CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 253

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S253D253GnonsyngAtgGt4692346923122319-22321
S253D253NnonsynGatAat783578250.99872422319-22321
S253D253NnonsynGaTAaC7835100.0012763222319-22321
S253D253AnonsyngAtgCt31163116122319-22321
S253D253YnonsynGatTat10751075122319-22321
S253D253DsyngaTgaC10071007122319-22321
S253D253VnonsyngAtgTt137137122319-22321
S253D253deldelGAT---9393122319-22321
S253D253EnonsyngaTgaG26250.96153822319-22321
S253D253EnonsyngaTgaA2610.038461522319-22321
S253D253SnonsynGAtAGt1515122319-22321
S253D253HnonsynGatCat1313122319-22321
S253D253del1delGat-at66122319-22321
S253D253del2delgATg--320.66666722319-22321
S253D253del2delGAt--t310.33333322319-22321
S253D253QnonsynGaTCaG11122319-22321
S253D253CnonsynGAtTGt11122319-22321
S253D253XnonsynGaTTaA11122319-22321

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S253D253GgAtgGt4692346923All0.008975
S253D253GgAtgGt4183341833B.1.5260.983265
S253D253NGatAat78257835All0.001497
S253D253NGaTAaC107835All0.000002
S253D253NGatAat72867286C.370.845636
S253D253AgAtgCt31163116All0.000596
S253D253AgAtgCt26532653AY.680.726252
S253D253YGatTat10751075All0.000206
S253D253DgaTgaC10071007All0.000193
S253D253GgAtgGt10031003AY.40.001561
S253D253GgAtgGt988988B.1.4260.996973
S253D253YGatTat646646B.1.1.70.000578
S253D253GgAtgGt604604B.1.1.70.000541
S253D253DgaTgaC489489AY.40.000761
S253D253NGatAat257257C.37.10.672775
S253D253GgAtgGt192192B.1.617.20.000723
S253D253GgAtgGt189189B.10.001731
S253D253GgAtgGt179179AY.430.000793
S253D253DgaTgaC178178B.1.617.20.00067
S253D253GgAtgGt146146B.1.3130.960526
S253D253VgAtgTt137137All0.000026
S253D253YGatTat131131A0.050697
S253D253AgAtgCt128128B.1.617.20.000482
S253D253GgAtgGt127127AY.750.007115
S253D253GgAtgGt117117B.1.10.002122
S253D253GgAtgGt114114AY.440.000694
S253D253GgAtgGt104104B.1.20.000916
S253D253GgAtgGt9494B.1.177.40.01984
S253D253delGAT---9393All0.000018
S253D253GgAtgGt8686AY.470.002675
S253D253AgAtgCt7575AY.610.007858
S253D253GgAtgGt7272B.1.5500.986301
S253D253GgAtgGt7171AY.330.004741
S253D253NGatAat7070B.1.1.70.000063
S253D253GgAtgGt6565AY.250.000391
S253D253GgAtgGt6161B.1.6230.032725
S253D253AgAtgCt6060B.1.1.70.000054
S253D253AgAtgCt5454AY.40.000084
S253D253DgaTgaC5454B.1.177.810.010223
S253D253GgAtgGt4848AY.290.000757
S253D253VgAtgTt4343B.1.20.000379
S253D253GgAtgGt4343B.1.5300.307143
S253D253GgAtgGt3737C.191
S253D253DgaTgaC3636AY.390.00089
S253D253DgaTgaC3636B.1.1.70.000032
S253D253YGatTat3636B.1.4290.000847
S253D253GgAtgGt3434B.1.30.089005
S253D253GgAtgGt3232AY.1030.000199
S253D253DgaTgaC3232AY.1030.000199
S253D253GgAtgGt3232B.1.1.5190.001271
