CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 26 | P26S | nonsyn | Cct | Tct | 124887 | 124884 | 0.999976 | 21638-21640 | |
S | 26 | P26S | nonsyn | CcT | TcC | 124887 | 3 | 0.0000240217 | 21638-21640 | |
S | 26 | P26L | nonsyn | cCt | cTt | 3957 | 3951 | 0.998484 | 21638-21640 | |
S | 26 | P26L | nonsyn | cCT | cTG | 3957 | 4 | 0.00101087 | 21638-21640 | |
S | 26 | P26L | nonsyn | CCT | TTG | 3957 | 2 | 0.000505433 | 21638-21640 | |
S | 26 | P26H | nonsyn | cCt | cAt | 531 | 531 | 1 | 21638-21640 | |
S | 26 | P26P | syn | ccT | ccC | 372 | 310 | 0.833333 | 21638-21640 | |
S | 26 | P26P | syn | ccT | ccA | 372 | 34 | 0.0913979 | 21638-21640 | |
S | 26 | P26P | syn | ccT | ccG | 372 | 28 | 0.0752688 | 21638-21640 | |
S | 26 | P26R | nonsyn | cCt | cGt | 175 | 175 | 1 | 21638-21640 | |
S | 26 | P26F | nonsyn | CCt | TTt | 163 | 163 | 1 | 21638-21640 | |
S | 26 | P26del | del | CCT | --- | 117 | 117 | 1 | 21638-21640 | |
S | 26 | P26T | nonsyn | Cct | Act | 74 | 74 | 1 | 21638-21640 | |
S | 26 | P26Y | nonsyn | CCt | TAt | 9 | 9 | 1 | 21638-21640 | |
S | 26 | P26A | nonsyn | Cct | Gct | 8 | 7 | 0.875 | 21638-21640 | |
S | 26 | P26A | nonsyn | CcT | GcG | 8 | 1 | 0.125 | 21638-21640 | |
S | 26 | P26del1 | del | ccT | cc- | 7 | 7 | 1 | 21638-21640 | |
S | 26 | P26Q | nonsyn | cCT | cAG | 2 | 2 | 1 | 21638-21640 | |
S | 26 | P26X | nonsyn | CCT | TAG | 2 | 2 | 1 | 21638-21640 | |
S | 26 | P26del2 | del | cCT | c-- | 2 | 2 | 1 | 21638-21640 | |
S | 26 | P26C | nonsyn | CCt | TGt | 1 | 1 | 1 | 21638-21640 | |
S | 26 | P26G | nonsyn | CCT | GGA | 1 | 1 | 1 | 21638-21640 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 26 | P26S | Cct | Tct | 124884 | 124887 | All | 0.023886 |
S | 26 | P26S | CcT | TcC | 3 | 124887 | All | 0.000001 |
S | 26 | P26S | Cct | Tct | 61937 | 61940 | P.1 | 0.975755 |
S | 26 | P26S | CcT | TcC | 3 | 61940 | P.1 | 0.000047 |
S | 26 | P26S | Cct | Tct | 20838 | 20838 | P.1.14 | 0.99608 |
S | 26 | P26S | Cct | Tct | 6080 | 6080 | P.1.17 | 0.9835 |
S | 26 | P26S | Cct | Tct | 4197 | 4197 | P.1.15 | 0.975139 |
S | 26 | P26S | Cct | Tct | 4096 | 4096 | B.1.429 | 0.096374 |
S | 26 | P26L | cCt | cTt | 3951 | 3957 | All | 0.000756 |
S | 26 | P26L | cCT | cTG | 4 | 3957 | All | 0.000001 |
S | 26 | P26L | CCT | TTG | 2 | 3957 | All | 0 |
S | 26 | P26S | Cct | Tct | 3660 | 3660 | P.1.10 | 0.986257 |
S | 26 | P26S | Cct | Tct | 3055 | 3055 | P.1.7 | 0.975415 |
S | 26 | P26S | Cct | Tct | 2957 | 2957 | P.1.1 | 0.939327 |
S | 26 | P26S | Cct | Tct | 2542 | 2542 | P.1.16 | 0.950991 |
S | 26 | P26S | Cct | Tct | 1802 | 1802 | P.1.12 | 0.872217 |
S | 26 | P26S | Cct | Tct | 1273 | 1273 | B.1.1.7 | 0.00114 |
S | 26 | P26S | Cct | Tct | 1141 | 1141 | P.1.17.1 | 0.99825 |
S | 26 | P26S | Cct | Tct | 1080 | 1080 | P.1.13 | 0.97035 |
S | 26 | P26S | Cct | Tct | 1029 | 1029 | AY.4 | 0.001602 |
S | 26 | P26S | Cct | Tct | 1023 | 1023 | P.1.4 | 0.999023 |
S | 26 | P26S | Cct | Tct | 1021 | 1021 | B.1.620 | 0.965941 |
S | 26 | P26S | Cct | Tct | 994 | 994 | AY.4.3 | 0.8367 |
S | 26 | P26S | Cct | Tct | 858 | 858 | P.1.2 | 0.991908 |
S | 26 | P26L | cCt | cTt | 636 | 637 | AY.103 | 0.003949 |
S | 26 | P26L | cCT | cTG | 1 | 637 | AY.103 | 0.000006 |
S | 26 | P26H | cCt | cAt | 531 | 531 | All | 0.000102 |
S | 26 | P26S | Cct | Tct | 512 | 512 | P.1.6 | 0.996109 |
S | 26 | P26L | cCt | cTt | 444 | 444 | B.1.1.7 | 0.000397 |
S | 26 | P26S | Cct | Tct | 423 | 423 | B.1.36.36 | 0.254666 |
S | 26 | P26P | ccT | ccC | 310 | 372 | All | 0.000059 |
S | 26 | P26P | ccT | ccA | 34 | 372 | All | 0.000007 |
S | 26 | P26P | ccT | ccG | 28 | 372 | All | 0.000005 |
S | 26 | P26S | Cct | Tct | 370 | 370 | B.1.177.57 | 0.103962 |
S | 26 | P26S | Cct | Tct | 332 | 332 | B.1.2 | 0.002923 |
S | 26 | P26L | cCt | cTt | 319 | 319 | AY.4 | 0.000496 |
S | 26 | P26L | cCt | cTt | 276 | 276 | B.1.1.372 | 0.190083 |
S | 26 | P26S | Cct | Tct | 268 | 268 | B.1.617.2 | 0.001009 |
S | 26 | P26L | cCt | cTt | 215 | 215 | B.1.258.17 | 0.022354 |
S | 26 | P26S | Cct | Tct | 212 | 212 | B.1 | 0.001942 |
S | 26 | P26S | Cct | Tct | 208 | 208 | P.1.8 | 0.995215 |
S | 26 | P26S | Cct | Tct | 204 | 204 | P.1.9 | 0.980769 |
S | 26 | P26R | cCt | cGt | 175 | 175 | All | 0.000033 |
S | 26 | P26F | CCt | TTt | 163 | 163 | All | 0.000031 |
S | 26 | P26H | cCt | cAt | 159 | 159 | B.1.1.7 | 0.000142 |
S | 26 | P26L | cCt | cTt | 158 | 158 | B.1.351 | 0.004697 |
S | 26 | P26L | cCt | cTt | 156 | 157 | B.1.617.2 | 0.000587 |
S | 26 | P26L | cCT | cTG | 1 | 157 | B.1.617.2 | 0.000004 |
S | 26 | P26S | Cct | Tct | 140 | 140 | AY.103 | 0.000869 |
S | 26 | P26L | cCt | cTt | 136 | 136 | B.1.544 | 0.819277 |
S | 26 | P26S | Cct | Tct | 134 | 134 | B.1.160 | 0.004179 |
S | 26 | P26del | CCT | --- | 117 | 117 | All | 0.000022 |
S | 26 | P26S | Cct | Tct | 116 | 116 | B.1.1.420 | 0.1167 |
S | 26 | P26H | cCt | cAt | 114 | 114 | B.1.2 | 0.001004 |
S | 26 | P26R | cCt | cGt | 110 | 110 | B.1.1.7 | 0.000098 |
S | 26 | P26S | Cct | Tct | 106 | 106 | P.1.10.1 | 0.861789 |
S | 26 | P26F | CCt | TTt | 103 | 103 | P.1 | 0.001623 |
S | 26 | P26L | cCt | cTt | 101 | 101 | B.1.2 | 0.000889 |
S | 26 | P26S | Cct | Tct | 99 | 99 | B.1.1 | 0.001796 |
S | 26 | P26S | Cct | Tct | 99 | 99 | B.1.427 | 0.004999 |
S | 26 | P26S | Cct | Tct | 98 | 98 | P.1.11 | 1 |
S | 26 | P26S | Cct | Tct | 94 | 94 | AY.44 | 0.000572 |
S | 26 | P26S | Cct | Tct | 94 | 94 | B.1.526 | 0.002209 |
S | 26 | P26S | Cct | Tct | 91 | 91 | AY.9.1 | 0.007619 |
S | 26 | P26S | Cct | Tct | 89 | 89 | B.1.369 | 0.025385 |
S | 26 | P26L | cCt | cTt | 84 | 84 | B.1.1 | 0.001524 |
S | 26 | P26L | cCt | cTt | 82 | 82 | AY.43 | 0.000363 |
S | 26 | P26S | Cct | Tct | 79 | 79 | AY.100 | 0.003635 |
S | 26 | P26L | cCt | cTt | 75 | 75 | B.1.429 | 0.001765 |
