CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 255 | S255F | nonsyn | tCt | tTt | 8460 | 8459 | 0.999882 | 22325-22327 | |
S | 255 | S255F | nonsyn | tCT | tTC | 8460 | 1 | 0.000118203 | 22325-22327 | |
S | 255 | S255S | syn | tcT | tcA | 371 | 148 | 0.398922 | 22325-22327 | |
S | 255 | S255S | syn | tcT | tcC | 371 | 142 | 0.382749 | 22325-22327 | |
S | 255 | S255S | syn | tcT | tcG | 371 | 81 | 0.218329 | 22325-22327 | |
S | 255 | S255Y | nonsyn | tCt | tAt | 312 | 312 | 1 | 22325-22327 | |
S | 255 | S255P | nonsyn | Tct | Cct | 243 | 241 | 0.99177 | 22325-22327 | |
S | 255 | S255P | nonsyn | TcT | CcC | 243 | 2 | 0.00823045 | 22325-22327 | |
S | 255 | S255del | del | TCT | --- | 140 | 140 | 1 | 22325-22327 | |
S | 255 | S255L | nonsyn | tCT | tTA | 18 | 16 | 0.888889 | 22325-22327 | |
S | 255 | S255L | nonsyn | tCT | tTG | 18 | 2 | 0.111111 | 22325-22327 | |
S | 255 | S255A | nonsyn | Tct | Gct | 15 | 15 | 1 | 22325-22327 | |
S | 255 | S255T | nonsyn | Tct | Act | 14 | 14 | 1 | 22325-22327 | |
S | 255 | S255C | nonsyn | tCt | tGt | 7 | 7 | 1 | 22325-22327 | |
S | 255 | S255W | nonsyn | tCT | tGG | 1 | 1 | 1 | 22325-22327 | |
S | 255 | S255I | nonsyn | TCt | ATt | 1 | 1 | 1 | 22325-22327 | |
S | 255 | S255V | nonsyn | TCt | GTt | 1 | 1 | 1 | 22325-22327 | |
S | 255 | S255D | nonsyn | TCt | GAt | 1 | 1 | 1 | 22325-22327 | |
S | 255 | S255K | nonsyn | TCT | AAG | 1 | 1 | 1 | 22325-22327 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 255 | S255F | tCt | tTt | 8459 | 8460 | All | 0.001618 |
S | 255 | S255F | tCT | tTC | 1 | 8460 | All | 0 |
S | 255 | S255F | tCt | tTt | 1560 | 1560 | AY.106 | 0.522438 |
S | 255 | S255F | tCt | tTt | 1246 | 1246 | AY.4 | 0.001939 |
S | 255 | S255F | tCt | tTt | 673 | 673 | B.1.1.7 | 0.000602 |
S | 255 | S255F | tCt | tTt | 629 | 629 | R.1 | 0.056616 |
S | 255 | S255F | tCt | tTt | 565 | 565 | C.30 | 0.97582 |
S | 255 | S255F | tCt | tTt | 398 | 398 | AY.9.1 | 0.033322 |
S | 255 | S255S | tcT | tcA | 148 | 371 | All | 0.000028 |
S | 255 | S255S | tcT | tcC | 142 | 371 | All | 0.000027 |
S | 255 | S255S | tcT | tcG | 81 | 371 | All | 0.000015 |
S | 255 | S255Y | tCt | tAt | 312 | 312 | All | 0.00006 |
S | 255 | S255F | tCt | tTt | 305 | 305 | AY.103 | 0.001894 |
S | 255 | S255P | Tct | Cct | 241 | 243 | All | 0.000046 |
S | 255 | S255P | TcT | CcC | 2 | 243 | All | 0 |
S | 255 | S255Y | tCt | tAt | 185 | 185 | B.1.1.284 | 0.019869 |
S | 255 | S255F | tCt | tTt | 156 | 156 | B.1.617.2 | 0.000587 |
S | 255 | S255F | tCt | tTt | 149 | 149 | C.30.1 | 1 |
S | 255 | S255F | tCt | tTt | 143 | 143 | AY.44 | 0.00087 |
S | 255 | S255del | TCT | --- | 140 | 140 | All | 0.000027 |
S | 255 | S255P | Tct | Cct | 140 | 140 | AY.25 | 0.000842 |
S | 255 | S255F | tCt | tTt | 135 | 136 | B.1.2 | 0.001189 |
S | 255 | S255F | tCT | tTC | 1 | 136 | B.1.2 | 0.000009 |
S | 255 | S255S | tcT | tcA | 130 | 133 | B.1.429 | 0.003059 |
S | 255 | S255S | tcT | tcG | 2 | 133 | B.1.429 | 0.000047 |
S | 255 | S255S | tcT | tcC | 1 | 133 | B.1.429 | 0.000024 |
S | 255 | S255F | tCt | tTt | 132 | 132 | AY.43 | 0.000585 |
S | 255 | S255F | tCt | tTt | 112 | 112 | AY.16 | 0.042521 |
S | 255 | S255F | tCt | tTt | 110 | 110 | AY.6 | 0.004524 |
S | 255 | S255F | tCt | tTt | 109 | 109 | B.1.1 | 0.001977 |
S | 255 | S255F | tCt | tTt | 108 | 108 | P.1 | 0.001701 |
S | 255 | S255F | tCt | tTt | 89 | 89 | B.1.1.519 | 0.003534 |
S | 255 | S255F | tCt | tTt | 82 | 82 | AY.94 | 0.036299 |
S | 255 | S255F | tCt | tTt | 81 | 81 | AY.25 | 0.000487 |
S | 255 | S255F | tCt | tTt | 72 | 72 | AD.2 | 0.015765 |
S | 255 | S255F | tCt | tTt | 63 | 63 | AY.39 | 0.001557 |
S | 255 | S255F | tCt | tTt | 63 | 63 | B.1 | 0.000577 |
S | 255 | S255F | tCt | tTt | 61 | 61 | AY.26 | 0.001727 |
S | 255 | S255Y | tCt | tAt | 60 | 60 | B.1.1.7 | 0.000054 |
S | 255 | S255F | tCt | tTt | 58 | 58 | B.1.177 | 0.000764 |
S | 255 | S255F | tCt | tTt | 56 | 56 | AY.3 | 0.000557 |
