CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 253 & Codon = gGt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S253D253GnonsyngAtgGt4692346923122319-22321

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S253D253GgAtgGt4692346923All0.008975
S253D253GgAtgGt4183341833B.1.5260.983265
S253D253GgAtgGt10031003AY.40.001561
S253D253GgAtgGt988988B.1.4260.996973
S253D253GgAtgGt604604B.1.1.70.000541
S253D253GgAtgGt192192B.1.617.20.000723
S253D253GgAtgGt189189B.10.001731
S253D253GgAtgGt179179AY.430.000793
S253D253GgAtgGt146146B.1.3130.960526
S253D253GgAtgGt127127AY.750.007115
S253D253GgAtgGt117117B.1.10.002122
S253D253GgAtgGt114114AY.440.000694
S253D253GgAtgGt104104B.1.20.000916
S253D253GgAtgGt9494B.1.177.40.01984
S253D253GgAtgGt8686AY.470.002675
S253D253GgAtgGt7272B.1.5500.986301
S253D253GgAtgGt7171AY.330.004741
S253D253GgAtgGt6565AY.250.000391
S253D253GgAtgGt6161B.1.6230.032725
S253D253GgAtgGt4848AY.290.000757
S253D253GgAtgGt4343B.1.5300.307143
S253D253GgAtgGt3737C.191
S253D253GgAtgGt3434B.1.30.089005
S253D253GgAtgGt3232AY.1030.000199
S253D253GgAtgGt3232B.1.1.5190.001271
S253D253GgAtgGt2323AY.98.10.001114
S253D253GgAtgGt2222AY.450.002677
S253D253GgAtgGt2121Q.40.00955
S253D253GgAtgGt2020P.10.000315
S253D253GgAtgGt1818AY.540.001716
S253D253GgAtgGt1818B.1.1.3120.034417
S253D253GgAtgGt1818B.1.177.520.031634
S253D253GgAtgGt1616AY.1020.000424
S253D253GgAtgGt1616B.1.1770.000211
S253D253GgAtgGt1515AY.390.000371
S253D253GgAtgGt1515B.1.2430.001044
S253D253GgAtgGt1414AY.1000.000644
S253D253GgAtgGt1414AY.30.000139
S253D253GgAtgGt1414B.1.1650.166667
S253D253GgAtgGt1313B.1.2210.000923
S253D253GgAtgGt1111B.1.4270.000555
S253D253GgAtgGt1010B.1.2580.000665
S253D253GgAtgGt99AY.200.00035
S253D253GgAtgGt99B.1.1600.000281
S253D253GgAtgGt99B.1.4290.000212
S253D253GgAtgGt99B.1.4990.009454
S253D253GgAtgGt99B.1.5960.000784
S253D253GgAtgGt88B.1.1.5070.069565
S253D253GgAtgGt88B.1.36.290.004139
S253D253GgAtgGt77AY.1190.000247
S253D253GgAtgGt77B.1.1.2140.000388
S253D253GgAtgGt77B.1.177.730.003964
S253D253GgAtgGt77B.1.2340.000924
S253D253GgAtgGt66AY.1060.002009
S253D253GgAtgGt66B.1.1.4160.00543
S253D253GgAtgGt66B.1.6210.000531
S253D253GgAtgGt66Q.10.000758
S253D253GgAtgGt55AY.1010.002452
S253D253GgAtgGt55AY.140.00044
S253D253GgAtgGt55AY.260.000142
S253D253GgAtgGt55AY.60.000206
S253D253GgAtgGt55AY.90.000338
S253D253GgAtgGt55B.1.1.330.002104
S253D253GgAtgGt55B.1.5750.001517
S253D253GgAtgGt44AY.1170.000338
S253D253GgAtgGt44AY.1200.000149
S253D253GgAtgGt44AY.160.001519
S253D253GgAtgGt44AY.420.000161
S253D253GgAtgGt44AY.9.10.000335
S253D253GgAtgGt44AY.9.20.000147
S253D253GgAtgGt44B.1.1.3480.003185
S253D253GgAtgGt44B.1.5610.001588
S253D253GgAtgGt33AY.1140.000693
S253D253GgAtgGt33AY.1180.000188
S253D253GgAtgGt33AY.120.000948
S253D253GgAtgGt33AY.4.20.000065
S253D253GgAtgGt33AY.460.000312
S253D253GgAtgGt33AY.50.000062
S253D253GgAtgGt33AY.530.000863
S253D253GgAtgGt33AY.610.000314
S253D253GgAtgGt33AY.75.10.000541
S253D253GgAtgGt33B.1.1.10.00098
S253D253GgAtgGt33B.1.1.510.005155
S253D253GgAtgGt33B.1.2410.002435
S253D253GgAtgGt33B.1.438.10.000322
S253D253GgAtgGt33B.1.5250.000339
S253D253GgAtgGt33C.370.000348
S253D253GgAtgGt33N.50.0053
S253D253GgAtgGt33P.1.150.000697
S253D253GgAtgGt33P.1.170.000485
S253D253GgAtgGt22AY.1160.000574