S | 26 | P26T | Cct | Act | 74 | 74 | All | 0.000014 |
S | 26 | P26L | cCt | cTt | 67 | 67 | B.1.265 | 0.085133 |
S | 26 | P26S | Cct | Tct | 66 | 66 | B.1.177 | 0.000869 |
S | 26 | P26L | cCt | cTt | 63 | 63 | AY.33 | 0.004207 |
S | 26 | P26L | cCt | cTt | 62 | 62 | AY.23 | 0.004324 |
S | 26 | P26S | Cct | Tct | 61 | 61 | AY.43 | 0.00027 |
S | 26 | P26L | cCt | cTt | 60 | 60 | AY.3 | 0.000597 |
S | 26 | P26L | cCt | cTt | 59 | 59 | AY.44 | 0.000359 |
S | 26 | P26L | cCt | cTt | 59 | 59 | B.1 | 0.00054 |
S | 26 | P26P | ccT | ccC | 52 | 52 | AZ.2 | 0.042693 |
S | 26 | P26L | cCt | cTt | 52 | 52 | B.1.177 | 0.000685 |
S | 26 | P26S | Cct | Tct | 50 | 50 | AY.25 | 0.000301 |
S | 26 | P26S | Cct | Tct | 49 | 49 | AY.3 | 0.000487 |
S | 26 | P26S | Cct | Tct | 47 | 47 | B.1.1.519 | 0.001866 |
S | 26 | P26H | cCt | cAt | 47 | 47 | B.1.596 | 0.004096 |
S | 26 | P26S | Cct | Tct | 45 | 45 | AY.120 | 0.001673 |
S | 26 | P26P | ccT | ccC | 31 | 45 | B.1.1.7 | 0.000028 |
S | 26 | P26P | ccT | ccA | 13 | 45 | B.1.1.7 | 0.000012 |
S | 26 | P26P | ccT | ccG | 1 | 45 | B.1.1.7 | 0.000001 |
S | 26 | P26F | CCt | TTt | 43 | 43 | P.1.7 | 0.013729 |
S | 26 | P26L | cCt | cTt | 41 | 41 | B.1.637 | 0.002996 |
S | 26 | P26H | cCt | cAt | 40 | 40 | B.1.177.42 | 0.035778 |
S | 26 | P26L | cCt | cTt | 39 | 39 | AY.5 | 0.000805 |
S | 26 | P26L | cCt | cTt | 38 | 38 | AY.25 | 0.000229 |
S | 26 | P26L | cCt | cTt | 38 | 38 | B.1.241 | 0.030844 |
S | 26 | P26P | ccT | ccC | 37 | 37 | AY.4 | 0.000058 |
S | 26 | P26S | Cct | Tct | 34 | 34 | AY.14 | 0.002992 |
S | 26 | P26S | Cct | Tct | 34 | 34 | AY.46.3 | 0.031746 |
S | 26 | P26P | ccT | ccC | 33 | 33 | AY.4.2.1 | 0.004917 |
S | 26 | P26S | Cct | Tct | 30 | 30 | AY.29.1 | 0.006615 |
S | 26 | P26H | cCt | cAt | 29 | 29 | B.1.1.50 | 0.019688 |
S | 26 | P26S | Cct | Tct | 29 | 29 | P.1.3 | 1 |
S | 26 | P26S | Cct | Tct | 28 | 28 | AY.118 | 0.001754 |
S | 26 | P26P | ccT | ccC | 27 | 28 | B.1.2 | 0.000238 |
S | 26 | P26P | ccT | ccG | 1 | 28 | B.1.2 | 0.000009 |
S | 26 | P26S | Cct | Tct | 28 | 28 | B.1.36.29 | 0.014485 |
S | 26 | P26L | cCt | cTt | 28 | 28 | B.1.577 | 0.019244 |
S | 26 | P26L | cCt | cTt | 26 | 26 | AY.119 | 0.000918 |
S | 26 | P26L | cCt | cTt | 26 | 26 | AY.46.4 | 0.004277 |
S | 26 | P26S | Cct | Tct | 26 | 26 | B.1.351 | 0.000773 |
S | 26 | P26L | cCt | cTt | 25 | 25 | AY.20 | 0.000972 |
S | 26 | P26P | ccT | ccC | 25 | 25 | AY.5 | 0.000516 |
S | 26 | P26S | Cct | Tct | 25 | 25 | B.1.1.70 | 0.008527 |
S | 26 | P26S | Cct | Tct | 25 | 25 | B.1.551 | 0.032258 |
S | 26 | P26S | Cct | Tct | 25 | 25 | B.1.637 | 0.001827 |
S | 26 | P26S | Cct | Tct | 25 | 25 | C.37 | 0.002902 |
S | 26 | P26S | Cct | Tct | 24 | 24 | P.1.10.2 | 1 |
S | 26 | P26L | cCt | cTt | 24 | 24 | P.2 | 0.004479 |
S | 26 | P26S | Cct | Tct | 23 | 23 | B.1.1.528 | 0.110577 |
S | 26 | P26del | CCT | --- | 23 | 23 | B.1.1.7 | 0.000021 |
S | 26 | P26S | Cct | Tct | 23 | 23 | B.1.221 | 0.001634 |
S | 26 | P26S | Cct | Tct | 23 | 23 | B.1.234 | 0.003035 |
S | 26 | P26L | cCt | cTt | 22 | 22 | P.1 | 0.000347 |
S | 26 | P26H | cCt | cAt | 21 | 21 | AY.26 | 0.000595 |
S | 26 | P26S | Cct | Tct | 20 | 20 | AY.39 | 0.000494 |
S | 26 | P26P | ccT | ccC | 16 | 20 | B.1.1 | 0.00029 |
S | 26 | P26P | ccT | ccG | 3 | 20 | B.1.1 | 0.000054 |
S | 26 | P26P | ccT | ccA | 1 | 20 | B.1.1 | 0.000018 |
S | 26 | P26L | cCt | cTt | 19 | 19 | AY.14 | 0.001672 |
S | 26 | P26L | cCt | cTt | 19 | 19 | AY.7.2 | 0.010626 |
S | 26 | P26H | cCt | cAt | 18 | 18 | AY.111 | 0.003297 |
S | 26 | P26L | cCt | cTt | 18 | 18 | AY.121 | 0.002436 |
S | 26 | P26S | Cct | Tct | 17 | 17 | AY.45 | 0.002069 |
S | 26 | P26S | Cct | Tct | 17 | 17 | AY.95 | 0.012938 |
S | 26 | P26L | cCt | cTt | 17 | 17 | B.1.160 | 0.00053 |
S | 26 | P26S | Cct | Tct | 17 | 17 | B.1.160.8 | 0.021907 |
S | 26 | P26S | Cct | Tct | 17 | 17 | B.1.258 | 0.001131 |
S | 26 | P26S | Cct | Tct | 17 | 17 | B.1.596 | 0.001481 |
S | 26 | P26S | Cct | Tct | 15 | 15 | AY.26 | 0.000425 |
S | 26 | P26S | Cct | Tct | 15 | 15 | B.1.1.28 | 0.004669 |
S | 26 | P26S | Cct | Tct | 15 | 15 | B.1.243 | 0.001044 |
S | 26 | P26S | Cct | Tct | 15 | 15 | B.1.351.2 | 0.004539 |
S | 26 | P26H | cCt | cAt | 15 | 15 | B.1.617.2 | 0.000056 |
S | 26 | P26L | cCt | cTt | 15 | 15 | Q.3 | 0.002175 |
S | 26 | P26R | cCt | cGt | 14 | 14 | AY.25 | 0.000084 |
S | 26 | P26L | cCt | cTt | 14 | 14 | AY.39 | 0.000346 |
S | 26 | P26S | Cct | Tct | 13 | 13 | AY.119 | 0.000459 |
S | 26 | P26L | cCt | cTt | 13 | 13 | B.1.221 | 0.000923 |
S | 26 | P26L | cCt | cTt | 13 | 13 | B.1.258 | 0.000865 |
S | 26 | P26S | Cct | Tct | 13 | 13 | B.1.621 | 0.001151 |
S | 26 | P26S | Cct | Tct | 13 | 13 | P.1.5 | 1 |
S | 26 | P26L | cCt | cTt | 12 | 12 | AY.106 | 0.004019 |
S | 26 | P26L | cCt | cTt | 12 | 12 | AY.118 | 0.000752 |
S | 26 | P26L | cCt | cTt | 12 | 12 | AY.120 | 0.000446 |
S | 26 | P26L | cCt | cTt | 12 | 12 | AY.26 | 0.00034 |
S | 26 | P26S | Cct | Tct | 12 | 12 | AY.29 | 0.000189 |
S | 26 | P26T | Cct | Act | 12 | 12 | B.1 | 0.00011 |
S | 26 | P26P | ccT | ccA | 7 | 12 | B.1 | 0.000064 |
S | 26 | P26P | ccT | ccC | 4 | 12 | B.1 | 0.000037 |
S | 26 | P26P | ccT | ccG | 1 | 12 | B.1 | 0.000009 |
S | 26 | P26S | Cct | Tct | 12 | 12 | B.1.177.44 | 0.006227 |
S | 26 | P26P | ccT | ccG | 12 | 12 | B.1.630 | 0.062827 |
S | 26 | P26S | Cct | Tct | 11 | 11 | A.2.5 | 0.005489 |
S | 26 | P26S | Cct | Tct | 11 | 11 | AY.46.6 | 0.000794 |
S | 26 | P26S | Cct | Tct | 11 | 11 | AY.5 | 0.000227 |
S | 26 | P26H | cCt | cAt | 11 | 11 | B.1 | 0.000101 |
S | 26 | P26R | cCt | cGt | 11 | 11 | B.1.351 | 0.000327 |
S | 26 | P26S | Cct | Tct | 10 | 10 | AY.102 | 0.000265 |
S | 26 | P26del | CCT | --- | 10 | 10 | AY.33 | 0.000668 |
S | 26 | P26S | Cct | Tct | 10 | 10 | AY.69 | 0.001867 |
S | 26 | P26L | cCt | cTt | 10 | 10 | B.1.177.75 | 0.010406 |