S | 255 | S255F | tCt | tTt | 56 | 56 | AY.5 | 0.001156 |
S | 255 | S255F | tCt | tTt | 46 | 46 | AY.120 | 0.00171 |
S | 255 | S255F | tCt | tTt | 42 | 42 | AY.23 | 0.002929 |
S | 255 | S255F | tCt | tTt | 41 | 41 | AY.3.1 | 0.003496 |
S | 255 | S255del | TCT | --- | 41 | 41 | B.1.1.7 | 0.000037 |
S | 255 | S255F | tCt | tTt | 40 | 40 | AY.99.2 | 0.003686 |
S | 255 | S255F | tCt | tTt | 37 | 37 | B.1.147 | 0.027967 |
S | 255 | S255F | tCt | tTt | 36 | 36 | B.1.243 | 0.002505 |
S | 255 | S255F | tCt | tTt | 33 | 33 | AY.102 | 0.000875 |
S | 255 | S255S | tcT | tcG | 30 | 30 | N.10 | 0.882353 |
S | 255 | S255F | tCt | tTt | 29 | 29 | AY.29 | 0.000457 |
S | 255 | S255F | tCt | tTt | 29 | 29 | B.1.526 | 0.000682 |
S | 255 | S255F | tCt | tTt | 28 | 28 | AY.20 | 0.001088 |
S | 255 | S255F | tCt | tTt | 28 | 28 | B.1.177.56 | 0.018692 |
S | 255 | S255S | tcT | tcC | 27 | 27 | B.1.234 | 0.003562 |
S | 255 | S255F | tCt | tTt | 25 | 25 | B.1.234 | 0.003299 |
S | 255 | S255F | tCt | tTt | 25 | 25 | B.1.351 | 0.000743 |
S | 255 | S255F | tCt | tTt | 24 | 24 | AY.42 | 0.000966 |
S | 255 | S255F | tCt | tTt | 22 | 22 | AY.46 | 0.00229 |
S | 255 | S255F | tCt | tTt | 22 | 22 | B.1.258 | 0.001464 |
S | 255 | S255S | tcT | tcC | 15 | 21 | AY.103 | 0.000093 |
S | 255 | S255S | tcT | tcG | 6 | 21 | AY.103 | 0.000037 |
S | 255 | S255S | tcT | tcC | 12 | 20 | B.1.1.7 | 0.000011 |
S | 255 | S255S | tcT | tcG | 4 | 20 | B.1.1.7 | 0.000004 |
S | 255 | S255S | tcT | tcA | 4 | 20 | B.1.1.7 | 0.000004 |
S | 255 | S255F | tCt | tTt | 20 | 20 | B.1.621 | 0.00177 |
S | 255 | S255L | tCT | tTA | 16 | 18 | All | 0.000003 |
S | 255 | S255L | tCT | tTG | 2 | 18 | All | 0 |
S | 255 | S255F | tCt | tTt | 18 | 18 | B.1.311 | 0.004942 |
S | 255 | S255F | tCt | tTt | 17 | 17 | AY.54 | 0.001621 |
S | 255 | S255F | tCt | tTt | 17 | 17 | B.1.160 | 0.00053 |
S | 255 | S255P | Tct | Cct | 16 | 16 | B.1.1.389 | 0.09697 |
S | 255 | S255F | tCt | tTt | 16 | 16 | B.1.429 | 0.000376 |
S | 255 | S255A | Tct | Gct | 15 | 15 | All | 0.000003 |
S | 255 | S255F | tCt | tTt | 15 | 15 | AY.7.1 | 0.001691 |
S | 255 | S255L | tCT | tTA | 15 | 15 | B.1.429 | 0.000353 |
S | 255 | S255T | Tct | Act | 14 | 14 | All | 0.000003 |
S | 255 | S255F | tCt | tTt | 13 | 13 | AY.100 | 0.000598 |
S | 255 | S255F | tCt | tTt | 13 | 13 | AY.121 | 0.001759 |
S | 255 | S255S | tcT | tcC | 9 | 13 | B.1 | 0.000082 |
S | 255 | S255S | tcT | tcG | 4 | 13 | B.1 | 0.000037 |
S | 255 | S255F | tCt | tTt | 13 | 13 | B.1.1.214 | 0.000721 |
S | 255 | S255P | Tct | Cct | 13 | 13 | B.1.2 | 0.000114 |
S | 255 | S255P | Tct | Cct | 12 | 12 | B.1.1.7 | 0.000011 |
S | 255 | S255F | tCt | tTt | 11 | 11 | AY.117 | 0.00093 |
S | 255 | S255F | tCt | tTt | 11 | 11 | B.1.438.1 | 0.00118 |
S | 255 | S255F | tCt | tTt | 10 | 10 | AY.4.2 | 0.000217 |
S | 255 | S255F | tCt | tTt | 10 | 10 | B.1.1.28 | 0.003112 |
S | 255 | S255F | tCt | tTt | 10 | 10 | B.1.177.7 | 0.001649 |
S | 255 | S255S | tcT | tcC | 8 | 10 | B.1.617.2 | 0.00003 |
S | 255 | S255S | tcT | tcG | 2 | 10 | B.1.617.2 | 0.000008 |
S | 255 | S255F | tCt | tTt | 10 | 10 | C.36 | 0.009107 |
S | 255 | S255F | tCt | tTt | 9 | 9 | AY.119 | 0.000318 |
S | 255 | S255T | Tct | Act | 9 | 9 | AY.25 | 0.000054 |
S | 255 | S255S | tcT | tcC | 8 | 9 | AY.75 | 0.000448 |
S | 255 | S255S | tcT | tcA | 1 | 9 | AY.75 | 0.000056 |
S | 255 | S255F | tCt | tTt | 9 | 9 | B.1.221 | 0.000639 |
S | 255 | S255F | tCt | tTt | 9 | 9 | B.1.617.1 | 0.001161 |
S | 255 | S255del | TCT | --- | 9 | 9 | P.1 | 0.000142 |
S | 255 | S255F | tCt | tTt | 9 | 9 | P.1.10 | 0.002425 |
S | 255 | S255F | tCt | tTt | 8 | 8 | AY.116 | 0.002294 |
S | 255 | S255F | tCt | tTt | 8 | 8 | AY.27 | 0.000518 |
S | 255 | S255F | tCt | tTt | 8 | 8 | AY.39.1 | 0.000317 |
S | 255 | S255S | tcT | tcC | 4 | 8 | AY.4 | 0.000006 |
S | 255 | S255S | tcT | tcG | 2 | 8 | AY.4 | 0.000003 |
S | 255 | S255S | tcT | tcA | 2 | 8 | AY.4 | 0.000003 |
