CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 26 & Codon = Tct

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S26P26SnonsynCctTct1248871248840.99997621638-21640

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S26P26SCctTct124884124887All0.023886
S26P26SCctTct6193761940P.10.975755
S26P26SCctTct2083820838P.1.140.99608
S26P26SCctTct60806080P.1.170.9835
S26P26SCctTct41974197P.1.150.975139
S26P26SCctTct40964096B.1.4290.096374
S26P26SCctTct36603660P.1.100.986257
S26P26SCctTct30553055P.1.70.975415
S26P26SCctTct29572957P.1.10.939327
S26P26SCctTct25422542P.1.160.950991
S26P26SCctTct18021802P.1.120.872217
S26P26SCctTct12731273B.1.1.70.00114
S26P26SCctTct11411141P.1.17.10.99825
S26P26SCctTct10801080P.1.130.97035
S26P26SCctTct10291029AY.40.001602
S26P26SCctTct10231023P.1.40.999023
S26P26SCctTct10211021B.1.6200.965941
S26P26SCctTct994994AY.4.30.8367
S26P26SCctTct858858P.1.20.991908
S26P26SCctTct512512P.1.60.996109
S26P26SCctTct423423B.1.36.360.254666
S26P26SCctTct370370B.1.177.570.103962
S26P26SCctTct332332B.1.20.002923
S26P26SCctTct268268B.1.617.20.001009
S26P26SCctTct212212B.10.001942
S26P26SCctTct208208P.1.80.995215
S26P26SCctTct204204P.1.90.980769
S26P26SCctTct140140AY.1030.000869
S26P26SCctTct134134B.1.1600.004179
S26P26SCctTct116116B.1.1.4200.1167
S26P26SCctTct106106P.1.10.10.861789
S26P26SCctTct9999B.1.10.001796
S26P26SCctTct9999B.1.4270.004999
S26P26SCctTct9898P.1.111
S26P26SCctTct9494AY.440.000572
S26P26SCctTct9494B.1.5260.002209
S26P26SCctTct9191AY.9.10.007619
S26P26SCctTct8989B.1.3690.025385
S26P26SCctTct7979AY.1000.003635
S26P26SCctTct6666B.1.1770.000869
S26P26SCctTct6161AY.430.00027
S26P26SCctTct5050AY.250.000301
S26P26SCctTct4949AY.30.000487
S26P26SCctTct4747B.1.1.5190.001866
S26P26SCctTct4545AY.1200.001673
S26P26SCctTct3434AY.140.002992
S26P26SCctTct3434AY.46.30.031746
S26P26SCctTct3030AY.29.10.006615
S26P26SCctTct2929P.1.31
S26P26SCctTct2828AY.1180.001754
S26P26SCctTct2828B.1.36.290.014485
S26P26SCctTct2626B.1.3510.000773
S26P26SCctTct2525B.1.1.700.008527
S26P26SCctTct2525B.1.5510.032258
S26P26SCctTct2525B.1.6370.001827
S26P26SCctTct2525C.370.002902
S26P26SCctTct2424P.1.10.21
S26P26SCctTct2323B.1.1.5280.110577
S26P26SCctTct2323B.1.2210.001634
S26P26SCctTct2323B.1.2340.003035
S26P26SCctTct2020AY.390.000494
S26P26SCctTct1717AY.450.002069
S26P26SCctTct1717AY.950.012938
S26P26SCctTct1717B.1.160.80.021907
S26P26SCctTct1717B.1.2580.001131
S26P26SCctTct1717B.1.5960.001481
S26P26SCctTct1515AY.260.000425
S26P26SCctTct1515B.1.1.280.004669
S26P26SCctTct1515B.1.2430.001044
S26P26SCctTct1515B.1.351.20.004539
S26P26SCctTct1313AY.1190.000459
S26P26SCctTct1313B.1.6210.001151
S26P26SCctTct1313P.1.51
S26P26SCctTct1212AY.290.000189
S26P26SCctTct1212B.1.177.440.006227
S26P26SCctTct1111A.2.50.005489
S26P26SCctTct1111AY.46.60.000794
S26P26SCctTct1111AY.50.000227
S26P26SCctTct1010AY.1020.000265
S26P26SCctTct1010AY.690.001867
S26P26SCctTct1010P.20.001866
S26P26SCctTct99AY.4.20.000195
S26P26SCctTct99B.1.2400.00194
S26P26SCctTct88AY.1100.000902
S26P26SCctTct88AY.1170.000676
S26P26SCctTct88AY.9.20.000294
S26P26SCctTct88AY.99.20.000737
S26P26SCctTct88B.1.1.2140.000444