S | 26 | P26L | cCt | cTt | 10 | 10 | B.1.243 | 0.000696 |
S | 26 | P26L | cCt | cTt | 10 | 10 | B.1.526 | 0.000235 |
S | 26 | P26S | Cct | Tct | 10 | 10 | P.2 | 0.001866 |
S | 26 | P26Y | CCt | TAt | 9 | 9 | All | 0.000002 |
S | 26 | P26L | cCt | cTt | 9 | 9 | AY.100 | 0.000414 |
S | 26 | P26L | cCt | cTt | 9 | 9 | AY.102 | 0.000239 |
S | 26 | P26R | cCt | cGt | 9 | 9 | AY.114 | 0.00208 |
S | 26 | P26del | CCT | --- | 9 | 9 | AY.4 | 0.000014 |
S | 26 | P26S | Cct | Tct | 9 | 9 | AY.4.2 | 0.000195 |
S | 26 | P26T | Cct | Act | 9 | 9 | AY.98.1 | 0.000436 |
S | 26 | P26P | ccT | ccC | 9 | 9 | B.1.1.318 | 0.002716 |
S | 26 | P26R | cCt | cGt | 9 | 9 | B.1.229 | 0.087379 |
S | 26 | P26S | Cct | Tct | 9 | 9 | B.1.240 | 0.00194 |
S | 26 | P26A | Cct | Gct | 7 | 8 | All | 0.000001 |
S | 26 | P26A | CcT | GcG | 1 | 8 | All | 0 |
S | 26 | P26S | Cct | Tct | 8 | 8 | AY.110 | 0.000902 |
S | 26 | P26L | cCt | cTt | 8 | 8 | AY.117 | 0.000676 |
S | 26 | P26S | Cct | Tct | 8 | 8 | AY.117 | 0.000676 |
S | 26 | P26H | cCt | cAt | 8 | 8 | AY.4 | 0.000012 |
S | 26 | P26T | Cct | Act | 8 | 8 | AY.4 | 0.000012 |
S | 26 | P26S | Cct | Tct | 8 | 8 | AY.9.2 | 0.000294 |
S | 26 | P26S | Cct | Tct | 8 | 8 | AY.99.2 | 0.000737 |
S | 26 | P26S | Cct | Tct | 8 | 8 | B.1.1.214 | 0.000444 |
S | 26 | P26L | cCt | cTt | 8 | 8 | B.1.1.519 | 0.000318 |
S | 26 | P26P | ccT | ccC | 7 | 8 | B.1.1.519 | 0.000278 |
S | 26 | P26P | ccT | ccA | 1 | 8 | B.1.1.519 | 0.00004 |
S | 26 | P26P | ccT | ccC | 7 | 8 | B.1.177 | 0.000092 |
S | 26 | P26P | ccT | ccA | 1 | 8 | B.1.177 | 0.000013 |
S | 26 | P26S | Cct | Tct | 8 | 8 | B.1.438.1 | 0.000858 |
S | 26 | P26S | Cct | Tct | 8 | 8 | B.1.525 | 0.000905 |
S | 26 | P26L | cCt | cTt | 8 | 8 | B.1.596 | 0.000697 |
S | 26 | P26del1 | ccT | cc- | 7 | 7 | All | 0.000001 |
S | 26 | P26del | CCT | --- | 7 | 7 | AY.103 | 0.000043 |
S | 26 | P26S | Cct | Tct | 7 | 7 | AY.23 | 0.000488 |
S | 26 | P26H | cCt | cAt | 7 | 7 | AY.23 | 0.000488 |
S | 26 | P26S | Cct | Tct | 7 | 7 | AY.4.5 | 0.000752 |
S | 26 | P26S | Cct | Tct | 7 | 7 | AY.46 | 0.000729 |
S | 26 | P26L | cCt | cTt | 7 | 7 | AY.61 | 0.000733 |
S | 26 | P26S | Cct | Tct | 7 | 7 | AY.9 | 0.000473 |
S | 26 | P26S | Cct | Tct | 7 | 7 | AY.98 | 0.000553 |
S | 26 | P26del | CCT | --- | 7 | 7 | B.1.177 | 0.000092 |
S | 26 | P26Y | CCt | TAt | 7 | 7 | B.1.2 | 0.000062 |
S | 26 | P26S | Cct | Tct | 7 | 7 | B.1.589 | 0.05303 |
S | 26 | P26F | CCt | TTt | 7 | 7 | B.1.620 | 0.006623 |
S | 26 | P26L | cCt | cTt | 7 | 7 | B.40 | 0.00255 |
S | 26 | P26L | CCT | TTG | 2 | 6 | 0.111111 | |
S | 26 | P26L | cCt | cTt | 2 | 6 | 0.111111 | |
S | 26 | P26L | cCT | cTG | 2 | 6 | 0.111111 | |
S | 26 | P26H | cCt | cAt | 6 | 6 | AY.102 | 0.000159 |
S | 26 | P26S | Cct | Tct | 6 | 6 | AY.121 | 0.000812 |
S | 26 | P26T | Cct | Act | 6 | 6 | AY.3 | 0.00006 |
S | 26 | P26R | cCt | cGt | 6 | 6 | AY.43 | 0.000027 |
S | 26 | P26P | ccT | ccC | 5 | 6 | AY.44 | 0.00003 |
S | 26 | P26P | ccT | ccA | 1 | 6 | AY.44 | 0.000006 |
S | 26 | P26L | cCt | cTt | 6 | 6 | AY.47 | 0.000187 |
S | 26 | P26S | Cct | Tct | 6 | 6 | AY.59 | 0.003178 |
S | 26 | P26del | CCT | --- | 6 | 6 | B.1.1 | 0.000109 |
S | 26 | P26S | Cct | Tct | 6 | 6 | B.1.1.416 | 0.00543 |
S | 26 | P26S | Cct | Tct | 6 | 6 | B.1.177.21 | 0.000459 |
S | 26 | P26S | Cct | Tct | 6 | 6 | B.1.177.60 | 0.001311 |
S | 26 | P26S | Cct | Tct | 6 | 6 | B.1.346 | 0.007864 |
S | 26 | P26S | Cct | Tct | 6 | 6 | B.1.36 | 0.000875 |
S | 26 | P26L | cCt | cTt | 6 | 6 | B.1.427 | 0.000303 |
S | 26 | P26L | cCt | cTt | 6 | 6 | B.1.524 | 0.008439 |
S | 26 | P26P | ccT | ccC | 5 | 6 | B.1.617.2 | 0.000019 |
S | 26 | P26P | ccT | ccA | 1 | 6 | B.1.617.2 | 0.000004 |
S | 26 | P26L | cCt | cTt | 6 | 6 | C.37 | 0.000696 |
S | 26 | P26S | Cct | Tct | 5 | 5 | AY.107 | 0.00233 |
S | 26 | P26S | Cct | Tct | 5 | 5 | AY.20 | 0.000194 |
S | 26 | P26L | cCt | cTt | 5 | 5 | AY.24 | 0.002155 |
S | 26 | P26S | Cct | Tct | 5 | 5 | AY.33 | 0.000334 |
S | 26 | P26S | Cct | Tct | 5 | 5 | AY.34 | 0.000485 |
S | 26 | P26L | cCt | cTt | 5 | 5 | AY.34.1 | 0.00255 |
S | 26 | P26S | Cct | Tct | 5 | 5 | AY.46.4 | 0.000823 |
S | 26 | P26H | cCt | cAt | 5 | 5 | AY.5 | 0.000103 |
S | 26 | P26S | Cct | Tct | 5 | 5 | AY.54 | 0.000477 |
S | 26 | P26S | Cct | Tct | 5 | 5 | AY.6 | 0.000206 |
S | 26 | P26S | Cct | Tct | 5 | 5 | AY.75.1 | 0.000902 |
S | 26 | P26L | cCt | cTt | 5 | 5 | AY.98 | 0.000395 |
S | 26 | P26S | Cct | Tct | 5 | 5 | B.1.1.48 | 0.014368 |
S | 26 | P26T | Cct | Act | 5 | 5 | B.1.1.7 | 0.000004 |
S | 26 | P26S | Cct | Tct | 5 | 5 | B.1.139 | 0.003666 |
S | 26 | P26S | Cct | Tct | 5 | 5 | B.1.349 | 0.003574 |
S | 26 | P26L | cCt | cTt | 5 | 5 | B.1.399 | 0.009671 |
S | 26 | P26L | cCt | cTt | 5 | 5 | B.1.466.2 | 0.001956 |
S | 26 | P26S | Cct | Tct | 5 | 5 | B.1.609 | 0.002397 |
S | 26 | P26S | Cct | Tct | 5 | 5 | R.1 | 0.00045 |
S | 26 | P26L | cCt | cTt | 4 | 4 | A.21 | 0.01108 |
S | 26 | P26S | Cct | Tct | 4 | 4 | AY.114 | 0.000924 |
S | 26 | P26del | CCT | --- | 4 | 4 | AY.120 | 0.000149 |
S | 26 | P26T | Cct | Act | 4 | 4 | AY.14 | 0.000352 |
S | 26 | P26P | ccT | ccC | 4 | 4 | AY.25 | 0.000024 |
S | 26 | P26P | ccT | ccC | 4 | 4 | AY.26 | 0.000113 |
S | 26 | P26L | cCt | cTt | 4 | 4 | AY.29 | 0.000063 |
S | 26 | P26L | cCt | cTt | 4 | 4 | AY.39.1 | 0.000158 |
S | 26 | P26L | cCt | cTt | 4 | 4 | AY.4.2 | 0.000087 |
S | 26 | P26T | Cct | Act | 4 | 4 | AY.45 | 0.000487 |
S | 26 | P26S | Cct | Tct | 4 | 4 | AY.47 | 0.000124 |
S | 26 | P26S | Cct | Tct | 4 | 4 | AY.53 | 0.00115 |
S | 26 | P26L | cCt | cTt | 4 | 4 | AY.71 | 0.0019 |
S | 26 | P26S | Cct | Tct | 4 | 4 | AY.75 | 0.000224 |
S | 26 | P26S | Cct | Tct | 4 | 4 | AY.98.1 | 0.000194 |
S | 26 | P26S | Cct | Tct | 4 | 4 | B.1.1.161 | 0.014134 |
