CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 255 & Codon = tTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S255S255FnonsyntCttTt846084590.99988222325-22327

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S255S255FtCttTt84598460All0.001618
S255S255FtCttTt15601560AY.1060.522438
S255S255FtCttTt12461246AY.40.001939
S255S255FtCttTt673673B.1.1.70.000602
S255S255FtCttTt629629R.10.056616
S255S255FtCttTt565565C.300.97582
S255S255FtCttTt398398AY.9.10.033322
S255S255FtCttTt305305AY.1030.001894
S255S255FtCttTt156156B.1.617.20.000587
S255S255FtCttTt149149C.30.11
S255S255FtCttTt143143AY.440.00087
S255S255FtCttTt135136B.1.20.001189
S255S255FtCttTt132132AY.430.000585
S255S255FtCttTt112112AY.160.042521
S255S255FtCttTt110110AY.60.004524
S255S255FtCttTt109109B.1.10.001977
S255S255FtCttTt108108P.10.001701
S255S255FtCttTt8989B.1.1.5190.003534
S255S255FtCttTt8282AY.940.036299
S255S255FtCttTt8181AY.250.000487
S255S255FtCttTt7272AD.20.015765
S255S255FtCttTt6363AY.390.001557
S255S255FtCttTt6363B.10.000577
S255S255FtCttTt6161AY.260.001727
S255S255FtCttTt5858B.1.1770.000764
S255S255FtCttTt5656AY.30.000557
S255S255FtCttTt5656AY.50.001156
S255S255FtCttTt4646AY.1200.00171
S255S255FtCttTt4242AY.230.002929
S255S255FtCttTt4141AY.3.10.003496
S255S255FtCttTt4040AY.99.20.003686
S255S255FtCttTt3737B.1.1470.027967
S255S255FtCttTt3636B.1.2430.002505
S255S255FtCttTt3333AY.1020.000875
S255S255FtCttTt2929AY.290.000457
S255S255FtCttTt2929B.1.5260.000682
S255S255FtCttTt2828AY.200.001088
S255S255FtCttTt2828B.1.177.560.018692
S255S255FtCttTt2525B.1.2340.003299
S255S255FtCttTt2525B.1.3510.000743
S255S255FtCttTt2424AY.420.000966
S255S255FtCttTt2222AY.460.00229
S255S255FtCttTt2222B.1.2580.001464
S255S255FtCttTt2020B.1.6210.00177
S255S255FtCttTt1818B.1.3110.004942
S255S255FtCttTt1717AY.540.001621
S255S255FtCttTt1717B.1.1600.00053
S255S255FtCttTt1616B.1.4290.000376
S255S255FtCttTt1515AY.7.10.001691
S255S255FtCttTt1313AY.1000.000598
S255S255FtCttTt1313AY.1210.001759
S255S255FtCttTt1313B.1.1.2140.000721
S255S255FtCttTt1111AY.1170.00093
S255S255FtCttTt1111B.1.438.10.00118
S255S255FtCttTt1010AY.4.20.000217
S255S255FtCttTt1010B.1.1.280.003112
S255S255FtCttTt1010B.1.177.70.001649
S255S255FtCttTt1010C.360.009107
S255S255FtCttTt99AY.1190.000318
S255S255FtCttTt99B.1.2210.000639
S255S255FtCttTt99B.1.617.10.001161
S255S255FtCttTt99P.1.100.002425
S255S255FtCttTt88AY.1160.002294
S255S255FtCttTt88AY.270.000518
S255S255FtCttTt88AY.39.10.000317
S255S255FtCttTt88AY.46.60.000578
S255S255FtCttTt88AY.9.20.000294
S255S255FtCttTt88B.1.177.440.004152
S255S255FtCttTt88B.1.4270.000404
S255S255FtCttTt77AY.1130.000997
S255S255FtCttTt77AY.1180.000439
S255S255FtCttTt77AY.34.10.00357
S255S255FtCttTt77AY.360.001037
S255S255FtCttTt77AY.620.00305
S255S255FtCttTt77B.1.1.2220.001428
S255S255FtCttTt77B.1.4000.003003
S255S255FtCttTt77B.1.4330.022364
S255S255FtCttTt77P.1.140.000335
S255S255FtCttTt66AY.4.30.005051
S255S255FtCttTt66AY.4.50.000645
S255S255FtCttTt66AY.510.005455
S255S255FtCttTt66AY.980.000474
S255S255FtCttTt66AY.98.10.000291