S | 255 | S255F | tCt | tTt | 8 | 8 | AY.46.6 | 0.000578 |
S | 255 | S255F | tCt | tTt | 8 | 8 | AY.9.2 | 0.000294 |
S | 255 | S255F | tCt | tTt | 8 | 8 | B.1.177.44 | 0.004152 |
S | 255 | S255S | tcT | tcC | 5 | 8 | B.1.2 | 0.000044 |
S | 255 | S255S | tcT | tcG | 3 | 8 | B.1.2 | 0.000026 |
S | 255 | S255F | tCt | tTt | 8 | 8 | B.1.427 | 0.000404 |
S | 255 | S255C | tCt | tGt | 7 | 7 | All | 0.000001 |
S | 255 | S255F | tCt | tTt | 7 | 7 | AY.113 | 0.000997 |
S | 255 | S255F | tCt | tTt | 7 | 7 | AY.118 | 0.000439 |
S | 255 | S255F | tCt | tTt | 7 | 7 | AY.34.1 | 0.00357 |
S | 255 | S255F | tCt | tTt | 7 | 7 | AY.36 | 0.001037 |
S | 255 | S255Y | tCt | tAt | 7 | 7 | AY.43 | 0.000031 |
S | 255 | S255F | tCt | tTt | 7 | 7 | AY.62 | 0.00305 |
S | 255 | S255P | Tct | Cct | 7 | 7 | B.1 | 0.000064 |
S | 255 | S255S | tcT | tcC | 7 | 7 | B.1.1 | 0.000127 |
S | 255 | S255F | tCt | tTt | 7 | 7 | B.1.1.222 | 0.001428 |
S | 255 | S255F | tCt | tTt | 7 | 7 | B.1.400 | 0.003003 |
S | 255 | S255F | tCt | tTt | 7 | 7 | B.1.433 | 0.022364 |
S | 255 | S255F | tCt | tTt | 7 | 7 | P.1.14 | 0.000335 |
S | 255 | S255Y | tCt | tAt | 6 | 6 | AY.4 | 0.000009 |
S | 255 | S255F | tCt | tTt | 6 | 6 | AY.4.3 | 0.005051 |
S | 255 | S255F | tCt | tTt | 6 | 6 | AY.4.5 | 0.000645 |
S | 255 | S255del | TCT | --- | 6 | 6 | AY.43 | 0.000027 |
S | 255 | S255F | tCt | tTt | 6 | 6 | AY.51 | 0.005455 |
S | 255 | S255F | tCt | tTt | 6 | 6 | AY.98 | 0.000474 |
S | 255 | S255F | tCt | tTt | 6 | 6 | AY.98.1 | 0.000291 |
S | 255 | S255S | tcT | tcG | 6 | 6 | B.1.1.33 | 0.002525 |
S | 255 | S255Y | tCt | tAt | 6 | 6 | B.1.110.3 | 0.00431 |
S | 255 | S255S | tcT | tcC | 6 | 6 | B.1.177 | 0.000079 |
S | 255 | S255F | tCt | tTt | 6 | 6 | B.1.177.73 | 0.003398 |
S | 255 | S255del | TCT | --- | 6 | 6 | B.1.525 | 0.000679 |
S | 255 | S255del | TCT | --- | 6 | 6 | B.1.617.2 | 0.000023 |
S | 255 | S255F | tCt | tTt | 6 | 6 | B.1.619 | 0.005226 |
S | 255 | S255del | TCT | --- | 6 | 6 | B.1.621 | 0.000531 |
S | 255 | S255F | tCt | tTt | 6 | 6 | B.1.637 | 0.000438 |
S | 255 | S255F | tCt | tTt | 6 | 6 | D.2 | 0.00045 |
S | 255 | S255del | TCT | --- | 6 | 6 | P.1.15 | 0.001394 |
S | 255 | S255F | tCt | tTt | 5 | 5 | A | 0.001935 |
S | 255 | S255Y | tCt | tAt | 5 | 5 | AY.20 | 0.000194 |
S | 255 | S255Y | tCt | tAt | 5 | 5 | AY.25 | 0.00003 |
S | 255 | S255del | TCT | --- | 5 | 5 | AY.25 | 0.00003 |
S | 255 | S255S | tcT | tcC | 4 | 5 | AY.26 | 0.000113 |
S | 255 | S255S | tcT | tcG | 1 | 5 | AY.26 | 0.000028 |
S | 255 | S255S | tcT | tcA | 4 | 5 | AY.3 | 0.00004 |
S | 255 | S255S | tcT | tcG | 1 | 5 | AY.3 | 0.00001 |
S | 255 | S255F | tCt | tTt | 5 | 5 | AY.4.2.1 | 0.000745 |
S | 255 | S255P | Tct | Cct | 5 | 5 | AY.47 | 0.000156 |
S | 255 | S255F | tCt | tTt | 5 | 5 | AY.7.2 | 0.002796 |
S | 255 | S255F | tCt | tTt | 5 | 5 | B | 0.000639 |
S | 255 | S255del | TCT | --- | 5 | 5 | B.1 | 0.000046 |
S | 255 | S255Y | tCt | tAt | 5 | 5 | B.1.1.412 | 0.038168 |
S | 255 | S255F | tCt | tTt | 5 | 5 | B.1.160.16 | 0.004647 |
S | 255 | S255F | tCt | tTt | 5 | 5 | B.1.177.10 | 0.00439 |
S | 255 | S255F | tCt | tTt | 5 | 5 | B.1.369 | 0.001426 |
S | 255 | S255F | tCt | tTt | 5 | 5 | B.1.525 | 0.000566 |
S | 255 | S255F | tCt | tTt | 5 | 5 | B.1.620 | 0.00473 |
S | 255 | S255P | Tct | Cct | 5 | 5 | B.1.637 | 0.000365 |
S | 255 | S255F | tCt | tTt | 5 | 5 | P.1.2 | 0.00578 |
S | 255 | S255F | tCt | tTt | 5 | 5 | W.1 | 0.043478 |
S | 255 | S255F | tCt | tTt | 4 | 4 | A.2.5 | 0.001996 |
S | 255 | S255S | tcT | tcC | 4 | 4 | A.28 | 0.010582 |
S | 255 | S255S | tcT | tcG | 4 | 4 | AY.119 | 0.000141 |
S | 255 | S255del | TCT | --- | 4 | 4 | AY.29 | 0.000063 |
S | 255 | S255F | tCt | tTt | 4 | 4 | AY.67 | 0.001857 |
S | 255 | S255F | tCt | tTt | 4 | 4 | AY.75 | 0.000224 |
S | 255 | S255P | Tct | Cct | 4 | 4 | B.1.1.279 | 0.004484 |
S | 255 | S255F | tCt | tTt | 4 | 4 | B.1.1.372 | 0.002755 |
S | 255 | S255F | tCt | tTt | 4 | 4 | B.1.177.81 | 0.000757 |
