1	1	AY.51	0.000909
S	262	A262S	Gct	Tct	1	1	AY.58	0.000907
S	262	A262del	GCT	---	1	1	AY.59	0.00053
S	262	A262G	gCt	gGt	1	1	AY.59	0.00053
S	262	A262V	gCt	gTt	1	1	AY.59	0.00053
S	262	A262V	gCt	gTt	1	1	AY.61	0.000105
S	262	A262del	GCT	---	1	1	AY.61	0.000105
S	262	A262A	gcT	gcC	1	1	AY.61	0.000105
S	262	A262D	gCT	gAC	1	1	AY.61	0.000105
S	262	A262del	GCT	---	1	1	AY.62	0.000436
S	262	A262S	Gct	Tct	1	1	AY.65	0.000533
S	262	A262V	gCt	gTt	1	1	AY.7	0.000196
S	262	A262S	Gct	Tct	1	1	AY.7.1	0.000113
S	262	A262S	Gct	Tct	1	1	AY.7.2	0.000559
S	262	A262V	gCT	gTC	1	1	AY.71	0.000475
S	262	A262del	GCT	---	1	1	AY.75.1	0.00018
S	262	A262A	gcT	gcA	1	1	AY.75.1	0.00018
S	262	A262P	Gct	Cct	1	1	AY.75.1	0.00018
S	262	A262A	gcT	gcC	1	1	AY.77	0.001127
S	262	A262S	Gct	Tct	1	1	AY.78	0.001541
S	262	A262del1	GcT	Cc-	1	1	AY.84	0.000437
S	262	A262S	Gct	Tct	1	1	AY.88	0.000884
S	262	A262S	Gct	Tct	1	1	AY.89	0.004902
S	262	A262del	GCT	---	1	1	AY.9	0.000068
S	262	A262del	GCT	---	1	1	AY.9.1	0.000084
S	262	A262K	GCT	AAG	1	1	AY.9.2	0.000037
S	262	A262A	gcT	gcC	1	1	AY.90	0.000684
S	262	A262V	gCt	gTt	1	1	AY.90	0.000684
S	262	A262S	Gct	Tct	1	1	AY.92	0.000287
S	262	A262del	GCT	---	1	1	AY.95	0.000761
S	262	A262A	gcT	gcA	1	1	AY.96	0.002075
S	262	A262A	gcT	gcC	1	1	AY.98	0.000079
S	262	A262del2	GCt	--t	1	1	AY.98.1	0.000048
S	262	A262V	gCt	gTt	1	1	AY.98.1	0.000048
S	262	A262V	gCt	gTt	1	1	B	0.000128
S	262	A262E	gCT	gAG	1	1	B.1.1	0.000018
S	262	A262del	GCT	---	1	1	B.1.1	0.000018
S	262	A262P	Gct	Cct	1	1	B.1.1	0.000018
S	262	A262del1	Gct	-ct	1	1	B.1.1	0.000018
S	262	A262S	Gct	Tct	1	1	B.1.1.112	0.058824
S	262	A262S	Gct	Tct	1	1	B.1.1.141	0.002012
S	262	A262T	Gct	Act	1	1	B.1.1.144	0.028571
S	262	A262del1	Gct	-ct	1	1	B.1.1.159	0.004673
S	262	A262del	GCT	---	1	1	B.1.1.192	0.002309
S	262	A262S	Gct	Tct	1	1	B.1.1.194	0.00495
S	262	A262P	Gct	Cct	1	1	B.1.1.214	0.000055
S	262	A262S	Gct	Tct	1	1	B.1.1.214	0.000055
S	262	A262S	Gct	Tct	1	1	B.1.1.216	0.00089
S	262	A262P	Gct	Cct	1	1	B.1.1.217	0.003636
S	262	A262A	gcT	gcC	1	1	B.1.1.220	0.001859
S	262	A262S	Gct	Tct	1	1	B.1.1.236	0.006897
S	262	A262S	Gct	Tct	1	1	B.1.1.265	0.003155
S	262	A262T	Gct	Act	1	1	B.1.1.27	0.00565
S	262	A262P	Gct	Cct	1	1	B.1.1.274	0.005051
S	262	A262S	Gct	Tct	1	1	B.1.1.279	0.001121
S	262	A262G	gCt	gGt	1	1	B.1.1.28	0.000311
S	262	A262D	gCt	gAt	1	1	B.1.1.28	0.000311