S | 26 | P26S | Cct | Tct | 4 | 4 | B.1.1.222 | 0.000816 |
S | 26 | P26S | Cct | Tct | 4 | 4 | B.1.1.317 | 0.001647 |
S | 26 | P26L | cCt | cTt | 4 | 4 | B.1.159 | 0.04878 |
S | 26 | P26S | Cct | Tct | 4 | 4 | B.1.160.16 | 0.003717 |
S | 26 | P26L | cCt | cTt | 4 | 4 | B.1.177.4 | 0.000844 |
S | 26 | P26P | ccT | ccC | 4 | 4 | B.1.177.60 | 0.000874 |
S | 26 | P26L | cCt | cTt | 4 | 4 | B.1.177.80 | 0.007648 |
S | 26 | P26S | Cct | Tct | 4 | 4 | B.1.22 | 0.00527 |
S | 26 | P26S | Cct | Tct | 4 | 4 | B.1.36.9 | 0.012862 |
S | 26 | P26L | cCt | cTt | 4 | 4 | B.1.525 | 0.000453 |
S | 26 | P26S | Cct | Tct | 4 | 4 | B.1.577 | 0.002749 |
S | 26 | P26del | CCT | --- | 4 | 4 | B.1.617.2 | 0.000015 |
S | 26 | P26P | ccT | ccC | 4 | 4 | B.1.621 | 0.000354 |
S | 26 | P26L | cCt | cTt | 4 | 4 | B.1.621 | 0.000354 |
S | 26 | P26S | Cct | Tct | 4 | 4 | B.1.623 | 0.002146 |
S | 26 | P26S | Cct | Tct | 4 | 4 | B.1.636 | 0.026846 |
S | 26 | P26P | ccT | ccG | 3 | 4 | P.2 | 0.00056 |
S | 26 | P26P | ccT | ccC | 1 | 4 | P.2 | 0.000187 |
S | 26 | P26L | cCt | cTt | 4 | 4 | Q.1 | 0.000505 |
S | 26 | P26L | cCt | cTt | 4 | 4 | R.1 | 0.00036 |
S | 26 | P26L | cCt | cTt | 3 | 3 | A.2.5 | 0.001497 |
S | 26 | P26S | Cct | Tct | 3 | 3 | A.23.1 | 0.002113 |
S | 26 | P26S | Cct | Tct | 3 | 3 | AT.1 | 0.015385 |
S | 26 | P26H | cCt | cAt | 3 | 3 | AY.100 | 0.000138 |
S | 26 | P26P | ccT | ccG | 2 | 3 | AY.103 | 0.000012 |
S | 26 | P26P | ccT | ccC | 1 | 3 | AY.103 | 0.000006 |
S | 26 | P26L | cCt | cTt | 3 | 3 | AY.27 | 0.000194 |
S | 26 | P26L | cCt | cTt | 3 | 3 | AY.35 | 0.000699 |
S | 26 | P26S | Cct | Tct | 3 | 3 | AY.35 | 0.000699 |
S | 26 | P26S | Cct | Tct | 3 | 3 | AY.42 | 0.000121 |
S | 26 | P26P | ccT | ccC | 2 | 3 | AY.43 | 0.000009 |
S | 26 | P26P | ccT | ccG | 1 | 3 | AY.43 | 0.000004 |
S | 26 | P26L | cCt | cTt | 3 | 3 | AY.45 | 0.000365 |
S | 26 | P26L | cCt | cTt | 3 | 3 | AY.46 | 0.000312 |
S | 26 | P26L | cCt | cTt | 3 | 3 | AY.52 | 0.002443 |
S | 26 | P26S | Cct | Tct | 3 | 3 | AY.61 | 0.000314 |
S | 26 | P26R | cCt | cGt | 3 | 3 | AY.64 | 0.001786 |
S | 26 | P26S | Cct | Tct | 3 | 3 | AY.65 | 0.001599 |
S | 26 | P26L | cCt | cTt | 3 | 3 | AY.68 | 0.000821 |
S | 26 | P26S | Cct | Tct | 3 | 3 | AY.92 | 0.000862 |
S | 26 | P26S | Cct | Tct | 3 | 3 | B | 0.000383 |
S | 26 | P26del | CCT | --- | 3 | 3 | B.1 | 0.000027 |
S | 26 | P26S | Cct | Tct | 3 | 3 | B.1.1.258 | 0.009772 |
S | 26 | P26S | Cct | Tct | 3 | 3 | B.1.1.294 | 0.003797 |
S | 26 | P26S | Cct | Tct | 3 | 3 | B.1.1.297 | 0.006711 |
S | 26 | P26L | cCt | cTt | 3 | 3 | B.1.1.306 | 0.001315 |
S | 26 | P26S | Cct | Tct | 3 | 3 | B.1.1.316 | 0.002775 |
S | 26 | P26S | Cct | Tct | 3 | 3 | B.1.1.33 | 0.001263 |
S | 26 | P26S | Cct | Tct | 3 | 3 | B.1.1.348 | 0.002389 |
S | 26 | P26S | Cct | Tct | 3 | 3 | B.1.1.349 | 0.030928 |
S | 26 | P26S | Cct | Tct | 3 | 3 | B.1.1.408 | 0.083333 |
S | 26 | P26S | Cct | Tct | 3 | 3 | B.1.1.464 | 0.004418 |
S | 26 | P26S | Cct | Tct | 3 | 3 | B.1.177.73 | 0.001699 |
S | 26 | P26L | cCt | cTt | 3 | 3 | B.1.177.81 | 0.000568 |
S | 26 | P26S | Cct | Tct | 3 | 3 | B.1.239 | 0.003663 |
S | 26 | P26T | Cct | Act | 3 | 3 | B.1.242 | 0.056604 |
S | 26 | P26S | Cct | Tct | 3 | 3 | B.1.258.17 | 0.000312 |
S | 26 | P26L | cCt | cTt | 3 | 3 | B.1.36 | 0.000438 |
S | 26 | P26L | cCt | cTt | 3 | 3 | B.1.369 | 0.000856 |
S | 26 | P26S | Cct | Tct | 3 | 3 | B.1.396 | 0.002117 |
S | 26 | P26F | CCt | TTt | 3 | 3 | B.1.429 | 0.000071 |
S | 26 | P26S | Cct | Tct | 3 | 3 | B.1.429.1 | 0.036145 |
S | 26 | P26S | Cct | Tct | 3 | 3 | B.1.465 | 0.011407 |
S | 26 | P26S | Cct | Tct | 3 | 3 | B.1.466.2 | 0.001174 |
S | 26 | P26P | ccT | ccC | 3 | 3 | B.1.526 | 0.000071 |
S | 26 | P26S | Cct | Tct | 3 | 3 | B.1.576 | 0.00272 |
S | 26 | P26H | cCt | cAt | 3 | 3 | B.1.609 | 0.001438 |
S | 26 | P26S | Cct | Tct | 3 | 3 | B.1.93 | 0.002801 |
S | 26 | P26S | Cct | Tct | 3 | 3 | B.40 | 0.001093 |
S | 26 | P26S | Cct | Tct | 3 | 3 | C.1.2 | 0.012766 |
S | 26 | P26S | Cct | Tct | 3 | 3 | D.2 | 0.000225 |
S | 26 | P26L | cCt | cTt | 3 | 3 | N.6 | 0.021277 |
S | 26 | P26del | CCT | --- | 3 | 3 | P.1 | 0.000047 |
S | 26 | P26S | Cct | Tct | 3 | 3 | Q.8 | 0.000495 |
S | 26 | P26X | CCT | TAG | 2 | 2 | 0.111111 | |
S | 26 | P26Y | CCt | TAt | 2 | 2 | 0.111111 | |
S | 26 | P26H | cCt | cAt | 2 | 2 | 0.111111 | |
S | 26 | P26Q | cCT | cAG | 2 | 2 | 0.111111 | |
S | 26 | P26F | CCt | TTt | 2 | 2 | 0.111111 | |
S | 26 | P26del2 | cCT | c-- | 2 | 2 | All | 0 |
S | 26 | P26X | CCT | TAG | 2 | 2 | All | 0 |
S | 26 | P26Q | cCT | cAG | 2 | 2 | All | 0 |
S | 26 | P26P | ccT | ccC | 2 | 2 | AY.100 | 0.000092 |
S | 26 | P26H | cCt | cAt | 2 | 2 | AY.103 | 0.000012 |
S | 26 | P26L | cCt | cTt | 2 | 2 | AY.110 | 0.000225 |
S | 26 | P26P | ccT | ccC | 2 | 2 | AY.118 | 0.000125 |
S | 26 | P26L | cCt | cTt | 2 | 2 | AY.22 | 0.004184 |
S | 26 | P26P | ccT | ccC | 2 | 2 | AY.23 | 0.000139 |
S | 26 | P26del | CCT | --- | 2 | 2 | AY.25 | 0.000012 |
S | 26 | P26P | ccT | ccC | 2 | 2 | AY.3 | 0.00002 |
S | 26 | P26P | ccT | ccC | 2 | 2 | AY.3.1 | 0.000171 |
S | 26 | P26L | cCt | cTt | 2 | 2 | AY.36 | 0.000296 |
S | 26 | P26S | Cct | Tct | 2 | 2 | AY.38 | 0.000999 |
S | 26 | P26R | cCt | cGt | 2 | 2 | AY.4 | 0.000003 |
S | 26 | P26T | Cct | Act | 2 | 2 | AY.4.2 | 0.000043 |
S | 26 | P26L | cCt | cTt | 2 | 2 | AY.4.4 | 0.000818 |
S | 26 | P26L | cCt | cTt | 2 | 2 | AY.4.5 | 0.000215 |
S | 26 | P26L | cCt | cTt | 2 | 2 | AY.40 | 0.001929 |
S | 26 | P26H | cCt | cAt | 2 | 2 | AY.43 | 0.000009 |
S | 26 | P26del | CCT | --- | 2 | 2 | AY.43 | 0.000009 |
S | 26 | P26T | Cct | Act | 2 | 2 | AY.44 | 0.000012 |
S | 26 | P26H | cCt | cAt | 2 | 2 | AY.46 | 0.000208 |
S | 26 | P26S | Cct | Tct | 2 | 2 | AY.46.2 | 0.001271 |
S | 26 | P26P | ccT | ccC | 2 | 2 | AY.46.4 | 0.000329 |
