CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 251

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S251P251LnonsyncCtcTt25462254540.99968622313-22315
S251P251LnonsynCCTTTA2546270.00027491922313-22315
S251P251LnonsyncCTcTA2546210.000039274222313-22315
S251P251deldelCCT---77787778122313-22315
S251P251SnonsynCctTct121312110.99835122313-22315
S251P251SnonsynCcTTcA121320.001648822313-22315
S251P251HnonsyncCtcAt9697300.75335422313-22315
S251P251HnonsyncCTcAC9692390.24664622313-22315
S251P251PsynccTccC3502520.7222313-22315
S251P251PsynccTccA350780.22285722313-22315
S251P251PsynccTccG350200.057142922313-22315
S251P251TnonsynCctAct318318122313-22315
S251P251del1delCct-ct87850.97701222313-22315
S251P251del1delCCT-NN8710.011494322313-22315
S251P251del1delccTcc-8710.011494322313-22315
S251P251RnonsyncCtcGt14130.92857122313-22315
S251P251RnonsyncCTcGA1410.071428622313-22315
S251P251FnonsynCCtTTt66122313-22315
S251P251XnonsynCCTTGA55122313-22315
S251P251del2delCCt--t310.33333322313-22315
S251P251del2delcCTc--310.33333322313-22315
S251P251del2delCCT--N310.33333322313-22315
S251P251AnonsynCctGct11122313-22315
S251P251NnonsynCCtAAt11122313-22315
S251P251CnonsynCCtTGt11122313-22315

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S251P251LcCtcTt2545425462All0.004868
S251P251LCCTTTA725462All0.000001
S251P251LcCTcTA125462All0
S251P251LcCtcTt1971819718AY.98.10.954959
S251P251delCCT---77787778All0.001488
S251P251delCCT---73977397C.370.858519
S251P251LcCtcTt24062406B.1.617.20.00906
S251P251LcCtcTt15591559AY.980.123153
S251P251SCctTct12111213All0.000232
S251P251SCcTTcA21213All0
S251P251HcCtcAt730969All0.00014
S251P251HcCTcAC239969All0.000046
S251P251SCctTct863863B.1.20.007599
S251P251LcCtcTt850850AY.75.10.153264
S251P251PccTccC252350All0.000048
S251P251PccTccA78350All0.000015
S251P251PccTccG20350All0.000004
S251P251TCctAct318318All0.000061
S251P251delCCT---267267C.37.10.698953
S251P251HcCTcAC237248AY.430.00105
S251P251HcCtcAt11248AY.430.000049
S251P251LcCtcTt220220B.1.1.70.000197
S251P251LcCtcTt211211AY.30.002099
S251P251HcCtcAt175175B.1.2390.213675
S251P251LcCtcTt110110AY.40.000171
S251P251LcCtcTt106106AB.10.868852
S251P251TCctAct103103B.1.1.70.000092
S251P251del1Cct-ct8587All0.000016
S251P251del1CCT-NN187All0
S251P251del1ccTcc-187All0
S251P251HcCtcAt8787P.10.001371
S251P251PccTccC8285B.1.1.70.000073
S251P251PccTccA385B.1.1.70.000003
S251P251SCctTct8484AY.1170.007099
S251P251TCctAct7373AY.200.002837
S251P251del1Cct-ct6666B.1.1.70.000059
S251P251HcCtcAt6565B.1.1.70.000058
S251P251SCctTct5858B.1.1.70.000052