S	262	A262S	Gct	Tct	1	1	B.1.1.284	0.000107
S	262	A262V	gCt	gTt	1	1	B.1.1.284	0.000107
S	262	A262S	Gct	Tct	1	1	B.1.1.298	0.000862
S	262	A262del	GCT	---	1	1	B.1.1.306	0.000438
S	262	A262S	Gct	Tct	1	1	B.1.1.31	0.066667
S	262	A262S	Gct	Tct	1	1	B.1.1.317	0.000412
S	262	A262D	gCt	gAt	1	1	B.1.1.317	0.000412
S	262	A262V	gCt	gTt	1	1	B.1.1.318	0.000302
S	262	A262S	Gct	Tct	1	1	B.1.1.326	0.001761
S	262	A262G	gCt	gGt	1	1	B.1.1.326	0.001761
S	262	A262P	Gct	Cct	1	1	B.1.1.329	0.003846
S	262	A262S	Gct	Tct	1	1	B.1.1.33	0.000421
S	262	A262D	gCt	gAt	1	1	B.1.1.33	0.000421
S	262	A262G	gCt	gGt	1	1	B.1.1.332	0.03125
S	262	A262A	gcT	gcC	1	1	B.1.1.336	0.016667
S	262	A262D	gCt	gAt	1	1	B.1.1.369	0.000446
S	262	A262T	Gct	Act	1	1	B.1.1.375	0.011905
S	262	A262A	gcT	gcA	1	1	B.1.1.389	0.006061
S	262	A262D	gCt	gAt	1	1	B.1.1.398	0.003226
S	262	A262G	gCt	gGt	1	1	B.1.1.411	0.014706
S	262	A262S	Gct	Tct	1	1	B.1.1.416	0.000905
S	262	A262T	Gct	Act	1	1	B.1.1.416	0.000905
S	262	A262del	GCT	---	1	1	B.1.1.517	0.006803
S	262	A262G	gCt	gGt	1	1	B.1.1.519	0.00004
S	262	A262P	Gct	Cct	1	1	B.1.1.519	0.00004
S	262	A262S	Gct	Tct	1	1	B.1.1.523	0.001563
S	262	A262S	Gct	Tct	1	1	B.1.1.61	0.008772
S	262	A262S	Gct	Tct	1	1	B.1.110.3	0.000718
S	262	A262S	Gct	Tct	1	1	B.1.113	0.015625
S	262	A262A	gcT	gcC	1	1	B.1.119	0.010526
S	262	A262T	Gct	Act	1	1	B.1.131	0.008772
S	262	A262V	gCt	gTt	1	1	B.1.131	0.008772
S	262	A262T	Gct	Act	1	1	B.1.139	0.000733
S	262	A262A	gcT	gcC	1	1	B.1.160	0.000031
S	262	A262G	gCt	gGt	1	1	B.1.160	0.000031
S	262	A262V	gCT	gTA	1	1	B.1.160	0.000031
S	262	A262S	Gct	Tct	1	1	B.1.160.14	0.002119
S	262	A262G	gCt	gGt	1	1	B.1.160.16	0.000929
S	262	A262S	Gct	Tct	1	1	B.1.160.26	0.002421
S	262	A262S	Gct	Tct	1	1	B.1.160.28	0.002924
S	262	A262S	Gct	Tct	1	1	B.1.167	0.007812
S	262	A262A	gcT	gcC	1	1	B.1.167	0.007812
S	262	A262G	gCt	gGt	1	1	B.1.177	0.000013
S	262	A262R	GCt	CGt	1	1	B.1.177	0.000013
S	262	A262D	gCt	gAt	1	1	B.1.177	0.000013
S	262	A262S	Gct	Tct	1	1	B.1.177.12	0.000152
S	262	A262A	gcT	gcG	1	1	B.1.177.21	0.000076
S	262	A262S	Gct	Tct	1	1	B.1.177.21	0.000076
S	262	A262T	Gct	Act	1	1	B.1.177.28	0.007407
S	262	A262S	Gct	Tct	1	1	B.1.177.35	0.000691
S	262	A262S	Gct	Tct	1	1	B.1.177.4	0.000211
S	262	A262P	Gct	Cct	1	1	B.1.177.4	0.000211
S	262	A262S	Gct	Tct	1	1	B.1.177.40	0.005155
S	262	A262S	Gct	Tct	1	1	B.1.177.43	0.001477
S	262	A262D	gCt	gAt	1	1	B.1.177.44	0.000519
