CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 252

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S252G252deldelGGT---77847784122316-22318
S252G252VnonsyngGtgTt12191219122316-22318
S252G252SnonsynGgtAgt458458122316-22318
S252G252DnonsyngGtgAt447447122316-22318
S252G252GsynggTggC1171090.93162422316-22318
S252G252GsynggTggA11750.04273522316-22318
S252G252GsynggTggG11730.02564122316-22318
S252G252RnonsynGgtCgt50490.9822316-22318
S252G252RnonsynGgTCgC5010.0222316-22318
S252G252EnonsyngGTgAA1010122316-22318
S252G252CnonsynGgtTgt77122316-22318
S252G252del2delGGT--N740.57142922316-22318
S252G252del2delGGt--t730.42857122316-22318
S252G252HnonsynGGtCAt55122316-22318
S252G252AnonsyngGtgCt540.822316-22318
S252G252AnonsyngGTgCA510.222316-22318
S252G252del1delGgt-gt210.522316-22318
S252G252del1delggTgg-210.522316-22318
S252G252MnonsynGGTATG11122316-22318

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S252G252delGGT---77847784All0.001489
S252G252delGGT---73917391C.370.857823
S252G252VgGtgTt12191219All0.000233
S252G252SGgtAgt458458All0.000088
S252G252VgGtgTt454454B.1.5170.193851
S252G252DgGtgAt447447All0.000085
S252G252delGGT---265265C.37.10.693717
S252G252VgGtgTt132132B.1.6320.885906
S252G252GggTggC109117All0.000021
S252G252GggTggA5117All0.000001
S252G252GggTggG3117All0.000001
S252G252DgGtgAt117117B.1.1.70.000105
S252G252VgGtgTt104104B.1.1.70.000093
S252G252DgGtgAt9292AY.40.000143
S252G252SGgtAgt8787B.1.1.70.000078
S252G252SGgtAgt6767AZ.20.055008
S252G252VgGtgTt5757AY.40.000089
S252G252SGgtAgt5353AY.250.000319
S252G252RGgtCgt4950All0.000009
S252G252RGgTCgC150All0
S252G252VgGtgTt4343B.1.5260.001011
S252G252SGgtAgt3737AY.440.000225
S252G252VgGtgTt3636B.1.4290.000847
S252G252VgGtgTt3434B.1.20.000299
S252G252VgGtgTt3434B.1.617.20.000128
S252G252DgGtgAt3333AY.10.013059
S252G252GggTggC3030AY.470.000933
S252G252VgGtgTt2929B.1.5960.002527
S252G252GggTggC2627B.1.1.70.000023
S252G252GggTggG127B.1.1.70.000001
S252G252VgGtgTt2525AY.1030.000155
S252G252DgGtgAt2121AY.30.000209
S252G252VgGtgTt2020AY.440.000122
S252G252VgGtgTt2020B.1.6370.001461
S252G252RGgtCgt1919B.1.1600.000593
S252G252VgGtgTt1818AY.250.000108
S252G252SGgtAgt1818AY.4.20.00039
S252G252DgGtgAt1717B.1.617.20.000064
S252G252delGGT---1717P.1.150.00395
S252G252DgGtgAt1616AY.1030.000099
S252G252SGgtAgt1616AY.40.000025
S252G252DgGtgAt1616AY.470.000498
S252G252delGGT---1616B.1.1.70.000014
S252G252DgGtgAt1515B.1.177.580.019973
S252G252VgGtgTt1414B.10.000128
S252G252SGgtAgt1414B.1.5260.000329
S252G252VgGtgTt1313AY.1000.000598