S | 26 | P26S | Cct | Tct | 2 | 2 | AY.46.5 | 0.000397 |
S | 26 | P26H | cCt | cAt | 2 | 2 | AY.47 | 0.000062 |
S | 26 | P26L | cCt | cTt | 2 | 2 | AY.5.3 | 0.000675 |
S | 26 | P26L | cCt | cTt | 2 | 2 | AY.5.4 | 0.000553 |
S | 26 | P26L | cCt | cTt | 2 | 2 | AY.54 | 0.000191 |
S | 26 | P26L | cCt | cTt | 2 | 2 | AY.55 | 0.001835 |
S | 26 | P26S | Cct | Tct | 2 | 2 | AY.58 | 0.001815 |
S | 26 | P26S | Cct | Tct | 2 | 2 | AY.62 | 0.000871 |
S | 26 | P26L | cCt | cTt | 2 | 2 | AY.7.1 | 0.000225 |
S | 26 | P26L | cCt | cTt | 2 | 2 | AY.70 | 0.000417 |
S | 26 | P26S | Cct | Tct | 2 | 2 | AY.71 | 0.00095 |
S | 26 | P26L | cCt | cTt | 2 | 2 | AY.75.1 | 0.000361 |
S | 26 | P26S | Cct | Tct | 2 | 2 | AY.84 | 0.000875 |
S | 26 | P26S | Cct | Tct | 2 | 2 | AY.89 | 0.009804 |
S | 26 | P26L | cCt | cTt | 2 | 2 | AY.9.1 | 0.000167 |
S | 26 | P26L | cCt | cTt | 2 | 2 | AY.93 | 0.000546 |
S | 26 | P26L | cCt | cTt | 2 | 2 | AY.99.2 | 0.000184 |
S | 26 | P26S | Cct | Tct | 2 | 2 | B.1.1.171 | 0.007353 |
S | 26 | P26L | cCt | cTt | 2 | 2 | B.1.1.214 | 0.000111 |
S | 26 | P26H | cCt | cAt | 2 | 2 | B.1.1.219 | 0.01 |
S | 26 | P26S | Cct | Tct | 2 | 2 | B.1.1.220 | 0.003717 |
S | 26 | P26L | cCt | cTt | 2 | 2 | B.1.1.25 | 0.001137 |
S | 26 | P26S | Cct | Tct | 2 | 2 | B.1.1.261 | 0.017241 |
S | 26 | P26S | Cct | Tct | 2 | 2 | B.1.1.318 | 0.000604 |
S | 26 | P26S | Cct | Tct | 2 | 2 | B.1.1.332 | 0.0625 |
S | 26 | P26S | Cct | Tct | 2 | 2 | B.1.1.354 | 0.008772 |
S | 26 | P26L | cCt | cTt | 2 | 2 | B.1.1.39 | 0.001019 |
S | 26 | P26S | Cct | Tct | 2 | 2 | B.1.1.526 | 0.007092 |
S | 26 | P26del1 | ccT | cc- | 2 | 2 | B.1.1.7 | 0.000002 |
S | 26 | P26del1 | ccT | cc- | 2 | 2 | B.1.177 | 0.000026 |
S | 26 | P26H | cCt | cAt | 2 | 2 | B.1.177 | 0.000026 |
S | 26 | P26S | Cct | Tct | 2 | 2 | B.1.177.32 | 0.002699 |
S | 26 | P26P | ccT | ccA | 2 | 2 | B.1.177.81 | 0.000379 |
S | 26 | P26del | CCT | --- | 2 | 2 | B.1.177.86 | 0.000367 |
S | 26 | P26S | Cct | Tct | 2 | 2 | B.1.177.87 | 0.001456 |
S | 26 | P26P | ccT | ccC | 2 | 2 | B.1.234 | 0.000264 |
S | 26 | P26L | cCt | cTt | 2 | 2 | B.1.240 | 0.000431 |
S | 26 | P26H | cCt | cAt | 2 | 2 | B.1.241 | 0.001623 |
S | 26 | P26T | Cct | Act | 2 | 2 | B.1.320 | 0.002491 |
S | 26 | P26L | cCt | cTt | 2 | 2 | B.1.348 | 0.036364 |
S | 26 | P26L | cCt | cTt | 2 | 2 | B.1.36.29 | 0.001035 |
S | 26 | P26L | cCt | cTt | 2 | 2 | B.1.400 | 0.000858 |
S | 26 | P26L | cCt | cTt | 2 | 2 | B.1.471 | 0.005464 |
S | 26 | P26del | CCT | --- | 2 | 2 | B.1.525 | 0.000226 |
S | 26 | P26L | cCt | cTt | 2 | 2 | B.1.565 | 0.001621 |
S | 26 | P26L | cCt | cTt | 2 | 2 | B.1.575 | 0.000607 |
S | 26 | P26S | Cct | Tct | 2 | 2 | B.1.595 | 0.000522 |
S | 26 | P26S | Cct | Tct | 2 | 2 | B.1.612 | 0.005305 |
S | 26 | P26S | Cct | Tct | 2 | 2 | B.1.618 | 0.008065 |
S | 26 | P26S | Cct | Tct | 2 | 2 | B.1.628 | 0.000705 |
S | 26 | P26L | cCt | cTt | 2 | 2 | C.1 | 0.004785 |
S | 26 | P26L | cCt | cTt | 2 | 2 | C.14 | 0.008658 |
S | 26 | P26S | Cct | Tct | 2 | 2 | C.35 | 0.001548 |
S | 26 | P26S | Cct | Tct | 2 | 2 | C.36 | 0.001821 |
S | 26 | P26S | Cct | Tct | 2 | 2 | C.37.1 | 0.005236 |
S | 26 | P26A | Cct | Gct | 2 | 2 | P.1 | 0.000032 |
S | 26 | P26S | Cct | Tct | 2 | 2 | Q.1 | 0.000253 |
S | 26 | P26L | cCt | cTt | 2 | 2 | Q.8 | 0.00033 |
S | 26 | P26L | cCt | cTt | 1 | 1 | A.2 | 0.000662 |
S | 26 | P26S | Cct | Tct | 1 | 1 | A.2 | 0.000662 |
S | 26 | P26del | CCT | --- | 1 | 1 | A.2.4 | 0.003367 |
S | 26 | P26L | cCt | cTt | 1 | 1 | A.23.1 | 0.000704 |
S | 26 | P26S | Cct | Tct | 1 | 1 | A.27 | 0.001656 |
S | 26 | P26S | Cct | Tct | 1 | 1 | A.28 | 0.002646 |
S | 26 | P26L | cCt | cTt | 1 | 1 | AA.1 | 0.007246 |
S | 26 | P26S | Cct | Tct | 1 | 1 | AD.2 | 0.000219 |
S | 26 | P26S | Cct | Tct | 1 | 1 | AE.8 | 0.000489 |
S | 26 | P26S | Cct | Tct | 1 | 1 | AH.3 | 0.003802 |
S | 26 | P26C | CCt | TGt | 1 | 1 | All | 0 |
S | 26 | P26G | CCT | GGA | 1 | 1 | All | 0 |
S | 26 | P26P | ccT | ccC | 1 | 1 | AU.3 | 0.00211 |
S | 26 | P26del | CCT | --- | 1 | 1 | AY.100 | 0.000046 |
S | 26 | P26del | CCT | --- | 1 | 1 | AY.101 | 0.00049 |
S | 26 | P26P | ccT | ccG | 1 | 1 | AY.102 | 0.000027 |
S | 26 | P26A | Cct | Gct | 1 | 1 | AY.103 | 0.000006 |
S | 26 | P26R | cCt | cGt | 1 | 1 | AY.106 | 0.000335 |
S | 26 | P26P | ccT | ccC | 1 | 1 | AY.111 | 0.000183 |
S | 26 | P26S | Cct | Tct | 1 | 1 | AY.113 | 0.000142 |
S | 26 | P26H | cCt | cAt | 1 | 1 | AY.116 | 0.000287 |
S | 26 | P26S | Cct | Tct | 1 | 1 | AY.116 | 0.000287 |
S | 26 | P26L | cCt | cTt | 1 | 1 | AY.116 | 0.000287 |
S | 26 | P26H | cCt | cAt | 1 | 1 | AY.117 | 0.000085 |
S | 26 | P26P | ccT | ccC | 1 | 1 | AY.119 | 0.000035 |
S | 26 | P26T | Cct | Act | 1 | 1 | AY.119 | 0.000035 |
S | 26 | P26L | cCt | cTt | 1 | 1 | AY.12 | 0.000316 |
S | 26 | P26L | cCt | cTt | 1 | 1 | AY.120.2.1 | 0.000498 |
S | 26 | P26L | cCt | cTt | 1 | 1 | AY.13 | 0.000161 |
S | 26 | P26L | cCt | cTt | 1 | 1 | AY.16 | 0.00038 |
S | 26 | P26S | Cct | Tct | 1 | 1 | AY.16.1 | 0.00047 |
S | 26 | P26T | Cct | Act | 1 | 1 | AY.19 | 0.00114 |
S | 26 | P26P | ccT | ccC | 1 | 1 | AY.20 | 0.000039 |
S | 26 | P26H | cCt | cAt | 1 | 1 | AY.20 | 0.000039 |
S | 26 | P26L | cCt | cTt | 1 | 1 | AY.23.1 | 0.000417 |
S | 26 | P26S | Cct | Tct | 1 | 1 | AY.24 | 0.000431 |
S | 26 | P26H | cCt | cAt | 1 | 1 | AY.25 | 0.000006 |
S | 26 | P26T | Cct | Act | 1 | 1 | AY.25 | 0.000006 |
S | 26 | P26del | CCT | --- | 1 | 1 | AY.26 | 0.000028 |
S | 26 | P26S | Cct | Tct | 1 | 1 | AY.27 | 0.000065 |
S | 26 | P26R | cCt | cGt | 1 | 1 | AY.29.1 | 0.000221 |
S | 26 | P26del | CCT | --- | 1 | 1 | AY.3 | 0.00001 |
S | 26 | P26H | cCt | cAt | 1 | 1 | AY.3 | 0.00001 |
S | 26 | P26S | Cct | Tct | 1 | 1 | AY.3.1 | 0.000085 |
S | 26 | P26L | cCt | cTt | 1 | 1 | AY.30 | 0.000396 |
S | 26 | P26del | CCT | --- | 1 | 1 | AY.32 | 0.000532 |