S | 255 | S255del | TCT | --- | 4 | 4 | B.1.351.2 | 0.00121 |
S | 255 | S255F | tCt | tTt | 4 | 4 | B.1.36 | 0.000584 |
S | 255 | S255F | tCt | tTt | 4 | 4 | B.1.36.35 | 0.010417 |
S | 255 | S255F | tCt | tTt | 4 | 4 | B.1.596 | 0.000349 |
S | 255 | S255Y | tCt | tAt | 4 | 4 | B.1.617.2 | 0.000015 |
S | 255 | S255F | tCt | tTt | 4 | 4 | C.26 | 0.029412 |
S | 255 | S255F | tCt | tTt | 3 | 3 | AY.10 | 0.00159 |
S | 255 | S255Y | tCt | tAt | 3 | 3 | AY.103 | 0.000019 |
S | 255 | S255F | tCt | tTt | 3 | 3 | AY.116.1 | 0.000934 |
S | 255 | S255F | tCt | tTt | 3 | 3 | AY.14 | 0.000264 |
S | 255 | S255S | tcT | tcC | 3 | 3 | AY.23.1 | 0.001252 |
S | 255 | S255F | tCt | tTt | 3 | 3 | AY.33 | 0.0002 |
S | 255 | S255P | Tct | Cct | 3 | 3 | AY.43 | 0.000013 |
S | 255 | S255S | tcT | tcC | 2 | 3 | AY.43 | 0.000009 |
S | 255 | S255S | tcT | tcA | 1 | 3 | AY.43 | 0.000004 |
S | 255 | S255F | tCt | tTt | 3 | 3 | AY.45 | 0.000365 |
S | 255 | S255F | tCt | tTt | 3 | 3 | AY.47 | 0.000093 |
S | 255 | S255F | tCt | tTt | 3 | 3 | AY.5.3 | 0.001012 |
S | 255 | S255F | tCt | tTt | 3 | 3 | AY.59 | 0.001589 |
S | 255 | S255F | tCt | tTt | 3 | 3 | AY.61 | 0.000314 |
S | 255 | S255F | tCt | tTt | 3 | 3 | AY.64 | 0.001786 |
S | 255 | S255F | tCt | tTt | 3 | 3 | AY.69 | 0.00056 |
S | 255 | S255F | tCt | tTt | 3 | 3 | AY.9 | 0.000203 |
S | 255 | S255Y | tCt | tAt | 3 | 3 | B.1 | 0.000027 |
S | 255 | S255C | tCt | tGt | 3 | 3 | B.1 | 0.000027 |
S | 255 | S255S | tcT | tcG | 3 | 3 | B.1.1.174 | 0.010135 |
S | 255 | S255del | TCT | --- | 3 | 3 | B.1.1.207 | 0.003546 |
S | 255 | S255F | tCt | tTt | 3 | 3 | B.1.1.348 | 0.002389 |
S | 255 | S255F | tCt | tTt | 3 | 3 | B.1.1.53 | 0.041096 |
S | 255 | S255A | Tct | Gct | 3 | 3 | B.1.1.7 | 0.000003 |
S | 255 | S255C | tCt | tGt | 3 | 3 | B.1.1.7 | 0.000003 |
S | 255 | S255A | Tct | Gct | 3 | 3 | B.1.2 | 0.000026 |
S | 255 | S255F | tCt | tTt | 3 | 3 | B.1.214.2 | 0.001799 |
S | 255 | S255F | tCt | tTt | 3 | 3 | B.1.416 | 0.003807 |
S | 255 | S255F | tCt | tTt | 3 | 3 | B.1.438 | 0.019608 |
S | 255 | S255S | tcT | tcC | 3 | 3 | B.1.466.2 | 0.001174 |
S | 255 | S255F | tCt | tTt | 3 | 3 | B.1.468 | 0.017143 |
S | 255 | S255P | Tct | Cct | 3 | 3 | B.1.526 | 0.000071 |
S | 255 | S255A | Tct | Gct | 3 | 3 | B.1.575 | 0.00091 |
S | 255 | S255P | Tct | Cct | 3 | 3 | B.1.617.2 | 0.000011 |
S | 255 | S255F | tCt | tTt | 3 | 3 | B.52 | 0.030303 |
S | 255 | S255F | tCt | tTt | 3 | 3 | P.2 | 0.00056 |
S | 255 | S255F | tCt | tTt | 3 | 3 | W.4 | 0.004054 |
S | 255 | S255P | TcT | CcC | 2 | 2 | 0.111111 | |
S | 255 | S255F | tCt | tTt | 2 | 2 | A.2.5.3 | 0.020619 |
S | 255 | S255F | tCt | tTt | 2 | 2 | AQ.1 | 0.142857 |
S | 255 | S255del | TCT | --- | 2 | 2 | AY.102 | 0.000053 |
S | 255 | S255Y | tCt | tAt | 2 | 2 | AY.102 | 0.000053 |
S | 255 | S255F | tCt | tTt | 2 | 2 | AY.114 | 0.000462 |
S | 255 | S255F | tCt | tTt | 2 | 2 | AY.13 | 0.000322 |
S | 255 | S255F | tCt | tTt | 2 | 2 | AY.16.1 | 0.00094 |
S | 255 | S255S | tcT | tcC | 2 | 2 | AY.23 | 0.000139 |
S | 255 | S255S | tcT | tcC | 1 | 2 | AY.25 | 0.000006 |
S | 255 | S255S | tcT | tcG | 1 | 2 | AY.25 | 0.000006 |
S | 255 | S255P | Tct | Cct | 2 | 2 | AY.26 | 0.000057 |
S | 255 | S255F | tCt | tTt | 2 | 2 | AY.30 | 0.000791 |
S | 255 | S255S | tcT | tcC | 2 | 2 | AY.33 | 0.000134 |
S | 255 | S255S | tcT | tcG | 2 | 2 | AY.36 | 0.000296 |
S | 255 | S255del | TCT | --- | 2 | 2 | AY.4 | 0.000003 |
S | 255 | S255P | Tct | Cct | 2 | 2 | AY.4 | 0.000003 |
S | 255 | S255del | TCT | --- | 2 | 2 | AY.4.5 | 0.000215 |
S | 255 | S255F | tCt | tTt | 2 | 2 | AY.40 | 0.001929 |
S | 255 | S255Y | tCt | tAt | 2 | 2 | AY.44 | 0.000012 |
S | 255 | S255F | tCt | tTt | 2 | 2 | AY.46.4 | 0.000329 |
S | 255 | S255F | tCt | tTt | 2 | 2 | AY.53 | 0.000575 |
S | 255 | S255F | tCt | tTt | 2 | 2 | AY.68 | 0.000547 |
S | 255 | S255P | Tct | Cct | 2 | 2 | AY.73 | 0.001331 |