S252G252VgGtgTt1212AY.430.000053
S252G252VgGtgTt1212AY.540.001144
S252G252VgGtgTt1111AY.1200.000409
S252G252VgGtgTt1111B.1.1.280.003424
S252G252RGgtCgt1111B.1.1.70.00001
S252G252EgGTgAA1010All0.000002
S252G252SGgtAgt1010AY.3.10.000853
S252G252delGGT---1010AY.40.000016
S252G252RGgtCgt1010B.1.5250.001132
S252G252SGgtAgt1010B.1.617.20.000038
S252G252SGgtAgt99AY.1030.000056
S252G252delGGT---99B.10.000082
S252G252SGgtAgt99B.1.20.000079
S252G252DgGtgAt88AY.1020.000212
S252G252SGgtAgt88AY.290.000126
S252G252SGgtAgt88AY.340.000776
S252G252VgGtgTt88AY.420.000322
S252G252CGgtTgt77All0.000001
S252G252del2GGT--N47All0.000001
S252G252del2GGt--t37All0.000001
S252G252VgGtgTt77B.1.10.000127
S252G252SGgtAgt77B.1.1.410.044304
S252G252VgGtgTt77B.1.3510.000208
S252G252GggTggC77B.1.617.20.000026
S252G252DgGtgAt66AY.116.10.001869
S252G252VgGtgTt66AY.30.00006
S252G252VgGtgTt66AY.4.20.00013
S252G252delGGT---66AY.430.000027
S252G252SGgtAgt66B.1.1.500.004073
S252G252GggTggC66B.1.1600.000187
S252G252VgGtgTt66B.1.177.40.001266
S252G252VgGtgTt66B.1.2580.000399
S252G252delGGT---66B.1.617.20.000023
S252G252del2GGt--t36C.370.000348
S252G252del2GGT--N36C.370.000348
S252G252delGGT---66P.10.000095
S252G252HGGtCAt55All0.000001
S252G252AgGtgCt45All0.000001
S252G252AgGTgCA15All0
S252G252DgGtgAt55AY.1190.000177
S252G252delGGT---55AY.250.00003
S252G252GggTggC45AY.40.000006
S252G252GggTggA15AY.40.000002
S252G252VgGtgTt55B.1.2430.000348
S252G252GggTggC55B.1.243.10.111111
S252G252SGgtAgt55B.1.351.30.004382
S252G252SGgtAgt55B.1.4290.000118
S252G252delGGT---55B.1.6210.000443
S252G252HGGtCAt55C.370.00058
S252G252VgGtgTt44AY.200.000155
S252G252SGgtAgt44AY.260.000113
S252G252delGGT---44AY.290.000063
S252G252VgGtgTt44AY.330.000267
S252G252DgGtgAt44AY.380.001997
S252G252DgGtgAt44AY.390.000099
S252G252SGgtAgt44AY.39.10.000158
S252G252SGgtAgt44AY.50.000083
S252G252VgGtgTt44AY.50.000083
S252G252SGgtAgt44B.10.000037
S252G252DgGtgAt44B.1.10.000073
S252G252SGgtAgt33AY.1020.00008
S252G252delGGT---33AY.1020.00008
S252G252DgGtgAt33AY.140.000264
S252G252SGgtAgt33AY.30.00003
S252G252DgGtgAt33AY.430.000013
S252G252SGgtAgt33AY.430.000013
S252G252EgGTgAA33AY.440.000018
S252G252VgGtgTt33AY.46.60.000217
S252G252VgGtgTt33AY.470.000093
S252G252DgGtgAt33AY.540.000286
S252G252GggTggC33AY.610.000314
S252G252VgGtgTt33AY.830.005172
S252G252DgGtgAt33AY.90.000203
S252G252GggTggC33AY.9.20.00011
S252G252GggTggC33B.1.10.000054
S252G252SGgtAgt33B.1.1.2140.000166
S252G252DgGtgAt33B.1.1.2220.000612
S252G252SGgtAgt33B.1.1.250.001706
S252G252EgGTgAA33B.1.1.5260.010638
S252G252SGgtAgt33B.1.1770.00004