S | 26 | P26H | cCt | cAt | 1 | 1 | AY.33 | 0.000067 |
S | 26 | P26A | Cct | Gct | 1 | 1 | AY.34.1 | 0.00051 |
S | 26 | P26T | Cct | Act | 1 | 1 | AY.34.1 | 0.00051 |
S | 26 | P26S | Cct | Tct | 1 | 1 | AY.36 | 0.000148 |
S | 26 | P26del | CCT | --- | 1 | 1 | AY.39 | 0.000025 |
S | 26 | P26S | Cct | Tct | 1 | 1 | AY.39.1 | 0.00004 |
S | 26 | P26S | Cct | Tct | 1 | 1 | AY.39.2 | 0.001541 |
S | 26 | P26P | ccT | ccA | 1 | 1 | AY.4.2 | 0.000022 |
S | 26 | P26H | cCt | cAt | 1 | 1 | AY.4.2 | 0.000022 |
S | 26 | P26L | cCt | cTt | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 26 | P26S | Cct | Tct | 1 | 1 | AY.4.4 | 0.000409 |
S | 26 | P26del | CCT | --- | 1 | 1 | AY.4.5 | 0.000107 |
S | 26 | P26P | ccT | ccA | 1 | 1 | AY.4.5 | 0.000107 |
S | 26 | P26L | cCt | cTt | 1 | 1 | AY.41 | 0.000294 |
S | 26 | P26P | ccT | ccG | 1 | 1 | AY.42 | 0.00004 |
S | 26 | P26H | cCt | cAt | 1 | 1 | AY.42 | 0.00004 |
S | 26 | P26del | CCT | --- | 1 | 1 | AY.42 | 0.00004 |
S | 26 | P26L | cCt | cTt | 1 | 1 | AY.42 | 0.00004 |
S | 26 | P26T | Cct | Act | 1 | 1 | AY.43 | 0.000004 |
S | 26 | P26H | cCt | cAt | 1 | 1 | AY.44 | 0.000006 |
S | 26 | P26del2 | cCT | c-- | 1 | 1 | AY.44 | 0.000006 |
S | 26 | P26H | cCt | cAt | 1 | 1 | AY.45 | 0.000122 |
S | 26 | P26L | cCt | cTt | 1 | 1 | AY.46.5 | 0.000198 |
S | 26 | P26L | cCt | cTt | 1 | 1 | AY.46.6 | 0.000072 |
S | 26 | P26H | cCt | cAt | 1 | 1 | AY.46.6 | 0.000072 |
S | 26 | P26del | CCT | --- | 1 | 1 | AY.47 | 0.000031 |
S | 26 | P26P | ccT | ccC | 1 | 1 | AY.47 | 0.000031 |
S | 26 | P26S | Cct | Tct | 1 | 1 | AY.5.3 | 0.000337 |
S | 26 | P26S | Cct | Tct | 1 | 1 | AY.5.4 | 0.000277 |
S | 26 | P26R | cCt | cGt | 1 | 1 | AY.55 | 0.000917 |
S | 26 | P26L | cCt | cTt | 1 | 1 | AY.57 | 0.000656 |
S | 26 | P26L | cCt | cTt | 1 | 1 | AY.6 | 0.000041 |
S | 26 | P26H | cCt | cAt | 1 | 1 | AY.61 | 0.000105 |
S | 26 | P26T | Cct | Act | 1 | 1 | AY.61 | 0.000105 |
S | 26 | P26L | cCt | cTt | 1 | 1 | AY.63 | 0.000387 |
S | 26 | P26S | Cct | Tct | 1 | 1 | AY.67 | 0.000464 |
S | 26 | P26L | cCt | cTt | 1 | 1 | AY.67 | 0.000464 |
S | 26 | P26S | Cct | Tct | 1 | 1 | AY.68 | 0.000274 |
S | 26 | P26del | CCT | --- | 1 | 1 | AY.68 | 0.000274 |
S | 26 | P26L | cCt | cTt | 1 | 1 | AY.69 | 0.000187 |
S | 26 | P26S | Cct | Tct | 1 | 1 | AY.7.1 | 0.000113 |
S | 26 | P26H | cCt | cAt | 1 | 1 | AY.7.1 | 0.000113 |
S | 26 | P26P | ccT | ccA | 1 | 1 | AY.71 | 0.000475 |
S | 26 | P26S | Cct | Tct | 1 | 1 | AY.74 | 0.000116 |
S | 26 | P26L | cCt | cTt | 1 | 1 | AY.75 | 0.000056 |
S | 26 | P26del | CCT | --- | 1 | 1 | AY.75.1 | 0.00018 |
S | 26 | P26H | cCt | cAt | 1 | 1 | AY.75.1 | 0.00018 |
S | 26 | P26L | cCt | cTt | 1 | 1 | AY.79 | 0.001211 |
S | 26 | P26H | cCt | cAt | 1 | 1 | AY.79 | 0.001211 |
S | 26 | P26L | cCt | cTt | 1 | 1 | AY.80 | 0.001129 |
S | 26 | P26L | cCt | cTt | 1 | 1 | AY.84 | 0.000437 |
S | 26 | P26R | cCt | cGt | 1 | 1 | AY.85 | 0.000427 |
S | 26 | P26H | cCt | cAt | 1 | 1 | AY.87 | 0.000833 |
S | 26 | P26L | cCt | cTt | 1 | 1 | AY.9 | 0.000068 |
S | 26 | P26P | ccT | ccG | 1 | 1 | AY.9.2 | 0.000037 |
S | 26 | P26T | Cct | Act | 1 | 1 | AY.9.2 | 0.000037 |
S | 26 | P26del | CCT | --- | 1 | 1 | AY.9.2 | 0.000037 |
S | 26 | P26L | cCt | cTt | 1 | 1 | AY.9.2 | 0.000037 |
S | 26 | P26L | cCt | cTt | 1 | 1 | AY.92 | 0.000287 |
S | 26 | P26S | Cct | Tct | 1 | 1 | AY.93 | 0.000273 |
S | 26 | P26L | cCt | cTt | 1 | 1 | AY.94 | 0.000443 |
S | 26 | P26H | cCt | cAt | 1 | 1 | AY.96 | 0.002075 |
S | 26 | P26del | CCT | --- | 1 | 1 | AY.98 | 0.000079 |
S | 26 | P26del1 | ccT | cc- | 1 | 1 | AY.98 | 0.000079 |
S | 26 | P26L | cCt | cTt | 1 | 1 | AY.98.1 | 0.000048 |
S | 26 | P26H | cCt | cAt | 1 | 1 | AY.98.1 | 0.000048 |
S | 26 | P26L | cCt | cTt | 1 | 1 | AY.99 | 0.001049 |
S | 26 | P26A | CcT | GcG | 1 | 1 | B | 0.000128 |
S | 26 | P26T | Cct | Act | 1 | 1 | B | 0.000128 |
S | 26 | P26T | Cct | Act | 1 | 1 | B.1.1 | 0.000018 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.1.1 | 0.000327 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.1.117 | 0.009709 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.1.147 | 0.090909 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.1.157 | 0.000913 |
S | 26 | P26H | cCt | cAt | 1 | 1 | B.1.1.164 | 0.005155 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.1.176 | 0.000439 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.1.189 | 0.001513 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.1.200 | 0.007463 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.1.207 | 0.001182 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.1.222 | 0.000204 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.1.236 | 0.006897 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.1.241 | 0.00207 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.1.25 | 0.000569 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.1.265 | 0.003155 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.1.28 | 0.000311 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.1.284 | 0.000107 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.1.302 | 0.002075 |
S | 26 | P26del | CCT | --- | 1 | 1 | B.1.1.306 | 0.000438 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.1.312 | 0.001912 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.1.312 | 0.001912 |
S | 26 | P26del | CCT | --- | 1 | 1 | B.1.1.315 | 0.008475 |
S | 26 | P26P | ccT | ccA | 1 | 1 | B.1.1.317 | 0.000412 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.1.318 | 0.000302 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.1.325 | 0.025641 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.1.328 | 0.016949 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.1.33 | 0.000421 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.1.348 | 0.000796 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.1.359 | 0.027778 |