S | 255 | S255F | tCt | tTt | 2 | 2 | AY.75.1 | 0.000361 |
S | 255 | S255F | tCt | tTt | 2 | 2 | AY.76 | 0.009662 |
S | 255 | S255F | tCt | tTt | 2 | 2 | AY.90 | 0.001369 |
S | 255 | S255F | tCt | tTt | 2 | 2 | B.1.1.169 | 0.036364 |
S | 255 | S255F | tCt | tTt | 2 | 2 | B.1.1.176 | 0.000879 |
S | 255 | S255S | tcT | tcG | 2 | 2 | B.1.1.214 | 0.000111 |
S | 255 | S255F | tCt | tTt | 2 | 2 | B.1.1.305 | 0.007722 |
S | 255 | S255S | tcT | tcC | 2 | 2 | B.1.1.519 | 0.000079 |
S | 255 | S255L | tCT | tTA | 1 | 2 | B.1.1.7 | 0.000001 |
S | 255 | S255L | tCT | tTG | 1 | 2 | B.1.1.7 | 0.000001 |
S | 255 | S255F | tCt | tTt | 2 | 2 | B.1.1.71 | 0.012121 |
S | 255 | S255P | Tct | Cct | 2 | 2 | B.1.160 | 0.000062 |
S | 255 | S255P | Tct | Cct | 2 | 2 | B.1.170 | 0.008621 |
S | 255 | S255del | TCT | --- | 2 | 2 | B.1.177 | 0.000026 |
S | 255 | S255F | tCt | tTt | 2 | 2 | B.1.177.21 | 0.000153 |
S | 255 | S255F | tCt | tTt | 2 | 2 | B.1.177.45 | 0.000762 |
S | 255 | S255F | tCt | tTt | 2 | 2 | B.1.177.54 | 0.001213 |
S | 255 | S255F | tCt | tTt | 2 | 2 | B.1.177.86 | 0.000367 |
S | 255 | S255Y | tCt | tAt | 2 | 2 | B.1.2 | 0.000018 |
S | 255 | S255F | tCt | tTt | 2 | 2 | B.1.240 | 0.000431 |
S | 255 | S255F | tCt | tTt | 2 | 2 | B.1.241 | 0.001623 |
S | 255 | S255F | tCt | tTt | 2 | 2 | B.1.250 | 0.028986 |
S | 255 | S255F | tCt | tTt | 2 | 2 | B.1.324 | 0.00321 |
S | 255 | S255F | tCt | tTt | 2 | 2 | B.1.36.22 | 0.002415 |
S | 255 | S255F | tCt | tTt | 2 | 2 | B.1.391 | 0.002255 |
S | 255 | S255F | tCt | tTt | 2 | 2 | B.1.432 | 0.022472 |
S | 255 | S255F | tCt | tTt | 2 | 2 | B.1.470 | 0.002809 |
S | 255 | S255S | tcT | tcA | 2 | 2 | B.1.470 | 0.002809 |
S | 255 | S255F | tCt | tTt | 2 | 2 | B.1.582 | 0.000981 |
S | 255 | S255P | Tct | Cct | 2 | 2 | B.1.621 | 0.000177 |
S | 255 | S255F | tCt | tTt | 2 | 2 | B.1.621.1 | 0.001012 |
S | 255 | S255del | TCT | --- | 2 | 2 | B.1.630 | 0.010471 |
S | 255 | S255S | tcT | tcA | 1 | 2 | D.2 | 0.000075 |
S | 255 | S255S | tcT | tcG | 1 | 2 | D.2 | 0.000075 |
S | 255 | S255P | Tct | Cct | 2 | 2 | P.1 | 0.000032 |
S | 255 | S255F | tCt | tTt | 2 | 2 | P.1.12 | 0.000968 |
S | 255 | S255S | tcT | tcC | 1 | 2 | P.1.14 | 0.000048 |
S | 255 | S255S | tcT | tcG | 1 | 2 | P.1.14 | 0.000048 |
S | 255 | S255F | tCt | tTt | 2 | 2 | P.1.15 | 0.000465 |
S | 255 | S255T | Tct | Act | 2 | 2 | P.2 | 0.000373 |
S | 255 | S255F | tCt | tTt | 2 | 2 | Q.8 | 0.00033 |
S | 255 | S255del | TCT | --- | 1 | 1 | A | 0.000387 |
S | 255 | S255F | tCt | tTt | 1 | 1 | A.1 | 0.000282 |
S | 255 | S255F | tCt | tTt | 1 | 1 | A.2 | 0.000662 |
S | 255 | S255del | TCT | --- | 1 | 1 | A.2.5 | 0.000499 |
S | 255 | S255F | tCt | tTt | 1 | 1 | A.23.1 | 0.000704 |
S | 255 | S255F | tCt | tTt | 1 | 1 | AE.8 | 0.000489 |
S | 255 | S255W | tCT | tGG | 1 | 1 | All | 0 |
S | 255 | S255D | TCt | GAt | 1 | 1 | All | 0 |
S | 255 | S255I | TCt | ATt | 1 | 1 | All | 0 |
S | 255 | S255K | TCT | AAG | 1 | 1 | All | 0 |
S | 255 | S255V | TCt | GTt | 1 | 1 | All | 0 |
S | 255 | S255del | TCT | --- | 1 | 1 | AV.1 | 0.005051 |
S | 255 | S255F | tCt | tTt | 1 | 1 | AY.1 | 0.000396 |
S | 255 | S255S | tcT | tcC | 1 | 1 | AY.100 | 0.000046 |
S | 255 | S255del | TCT | --- | 1 | 1 | AY.101 | 0.00049 |
S | 255 | S255P | Tct | Cct | 1 | 1 | AY.102 | 0.000027 |
S | 255 | S255P | Tct | Cct | 1 | 1 | AY.103 | 0.000006 |
S | 255 | S255F | tCt | tTt | 1 | 1 | AY.105 | 0.000643 |
S | 255 | S255F | tCt | tTt | 1 | 1 | AY.110 | 0.000113 |
S | 255 | S255del | TCT | --- | 1 | 1 | AY.117 | 0.000085 |
S | 255 | S255Y | tCt | tAt | 1 | 1 | AY.117 | 0.000085 |
S | 255 | S255S | tcT | tcG | 1 | 1 | AY.117 | 0.000085 |
S | 255 | S255del | TCT | --- | 1 | 1 | AY.118 | 0.000063 |
S | 255 | S255Y | tCt | tAt | 1 | 1 | AY.118 | 0.000063 |
S | 255 | S255Y | tCt | tAt | 1 | 1 | AY.120 | 0.000037 |
S | 255 | S255Y | tCt | tAt | 1 | 1 | AY.121 | 0.000135 |
S | 255 | S255F | tCt | tTt | 1 | 1 | AY.2 | 0.000356 |