S255S255FtCttTt66B.1.177.730.003398
S255S255FtCttTt66B.1.6190.005226
S255S255FtCttTt66B.1.6370.000438
S255S255FtCttTt66D.20.00045
S255S255FtCttTt55A0.001935
S255S255FtCttTt55AY.4.2.10.000745
S255S255FtCttTt55AY.7.20.002796
S255S255FtCttTt55B0.000639
S255S255FtCttTt55B.1.160.160.004647
S255S255FtCttTt55B.1.177.100.00439
S255S255FtCttTt55B.1.3690.001426
S255S255FtCttTt55B.1.5250.000566
S255S255FtCttTt55B.1.6200.00473
S255S255FtCttTt55P.1.20.00578
S255S255FtCttTt55W.10.043478
S255S255FtCttTt44A.2.50.001996
S255S255FtCttTt44AY.670.001857
S255S255FtCttTt44AY.750.000224
S255S255FtCttTt44B.1.1.3720.002755
S255S255FtCttTt44B.1.177.810.000757
S255S255FtCttTt44B.1.360.000584
S255S255FtCttTt44B.1.36.350.010417
S255S255FtCttTt44B.1.5960.000349
S255S255FtCttTt44C.260.029412
S255S255FtCttTt33AY.100.00159
S255S255FtCttTt33AY.116.10.000934
S255S255FtCttTt33AY.140.000264
S255S255FtCttTt33AY.330.0002
S255S255FtCttTt33AY.450.000365
S255S255FtCttTt33AY.470.000093
S255S255FtCttTt33AY.5.30.001012
S255S255FtCttTt33AY.590.001589
S255S255FtCttTt33AY.610.000314
S255S255FtCttTt33AY.640.001786
S255S255FtCttTt33AY.690.00056
S255S255FtCttTt33AY.90.000203
S255S255FtCttTt33B.1.1.3480.002389
S255S255FtCttTt33B.1.1.530.041096
S255S255FtCttTt33B.1.214.20.001799
S255S255FtCttTt33B.1.4160.003807
S255S255FtCttTt33B.1.4380.019608
S255S255FtCttTt33B.1.4680.017143
S255S255FtCttTt33B.520.030303
S255S255FtCttTt33P.20.00056
S255S255FtCttTt33W.40.004054
S255S255FtCttTt22A.2.5.30.020619
S255S255FtCttTt22AQ.10.142857
S255S255FtCttTt22AY.1140.000462
S255S255FtCttTt22AY.130.000322
S255S255FtCttTt22AY.16.10.00094
S255S255FtCttTt22AY.300.000791
S255S255FtCttTt22AY.400.001929
S255S255FtCttTt22AY.46.40.000329
S255S255FtCttTt22AY.530.000575
S255S255FtCttTt22AY.680.000547
S255S255FtCttTt22AY.75.10.000361
S255S255FtCttTt22AY.760.009662
S255S255FtCttTt22AY.900.001369
S255S255FtCttTt22B.1.1.1690.036364
S255S255FtCttTt22B.1.1.1760.000879
S255S255FtCttTt22B.1.1.3050.007722
S255S255FtCttTt22B.1.1.710.012121
S255S255FtCttTt22B.1.177.210.000153
S255S255FtCttTt22B.1.177.450.000762
S255S255FtCttTt22B.1.177.540.001213
S255S255FtCttTt22B.1.177.860.000367
S255S255FtCttTt22B.1.2400.000431
S255S255FtCttTt22B.1.2410.001623
S255S255FtCttTt22B.1.2500.028986
S255S255FtCttTt22B.1.3240.00321
S255S255FtCttTt22B.1.36.220.002415
S255S255FtCttTt22B.1.3910.002255
S255S255FtCttTt22B.1.4320.022472
S255S255FtCttTt22B.1.4700.002809
S255S255FtCttTt22B.1.5820.000981
S255S255FtCttTt22B.1.621.10.001012
S255S255FtCttTt22P.1.120.000968
S255S255FtCttTt22P.1.150.000465
S255S255FtCttTt22Q.80.00033
S255S255FtCttTt11A.10.000282
S255S255FtCttTt11A.20.000662
S255S255FtCttTt11A.23.10.000704
S255S255FtCttTt11AE.80.000489
S255S255FtCttTt11AY.10.000396
S255S255FtCttTt11AY.1050.000643
S255S255FtCttTt11AY.1100.000113
S255S255FtCttTt11AY.20.000356
S255S255FtCttTt11AY.23.10.000417
S255S255FtCttTt11AY.29.10.000221
S255S255FtCttTt11AY.39.1.10.000725
S255S255FtCttTt11AY.410.000294
S255S255FtCttTt11AY.46.50.000198
S255S255FtCttTt11AY.570.000656
S255S255FtCttTt11AY.700.000209
S255S255FtCttTt11AY.740.000116