S | 26 | P26R | cCt | cGt | 1 | 1 | B.1.1.362 | 0.005618 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.1.37 | 0.000193 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.1.377 | 0.001381 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.1.39 | 0.00051 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.1.397 | 0.002252 |
S | 26 | P26del | CCT | --- | 1 | 1 | B.1.1.401 | 0.066667 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.1.411 | 0.014706 |
S | 26 | P26P | ccT | ccC | 1 | 1 | B.1.1.412 | 0.007634 |
S | 26 | P26P | ccT | ccC | 1 | 1 | B.1.1.418 | 0.022727 |
S | 26 | P26T | Cct | Act | 1 | 1 | B.1.1.420 | 0.001006 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.1.430 | 0.041667 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.1.431 | 0.016129 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.1.432 | 0.001266 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.1.432 | 0.001266 |
S | 26 | P26del | CCT | --- | 1 | 1 | B.1.1.46 | 0.004367 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.1.50 | 0.000679 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.1.523 | 0.001563 |
S | 26 | P26P | ccT | ccA | 1 | 1 | B.1.1.523 | 0.001563 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.1.59 | 0.006494 |
S | 26 | P26A | Cct | Gct | 1 | 1 | B.1.1.7 | 0.000001 |
S | 26 | P26G | CCT | GGA | 1 | 1 | B.1.1.7 | 0.000001 |
S | 26 | P26C | CCt | TGt | 1 | 1 | B.1.1.7 | 0.000001 |
S | 26 | P26del2 | cCT | c-- | 1 | 1 | B.1.1.7 | 0.000001 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.1.71 | 0.006061 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.1.8 | 0.003584 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.111 | 0.001175 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.118 | 0.006711 |
S | 26 | P26A | Cct | Gct | 1 | 1 | B.1.120 | 0.007692 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.120 | 0.007692 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.126 | 0.001276 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.146 | 0.004237 |
S | 26 | P26H | cCt | cAt | 1 | 1 | B.1.147 | 0.000756 |
S | 26 | P26R | cCt | cGt | 1 | 1 | B.1.160 | 0.000031 |
S | 26 | P26P | ccT | ccC | 1 | 1 | B.1.160.16 | 0.000929 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.160.16 | 0.000929 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.160.30 | 0.002976 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.160.9 | 0.007194 |
S | 26 | P26T | Cct | Act | 1 | 1 | B.1.177 | 0.000013 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.177.15 | 0.000631 |
S | 26 | P26del | CCT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.177.19 | 0.001431 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.177.21 | 0.000076 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.177.30 | 0.002513 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.177.33 | 0.001645 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.177.35 | 0.000691 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.177.48 | 0.003125 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.177.5 | 0.001242 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.177.51 | 0.004566 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.177.54 | 0.000606 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.177.56 | 0.000668 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.177.59 | 0.016129 |
S | 26 | P26T | Cct | Act | 1 | 1 | B.1.177.60 | 0.000218 |
S | 26 | P26del | CCT | --- | 1 | 1 | B.1.177.60 | 0.000218 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.177.63 | 0.002703 |
S | 26 | P26del | CCT | --- | 1 | 1 | B.1.177.68 | 0.015152 |
S | 26 | P26del | CCT | --- | 1 | 1 | B.1.177.7 | 0.000165 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.177.7 | 0.000165 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.177.75 | 0.001041 |
S | 26 | P26del | CCT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.177.83 | 0.001481 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.177.86 | 0.000183 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.179 | 0.003759 |
S | 26 | P26del1 | ccT | cc- | 1 | 1 | B.1.2 | 0.000009 |
S | 26 | P26R | cCt | cGt | 1 | 1 | B.1.2 | 0.000009 |
S | 26 | P26del | CCT | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.210 | 0.002132 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.214 | 0.003663 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.214.2 | 0.0006 |
S | 26 | P26del | CCT | --- | 1 | 1 | B.1.221 | 0.000071 |
S | 26 | P26H | cCt | cAt | 1 | 1 | B.1.221 | 0.000071 |
S | 26 | P26H | cCt | cAt | 1 | 1 | B.1.223 | 0.002778 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.234 | 0.000132 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.236 | 0.002053 |
S | 26 | P26T | Cct | Act | 1 | 1 | B.1.236 | 0.002053 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.239 | 0.001221 |
S | 26 | P26P | ccT | ccC | 1 | 1 | B.1.243 | 0.00007 |
S | 26 | P26R | cCt | cGt | 1 | 1 | B.1.258 | 0.000067 |
S | 26 | P26del | CCT | --- | 1 | 1 | B.1.258 | 0.000067 |
S | 26 | P26T | Cct | Act | 1 | 1 | B.1.258 | 0.000067 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.258.14 | 0.00098 |
S | 26 | P26P | ccT | ccC | 1 | 1 | B.1.258.4 | 0.003448 |
S | 26 | P26H | cCt | cAt | 1 | 1 | B.1.305 | 0.002151 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.311 | 0.000275 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.324 | 0.001605 |
S | 26 | P26H | cCt | cAt | 1 | 1 | B.1.351 | 0.00003 |
S | 26 | P26H | cCt | cAt | 1 | 1 | B.1.356 | 0.001727 |
S | 26 | P26del | CCT | --- | 1 | 1 | B.1.36 | 0.000146 |