S251P251HcCtcAt4141B.1.1.5190.001628
S251P251PccTccC3939D.20.002927
S251P251PccTccA3737B.1.2790.019004
S251P251PccTccC3233AY.40.00005
S251P251PccTccA133AY.40.000002
S251P251HcCtcAt3131AY.40.000048
S251P251TCctAct3131AY.40.000048
S251P251HcCtcAt2929B.1.617.20.000109
S251P251LcCtcTt2828AY.430.000124
S251P251HcCtcAt2828AY.440.00017
S251P251HcCtcAt2626B.1.2430.001809
S251P251SCctTct2525AY.40.000039
S251P251PccTccC2525B.1.438.10.002682
S251P251HcCtcAt2424AY.390.000593
S251P251HcCtcAt2323B.1.1770.000303
S251P251HcCtcAt2222B.10.000202
S251P251SCctTct2222B.1.2210.001563
S251P251SCctTct1919B.10.000174
S251P251TCctAct1717B.1.617.20.000064
S251P251delCCT---1717P.1.150.00395
S251P251PccTccC1516AY.250.00009
S251P251PccTccA116AY.250.000006
S251P251LcCtcTt1616AY.440.000097
S251P251LcCtcTt1616B.10.000147
S251P251SCctTct1515AY.1030.000093
S251P251PccTccG1515AY.600.014071
S251P251delCCT---1515B.1.1.70.000013
S251P251TCctAct1515B.1.351.50.008993
S251P251RcCtcGt1314All0.000002
S251P251RcCTcGA114All0
S251P251LcCtcTt1414AY.1030.000087
S251P251HcCtcAt1414AY.1030.000087
S251P251LcCtcTt1414B.1.1.2491
S251P251TCctAct1313AY.430.000058
S251P251PccTccA1313B.1.160.280.038012
S251P251SCctTct1212B.1.2580.000799
S251P251PccTccC911B.10.000082
S251P251PccTccA211B.10.000018
S251P251SCctTct1111B.1.4690.039711
S251P251HcCtcAt99AY.1180.000564
S251P251delCCT---99B.10.000082
S251P251SCctTct99B.1.617.20.000034
S251P251LCCTTTA79C.370.000812
S251P251LcCtcTt19C.370.000116
S251P251LcCTcTA19C.370.000116
S251P251HcCtcAt77AY.1110.001282
S251P251HcCtcAt77AY.30.00007
S251P251PccTccA67AY.440.000037
S251P251PccTccC17AY.440.000006
S251P251HcCtcAt77AY.50.000145
S251P251LcCtcTt77AY.750.000392
S251P251LcCtcTt77Q.70.007778
S251P251HcCtcAt66AB.10.04918
S251P251FCCtTTt66All0.000001
S251P251TCctAct66AY.250.000036
S251P251LcCtcTt66AY.250.000036
S251P251LcCtcTt66AY.340.000582
S251P251LcCtcTt66AY.390.000148
S251P251delCCT---66AY.430.000027
S251P251LcCtcTt66AY.46.60.000433
S251P251TCctAct66B.10.000055
S251P251LcCtcTt66B.1.1.2800.018519
S251P251PccTccC46B.1.1770.000053
S251P251PccTccA26B.1.1770.000026
S251P251TCctAct66B.1.2210.000426
S251P251SCctTct66B.1.5260.000141
S251P251SCctTct66B.1.5960.000523
S251P251delCCT---66B.1.617.20.000023
S251P251HcCtcAt66B.1.6210.000531
S251P251delCCT---66P.10.000095
S251P251XCCTTGA55All0.000001
S251P251LcCtcTt55AY.1200.000186
S251P251SCctTct55AY.250.00003
S251P251LcCtcTt55AY.260.000142
S251P251HcCtcAt55AY.3.10.000426
S251P251TCctAct55AY.470.000156
S251P251HcCtcAt55B.1.10.000091
S251P251HcCtcAt55B.1.1.3180.001509
S251P251PccTccC55B.1.177.120.000758