S	262	A262del	GCT	---	1	1	B.1.177.52	0.001757
S	262	A262del1	Gct	-ct	1	1	B.1.177.54	0.000606
S	262	A262S	Gct	Tct	1	1	B.1.177.60	0.000218
S	262	A262del	GCT	---	1	1	B.1.177.69	0.001484
S	262	A262S	Gct	Tct	1	1	B.1.177.72	0.00339
S	262	A262S	Gct	Tct	1	1	B.1.177.75	0.001041
S	262	A262V	gCt	gTt	1	1	B.1.177.86	0.000183
S	262	A262G	gCt	gGt	1	1	B.1.2	0.000009
S	262	A262P	Gct	Cct	1	1	B.1.206	0.000816
S	262	A262S	Gct	Tct	1	1	B.1.214	0.003663
S	262	A262del	GCT	---	1	1	B.1.221	0.000071
S	262	A262T	Gct	Act	1	1	B.1.232	0.000537
S	262	A262T	Gct	Act	1	1	B.1.236	0.002053
S	262	A262D	gCt	gAt	1	1	B.1.240	0.000216
S	262	A262D	gCt	gAt	1	1	B.1.258	0.000067
S	262	A262A	gcT	gcG	1	1	B.1.258	0.000067
S	262	A262G	gCt	gGt	1	1	B.1.258.17	0.000104
S	262	A262A	gcT	gcG	1	1	B.1.258.3	0.001675
S	262	A262A	gcT	gcC	1	1	B.1.260	0.003344
S	262	A262G	gCt	gGt	1	1	B.1.279	0.000514
S	262	A262T	Gct	Act	1	1	B.1.279	0.000514
S	262	A262A	gcT	gcC	1	1	B.1.279	0.000514
S	262	A262T	Gct	Act	1	1	B.1.311	0.000275
S	262	A262del	GCT	---	1	1	B.1.311	0.000275
S	262	A262S	Gct	Tct	1	1	B.1.311	0.000275
S	262	A262A	gcT	gcC	1	1	B.1.320	0.001245
S	262	A262S	Gct	Tct	1	1	B.1.349	0.000715
S	262	A262G	gCt	gGt	1	1	B.1.349	0.000715
S	262	A262G	gCt	gGt	1	1	B.1.351.2	0.000303
S	262	A262V	gCt	gTt	1	1	B.1.36	0.000146
S	262	A262A	gcT	gcC	1	1	B.1.36	0.000146
S	262	A262del	GCT	---	1	1	B.1.36	0.000146
S	262	A262S	Gct	Tct	1	1	B.1.36.16	0.001425
S	262	A262del1	Gct	-ct	1	1	B.1.36.17	0.000494
S	262	A262T	Gct	Act	1	1	B.1.36.18	0.00042
S	262	A262del	GCT	---	1	1	B.1.36.18	0.00042
S	262	A262V	gCt	gTt	1	1	B.1.36.18	0.00042
S	262	A262V	gCt	gTt	1	1	B.1.36.19	0.009259
S	262	A262E	gCT	gAA	1	1	B.1.36.29	0.000517
S	262	A262G	gCt	gGt	1	1	B.1.36.31	0.001751
S	262	A262G	gCt	gGt	1	1	B.1.36.35	0.002604
S	262	A262S	Gct	Tct	1	1	B.1.36.36	0.000602
S	262	A262V	gCt	gTt	1	1	B.1.362	0.001541
S	262	A262V	gCt	gTt	1	1	B.1.381	0.007812
S	262	A262S	Gct	Tct	1	1	B.1.398	0.002976
S	262	A262del	GCT	---	1	1	B.1.416.1	0.001563
S	262	A262T	Gct	Act	1	1	B.1.424	0.008065
S	262	A262T	Gct	Act	1	1	B.1.427	0.00005
S	262	A262D	gCt	gAt	1	1	B.1.427	0.00005
S	262	A262V	gCt	gTt	1	1	B.1.427	0.00005
S	262	A262A	gcT	gcA	1	1	B.1.429	0.000024
S	262	A262V	gCt	gTt	1	1	B.1.429	0.000024
S	262	A262del	GCT	---	1	1	B.1.429	0.000024
S	262	A262T	Gct	Act	1	1	B.1.438.1	0.000107
S	262	A262S	Gct	Tct	1	1	B.1.459	0.004082