S252G252delGGT---33B.1.1770.00004
S252G252VgGtgTt33B.1.258.170.000312
S252G252SGgtAgt33B.1.3510.000089
S252G252DgGtgAt33B.1.4290.000071
S252G252DgGtgAt33B.1.6090.001438
S252G252VgGtgTt33P.10.000047
S252G252delGGT---220.111111
S252G252GggTggA12A.2.40.003367
S252G252GggTggC12A.2.40.003367
S252G252del1Ggt-gt12All0
S252G252del1ggTgg-12All0
S252G252VgGtgTt22AY.10.000791
S252G252SGgtAgt22AY.1000.000092
S252G252RGgtCgt22AY.1000.000092
S252G252VgGtgTt22AY.1020.000053
S252G252DgGtgAt22AY.1210.000271
S252G252DgGtgAt22AY.200.000078
S252G252SGgtAgt22AY.230.000139
S252G252VgGtgTt22AY.290.000032
S252G252SGgtAgt22AY.390.000049
S252G252VgGtgTt22AY.390.000049
S252G252delGGT---22AY.4.50.000215
S252G252delGGT---22AY.440.000012
S252G252DgGtgAt22AY.440.000012
S252G252VgGtgTt22AY.450.000243
S252G252DgGtgAt22AY.460.000208
S252G252SGgtAgt22AY.460.000208
S252G252VgGtgTt22AY.530.000575
S252G252SGgtAgt22AY.60.000082
S252G252SGgtAgt22AY.610.00021
S252G252SGgtAgt22AY.690.000373
S252G252VgGtgTt22AY.80.001212
S252G252DgGtgAt22B.10.000018
S252G252GggTggC12B.10.000009
S252G252GggTggG12B.10.000009
S252G252delGGT---22B.1.10.000036
S252G252DgGtgAt22B.1.1.1760.000879
S252G252DgGtgAt22B.1.1.2840.000215
S252G252SGgtAgt22B.1.1.2860.005797
S252G252SGgtAgt22B.1.1.3180.000604
S252G252VgGtgTt22B.1.1.4330.002849
S252G252EgGTgAA22B.1.1.5190.000079
S252G252SGgtAgt22B.1.1.5190.000079
S252G252VgGtgTt22B.1.1.5230.003125
S252G252DgGtgAt22B.1.1390.001466
S252G252VgGtgTt22B.1.1770.000026
S252G252VgGtgTt22B.1.177.810.000379
S252G252delGGT---22B.1.20.000018
S252G252SGgtAgt22B.1.2580.000133
S252G252DgGtgAt22B.1.2580.000133
S252G252DgGtgAt22B.1.360.000292
S252G252DgGtgAt22B.1.4270.000101
S252G252VgGtgTt22B.1.517.10.010526
S252G252delGGT---22B.1.5250.000226
S252G252DgGtgAt22B.1.5260.000047
S252G252DgGtgAt22B.1.5960.000174
S252G252VgGtgTt22B.1.6230.001073
S252G252VgGtgTt22B.1.6280.000705
S252G252VgGtgTt22B.1.6340.006849
S252G252VgGtgTt22B.1.6380.105263
S252G252delGGT---22C.390.037736
S252G252DgGtgAt22P.10.000032
S252G252DgGtgAt22P.20.000373
S252G252VgGtgTt22P.20.000373
S252G252DgGtgAt22Q.10.000253
S252G252delGGT---11A.2.50.000499
S252G252DgGtgAt11AE.80.000489
S252G252MGGTATG11All0
S252G252SGgtAgt11AT.10.005128
S252G252VgGtgTt11AU.20.002421
S252G252delGGT---11AY.1010.00049
S252G252GggTggC11AY.1020.000027
S252G252GggTggC11AY.1070.000466
S252G252GggTggC11AY.1100.000113
S252G252delGGT---11AY.1110.000183
S252G252GggTggA11AY.1140.000231
S252G252delGGT---11AY.1170.000085
S252G252DgGtgAt11AY.1170.000085
S252G252delGGT---11AY.1180.000063