S | 255 | S255S | tcT | tcG | 1 | 1 | AY.20 | 0.000039 |
S | 255 | S255F | tCt | tTt | 1 | 1 | AY.23.1 | 0.000417 |
S | 255 | S255Y | tCt | tAt | 1 | 1 | AY.26 | 0.000028 |
S | 255 | S255F | tCt | tTt | 1 | 1 | AY.29.1 | 0.000221 |
S | 255 | S255del | TCT | --- | 1 | 1 | AY.3 | 0.00001 |
S | 255 | S255del | TCT | --- | 1 | 1 | AY.33 | 0.000067 |
S | 255 | S255A | Tct | Gct | 1 | 1 | AY.34.1 | 0.00051 |
S | 255 | S255Y | tCt | tAt | 1 | 1 | AY.39 | 0.000025 |
S | 255 | S255F | tCt | tTt | 1 | 1 | AY.39.1.1 | 0.000725 |
S | 255 | S255T | Tct | Act | 1 | 1 | AY.4 | 0.000002 |
S | 255 | S255Y | tCt | tAt | 1 | 1 | AY.4.3 | 0.000842 |
S | 255 | S255F | tCt | tTt | 1 | 1 | AY.41 | 0.000294 |
S | 255 | S255A | Tct | Gct | 1 | 1 | AY.43 | 0.000004 |
S | 255 | S255P | Tct | Cct | 1 | 1 | AY.44 | 0.000006 |
S | 255 | S255S | tcT | tcC | 1 | 1 | AY.44 | 0.000006 |
S | 255 | S255del | TCT | --- | 1 | 1 | AY.44 | 0.000006 |
S | 255 | S255S | tcT | tcG | 1 | 1 | AY.46.4 | 0.000165 |
S | 255 | S255F | tCt | tTt | 1 | 1 | AY.46.5 | 0.000198 |
S | 255 | S255del | TCT | --- | 1 | 1 | AY.47 | 0.000031 |
S | 255 | S255S | tcT | tcC | 1 | 1 | AY.5 | 0.000021 |
S | 255 | S255P | Tct | Cct | 1 | 1 | AY.5 | 0.000021 |
S | 255 | S255F | tCt | tTt | 1 | 1 | AY.57 | 0.000656 |
S | 255 | S255del | TCT | --- | 1 | 1 | AY.6 | 0.000041 |
S | 255 | S255P | Tct | Cct | 1 | 1 | AY.61 | 0.000105 |
S | 255 | S255del | TCT | --- | 1 | 1 | AY.65 | 0.000533 |
S | 255 | S255del | TCT | --- | 1 | 1 | AY.67 | 0.000464 |
S | 255 | S255P | Tct | Cct | 1 | 1 | AY.7.1 | 0.000113 |
S | 255 | S255F | tCt | tTt | 1 | 1 | AY.70 | 0.000209 |
S | 255 | S255F | tCt | tTt | 1 | 1 | AY.74 | 0.000116 |
S | 255 | S255P | Tct | Cct | 1 | 1 | AY.75 | 0.000056 |
S | 255 | S255F | tCt | tTt | 1 | 1 | AY.77 | 0.001127 |
S | 255 | S255F | tCt | tTt | 1 | 1 | AY.83 | 0.001724 |
S | 255 | S255F | tCt | tTt | 1 | 1 | AY.85 | 0.000427 |
S | 255 | S255F | tCt | tTt | 1 | 1 | AY.87 | 0.000833 |
S | 255 | S255A | Tct | Gct | 1 | 1 | AY.9 | 0.000068 |
S | 255 | S255del | TCT | --- | 1 | 1 | AY.9.2 | 0.000037 |
S | 255 | S255S | tcT | tcC | 1 | 1 | AY.9.2.1 | 0.001976 |
S | 255 | S255F | tCt | tTt | 1 | 1 | AY.91 | 0.00073 |
S | 255 | S255F | tCt | tTt | 1 | 1 | AY.92 | 0.000287 |
S | 255 | S255del | TCT | --- | 1 | 1 | AY.95 | 0.000761 |
S | 255 | S255F | tCt | tTt | 1 | 1 | AY.95 | 0.000761 |
S | 255 | S255L | tCT | tTG | 1 | 1 | B.1 | 0.000009 |
S | 255 | S255del | TCT | --- | 1 | 1 | B.1.1 | 0.000018 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.1.1 | 0.000327 |
S | 255 | S255P | Tct | Cct | 1 | 1 | B.1.1.10 | 0.001115 |
S | 255 | S255del | TCT | --- | 1 | 1 | B.1.1.159 | 0.004673 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.1.161 | 0.003534 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.1.164 | 0.005155 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.1.170 | 0.001247 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.1.216 | 0.00089 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.1.220 | 0.001859 |
S | 255 | S255S | tcT | tcC | 1 | 1 | B.1.1.25 | 0.000569 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.1.25 | 0.000569 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.1.280 | 0.003086 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.1.284 | 0.000107 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.1.301 | 0.001179 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.1.311 | 0.000358 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.1.317 | 0.000412 |
S | 255 | S255P | Tct | Cct | 1 | 1 | B.1.1.318 | 0.000302 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.1.329 | 0.003846 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.1.337 | 0.003597 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.1.37 | 0.000193 |