S253D253GgAtgGt22AY.1210.000271
S253D253GgAtgGt22AY.320.001065
S253D253GgAtgGt22AY.340.000194
S253D253GgAtgGt22AY.360.000296
S253D253GgAtgGt22AY.39.10.000079
S253D253GgAtgGt22AY.680.000547
S253D253GgAtgGt22AY.690.000373
S253D253GgAtgGt22AY.740.000231
S253D253GgAtgGt22AY.780.003082
S253D253GgAtgGt22AY.980.000158
S253D253GgAtgGt22B0.000256
S253D253GgAtgGt22B.1.1.1610.007067
S253D253GgAtgGt22B.1.1.2200.003717
S253D253GgAtgGt22B.1.1.2220.000408
S253D253GgAtgGt22B.1.1.3170.000823
S253D253GgAtgGt22B.1.1.3180.000604
S253D253GgAtgGt22B.1.1.4290.009217
S253D253GgAtgGt22B.1.177.570.000562
S253D253GgAtgGt22B.1.258.170.000208
S253D253GgAtgGt22B.1.3110.000549
S253D253GgAtgGt22B.1.3510.000059
S253D253GgAtgGt22B.1.360.000292
S253D253GgAtgGt22B.1.3670.001585
S253D253GgAtgGt22B.1.3910.002255
S253D253GgAtgGt22B.1.466.20.000782
S253D253GgAtgGt22B.1.4970.00063
S253D253GgAtgGt22B.1.5330.019231
S253D253GgAtgGt22B.1.5640.000852
S253D253GgAtgGt22B.1.5670.006667
S253D253GgAtgGt22B.1.5760.001813
S253D253GgAtgGt22B.1.5800.00813
S253D253GgAtgGt22B.1.5820.000981
S253D253GgAtgGt22B.1.617.10.000258
S253D253GgAtgGt22D.20.00015
S253D253GgAtgGt22P.1.10.000635
S253D253GgAtgGt22P.1.100.000539
S253D253GgAtgGt22P.1.120.000968
S253D253GgAtgGt22P.1.140.000096
S253D253GgAtgGt22P.20.000373
S253D253GgAtgGt11A.2.50.000499
S253D253GgAtgGt11A.2.5.10.004808
S253D253GgAtgGt11A.2.5.30.010309
S253D253GgAtgGt11AT.10.005128
S253D253GgAtgGt11AY.100.00053
S253D253GgAtgGt11AY.1100.000113
S253D253GgAtgGt11AY.1110.000183
S253D253GgAtgGt11AY.230.00007
S253D253GgAtgGt11AY.240.000431
S253D253GgAtgGt11AY.29.10.000221
S253D253GgAtgGt11AY.300.000396
S253D253GgAtgGt11AY.46.20.000635
S253D253GgAtgGt11AY.620.000436
S253D253GgAtgGt11AY.640.000595
S253D253GgAtgGt11AY.860.00083
S253D253GgAtgGt11AY.910.00073
S253D253GgAtgGt11AY.99.10.001553
S253D253GgAtgGt11AY.99.20.000092
S253D253GgAtgGt11AZ.20.000821
S253D253GgAtgGt11B.1.1.1530.001095
S253D253GgAtgGt11B.1.1.1720.018182
S253D253GgAtgGt11B.1.1.1760.000439
S253D253GgAtgGt11B.1.1.2160.00089
S253D253GgAtgGt11B.1.1.280.000311
S253D253GgAtgGt11B.1.1.3030.002762
S253D253GgAtgGt11B.1.1.3060.000438
S253D253GgAtgGt11B.1.1.310.066667
S253D253GgAtgGt11B.1.1.3220.008772
S253D253GgAtgGt11B.1.1.340.013158
S253D253GgAtgGt11B.1.1.370.000193
S253D253GgAtgGt11B.1.1.4090.002833
S253D253GgAtgGt11B.1.1.4190.007407
S253D253GgAtgGt11B.1.1.4340.000349
S253D253GgAtgGt11B.1.1.4380.05
S253D253GgAtgGt11B.1.1.4620.008621
S253D253GgAtgGt11B.1.1.980.018519
S253D253GgAtgGt11B.1.160.150.00495
S253D253GgAtgGt11B.1.177.440.000519
S253D253GgAtgGt11B.1.2060.000816
S253D253GgAtgGt11B.1.2360.002053
S253D253GgAtgGt11B.1.2390.001221
S253D253GgAtgGt11B.1.2400.000216
S253D253GgAtgGt11B.1.2930.0125
S253D253GgAtgGt11B.1.3190.003049
S253D253GgAtgGt11B.1.3290.000608
S253D253GgAtgGt11B.1.351.20.000303
S253D253GgAtgGt11B.1.3610.001289
S253D253GgAtgGt11B.1.3750.00082
S253D253GgAtgGt11B.1.4030.003268
S253D253GgAtgGt11B.1.5170.000427
S253D253GgAtgGt11B.1.5440.006024
S253D253GgAtgGt11B.1.5680.001111
S253D253GgAtgGt11B.1.5950.000261
S253D253GgAtgGt11B.1.6200.000946
S253D253GgAtgGt11B.1.621.10.000506
S253D253GgAtgGt11B.1.6250.002353
S253D253GgAtgGt11N.30.005814
S253D253GgAtgGt11P.1.130.000898
S253D253GgAtgGt11P.1.160.000374
S253D253GgAtgGt11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.