S252G252VgGtgTt11AY.1180.000063
S252G252SGgtAgt11AY.200.000039
S252G252GggTggC11AY.230.00007
S252G252DgGtgAt11AY.250.000006
S252G252EgGTgAA11AY.260.000028
S252G252DgGtgAt11AY.260.000028
S252G252DgGtgAt11AY.270.000065
S252G252GggTggC11AY.290.000016
S252G252delGGT---11AY.30.00001
S252G252GggTggC11AY.30.00001
S252G252VgGtgTt11AY.3.10.000085
S252G252delGGT---11AY.330.000067
S252G252DgGtgAt11AY.330.000067
S252G252DgGtgAt11AY.350.000233
S252G252SGgtAgt11AY.360.000148
S252G252AgGtgCt11AY.39.10.00004
S252G252SGgtAgt11AY.39.20.001541
S252G252AgGtgCt11AY.40.000002
S252G252del1ggTgg-11AY.40.000002
S252G252EgGTgAA11AY.40.000002
S252G252DgGtgAt11AY.4.2.10.000149
S252G252DgGtgAt11AY.4.50.000107
S252G252SGgtAgt11AY.4.50.000107
S252G252VgGtgTt11AY.4.50.000107
S252G252GggTggG11AY.420.00004
S252G252RGgTCgC11AY.420.00004
S252G252AgGTgCA11AY.440.000006
S252G252CGgtTgt11AY.440.000006
S252G252DgGtgAt11AY.450.000122
S252G252SGgtAgt11AY.450.000122
S252G252DgGtgAt11AY.46.10.001027
S252G252SGgtAgt11AY.5.30.000337
S252G252DgGtgAt11AY.530.000288
S252G252GggTggC11AY.550.000917
S252G252DgGtgAt11AY.550.000917
S252G252DgGtgAt11AY.590.00053
S252G252GggTggC11AY.60.000041
S252G252VgGtgTt11AY.610.000105
S252G252DgGtgAt11AY.610.000105
S252G252delGGT---11AY.650.000533
S252G252GggTggC11AY.670.000464
S252G252DgGtgAt11AY.670.000464
S252G252delGGT---11AY.670.000464
S252G252DgGtgAt11AY.680.000274
S252G252SGgtAgt11AY.740.000116
S252G252GggTggC11AY.75.10.00018
S252G252VgGtgTt11AY.75.10.00018
S252G252VgGtgTt11AY.780.001541
S252G252AgGtgCt11AY.850.000427
S252G252VgGtgTt11AY.9.20.000037
S252G252delGGT---11AY.9.20.000037
S252G252DgGtgAt11AY.920.000287
S252G252SGgtAgt11AY.930.000273
S252G252delGGT---11AY.950.000761
S252G252DgGtgAt11AY.98.10.000048
S252G252SGgtAgt11AY.98.10.000048
S252G252SGgtAgt11AY.99.20.000092
S252G252CGgtTgt11B0.000128
S252G252RGgtCgt11B.10.000009
S252G252CGgtTgt11B.1.10.000018
S252G252delGGT---11B.1.1.10.000327
S252G252delGGT---11B.1.1.1590.004673
S252G252VgGtgTt11B.1.1.1760.000439
S252G252DgGtgAt11B.1.1.2160.00089
S252G252SGgtAgt11B.1.1.2770.000759
S252G252VgGtgTt11B.1.1.2840.000107
S252G252DgGtgAt11B.1.1.2880.001916
S252G252GggTggC11B.1.1.3050.003861
S252G252delGGT---11B.1.1.3480.000796
S252G252GggTggA11B.1.1.3540.004386
S252G252SGgtAgt11B.1.1.370.000193
S252G252VgGtgTt11B.1.1.370.000193
S252G252delGGT---11B.1.1.3720.000689
S252G252VgGtgTt11B.1.1.5190.00004
S252G252SGgtAgt11B.1.1.5230.001563
S252G252SGgtAgt11B.1.1.5260.003546
S252G252delGGT---11B.1.1.5280.004808
S252G252CGgtTgt11B.1.1.630.000386
S252G252CGgtTgt11B.1.1.70.000001