S253D253DgaTgaC3030AY.1020.000795
S253D253EgaTgaG2526All0.000005
S253D253EgaTgaA126All0
S253D253DgaTgaC2525AY.1070.01165
S253D253YGatTat2424B.10.00022
S253D253NGatAat2424B.1.1.4320.03038
S253D253YGatTat2424B.1.617.20.00009
S253D253GgAtgGt2323AY.98.10.001114
S253D253GgAtgGt2222AY.450.002677
S253D253YGatTat2222C.36.30.012479
S253D253YGatTat2222Q.80.003628
S253D253GgAtgGt2121Q.40.00955
S253D253GgAtgGt2020P.10.000315
S253D253GgAtgGt1818AY.540.001716
S253D253GgAtgGt1818B.1.1.3120.034417
S253D253NGatAat1818B.1.1770.000237
S253D253GgAtgGt1818B.1.177.520.031634
S253D253YGatTat1717AY.40.000026
S253D253AgAtgCt1717P.10.000268
S253D253GgAtgGt1616AY.1020.000424
S253D253GgAtgGt1616B.1.1770.000211
S253D253NGatAat1616B.1.6330.666667
S253D253SGAtAGt1515All0.000003
S253D253GgAtgGt1515AY.390.000371
S253D253AgAtgCt1515AY.430.000066
S253D253delGAT---1515B.1.1.70.000013
S253D253DgaTgaC1515B.1.177.120.002275
S253D253GgAtgGt1515B.1.2430.001044
S253D253SGAtAGt1515B.1.5260.000353
S253D253NGatAat1415B.1.617.20.000053
S253D253NGaTAaC115B.1.617.20.000004
S253D253GgAtgGt1414AY.1000.000644
S253D253GgAtgGt1414AY.30.000139
S253D253YGatTat1414AY.330.000935
S253D253GgAtgGt1414B.1.1650.166667
S253D253HGatCat1313All0.000002
S253D253VgAtgTt1313AY.1090.009615
S253D253GgAtgGt1313B.1.2210.000923
S253D253NGaTAaC712AY.1030.000043
S253D253NGatAat512AY.1030.000031
S253D253AgAtgCt1212AY.440.000073
S253D253DgaTgaC1212AY.980.000948
S253D253YGatTat1111AY.250.000066
S253D253DgaTgaC1111AY.75.10.001983
S253D253AgAtgCt1111AY.75.10.001983
S253D253GgAtgGt1111B.1.4270.000555
S253D253YGatTat1010AY.1000.00046
S253D253YGatTat1010AY.440.000061
S253D253GgAtgGt1010B.1.2580.000665
S253D253GgAtgGt99AY.200.00035
S253D253VgAtgTt99AY.250.000054
S253D253NGatAat99AY.40.000014
S253D253NGatAat99AY.850.003845
S253D253GgAtgGt99B.1.1600.000281
S253D253GgAtgGt99B.1.4290.000212
S253D253GgAtgGt99B.1.4990.009454
S253D253GgAtgGt99B.1.5960.000784
S253D253NGatAat99P.1.150.002091
S253D253VgAtgTt88AY.1190.000282
S253D253DgaTgaC88AY.430.000035
S253D253NGatAat88B.10.000073
S253D253GgAtgGt88B.1.1.5070.069565
S253D253EgaTgaG88B.1.1.70.000007
S253D253VgAtgTt88B.1.1.70.000007
S253D253AgAtgCt88B.1.177.410.02
S253D253NGatAat88B.1.20.00007
S253D253GgAtgGt88B.1.36.290.004139
S253D253HGatCat88B.1.4800.0199
S253D253YGatTat77A.10.001973
S253D253GgAtgGt77AY.1190.000247
S253D253DgaTgaC77AY.250.000042
S253D253NGatAat77AY.290.00011
S253D253VgAtgTt77AY.30.00007
S253D253VgAtgTt77AY.40.000011
S253D253YGatTat77AY.430.000031
S253D253GgAtgGt77B.1.1.2140.000388
S253D253NGatAat77B.1.1.5190.000278
S253D253GgAtgGt77B.1.177.730.003964
S253D253GgAtgGt77B.1.2340.000924
S253D253DgaTgaC77B.1.617.10.000903