S251P251LcCtcTt55B.1.20.000044
S251P251HcCtcAt55B.1.20.000044
S251P251delCCT---55B.1.6210.000443
S251P251XCCTTGA55C.370.00058
S251P251del1Cct-ct440.222222
S251P251LcCtcTt44AY.1100.000451
S251P251TCctAct44AY.1190.000141
S251P251HcCtcAt44AY.230.000279
S251P251delCCT---44AY.250.000024
S251P251PccTccC44AY.290.000063
S251P251delCCT---44AY.290.000063
S251P251RcCtcGt44AY.30.00004
S251P251LcCtcTt44AY.34.10.00204
S251P251HcCtcAt34AY.420.000121
S251P251HcCTcAC14AY.420.00004
S251P251PccTccC44AY.430.000018
S251P251LcCtcTt44AY.46.50.000794
S251P251HcCtcAt44AY.470.000124
S251P251SCctTct44B.1.10.000073
S251P251SCctTct44B.1.1.5190.000159
S251P251TCctAct44B.1.4290.000094
S251P251LcCtcTt44B.1.6370.000292
S251P251del2CCT--N13All0
S251P251del2cCTc--13All0
S251P251del2CCt--t13All0
S251P251HcCtcAt33AY.1020.00008
S251P251delCCT---33AY.1020.00008
S251P251TCctAct33AY.1020.00008
S251P251TCctAct33AY.1030.000019
S251P251SCctTct33AY.1110.000549
S251P251HcCtcAt33AY.1130.000427
S251P251HcCtcAt33AY.140.000264
S251P251TCctAct33AY.30.00003
S251P251SCctTct33AY.30.00003
S251P251LcCtcTt33AY.3.10.000256
S251P251HcCtcAt33AY.320.001597
S251P251TCctAct33AY.340.000291
S251P251HcCtcAt33AY.4.20.000065
S251P251SCctTct33AY.440.000018
S251P251LcCtcTt33AY.460.000312
S251P251SCctTct33AY.470.000093
S251P251LcCtcTt33AY.5.40.00083
S251P251LcCtcTt33AY.540.000286
S251P251PccTccC33AY.790.003632
S251P251LcCtcTt33AY.840.001312
S251P251LcCtcTt33AY.9.20.00011
S251P251PccTccC33AY.9.20.00011
S251P251HcCtcAt33AY.99.20.000276
S251P251PccTccC33B.1.1.280.000934
S251P251delCCT---33B.1.1770.00004
S251P251del1Cct-ct33B.1.177.820.001432
S251P251PccTccC33B.1.20.000026
S251P251LcCtcTt33B.1.2430.000209
S251P251LcCtcTt33B.1.3510.000089
S251P251SCctTct33B.1.4290.000071
S251P251HcCtcAt33B.1.5250.000339
S251P251HcCtcAt33B.1.5260.000071
S251P251SCctTct33B.1.5710.029126
S251P251SCcTTcA23C.370.000232
S251P251SCctTct13C.370.000116
S251P251SCctTct33P.10.000047
S251P251PccTccC23P.10.000032
S251P251PccTccA13P.10.000016
S251P251HcCtcAt33Q.80.000495
S251P251delCCT---220.111111
S251P251HcCtcAt22A0.000774
S251P251HcCtcAt22AD.20.000438
S251P251PccTccA22AY.1020.000053
S251P251HcCtcAt12AY.1200.000037
S251P251HcCTcAC12AY.1200.000037
S251P251LcCtcTt22AY.230.000139
S251P251HcCtcAt22AY.260.000057
S251P251SCctTct22AY.290.000032
S251P251PccTccG22AY.360.000296
S251P251LcCtcTt22AY.360.000296
S251P251LcCtcTt22AY.4.2.10.000298
S251P251LcCtcTt22AY.4.30.001684
S251P251delCCT---22AY.4.50.000215
S251P251LcCtcTt22AY.420.00008
S251P251PccTccA12AY.420.00004
S251P251PccTccC12AY.420.00004
S251P251SCctTct22AY.430.000009