S26P26SCctTct88B.1.438.10.000858
S26P26SCctTct88B.1.5250.000905
S26P26SCctTct77AY.230.000488
S26P26SCctTct77AY.4.50.000752
S26P26SCctTct77AY.460.000729
S26P26SCctTct77AY.90.000473
S26P26SCctTct77AY.980.000553
S26P26SCctTct77B.1.5890.05303
S26P26SCctTct66AY.1210.000812
S26P26SCctTct66AY.590.003178
S26P26SCctTct66B.1.1.4160.00543
S26P26SCctTct66B.1.177.210.000459
S26P26SCctTct66B.1.177.600.001311
S26P26SCctTct66B.1.3460.007864
S26P26SCctTct66B.1.360.000875
S26P26SCctTct55AY.1070.00233
S26P26SCctTct55AY.200.000194
S26P26SCctTct55AY.330.000334
S26P26SCctTct55AY.340.000485
S26P26SCctTct55AY.46.40.000823
S26P26SCctTct55AY.540.000477
S26P26SCctTct55AY.60.000206
S26P26SCctTct55AY.75.10.000902
S26P26SCctTct55B.1.1.480.014368
S26P26SCctTct55B.1.1390.003666
S26P26SCctTct55B.1.3490.003574
S26P26SCctTct55B.1.6090.002397
S26P26SCctTct55R.10.00045
S26P26SCctTct44AY.1140.000924
S26P26SCctTct44AY.470.000124
S26P26SCctTct44AY.530.00115
S26P26SCctTct44AY.750.000224
S26P26SCctTct44AY.98.10.000194
S26P26SCctTct44B.1.1.1610.014134
S26P26SCctTct44B.1.1.2220.000816
S26P26SCctTct44B.1.1.3170.001647
S26P26SCctTct44B.1.160.160.003717
S26P26SCctTct44B.1.220.00527
S26P26SCctTct44B.1.36.90.012862
S26P26SCctTct44B.1.5770.002749
S26P26SCctTct44B.1.6230.002146
S26P26SCctTct44B.1.6360.026846
S26P26SCctTct33A.23.10.002113
S26P26SCctTct33AT.10.015385
S26P26SCctTct33AY.350.000699
S26P26SCctTct33AY.420.000121
S26P26SCctTct33AY.610.000314
S26P26SCctTct33AY.650.001599
S26P26SCctTct33AY.920.000862
S26P26SCctTct33B0.000383
S26P26SCctTct33B.1.1.2580.009772
S26P26SCctTct33B.1.1.2940.003797
S26P26SCctTct33B.1.1.2970.006711
S26P26SCctTct33B.1.1.3160.002775
S26P26SCctTct33B.1.1.330.001263
S26P26SCctTct33B.1.1.3480.002389
S26P26SCctTct33B.1.1.3490.030928
S26P26SCctTct33B.1.1.4080.083333
S26P26SCctTct33B.1.1.4640.004418
S26P26SCctTct33B.1.177.730.001699
S26P26SCctTct33B.1.2390.003663
S26P26SCctTct33B.1.258.170.000312
S26P26SCctTct33B.1.3960.002117
S26P26SCctTct33B.1.429.10.036145
S26P26SCctTct33B.1.4650.011407
S26P26SCctTct33B.1.466.20.001174
S26P26SCctTct33B.1.5760.00272
S26P26SCctTct33B.1.930.002801
S26P26SCctTct33B.400.001093
S26P26SCctTct33C.1.20.012766
S26P26SCctTct33D.20.000225
S26P26SCctTct33Q.80.000495
S26P26SCctTct22AY.380.000999
S26P26SCctTct22AY.46.20.001271
S26P26SCctTct22AY.46.50.000397
S26P26SCctTct22AY.580.001815
S26P26SCctTct22AY.620.000871
S26P26SCctTct22AY.710.00095
S26P26SCctTct22AY.840.000875
S26P26SCctTct22AY.890.009804
S26P26SCctTct22B.1.1.1710.007353
S26P26SCctTct22B.1.1.2200.003717
S26P26SCctTct22B.1.1.2610.017241
S26P26SCctTct22B.1.1.3180.000604
S26P26SCctTct22B.1.1.3320.0625
S26P26SCctTct22B.1.1.3540.008772
S26P26SCctTct22B.1.1.5260.007092
S26P26SCctTct22B.1.177.320.002699
S26P26SCctTct22B.1.177.870.001456
S26P26SCctTct22B.1.5950.000522
S26P26SCctTct22B.1.6120.005305
S26P26SCctTct22B.1.6180.008065
S26P26SCctTct22B.1.6280.000705
S26P26SCctTct22C.350.001548
S26P26SCctTct22C.360.001821
S26P26SCctTct22C.37.10.005236
S26P26SCctTct22Q.10.000253
S26P26SCctTct11A.20.000662
S26P26SCctTct11A.270.001656
S26P26SCctTct11A.280.002646
S26P26SCctTct11AD.20.000219
S26P26SCctTct11AE.80.000489