S253D253del1Gat-at66All0.000001
S253D253GgAtgGt66AY.1060.002009
S253D253YGatTat66AY.1140.001387
S253D253AgAtgCt66AY.250.000036
S253D253AgAtgCt66AY.390.000148
S253D253YGatTat66AY.390.000148
S253D253EgaTgaG66AY.40.000009
S253D253NGatAat66AY.430.000027
S253D253GgAtgGt66B.1.1.4160.00543
S253D253YGatTat66B.1.20.000053
S253D253DgaTgaC66B.1.3510.000178
S253D253GgAtgGt66B.1.6210.000531
S253D253del1Gat-at66C.370.000696
S253D253delGAT---66P.1.150.001394
S253D253GgAtgGt66Q.10.000758
S253D253DgaTgaC55AY.1000.00023
S253D253GgAtgGt55AY.1010.002452
S253D253AgAtgCt55AY.110.006693
S253D253YGatTat55AY.1180.000313
S253D253GgAtgGt55AY.140.00044
S253D253delGAT---55AY.250.00003
S253D253GgAtgGt55AY.260.000142
S253D253delGAT---55AY.430.000022
S253D253GgAtgGt55AY.60.000206
S253D253GgAtgGt55AY.90.000338
S253D253AgAtgCt55AY.9.20.000184
S253D253AgAtgCt55B.10.000046
S253D253GgAtgGt55B.1.1.330.002104
S253D253GgAtgGt55B.1.5750.001517
S253D253delGAT---55B.1.617.20.000019
S253D253delGAT---55B.1.6210.000443
S253D253delGAT---55P.10.000079
S253D253GgAtgGt44AY.1170.000338
S253D253GgAtgGt44AY.1200.000149
S253D253GgAtgGt44AY.160.001519
S253D253delGAT---44AY.290.000063
S253D253YGatTat44AY.30.00004
S253D253GgAtgGt44AY.420.000161
S253D253AgAtgCt44AY.860.00332
S253D253GgAtgGt44AY.9.10.000335
S253D253VgAtgTt44AY.9.10.000335
S253D253GgAtgGt44AY.9.20.000147
S253D253delGAT---44B.10.000037
S253D253GgAtgGt44B.1.1.3480.003185
S253D253AgAtgCt44B.1.2450.125
S253D253DgaTgaC44B.1.4290.000094
S253D253VgAtgTt44B.1.5260.000094
S253D253GgAtgGt44B.1.5610.001588
S253D253VgAtgTt44B.1.617.20.000015
S253D253del2gATg--23All0
S253D253del2GAt--t13All0
S253D253NGatAat33AY.1020.00008
S253D253GgAtgGt33AY.1140.000693
S253D253VgAtgTt33AY.1170.000254
S253D253GgAtgGt33AY.1180.000188
S253D253GgAtgGt33AY.120.000948
S253D253DgaTgaC33AY.230.000209
S253D253NGatAat33AY.260.000085
S253D253VgAtgTt33AY.290.000047
S253D253EgaTgaG33AY.3.10.000256
S253D253GgAtgGt33AY.4.20.000065
S253D253NGatAat33AY.440.000018
S253D253VgAtgTt33AY.440.000018
S253D253GgAtgGt33AY.460.000312
S253D253NGatAat33AY.470.000093
S253D253GgAtgGt33AY.50.000062
S253D253GgAtgGt33AY.530.000863
S253D253AgAtgCt33AY.550.002752
S253D253GgAtgGt33AY.610.000314
S253D253GgAtgGt33AY.75.10.000541
S253D253AgAtgCt33AY.9.10.000251
S253D253DgaTgaC33B.10.000027
S253D253YGatTat33B.1.10.000054
S253D253AgAtgCt33B.1.10.000054
S253D253GgAtgGt33B.1.1.10.00098
S253D253YGatTat33B.1.1.4130.02069
S253D253GgAtgGt33B.1.1.510.005155
S253D253delGAT---33B.1.1770.00004
S253D253DgaTgaC33B.1.1770.00004
S253D253YGatTat33B.1.177.120.000455
S253D253DgaTgaC33B.1.20.000026
S253D253GgAtgGt33B.1.2410.002435
S253D253NGatAat33B.1.4160.003807