S | 26 | P26P | ccT | ccC | 1 | 1 | B.1.36 | 0.000146 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.36.1 | 0.00114 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.36.17 | 0.000494 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.36.17 | 0.000494 |
S | 26 | P26del | CCT | --- | 1 | 1 | B.1.36.17 | 0.000494 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.36.18 | 0.00042 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.36.27 | 0.000763 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.362 | 0.001541 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.382 | 0.008929 |
S | 26 | P26del | CCT | --- | 1 | 1 | B.1.396 | 0.000706 |
S | 26 | P26H | cCt | cAt | 1 | 1 | B.1.398 | 0.002976 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.399 | 0.001934 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.400 | 0.000429 |
S | 26 | P26P | ccT | ccA | 1 | 1 | B.1.404 | 0.001302 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.404 | 0.001302 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.415 | 0.014286 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.416 | 0.001269 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.416 | 0.001269 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.426 | 0.001009 |
S | 26 | P26H | cCt | cAt | 1 | 1 | B.1.429 | 0.000024 |
S | 26 | P26del | CCT | --- | 1 | 1 | B.1.429 | 0.000024 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.433 | 0.003195 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.438.1 | 0.000107 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.468 | 0.005714 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.470 | 0.001404 |
S | 26 | P26P | ccT | ccC | 1 | 1 | B.1.497 | 0.000315 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.517 | 0.000427 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.517 | 0.000427 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.521 | 0.004975 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.533 | 0.009615 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.538 | 0.008065 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.541 | 0.004425 |
S | 26 | P26F | CCt | TTt | 1 | 1 | B.1.544 | 0.006024 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.561 | 0.000397 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.564 | 0.000426 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.564 | 0.000426 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.564.1 | 0.001577 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.568 | 0.001111 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.573 | 0.006098 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.574 | 0.002151 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.575 | 0.000303 |
S | 26 | P26P | ccT | ccC | 1 | 1 | B.1.576 | 0.000907 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.590 | 0.004545 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.590 | 0.004545 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.591 | 0.010638 |
S | 26 | P26P | ccT | ccG | 1 | 1 | B.1.596 | 0.000087 |
S | 26 | P26del1 | ccT | cc- | 1 | 1 | B.1.596 | 0.000087 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.605 | 0.005952 |
S | 26 | P26del | CCT | --- | 1 | 1 | B.1.605 | 0.005952 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.617.1 | 0.000129 |
S | 26 | P26R | cCt | cGt | 1 | 1 | B.1.617.2 | 0.000004 |
S | 26 | P26T | Cct | Act | 1 | 1 | B.1.617.2 | 0.000004 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.619 | 0.000871 |
S | 26 | P26del | CCT | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 26 | P26T | Cct | Act | 1 | 1 | B.1.621 | 0.000089 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.623 | 0.000536 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.630 | 0.005236 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.631 | 0.003367 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.1.632 | 0.006711 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.9.5 | 0.005682 |
S | 26 | P26L | cCt | cTt | 1 | 1 | B.1.93 | 0.000934 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.3 | 0.000831 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.39 | 0.002331 |
S | 26 | P26A | Cct | Gct | 1 | 1 | B.40 | 0.000364 |
S | 26 | P26P | ccT | ccA | 1 | 1 | B.40 | 0.000364 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.6 | 0.00091 |
S | 26 | P26S | Cct | Tct | 1 | 1 | B.6.6 | 0.000889 |
S | 26 | P26S | Cct | Tct | 1 | 1 | C.1 | 0.002392 |
S | 26 | P26S | Cct | Tct | 1 | 1 | C.16 | 0.00106 |
S | 26 | P26S | Cct | Tct | 1 | 1 | C.36.1 | 0.004149 |
S | 26 | P26S | Cct | Tct | 1 | 1 | C.36.2 | 0.034483 |
S | 26 | P26L | cCt | cTt | 1 | 1 | C.36.3 | 0.000567 |
S | 26 | P26S | Cct | Tct | 1 | 1 | C.36.3 | 0.000567 |
S | 26 | P26H | cCt | cAt | 1 | 1 | C.37 | 0.000116 |
S | 26 | P26P | ccT | ccC | 1 | 1 | C.37 | 0.000116 |
S | 26 | P26L | cCt | cTt | 1 | 1 | C.38 | 0.008065 |
S | 26 | P26L | cCt | cTt | 1 | 1 | D.2 | 0.000075 |
S | 26 | P26F | CCt | TTt | 1 | 1 | D.2 | 0.000075 |
S | 26 | P26P | ccT | ccC | 1 | 1 | D.2 | 0.000075 |
S | 26 | P26L | cCt | cTt | 1 | 1 | L.3 | 0.003546 |
S | 26 | P26T | Cct | Act | 1 | 1 | P.1 | 0.000016 |
S | 26 | P26F | CCt | TTt | 1 | 1 | P.1.10 | 0.000269 |
S | 26 | P26F | CCt | TTt | 1 | 1 | P.1.14 | 0.000048 |
S | 26 | P26F | CCt | TTt | 1 | 1 | P.1.16 | 0.000374 |
S | 26 | P26L | cCt | cTt | 1 | 1 | P.1.7 | 0.000319 |
S | 26 | P26H | cCt | cAt | 1 | 1 | P.2 | 0.000187 |
S | 26 | P26R | cCt | cGt | 1 | 1 | P.2 | 0.000187 |
S | 26 | P26S | Cct | Tct | 1 | 1 | P.7 | 0.004367 |
S | 26 | P26del | CCT | --- | 1 | 1 | Q.1 | 0.000126 |
S | 26 | P26S | Cct | Tct | 1 | 1 | Q.3 | 0.000145 |
S | 26 | P26S | Cct | Tct | 1 | 1 | Q.4 | 0.000455 |
S | 26 | P26R | cCt | cGt | 1 | 1 | Q.8 | 0.000165 |
S | 26 | P26S | Cct | Tct | 1 | 1 | U.2 | 0.008772 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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