S255S255FtCttTt11AY.770.001127
S255S255FtCttTt11AY.830.001724
S255S255FtCttTt11AY.850.000427
S255S255FtCttTt11AY.870.000833
S255S255FtCttTt11AY.910.00073
S255S255FtCttTt11AY.920.000287
S255S255FtCttTt11AY.950.000761
S255S255FtCttTt11B.1.1.10.000327
S255S255FtCttTt11B.1.1.1610.003534
S255S255FtCttTt11B.1.1.1640.005155
S255S255FtCttTt11B.1.1.1700.001247
S255S255FtCttTt11B.1.1.2160.00089
S255S255FtCttTt11B.1.1.2200.001859
S255S255FtCttTt11B.1.1.250.000569
S255S255FtCttTt11B.1.1.2800.003086
S255S255FtCttTt11B.1.1.2840.000107
S255S255FtCttTt11B.1.1.3010.001179
S255S255FtCttTt11B.1.1.3110.000358
S255S255FtCttTt11B.1.1.3170.000412
S255S255FtCttTt11B.1.1.3290.003846
S255S255FtCttTt11B.1.1.3370.003597
S255S255FtCttTt11B.1.1.370.000193
S255S255FtCttTt11B.1.1.410.006329
S255S255FtCttTt11B.1.1.4110.014706
S255S255FtCttTt11B.1.1.4160.000905
S255S255FtCttTt11B.1.1.4320.001266
S255S255FtCttTt11B.1.1.4340.000349
S255S255FtCttTt11B.1.1.4800.025
S255S255FtCttTt11B.1.1.5070.008696
S255S255FtCttTt11B.1.1.5230.001563
S255S255FtCttTt11B.1.1.5250.005464
S255S255FtCttTt11B.1.1.580.005376
S255S255FtCttTt11B.1.1.630.000386
S255S255FtCttTt11B.1.110.30.000718
S255S255FtCttTt11B.1.1150.021739
S255S255FtCttTt11B.1.1260.001276
S255S255FtCttTt11B.1.1400.018868
S255S255FtCttTt11B.1.1430.021277
S255S255FtCttTt11B.1.160.140.002119
S255S255FtCttTt11B.1.160.280.002924
S255S255FtCttTt11B.1.160.330.004425
S255S255FtCttTt11B.1.160.70.002079
S255S255FtCttTt11B.1.177.170.000821
S255S255FtCttTt11B.1.177.230.003236
S255S255FtCttTt11B.1.177.240.001295
S255S255FtCttTt11B.1.177.350.000691
S255S255FtCttTt11B.1.177.570.000281
S255S255FtCttTt11B.1.177.60.000977
S255S255FtCttTt11B.1.177.750.001041
S255S255FtCttTt11B.1.177.820.000477
S255S255FtCttTt11B.1.1890.004292
S255S255FtCttTt11B.1.1920.009259
S255S255FtCttTt11B.1.2060.000816
S255S255FtCttTt11B.1.2100.002132
S255S255FtCttTt11B.1.2140.003663
S255S255FtCttTt11B.1.22.10.03125
S255S255FtCttTt11B.1.2270.047619
S255S255FtCttTt11B.1.2370.004975
S255S255FtCttTt11B.1.258.170.000104
S255S255FtCttTt11B.1.2810.021739
S255S255FtCttTt11B.1.2920.058824
S255S255FtCttTt11B.1.2930.0125
S255S255FtCttTt11B.1.351.10.038462
S255S255FtCttTt11B.1.36.70.004
S255S255FtCttTt11B.1.36.80.001
S255S255FtCttTt11B.1.3670.000792
S255S255FtCttTt11B.1.3960.000706
S255S255FtCttTt11B.1.4040.001302
S255S255FtCttTt11B.1.428.20.033333
S255S255FtCttTt11B.1.466.20.000391
S255S255FtCttTt11B.1.5040.03125
S255S255FtCttTt11B.1.5090.000866
S255S255FtCttTt11B.1.5170.000427
S255S255FtCttTt11B.1.5400.009709
S255S255FtCttTt11B.1.5760.000907
S255S255FtCttTt11B.1.5770.000687
S255S255FtCttTt11B.1.5880.00091
S255S255FtCttTt11B.1.5950.000261
S255S255FtCttTt11B.1.80.001972
S255S255FtCttTt11B.1.90.006173
S255S255FtCttTt11B.30.000831
S255S255FtCttTt11B.610.005747
S255S255FtCttTt11C.10.002392
S255S255FtCttTt11C.330.058824
S255S255FtCttTt11C.36.30.000567
S255S255FtCttTt11C.370.000116
S255S255FtCttTt11C.50.090909
S255S255FtCttTt11N.50.001767
S255S255FtCttTt11P.1.70.000319
S255S255FtCttTt11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.