S253D253GgAtgGt33B.1.438.10.000322
S253D253DgaTgaC33B.1.4740.005703
S253D253GgAtgGt33B.1.5250.000339
S253D253YGatTat33B.1.6090.001438
S253D253GgAtgGt33C.370.000348
S253D253delGAT---33C.370.000348
S253D253GgAtgGt33N.50.0053
S253D253GgAtgGt33P.1.150.000697
S253D253GgAtgGt33P.1.170.000485
S253D253NGaTAaC220.111111
S253D253NGatAat22A.30.004193
S253D253NGatAat22AY.1000.000092
S253D253delGAT---22AY.1020.000053
S253D253AgAtgCt22AY.1020.000053
S253D253VgAtgTt22AY.1030.000012
S253D253AgAtgCt22AY.1030.000012
S253D253GgAtgGt22AY.1160.000574
S253D253NGatAat22AY.1190.000071
S253D253YGatTat22AY.120.000632
S253D253GgAtgGt22AY.1210.000271
S253D253YGatTat22AY.130.000322
S253D253DgaTgaC22AY.200.000078
S253D253VgAtgTt22AY.200.000078
S253D253YGatTat22AY.230.000139
S253D253AgAtgCt22AY.260.000057
S253D253AgAtgCt22AY.30.00002
S253D253GgAtgGt22AY.320.001065
S253D253NGatAat22AY.330.000134
S253D253GgAtgGt22AY.340.000194
S253D253GgAtgGt22AY.360.000296
S253D253YGatTat22AY.360.000296
S253D253YGatTat22AY.380.000999
S253D253GgAtgGt22AY.39.10.000079
S253D253delGAT---22AY.40.000003
S253D253delGAT---22AY.4.50.000215
S253D253delGAT---22AY.440.000012
S253D253DgaTgaC22AY.460.000208
S253D253VgAtgTt22AY.46.50.000397
S253D253DgaTgaC22AY.46.60.000144
S253D253YGatTat22AY.470.000062
S253D253VgAtgTt22AY.530.000575
S253D253GgAtgGt22AY.680.000547
S253D253GgAtgGt22AY.690.000373
S253D253GgAtgGt22AY.740.000231
S253D253AgAtgCt22AY.750.000112
S253D253GgAtgGt22AY.780.003082
S253D253YGatTat22AY.870.001665
S253D253DgaTgaC22AY.880.001768
S253D253GgAtgGt22AY.980.000158
S253D253GgAtgGt22B0.000256
S253D253NGatAat22B0.000256
S253D253DgaTgaC22B.1.10.000036
S253D253NGatAat22B.1.10.000036
S253D253GgAtgGt22B.1.1.1610.007067
S253D253NGatAat22B.1.1.2160.001781
S253D253GgAtgGt22B.1.1.2200.003717
S253D253GgAtgGt22B.1.1.2220.000408
S253D253GgAtgGt22B.1.1.3170.000823
S253D253GgAtgGt22B.1.1.3180.000604
S253D253NGatAat22B.1.1.3260.003521
S253D253GgAtgGt22B.1.1.4290.009217
S253D253YGatTat22B.1.1.5190.000079
S253D253HGatCat22B.1.1.5190.000079
S253D253YGatTat22B.1.1770.000026
S253D253AgAtgCt22B.1.1770.000026
S253D253DgaTgaC22B.1.177.150.001262
S253D253DgaTgaC22B.1.177.500.00939
S253D253GgAtgGt22B.1.177.570.000562
S253D253AgAtgCt22B.1.20.000018
S253D253NGatAat22B.1.2580.000133
S253D253GgAtgGt22B.1.258.170.000208
S253D253GgAtgGt22B.1.3110.000549
S253D253GgAtgGt22B.1.3510.000059
S253D253YGatTat22B.1.351.30.001753
S253D253GgAtgGt22B.1.360.000292
S253D253GgAtgGt22B.1.3670.001585
S253D253GgAtgGt22B.1.3910.002255
S253D253VgAtgTt22B.1.4260.002018
S253D253GgAtgGt22B.1.466.20.000782
S253D253GgAtgGt22B.1.4970.00063
S253D253delGAT---22B.1.5250.000226
S253D253GgAtgGt22B.1.5330.019231