S252G252MGGTATG11B.1.1.70.000001
S252G252VgGtgTt11B.1.1.700.000341
S252G252DgGtgAt11B.1.1600.000031
S252G252SGgtAgt11B.1.1600.000031
S252G252SGgtAgt11B.1.160.100.008065
S252G252VgGtgTt11B.1.160.160.000929
S252G252GggTggC11B.1.1770.000013
S252G252DgGtgAt11B.1.177.160.000664
S252G252SGgtAgt11B.1.177.40.000211
S252G252DgGtgAt11B.1.177.420.000894
S252G252GggTggC11B.1.177.440.000519
S252G252VgGtgTt11B.1.177.570.000281
S252G252GggTggC11B.1.177.600.000218
S252G252delGGT---11B.1.177.690.001484
S252G252delGGT---11B.1.177.760.002494
S252G252SGgtAgt11B.1.177.820.000477
S252G252VgGtgTt11B.1.177.870.000728
S252G252del1Ggt-gt11B.1.20.000009
S252G252DgGtgAt11B.1.20.000009
S252G252delGGT---11B.1.2210.000071
S252G252GggTggC11B.1.2320.000537
S252G252RGgtCgt11B.1.2340.000132
S252G252VgGtgTt11B.1.2400.000216
S252G252SGgtAgt11B.1.258.170.000104
S252G252RGgtCgt11B.1.2600.003344
S252G252DgGtgAt11B.1.3490.000715
S252G252DgGtgAt11B.1.3500.002933
S252G252DgGtgAt11B.1.3510.00003
S252G252delGGT---11B.1.3510.00003
S252G252VgGtgTt11B.1.360.000146
S252G252VgGtgTt11B.1.36.290.000517
S252G252SGgtAgt11B.1.36.80.001
S252G252DgGtgAt11B.1.3960.000706
S252G252RGgtCgt11B.1.4270.00005
S252G252GggTggC11B.1.4290.000024
S252G252delGGT---11B.1.4290.000024
S252G252SGgtAgt11B.1.466.20.000391
S252G252DgGtgAt11B.1.4700.001404
S252G252VgGtgTt11B.1.4970.000315
S252G252SGgtAgt11B.1.5250.000113
S252G252DgGtgAt11B.1.5250.000113
S252G252VgGtgTt11B.1.5250.000113
S252G252SGgtAgt11B.1.5580.004566
S252G252VgGtgTt11B.1.5610.000397
S252G252delGGT---11B.1.5610.000397
S252G252SGgtAgt11B.1.5640.000426
S252G252SGgtAgt11B.1.5950.000261
S252G252VgGtgTt11B.1.5950.000261
S252G252DgGtgAt11B.1.617.10.000129
S252G252RGgtCgt11B.1.617.20.000004
S252G252delGGT---11B.1.6200.000946
S252G252del2GGT--N11B.1.6210.000089
S252G252RGgtCgt11B.1.6360.006711
S252G252GggTggC11B.1.6370.000073
S252G252CGgtTgt11B.30.000831
S252G252SGgtAgt11B.30.000831
S252G252GggTggC11B.310.003731
S252G252SGgtAgt11B.6.80.008264
S252G252CGgtTgt11B.600.015873
S252G252GggTggA11C.370.000116
S252G252DgGtgAt11C.370.000116
S252G252RGgtCgt11C.370.000116
S252G252GggTggC11C.400.027778
S252G252GggTggC11D.20.000075
S252G252AgGtgCt11D.20.000075
S252G252VgGtgTt11D.20.000075
S252G252delGGT---11P.1.10.000318
S252G252DgGtgAt11P.1.120.000484
S252G252DgGtgAt11P.1.150.000232
S252G252SGgtAgt11P.60.003145
S252G252VgGtgTt11Q.10.000126
S252G252VgGtgTt11Q.30.000145
S252G252DgGtgAt11Q.30.000145
S252G252VgGtgTt11Q.80.000165
S252G252VgGtgTt11R.10.00009
S252G252SGgtAgt11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.