S251P251delCCT---22AY.440.000012
S251P251del1ccTcc-12AY.440.000006
S251P251del1Cct-ct12AY.440.000006
S251P251LcCtcTt22AY.450.000243
S251P251LcCtcTt22AY.46.20.001271
S251P251LcCtcTt22AY.46.40.000329
S251P251PccTccC22AY.46.60.000144
S251P251LcCtcTt22AY.50.000041
S251P251RcCtcGt22AY.50.000041
S251P251LcCtcTt22AY.5.30.000675
S251P251HcCtcAt22AY.500.001599
S251P251del1Cct-ct22AY.520.001629
S251P251HcCtcAt22AY.610.00021
S251P251TCctAct22AY.670.000929
S251P251LcCtcTt22AY.80.001212
S251P251SCctTct22AY.880.001768
S251P251LcCtcTt22AY.920.000575
S251P251LcCtcTt22AY.930.000546
S251P251HcCtcAt22AY.980.000158
S251P251LcCtcTt22AY.99.20.000184
S251P251SCctTct22B0.000256
S251P251FCCtTTt22B.10.000018
S251P251RcCtcGt22B.1.10.000036
S251P251delCCT---22B.1.10.000036
S251P251PccTccC22B.1.10.000036
S251P251HcCtcAt22B.1.1.250.001137
S251P251HcCtcAt22B.1.1.280.000622
S251P251SCctTct22B.1.1.280.000622
S251P251PccTccC22B.1.1.330.000842
S251P251LcCtcTt22B.1.1.4320.002532
S251P251LcCtcTt22B.1.1.470.010695
S251P251LcCtcTt22B.1.1390.001466
S251P251LcCtcTt22B.1.1600.000062
S251P251del1Cct-ct22B.1.1600.000062
S251P251SCctTct22B.1.1770.000026
S251P251LcCtcTt22B.1.1770.000026
S251P251LcCtcTt22B.1.177.600.000437
S251P251SCctTct22B.1.177.730.001133
S251P251TCctAct22B.1.177.810.000379
S251P251delCCT---22B.1.20.000018
S251P251FCCtTTt22B.1.20.000018
S251P251SCctTct22B.1.3510.000059
S251P251TCctAct22B.1.3510.000059
S251P251HcCtcAt22B.1.4090.001563
S251P251delCCT---22B.1.5250.000226
S251P251HcCtcAt22B.1.6100.007092
S251P251HcCtcAt22B.1.617.10.000258
S251P251PccTccC22B.1.617.20.000008
S251P251SCctTct22B.1.6340.006849
S251P251RcCTcGA12C.370.000116
S251P251del2CCt--t12C.370.000116
S251P251del2CCT--N12C.370.000116
S251P251RcCtcGt12C.370.000116
S251P251delCCT---22C.390.037736
S251P251HcCtcAt22P.1.120.000968
S251P251LcCtcTt22P.20.000373
S251P251HcCtcAt22R.10.00018
S251P251TCctAct11A0.000387
S251P251SCctTct11A.10.000282
S251P251delCCT---11A.2.50.000499
S251P251SCctTct11A.2.50.000499
S251P251PccTccC11A.2.50.000499
S251P251CCCtTGt11All0
S251P251ACctGct11All0
S251P251NCCtAAt11All0
S251P251HcCtcAt11AY.1000.000046
S251P251delCCT---11AY.1010.00049
S251P251SCctTct11AY.1020.000027
S251P251LcCtcTt11AY.1020.000027
S251P251PccTccG11AY.1030.000006
S251P251LcCtcTt11AY.1050.000643
S251P251LcCtcTt11AY.1060.000335
S251P251HcCtcAt11AY.1080.001103
S251P251delCCT---11AY.1110.000183
S251P251TCctAct11AY.1130.000142
S251P251delCCT---11AY.1170.000085
S251P251HcCtcAt11AY.1170.000085
S251P251LcCtcTt11AY.1170.000085
S251P251TCctAct11AY.1180.000063
S251P251SCctTct11AY.1180.000063