S253D253GgAtgGt22B.1.5640.000852
S253D253GgAtgGt22B.1.5670.006667
S253D253GgAtgGt22B.1.5760.001813
S253D253GgAtgGt22B.1.5800.00813
S253D253GgAtgGt22B.1.5820.000981
S253D253GgAtgGt22B.1.617.10.000258
S253D253NGatAat22B.1.6230.001073
S253D253NGatAat22C.390.037736
S253D253GgAtgGt22D.20.00015
S253D253NGatAat22P.10.000032
S253D253YGatTat22P.10.000032
S253D253GgAtgGt22P.1.10.000635
S253D253GgAtgGt22P.1.100.000539
S253D253GgAtgGt22P.1.120.000968
S253D253GgAtgGt22P.1.140.000096
S253D253YGatTat22P.1.140.000096
S253D253GgAtgGt22P.20.000373
S253D253GgAtgGt11A.2.50.000499
S253D253delGAT---11A.2.50.000499
S253D253GgAtgGt11A.2.5.10.004808
S253D253GgAtgGt11A.2.5.30.010309
S253D253AgAtgCt11A.23.10.000704
S253D253DgaTgaC11AA.40.009091
S253D253XGaTTaA11All0
S253D253QGaTCaG11All0
S253D253CGAtTGt11All0
S253D253GgAtgGt11AT.10.005128
S253D253GgAtgGt11AY.100.00053
S253D253delGAT---11AY.1010.00049
S253D253YGatTat11AY.1020.000027
S253D253EgaTgaG11AY.1030.000006
S253D253YGatTat11AY.1030.000006
S253D253YGatTat11AY.1040.001984
S253D253NGatAat11AY.1100.000113
S253D253GgAtgGt11AY.1100.000113
S253D253GgAtgGt11AY.1110.000183
S253D253delGAT---11AY.1110.000183
S253D253AgAtgCt11AY.1140.000231
S253D253DgaTgaC11AY.1160.000287
S253D253VgAtgTt11AY.1160.000287
S253D253delGAT---11AY.1170.000085
S253D253delGAT---11AY.1180.000063
S253D253DgaTgaC11AY.120.000316
S253D253AgAtgCt11AY.120.000316
S253D253AgAtgCt11AY.1200.000037
S253D253YGatTat11AY.120.2.10.000498
S253D253AgAtgCt11AY.130.000161
S253D253VgAtgTt11AY.130.000161
S253D253AgAtgCt11AY.16.10.00047
S253D253YGatTat11AY.200.000039
S253D253NGatAat11AY.200.000039
S253D253VgAtgTt11AY.230.00007
S253D253NGatAat11AY.230.00007
S253D253GgAtgGt11AY.230.00007
S253D253AgAtgCt11AY.240.000431
S253D253GgAtgGt11AY.240.000431
S253D253EgaTgaG11AY.250.000006
S253D253NGatAat11AY.250.000006
S253D253YGatTat11AY.260.000028
S253D253AgAtgCt11AY.290.000016
S253D253VgAtgTt11AY.29.10.000221
S253D253GgAtgGt11AY.29.10.000221
S253D253delGAT---11AY.30.00001
S253D253DgaTgaC11AY.300.000396
S253D253GgAtgGt11AY.300.000396
S253D253AgAtgCt11AY.330.000067
S253D253delGAT---11AY.330.000067
S253D253DgaTgaC11AY.340.000097
S253D253VgAtgTt11AY.360.000148
S253D253DgaTgaC11AY.370.000316
S253D253EgaTgaG11AY.4.10.000737
S253D253YGatTat11AY.4.20.000022
S253D253DgaTgaC11AY.4.20.000022
S253D253CGAtTGt11AY.4.20.000022
S253D253AgAtgCt11AY.4.40.000409
S253D253QGaTCaG11AY.420.00004
S253D253VgAtgTt11AY.430.000004
S253D253DgaTgaC11AY.440.000006
S253D253HGatCat11AY.440.000006
S253D253DgaTgaC11AY.450.000122
S253D253EgaTgaG11AY.450.000122
S253D253NGatAat11AY.460.000104
S253D253GgAtgGt11AY.46.20.000635
S253D253NGatAat11AY.46.40.000165
S253D253DgaTgaC11AY.470.000031
