CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 26 & Codon = cTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S26P26LnonsyncCtcTt395739510.99848421638-21640

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S26P26LcCtcTt39513957All0.000756
S26P26LcCtcTt636637AY.1030.003949
S26P26LcCtcTt444444B.1.1.70.000397
S26P26LcCtcTt319319AY.40.000496
S26P26LcCtcTt276276B.1.1.3720.190083
S26P26LcCtcTt215215B.1.258.170.022354
S26P26LcCtcTt158158B.1.3510.004697
S26P26LcCtcTt156157B.1.617.20.000587
S26P26LcCtcTt136136B.1.5440.819277
S26P26LcCtcTt101101B.1.20.000889
S26P26LcCtcTt8484B.1.10.001524
S26P26LcCtcTt8282AY.430.000363
S26P26LcCtcTt7575B.1.4290.001765
S26P26LcCtcTt6767B.1.2650.085133
S26P26LcCtcTt6363AY.330.004207
S26P26LcCtcTt6262AY.230.004324
S26P26LcCtcTt6060AY.30.000597
S26P26LcCtcTt5959AY.440.000359
S26P26LcCtcTt5959B.10.00054
S26P26LcCtcTt5252B.1.1770.000685
S26P26LcCtcTt4141B.1.6370.002996
S26P26LcCtcTt3939AY.50.000805
S26P26LcCtcTt3838AY.250.000229
S26P26LcCtcTt3838B.1.2410.030844
S26P26LcCtcTt2828B.1.5770.019244
S26P26LcCtcTt2626AY.1190.000918
S26P26LcCtcTt2626AY.46.40.004277
S26P26LcCtcTt2525AY.200.000972
S26P26LcCtcTt2424P.20.004479
S26P26LcCtcTt2222P.10.000347
S26P26LcCtcTt1919AY.140.001672
S26P26LcCtcTt1919AY.7.20.010626
S26P26LcCtcTt1818AY.1210.002436
S26P26LcCtcTt1717B.1.1600.00053
S26P26LcCtcTt1515Q.30.002175
S26P26LcCtcTt1414AY.390.000346
S26P26LcCtcTt1313B.1.2210.000923
S26P26LcCtcTt1313B.1.2580.000865
S26P26LcCtcTt1212AY.1060.004019
S26P26LcCtcTt1212AY.1180.000752
S26P26LcCtcTt1212AY.1200.000446
S26P26LcCtcTt1212AY.260.00034
S26P26LcCtcTt1010B.1.177.750.010406
S26P26LcCtcTt1010B.1.2430.000696
S26P26LcCtcTt1010B.1.5260.000235
S26P26LcCtcTt99AY.1000.000414
S26P26LcCtcTt99AY.1020.000239
S26P26LcCtcTt88AY.1170.000676
S26P26LcCtcTt88B.1.1.5190.000318
S26P26LcCtcTt88B.1.5960.000697
S26P26LcCtcTt77AY.610.000733
S26P26LcCtcTt77B.400.00255
S26P26LcCtcTt260.111111
S26P26LcCtcTt66AY.470.000187
S26P26LcCtcTt66B.1.4270.000303
S26P26LcCtcTt66B.1.5240.008439
S26P26LcCtcTt66C.370.000696
S26P26LcCtcTt55AY.240.002155
S26P26LcCtcTt55AY.34.10.00255
S26P26LcCtcTt55AY.980.000395
S26P26LcCtcTt55B.1.3990.009671
S26P26LcCtcTt55B.1.466.20.001956
S26P26LcCtcTt44A.210.01108
S26P26LcCtcTt44AY.290.000063
S26P26LcCtcTt44AY.39.10.000158
S26P26LcCtcTt44AY.4.20.000087
S26P26LcCtcTt44AY.710.0019
S26P26LcCtcTt44B.1.1590.04878
S26P26LcCtcTt44B.1.177.40.000844
S26P26LcCtcTt44B.1.177.800.007648
S26P26LcCtcTt44B.1.5250.000453
S26P26LcCtcTt44B.1.6210.000354
S26P26LcCtcTt44Q.10.000505
S26P26LcCtcTt44R.10.00036
S26P26LcCtcTt33A.2.50.001497
S26P26LcCtcTt33AY.270.000194
S26P26LcCtcTt33AY.350.000699
S26P26LcCtcTt33AY.450.000365
S26P26LcCtcTt33AY.460.000312
S26P26LcCtcTt33AY.520.002443
S26P26LcCtcTt33AY.680.000821
S26P26LcCtcTt33B.1.1.3060.001315
S26P26LcCtcTt33B.1.177.810.000568
S26P26LcCtcTt33B.1.360.000438
S26P26LcCtcTt33B.1.3690.000856
S26P26LcCtcTt33N.60.021277
S26P26LcCtcTt22AY.1100.000225
S26P26LcCtcTt22AY.220.004184
S26P26LcCtcTt22AY.360.000296
S26P26LcCtcTt22AY.4.40.000818
S26P26LcCtcTt22AY.4.50.000215
S26P26LcCtcTt22AY.400.001929
S26P26LcCtcTt22AY.5.30.000675
S26P26LcCtcTt22AY.5.40.000553
S26P26LcCtcTt22AY.540.000191
S26P26LcCtcTt22AY.550.001835
S26P26LcCtcTt22AY.7.10.000225