S | 255 | S255A | Tct | Gct | 1 | 1 | B.1.1.385 | 0.004464 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.1.41 | 0.006329 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.1.411 | 0.014706 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.1.416 | 0.000905 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.1.432 | 0.001266 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.1.434 | 0.000349 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.1.480 | 0.025 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.1.507 | 0.008696 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.1.523 | 0.001563 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.1.525 | 0.005464 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.1.58 | 0.005376 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.1.63 | 0.000386 |
S | 255 | S255W | tCT | tGG | 1 | 1 | B.1.1.7 | 0.000001 |
S | 255 | S255I | TCt | ATt | 1 | 1 | B.1.1.7 | 0.000001 |
S | 255 | S255D | TCt | GAt | 1 | 1 | B.1.1.7 | 0.000001 |
S | 255 | S255K | TCT | AAG | 1 | 1 | B.1.1.7 | 0.000001 |
S | 255 | S255V | TCt | GTt | 1 | 1 | B.1.1.7 | 0.000001 |
S | 255 | S255T | Tct | Act | 1 | 1 | B.1.1.7 | 0.000001 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.110.3 | 0.000718 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.115 | 0.021739 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.126 | 0.001276 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.140 | 0.018868 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.143 | 0.021277 |
S | 255 | S255Y | tCt | tAt | 1 | 1 | B.1.160 | 0.000031 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.160.14 | 0.002119 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.160.28 | 0.002924 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.160.33 | 0.004425 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.160.7 | 0.002079 |
S | 255 | S255Y | tCt | tAt | 1 | 1 | B.1.177 | 0.000013 |
S | 255 | S255P | Tct | Cct | 1 | 1 | B.1.177 | 0.000013 |
S | 255 | S255del | TCT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.177.17 | 0.000821 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.177.23 | 0.003236 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.177.24 | 0.001295 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.177.35 | 0.000691 |
S | 255 | S255S | tcT | tcC | 1 | 1 | B.1.177.44 | 0.000519 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.177.57 | 0.000281 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.177.6 | 0.000977 |
S | 255 | S255del | TCT | --- | 1 | 1 | B.1.177.69 | 0.001484 |
S | 255 | S255P | Tct | Cct | 1 | 1 | B.1.177.7 | 0.000165 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.177.75 | 0.001041 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.177.82 | 0.000477 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.189 | 0.004292 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.192 | 0.009259 |
S | 255 | S255del | TCT | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 255 | S255C | tCt | tGt | 1 | 1 | B.1.2 | 0.000009 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.206 | 0.000816 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.210 | 0.002132 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.214 | 0.003663 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.22.1 | 0.03125 |
S | 255 | S255S | tcT | tcA | 1 | 1 | B.1.221 | 0.000071 |
S | 255 | S255del | TCT | --- | 1 | 1 | B.1.221 | 0.000071 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.227 | 0.047619 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.237 | 0.004975 |
S | 255 | S255S | tcT | tcC | 1 | 1 | B.1.243 | 0.00007 |
S | 255 | S255S | tcT | tcC | 1 | 1 | B.1.258 | 0.000067 |
S | 255 | S255P | Tct | Cct | 1 | 1 | B.1.258 | 0.000067 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.258.17 | 0.000104 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.281 | 0.021739 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.292 | 0.058824 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.293 | 0.0125 |