S253D253NGatAat11AY.50.000021
S253D253DgaTgaC11AY.50.000021
S253D253VgAtgTt11AY.50.000021
S253D253AgAtgCt11AY.50.000021
S253D253AgAtgCt11AY.530.000288
S253D253AgAtgCt11AY.580.000907
S253D253YGatTat11AY.590.00053
S253D253NGatAat11AY.590.00053
S253D253AgAtgCt11AY.590.00053
S253D253del2gATg--11AY.60.000041
S253D253YGatTat11AY.610.000105
S253D253AgAtgCt11AY.620.000436
S253D253GgAtgGt11AY.620.000436
S253D253GgAtgGt11AY.640.000595
S253D253delGAT---11AY.650.000533
S253D253delGAT---11AY.670.000464
S253D253AgAtgCt11AY.670.000464
S253D253YGatTat11AY.7.20.000559
S253D253VgAtgTt11AY.710.000475
S253D253AgAtgCt11AY.710.000475
S253D253delGAT---11AY.710.000475
S253D253EgaTgaG11AY.740.000116
S253D253DgaTgaC11AY.750.000056
S253D253YGatTat11AY.850.000427
S253D253GgAtgGt11AY.860.00083
S253D253NGatAat11AY.9.10.000084
S253D253delGAT---11AY.9.20.000037
S253D253GgAtgGt11AY.910.00073
S253D253DgaTgaC11AY.920.000287
S253D253delGAT---11AY.950.000761
S253D253DgaTgaC11AY.950.000761
S253D253AgAtgCt11AY.980.000079
S253D253EgaTgaG11AY.990.001049
S253D253GgAtgGt11AY.99.10.001553
S253D253GgAtgGt11AY.99.20.000092
S253D253YGatTat11AY.99.20.000092
S253D253GgAtgGt11AZ.20.000821
S253D253AgAtgCt11B0.000128
S253D253VgAtgTt11B.1.10.000018
S253D253NGatAat11B.1.1.10.000327
S253D253DgaTgaC11B.1.1.10.000327
S253D253NGatAat11B.1.1.1130.006993
S253D253GgAtgGt11B.1.1.1530.001095
S253D253delGAT---11B.1.1.1590.004673
S253D253GgAtgGt11B.1.1.1720.018182
S253D253GgAtgGt11B.1.1.1760.000439
S253D253YGatTat11B.1.1.2100.005714
S253D253GgAtgGt11B.1.1.2160.00089
S253D253NGatAat11B.1.1.2220.000204
S253D253DgaTgaC11B.1.1.2220.000204
S253D253NGatAat11B.1.1.2290.005747
S253D253NGatAat11B.1.1.2410.00207
S253D253GgAtgGt11B.1.1.280.000311
S253D253YGatTat11B.1.1.3010.001179
S253D253GgAtgGt11B.1.1.3030.002762
S253D253GgAtgGt11B.1.1.3060.000438
S253D253NGatAat11B.1.1.3060.000438
S253D253GgAtgGt11B.1.1.310.066667
S253D253NGatAat11B.1.1.3180.000302
S253D253GgAtgGt11B.1.1.3220.008772
S253D253NGatAat11B.1.1.330.000421
S253D253GgAtgGt11B.1.1.340.013158
S253D253NGatAat11B.1.1.3480.000796
S253D253NGatAat11B.1.1.370.000193
S253D253GgAtgGt11B.1.1.370.000193
S253D253NGatAat11B.1.1.3720.000689
S253D253GgAtgGt11B.1.1.4090.002833
S253D253GgAtgGt11B.1.1.4190.007407
S253D253EgaTgaG11B.1.1.4220.045455
S253D253GgAtgGt11B.1.1.4340.000349
S253D253GgAtgGt11B.1.1.4380.05
S253D253GgAtgGt11B.1.1.4620.008621
S253D253YGatTat11B.1.1.510.001718
S253D253AgAtgCt11B.1.1.5190.00004
S253D253NGatAat11B.1.1.5280.004808
S253D253XGaTTaA11B.1.1.70.000001
S253D253del2GAt--t11B.1.1.70.000001
S253D253GgAtgGt11B.1.1.980.018519
S253D253VgAtgTt11B.1.1200.007692
S253D253YGatTat11B.1.1570.002985