S	262	A262T	Gct	Act	1	1	B.1.466.2	0.000391
S	262	A262S	Gct	Tct	1	1	B.1.468	0.005714
S	262	A262S	Gct	Tct	1	1	B.1.473	0.019231
S	262	A262V	gCt	gTt	1	1	B.1.501	0.007353
S	262	A262V	gCt	gTt	1	1	B.1.524	0.001406
S	262	A262del2	gCT	g--	1	1	B.1.525	0.000113
S	262	A262V	gCt	gTt	1	1	B.1.526	0.000024
S	262	A262S	Gct	Tct	1	1	B.1.527	0.003704
S	262	A262G	gCt	gGt	1	1	B.1.538	0.008065
S	262	A262S	Gct	Tct	1	1	B.1.540	0.009709
S	262	A262del	GCT	---	1	1	B.1.561	0.000397
S	262	A262T	Gct	Act	1	1	B.1.580	0.004065
S	262	A262V	gCt	gTt	1	1	B.1.595	0.000261
S	262	A262V	gCt	gTt	1	1	B.1.596	0.000087
S	262	A262S	GcT	TcG	1	1	B.1.609	0.000479
S	262	A262V	gCt	gTt	1	1	B.1.611	0.04
S	262	A262G	gCT	gGA	1	1	B.1.617.3	0.002985
S	262	A262V	gCt	gTt	1	1	B.1.619	0.000871
S	262	A262A	gcT	gcG	1	1	B.1.621	0.000089
S	262	A262del2	GCT	--N	1	1	B.1.621	0.000089
S	262	A262V	gCt	gTt	1	1	B.1.621	0.000089
S	262	A262del	GCT	---	1	1	B.1.621.1	0.000506
S	262	A262del	GCT	---	1	1	B.1.627	0.00202
S	262	A262S	Gct	Tct	1	1	B.1.636	0.006711
S	262	A262V	gCt	gTt	1	1	B.4.6	0.016667
S	262	A262S	Gct	Tct	1	1	B.41	0.008
S	262	A262del	GCT	---	1	1	B.55	0.00295
S	262	A262S	Gct	Tct	1	1	C.10	0.25
S	262	A262T	Gct	Act	1	1	C.16	0.00106
S	262	A262del	GCT	---	1	1	C.16	0.00106
S	262	A262A	gcT	gcC	1	1	C.23	0.005814
S	262	A262D	gCt	gAt	1	1	C.37	0.000116
S	262	A262T	Gct	Act	1	1	C.37	0.000116
S	262	A262V	gCt	gTt	1	1	C.37.1	0.002618
S	262	A262S	Gct	Tct	1	1	C.37.1	0.002618
S	262	A262S	Gct	Tct	1	1	C.39	0.018868
S	262	A262G	gCt	gGt	1	1	D.2	0.000075
S	262	A262V	gCt	gTt	1	1	D.2	0.000075
S	262	A262del1	gcT	gc-	1	1	D.2	0.000075
S	262	A262T	Gct	Act	1	1	D.3	0.005917
S	262	A262S	Gct	Tct	1	1	M.3	0.076923
S	262	A262S	Gct	Tct	1	1	N.3	0.005814
S	262	A262S	Gct	Tct	1	1	N.4	0.004255
S	262	A262del	GCT	---	1	1	P.1.1	0.000318
S	262	A262S	Gct	Tct	1	1	P.1.1	0.000318
S	262	A262T	Gct	Act	1	1	P.1.1	0.000318
S	262	A262S	Gct	Tct	1	1	P.1.10	0.000269
S	262	A262A	gcT	gcA	1	1	P.1.14	0.000048
S	262	A262V	gCt	gTt	1	1	P.1.14	0.000048
S	262	A262del1	Gct	-ct	1	1	P.1.15	0.000232
S	262	A262D	gCt	gAt	1	1	P.1.15	0.000232
S	262	A262S	Gct	Tct	1	1	P.1.16	0.000374
S	262	A262A	gcT	gcC	1	1	P.1.2	0.001156
S	262	A262S	Gct	Tct	1	1	P.1.7	0.000319
S	262	A262A	gcT	gcA	1	1	P.2	0.000187
S	262	A262T	Gct	Act	1	1	Q.1	0.000126
S	262	A262del	GCT	---	1	1	Q.4	0.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.