S | 255 | S255S | tcT | tcC | 1 | 1 | B.1.311 | 0.000275 |
S | 255 | S255del | TCT | --- | 1 | 1 | B.1.351 | 0.00003 |
S | 255 | S255P | Tct | Cct | 1 | 1 | B.1.351 | 0.00003 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.351.1 | 0.038462 |
S | 255 | S255P | Tct | Cct | 1 | 1 | B.1.36 | 0.000146 |
S | 255 | S255S | tcT | tcC | 1 | 1 | B.1.36.29 | 0.000517 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.36.7 | 0.004 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.36.8 | 0.001 |
S | 255 | S255S | tcT | tcA | 1 | 1 | B.1.367 | 0.000792 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.367 | 0.000792 |
S | 255 | S255S | tcT | tcG | 1 | 1 | B.1.369 | 0.000285 |
S | 255 | S255A | Tct | Gct | 1 | 1 | B.1.380 | 0.006623 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.396 | 0.000706 |
S | 255 | S255S | tcT | tcC | 1 | 1 | B.1.400 | 0.000429 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.404 | 0.001302 |
S | 255 | S255S | tcT | tcA | 1 | 1 | B.1.427 | 0.00005 |
S | 255 | S255P | Tct | Cct | 1 | 1 | B.1.427 | 0.00005 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.428.2 | 0.033333 |
S | 255 | S255del | TCT | --- | 1 | 1 | B.1.429 | 0.000024 |
S | 255 | S255Y | tCt | tAt | 1 | 1 | B.1.429 | 0.000024 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.466.2 | 0.000391 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.504 | 0.03125 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.509 | 0.000866 |
S | 255 | S255Y | tCt | tAt | 1 | 1 | B.1.517 | 0.000427 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.517 | 0.000427 |
S | 255 | S255S | tcT | tcC | 1 | 1 | B.1.525 | 0.000113 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.540 | 0.009709 |
S | 255 | S255A | Tct | Gct | 1 | 1 | B.1.551 | 0.00129 |
S | 255 | S255del | TCT | --- | 1 | 1 | B.1.561 | 0.000397 |
S | 255 | S255S | tcT | tcC | 1 | 1 | B.1.575 | 0.000303 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.576 | 0.000907 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.577 | 0.000687 |
S | 255 | S255Y | tCt | tAt | 1 | 1 | B.1.588 | 0.00091 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.588 | 0.00091 |
S | 255 | S255T | Tct | Act | 1 | 1 | B.1.590 | 0.004545 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.595 | 0.000261 |
S | 255 | S255Y | tCt | tAt | 1 | 1 | B.1.596 | 0.000087 |
S | 255 | S255del | TCT | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.8 | 0.001972 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.1.9 | 0.006173 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.3 | 0.000831 |
S | 255 | S255del | TCT | --- | 1 | 1 | B.55 | 0.00295 |
S | 255 | S255Y | tCt | tAt | 1 | 1 | B.6.6 | 0.000889 |
S | 255 | S255S | tcT | tcG | 1 | 1 | B.6.8 | 0.008264 |
S | 255 | S255F | tCt | tTt | 1 | 1 | B.61 | 0.005747 |
S | 255 | S255F | tCt | tTt | 1 | 1 | C.1 | 0.002392 |
S | 255 | S255F | tCt | tTt | 1 | 1 | C.33 | 0.058824 |
S | 255 | S255F | tCt | tTt | 1 | 1 | C.36.3 | 0.000567 |
S | 255 | S255del | TCT | --- | 1 | 1 | C.37 | 0.000116 |
S | 255 | S255F | tCt | tTt | 1 | 1 | C.37 | 0.000116 |
S | 255 | S255F | tCt | tTt | 1 | 1 | C.5 | 0.090909 |
S | 255 | S255S | tcT | tcC | 1 | 1 | L.2 | 0.011364 |
S | 255 | S255Y | tCt | tAt | 1 | 1 | N.1 | 0.016949 |
S | 255 | S255F | tCt | tTt | 1 | 1 | N.5 | 0.001767 |
S | 255 | S255S | tcT | tcC | 1 | 1 | P.1 | 0.000016 |
S | 255 | S255Y | tCt | tAt | 1 | 1 | P.1 | 0.000016 |
S | 255 | S255S | tcT | tcC | 1 | 1 | P.1.1 | 0.000318 |
S | 255 | S255del | TCT | --- | 1 | 1 | P.1.1 | 0.000318 |
S | 255 | S255F | tCt | tTt | 1 | 1 | P.1.7 | 0.000319 |
S | 255 | S255P | Tct | Cct | 1 | 1 | P.2 | 0.000187 |
S | 255 | S255S | tcT | tcG | 1 | 1 | P.2 | 0.000187 |
S | 255 | S255del | TCT | --- | 1 | 1 | Q.4 | 0.000455 |
S | 255 | S255F | tCt | tTt | 1 | 1 | Q.4 | 0.000455 |
S | 255 | S255Y | tCt | tAt | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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