S251P251delCCT---11AY.1180.000063
S251P251HcCtcAt11AY.1190.000035
S251P251LcCtcTt11AY.1210.000135
S251P251RcCtcGt11AY.160.00038
S251P251LcCtcTt11AY.16.10.00047
S251P251LcCtcTt11AY.200.000039
S251P251PccTccC11AY.200.000039
S251P251RcCtcGt11AY.220.002092
S251P251PccTccC11AY.230.00007
S251P251TCctAct11AY.230.00007
S251P251LcCtcTt11AY.240.000431
S251P251HcCtcAt11AY.240.000431
S251P251PccTccA11AY.260.000028
S251P251PccTccA11AY.270.000065
S251P251LcCtcTt11AY.290.000016
S251P251HcCtcAt11AY.290.000016
S251P251delCCT---11AY.30.00001
S251P251PccTccA11AY.30.00001
S251P251delCCT---11AY.330.000067
S251P251SCctTct11AY.330.000067
S251P251HcCtcAt11AY.340.000097
S251P251PccTccC11AY.390.000025
S251P251SCctTct11AY.390.000025
S251P251RcCtcGt11AY.390.000025
S251P251HcCtcAt11AY.4.50.000107
S251P251LcCtcTt11AY.4.50.000107
S251P251del1CCT-NN11AY.430.000004
S251P251TCctAct11AY.440.000006
S251P251ACctGct11AY.440.000006
S251P251PccTccA11AY.450.000122
S251P251SCctTct11AY.450.000122
S251P251HcCtcAt11AY.460.000104
S251P251LcCtcTt11AY.470.000031
S251P251HcCtcAt11AY.510.000909
S251P251LcCtcTt11AY.530.000288
S251P251HcCtcAt11AY.550.000917
S251P251LcCtcTt11AY.590.00053
S251P251HcCtcAt11AY.60.000041
S251P251LcCtcTt11AY.610.000105
S251P251delCCT---11AY.650.000533
S251P251FCCtTTt11AY.670.000464
S251P251LcCtcTt11AY.680.000274
S251P251LcCtcTt11AY.690.000187
S251P251PccTccA11AY.7.10.000113
S251P251LcCtcTt11AY.7.20.000559
S251P251PccTccA11AY.710.000475
S251P251HcCtcAt11AY.710.000475
S251P251LcCtcTt11AY.720.001361
S251P251SCctTct11AY.740.000116
S251P251LcCtcTt11AY.790.001211
S251P251LcCtcTt11AY.820.001357
S251P251LcCtcTt11AY.90.000068
S251P251HcCtcAt11AY.9.10.000084
S251P251SCctTct11AY.9.10.000084
S251P251HcCtcAt11AY.9.20.000037
S251P251delCCT---11AY.9.20.000037
S251P251LcCtcTt11AY.940.000443
S251P251delCCT---11AY.950.000761
S251P251HcCtcAt11B0.000128
S251P251TCctAct11B0.000128
S251P251LcCtcTt11B0.000128
S251P251NCCtAAt11B.10.000009
S251P251TCctAct11B.1.10.000018
S251P251LcCtcTt11B.1.10.000018
S251P251delCCT---11B.1.1.10.000327
S251P251delCCT---11B.1.1.1590.004673
S251P251LcCtcTt11B.1.1.2140.000055
S251P251PccTccG11B.1.1.2140.000055
S251P251HcCtcAt11B.1.1.2200.001859
S251P251PccTccC11B.1.1.2220.000204
S251P251HcCtcAt11B.1.1.2220.000204
S251P251HcCtcAt11B.1.1.2610.008621
S251P251HcCtcAt11B.1.1.2630.001558
S251P251TCctAct11B.1.1.270.00565
S251P251TCctAct11B.1.1.2840.000107
S251P251LcCtcTt11B.1.1.2910.000742
S251P251LcCtcTt11B.1.1.3060.000438
S251P251LcCtcTt11B.1.1.3170.000412
S251P251LcCtcTt11B.1.1.330.000421
S251P251delCCT---11B.1.1.3480.000796