S26P26LcCtcTt22AY.700.000417
S26P26LcCtcTt22AY.75.10.000361
S26P26LcCtcTt22AY.9.10.000167
S26P26LcCtcTt22AY.930.000546
S26P26LcCtcTt22AY.99.20.000184
S26P26LcCtcTt22B.1.1.2140.000111
S26P26LcCtcTt22B.1.1.250.001137
S26P26LcCtcTt22B.1.1.390.001019
S26P26LcCtcTt22B.1.2400.000431
S26P26LcCtcTt22B.1.3480.036364
S26P26LcCtcTt22B.1.36.290.001035
S26P26LcCtcTt22B.1.4000.000858
S26P26LcCtcTt22B.1.4710.005464
S26P26LcCtcTt22B.1.5650.001621
S26P26LcCtcTt22B.1.5750.000607
S26P26LcCtcTt22C.10.004785
S26P26LcCtcTt22C.140.008658
S26P26LcCtcTt22Q.80.00033
S26P26LcCtcTt11A.20.000662
S26P26LcCtcTt11A.23.10.000704
S26P26LcCtcTt11AA.10.007246
S26P26LcCtcTt11AY.1160.000287
S26P26LcCtcTt11AY.120.000316
S26P26LcCtcTt11AY.120.2.10.000498
S26P26LcCtcTt11AY.130.000161
S26P26LcCtcTt11AY.160.00038
S26P26LcCtcTt11AY.23.10.000417
S26P26LcCtcTt11AY.300.000396
S26P26LcCtcTt11AY.4.2.10.000149
S26P26LcCtcTt11AY.410.000294
S26P26LcCtcTt11AY.420.00004
S26P26LcCtcTt11AY.46.50.000198
S26P26LcCtcTt11AY.46.60.000072
S26P26LcCtcTt11AY.570.000656
S26P26LcCtcTt11AY.60.000041
S26P26LcCtcTt11AY.630.000387
S26P26LcCtcTt11AY.670.000464
S26P26LcCtcTt11AY.690.000187
S26P26LcCtcTt11AY.750.000056
S26P26LcCtcTt11AY.790.001211
S26P26LcCtcTt11AY.800.001129
S26P26LcCtcTt11AY.840.000437
S26P26LcCtcTt11AY.90.000068
S26P26LcCtcTt11AY.9.20.000037
S26P26LcCtcTt11AY.920.000287
S26P26LcCtcTt11AY.940.000443
S26P26LcCtcTt11AY.98.10.000048
S26P26LcCtcTt11AY.990.001049
S26P26LcCtcTt11B.1.1.1760.000439
S26P26LcCtcTt11B.1.1.2220.000204
S26P26LcCtcTt11B.1.1.2410.00207
S26P26LcCtcTt11B.1.1.280.000311
S26P26LcCtcTt11B.1.1.2840.000107
S26P26LcCtcTt11B.1.1.3020.002075
S26P26LcCtcTt11B.1.1.3120.001912
S26P26LcCtcTt11B.1.1.3180.000302
S26P26LcCtcTt11B.1.1.3250.025641
S26P26LcCtcTt11B.1.1.3280.016949
S26P26LcCtcTt11B.1.1.330.000421
S26P26LcCtcTt11B.1.1.3480.000796
S26P26LcCtcTt11B.1.1.3770.001381
S26P26LcCtcTt11B.1.1.4310.016129
S26P26LcCtcTt11B.1.1.4320.001266
S26P26LcCtcTt11B.1.1.500.000679
S26P26LcCtcTt11B.1.1.5230.001563
S26P26LcCtcTt11B.1.1.590.006494
S26P26LcCtcTt11B.1.1180.006711
S26P26LcCtcTt11B.1.1460.004237
S26P26LcCtcTt11B.1.160.160.000929
S26P26LcCtcTt11B.1.177.150.000631
S26P26LcCtcTt11B.1.177.210.000076
S26P26LcCtcTt11B.1.177.510.004566
S26P26LcCtcTt11B.1.2100.002132
S26P26LcCtcTt11B.1.214.20.0006
S26P26LcCtcTt11B.1.2340.000132
S26P26LcCtcTt11B.1.2360.002053
S26P26LcCtcTt11B.1.2390.001221
S26P26LcCtcTt11B.1.36.170.000494
S26P26LcCtcTt11B.1.36.270.000763
S26P26LcCtcTt11B.1.4040.001302
S26P26LcCtcTt11B.1.4160.001269
S26P26LcCtcTt11B.1.4260.001009
S26P26LcCtcTt11B.1.4330.003195
S26P26LcCtcTt11B.1.438.10.000107
S26P26LcCtcTt11B.1.4680.005714
S26P26LcCtcTt11B.1.5170.000427
S26P26LcCtcTt11B.1.5210.004975
S26P26LcCtcTt11B.1.5640.000426
S26P26LcCtcTt11B.1.5900.004545
S26P26LcCtcTt11B.1.5910.010638
S26P26LcCtcTt11B.1.6050.005952
S26P26LcCtcTt11B.1.617.10.000129
S26P26LcCtcTt11B.1.6190.000871
S26P26LcCtcTt11B.1.6230.000536
S26P26LcCtcTt11B.1.6300.005236
S26P26LcCtcTt11B.1.6310.003367
S26P26LcCtcTt11B.1.9.50.005682
S26P26LcCtcTt11B.1.930.000934
S26P26LcCtcTt11C.36.30.000567
S26P26LcCtcTt11C.380.008065
S26P26LcCtcTt11D.20.000075
S26P26LcCtcTt11L.30.003546
S26P26LcCtcTt11P.1.70.000319

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.