S26P26SCctTct11AH.30.003802
S26P26SCctTct11AY.1130.000142
S26P26SCctTct11AY.1160.000287
S26P26SCctTct11AY.16.10.00047
S26P26SCctTct11AY.240.000431
S26P26SCctTct11AY.270.000065
S26P26SCctTct11AY.3.10.000085
S26P26SCctTct11AY.360.000148
S26P26SCctTct11AY.39.10.00004
S26P26SCctTct11AY.39.20.001541
S26P26SCctTct11AY.4.40.000409
S26P26SCctTct11AY.5.30.000337
S26P26SCctTct11AY.5.40.000277
S26P26SCctTct11AY.670.000464
S26P26SCctTct11AY.680.000274
S26P26SCctTct11AY.7.10.000113
S26P26SCctTct11AY.740.000116
S26P26SCctTct11AY.930.000273
S26P26SCctTct11B.1.1.10.000327
S26P26SCctTct11B.1.1.1170.009709
S26P26SCctTct11B.1.1.1470.090909
S26P26SCctTct11B.1.1.1570.000913
S26P26SCctTct11B.1.1.1890.001513
S26P26SCctTct11B.1.1.2000.007463
S26P26SCctTct11B.1.1.2070.001182
S26P26SCctTct11B.1.1.2360.006897
S26P26SCctTct11B.1.1.250.000569
S26P26SCctTct11B.1.1.2650.003155
S26P26SCctTct11B.1.1.3120.001912
S26P26SCctTct11B.1.1.3590.027778
S26P26SCctTct11B.1.1.370.000193
S26P26SCctTct11B.1.1.390.00051
S26P26SCctTct11B.1.1.3970.002252
S26P26SCctTct11B.1.1.4110.014706
S26P26SCctTct11B.1.1.4300.041667
S26P26SCctTct11B.1.1.4320.001266
S26P26SCctTct11B.1.1.710.006061
S26P26SCctTct11B.1.1.80.003584
S26P26SCctTct11B.1.1110.001175
S26P26SCctTct11B.1.1200.007692
S26P26SCctTct11B.1.1260.001276
S26P26SCctTct11B.1.160.300.002976
S26P26SCctTct11B.1.160.90.007194
S26P26SCctTct11B.1.177.190.001431
S26P26SCctTct11B.1.177.300.002513
S26P26SCctTct11B.1.177.330.001645
S26P26SCctTct11B.1.177.350.000691
S26P26SCctTct11B.1.177.480.003125
S26P26SCctTct11B.1.177.50.001242
S26P26SCctTct11B.1.177.540.000606
S26P26SCctTct11B.1.177.560.000668
S26P26SCctTct11B.1.177.590.016129
S26P26SCctTct11B.1.177.630.002703
S26P26SCctTct11B.1.177.70.000165
S26P26SCctTct11B.1.177.750.001041
S26P26SCctTct11B.1.177.830.001481
S26P26SCctTct11B.1.177.860.000183
S26P26SCctTct11B.1.1790.003759
S26P26SCctTct11B.1.2140.003663
S26P26SCctTct11B.1.258.140.00098
S26P26SCctTct11B.1.3110.000275
S26P26SCctTct11B.1.3240.001605
S26P26SCctTct11B.1.36.10.00114
S26P26SCctTct11B.1.36.170.000494
S26P26SCctTct11B.1.36.180.00042
S26P26SCctTct11B.1.3620.001541
S26P26SCctTct11B.1.3820.008929
S26P26SCctTct11B.1.3990.001934
S26P26SCctTct11B.1.4000.000429
S26P26SCctTct11B.1.4150.014286
S26P26SCctTct11B.1.4160.001269
S26P26SCctTct11B.1.4700.001404
S26P26SCctTct11B.1.5170.000427
S26P26SCctTct11B.1.5330.009615
S26P26SCctTct11B.1.5380.008065
S26P26SCctTct11B.1.5410.004425
S26P26SCctTct11B.1.5610.000397
S26P26SCctTct11B.1.5640.000426
S26P26SCctTct11B.1.564.10.001577
S26P26SCctTct11B.1.5680.001111
S26P26SCctTct11B.1.5730.006098
S26P26SCctTct11B.1.5740.002151
S26P26SCctTct11B.1.5750.000303
S26P26SCctTct11B.1.5900.004545
S26P26SCctTct11B.1.6320.006711
S26P26SCctTct11B.30.000831
S26P26SCctTct11B.390.002331
S26P26SCctTct11B.60.00091
S26P26SCctTct11B.6.60.000889
S26P26SCctTct11C.10.002392
S26P26SCctTct11C.160.00106
S26P26SCctTct11C.36.10.004149
S26P26SCctTct11C.36.20.034483
S26P26SCctTct11C.36.30.000567
S26P26SCctTct11P.70.004367
S26P26SCctTct11Q.30.000145
S26P26SCctTct11Q.40.000455
S26P26SCctTct11U.20.008772

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.