S251P251SCctTct11B.1.1.3480.000796
S251P251SCctTct11B.1.1.3690.000446
S251P251delCCT---11B.1.1.3720.000689
S251P251LcCtcTt11B.1.1.4610.012048
S251P251LcCtcTt11B.1.1.5230.001563
S251P251delCCT---11B.1.1.5280.004808
S251P251RcCtcGt11B.1.1.70.000001
S251P251LcCtcTt11B.1.110.30.000718
S251P251SCctTct11B.1.130.002375
S251P251SCctTct11B.1.177.100.000878
S251P251LcCtcTt11B.1.177.150.000631
S251P251del1Cct-ct11B.1.177.60.000977
S251P251delCCT---11B.1.177.690.001484
S251P251LcCtcTt11B.1.177.70.000165
S251P251delCCT---11B.1.177.760.002494
S251P251TCctAct11B.1.20.000009
S251P251del1Cct-ct11B.1.20.000009
S251P251SCctTct11B.1.2060.000816
S251P251SCctTct11B.1.2340.000132
S251P251SCctTct11B.1.2390.001221
S251P251HcCtcAt11B.1.2410.000812
S251P251PccTccG11B.1.2430.00007
S251P251LcCtcTt11B.1.2580.000067
S251P251SCctTct11B.1.258.170.000104
S251P251SCctTct11B.1.3370.005587
S251P251delCCT---11B.1.3510.00003
S251P251PccTccC11B.1.360.000146
S251P251del1Cct-ct11B.1.36.10.00114
S251P251PccTccC11B.1.3610.001289
S251P251SCctTct11B.1.3960.000706
S251P251PccTccC11B.1.4260.001009
S251P251delCCT---11B.1.4290.000024
S251P251LcCtcTt11B.1.4290.000024
S251P251LcCtcTt11B.1.4320.011236
S251P251SCctTct11B.1.438.10.000107
S251P251SCctTct11B.1.4620.007246
S251P251SCctTct11B.1.5170.000427
S251P251LcCtcTt11B.1.5250.000113
S251P251TCctAct11B.1.5260.000024
S251P251SCctTct11B.1.5610.000397
S251P251delCCT---11B.1.5610.000397
S251P251HcCtcAt11B.1.5680.001111
S251P251SCctTct11B.1.5690.014493
S251P251LcCtcTt11B.1.5770.000687
S251P251SCctTct11B.1.5820.000491
S251P251SCctTct11B.1.5950.000261
S251P251LcCtcTt11B.1.5950.000261
S251P251LcCtcTt11B.1.5960.000087
S251P251PccTccC11B.1.5960.000087
S251P251del1Cct-ct11B.1.5960.000087
S251P251PccTccA11B.1.5990.00365
S251P251HcCtcAt11B.1.6050.005952
S251P251HcCtcAt11B.1.6090.000479
S251P251TCctAct11B.1.617.10.000129
S251P251del1Cct-ct11B.1.617.20.000004
S251P251delCCT---11B.1.6200.000946
S251P251del2cCTc--11B.1.6210.000089
S251P251TCctAct11B.1.6230.000536
S251P251TCctAct11B.1.6370.000073
S251P251TCctAct11B.600.015873
S251P251TCctAct11C.230.005814
S251P251PccTccA11C.370.000116
S251P251CCCtTGt11C.370.000116
S251P251FCCtTTt11C.370.000116
S251P251TCctAct11D.20.000075
S251P251LcCtcTt11P.10.000016
S251P251del1Cct-ct11P.10.000016
S251P251delCCT---11P.1.10.000318
S251P251HcCtcAt11P.1.130.000898
S251P251SCctTct11P.1.150.000232
S251P251HcCtcAt11P.1.150.000232
S251P251PccTccA11P.1.150.000232
S251P251LcCtcTt11P.1.40.000977
S251P251HcCtcAt11P.20.000187
S251P251SCctTct11Q.80.000165
S251P251del1Cct-ct11R.10.00009
S251P251LcCtcTt11V.10.022727