S253D253HGatCat11B.1.1600.000031
S253D253GgAtgGt11B.1.160.150.00495
S253D253NGatAat11B.1.177.150.000631
S253D253GgAtgGt11B.1.177.440.000519
S253D253YGatTat11B.1.177.570.000281
S253D253YGatTat11B.1.177.690.001484
S253D253delGAT---11B.1.177.690.001484
S253D253delGAT---11B.1.177.760.002494
S253D253delGAT---11B.1.20.000009
S253D253GgAtgGt11B.1.2060.000816
S253D253delGAT---11B.1.2210.000071
S253D253YGatTat11B.1.2360.002053
S253D253GgAtgGt11B.1.2360.002053
S253D253GgAtgGt11B.1.2390.001221
S253D253GgAtgGt11B.1.2400.000216
S253D253YGatTat11B.1.2430.00007
S253D253YGatTat11B.1.258.170.000104
S253D253AgAtgCt11B.1.258.170.000104
S253D253GgAtgGt11B.1.2930.0125
S253D253DgaTgaC11B.1.3110.000275
S253D253GgAtgGt11B.1.3190.003049
S253D253GgAtgGt11B.1.3290.000608
S253D253delGAT---11B.1.3510.00003
S253D253GgAtgGt11B.1.351.20.000303
S253D253YGatTat11B.1.36.170.000494
S253D253NGatAat11B.1.36.170.000494
S253D253GgAtgGt11B.1.3610.001289
S253D253NGatAat11B.1.3690.000285
S253D253DgaTgaC11B.1.3690.000285
S253D253GgAtgGt11B.1.3750.00082
S253D253GgAtgGt11B.1.4030.003268
S253D253NGatAat11B.1.4110.003704
S253D253AgAtgCt11B.1.4260.001009
S253D253YGatTat11B.1.4270.00005
S253D253AgAtgCt11B.1.4270.00005
S253D253HGatCat11B.1.4290.000024
S253D253NGatAat11B.1.4290.000024
S253D253delGAT---11B.1.4290.000024
S253D253AgAtgCt11B.1.4290.000024
S253D253NGatAat11B.1.466.20.000391
S253D253GgAtgGt11B.1.5170.000427
S253D253delGAT---11B.1.5260.000024
S253D253GgAtgGt11B.1.5440.006024
S253D253delGAT---11B.1.5610.000397
S253D253YGatTat11B.1.5610.000397
S253D253GgAtgGt11B.1.5680.001111
S253D253GgAtgGt11B.1.5950.000261
S253D253YGatTat11B.1.5960.000087
S253D253YGatTat11B.1.617.10.000129
S253D253GgAtgGt11B.1.6200.000946
S253D253delGAT---11B.1.6200.000946
S253D253NGatAat11B.1.6210.000089
S253D253DgaTgaC11B.1.6210.000089
S253D253GgAtgGt11B.1.621.10.000506
S253D253NGatAat11B.1.621.10.000506
S253D253YGatTat11B.1.6230.000536
S253D253GgAtgGt11B.1.6250.002353
S253D253YGatTat11B.1.6280.000352
S253D253NGatAat11B.1.6370.000073
S253D253AgAtgCt11B.30.000831
S253D253YGatTat11B.60.00091
S253D253DgaTgaC11B.6.60.000889
S253D253EgaTgaG11C.140.004329
S253D253YGatTat11C.370.000116
S253D253DgaTgaC11D.20.000075
S253D253VgAtgTt11D.20.000075
S253D253EgaTgaA11D.20.000075
S253D253GgAtgGt11N.30.005814
S253D253delGAT---11P.1.10.000318
S253D253GgAtgGt11P.1.130.000898
S253D253NGatAat11P.1.140.000048
S253D253DgaTgaC11P.1.140.000048
S253D253del2gATg--11P.1.150.000232
S253D253GgAtgGt11P.1.160.000374
S253D253DgaTgaC11P.20.000187
S253D253NGatAat11Q.10.000126
S253D253YGatTat11Q.10.000126
S253D253GgAtgGt11Q.80.000165
S253D253NGatAat11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.