CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 250

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S250T250InonsynaCtaTt1533515335122310-22312
S250T250deldelACT---77807780122310-22312
S250T250SnonsynActTct157815610.98922722310-22312
S250T250SnonsynaCtaGt1578170.010773122310-22312
S250T250NnonsynaCtaAt955955122310-22312
S250T250TsynacTacC5183690.71235522310-22312
S250T250TsynacTacA5181210.23359122310-22312
S250T250TsynacTacG518280.054054122310-22312
S250T250AnonsynActGct157157122310-22312
S250T250PnonsynActCct59580.98305122310-22312
S250T250PnonsynAcTCcG5910.016949222310-22312
S250T250GnonsynACtGGt1212122310-22312
S250T250del1delacTac-320.66666722310-22312
S250T250del1delaCta-t310.33333322310-22312
S250T250KnonsynaCTaAA22122310-22312
S250T250del2delACT--N210.522310-22312
S250T250del2delaCTa--210.522310-22312
S250T250LnonsynACtCTt11122310-22312
S250T250DnonsynACtGAt11122310-22312

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S250T250IaCtaTt1533515335All0.002933
S250T250IaCtaTt1373813738AY.330.917396
S250T250delACT---77807780All0.001488
S250T250delACT---74017401C.370.858983
S250T250SActTct15611578All0.000299
S250T250SaCtaGt171578All0.000003
S250T250SActTct14871487AY.380.742386
S250T250NaCtaAt955955All0.000183
S250T250NaCtaAt651651AY.40.001013
S250T250IaCtaTt588588AY.40.000915
S250T250TacTacC369518All0.000071
S250T250TacTacA121518All0.000023
S250T250TacTacG28518All0.000005
S250T250delACT---267267C.37.10.698953
S250T250AActGct157157All0.00003
S250T250IaCtaTt151151AY.320.080405
S250T250IaCtaTt146146AY.9.10.012224
S250T250IaCtaTt9999B.1.1.70.000089
S250T250TacTacC7792B.1.20.000678
S250T250TacTacG1392B.1.20.000114
S250T250TacTacA292B.1.20.000018
S250T250IaCtaTt9191AY.4.20.001974
S250T250IaCtaTt8484AY.250.000505
S250T250TacTacA4262B.1.1.70.000038
S250T250TacTacC1962B.1.1.70.000017
S250T250TacTacG162B.1.1.70.000001
S250T250PActCct5859All0.000011
S250T250PAcTCcG159All0
S250T250TacTacC5151B.1.2210.003623
S250T250NaCtaAt4949AY.330.003272
S250T250TacTacC4247B.1.10.000762
S250T250TacTacG547B.1.10.000091
S250T250IaCtaTt4646B.1.617.20.000173
S250T250NaCtaAt4545B.1.5260.001058
S250T250AActGct4242A.2.50.020958
S250T250IaCtaTt3939B.1.5260.000917
S250T250NaCtaAt3535AY.9.20.001286
S250T250PActCct3233B.1.1.70.000029
S250T250PAcTCcG133B.1.1.70.000001
S250T250IaCtaTt2929AY.1030.00018
S250T250TacTacC2929AY.50.000599
S250T250IaCtaTt2727AY.440.000164
S250T250IaCtaTt2525B.1.4290.000588
S250T250IaCtaTt2424B.1.20.000211
S250T250TacTacC2222AY.1030.000137
S250T250IaCtaTt2121AY.690.00392
S250T250SActTct2121B.1.617.20.000079
S250T250NaCtaAt2020B.1.20.000176
S250T250NaCtaAt1919B.1.617.20.000072
S250T250SActTct1818AY.1030.000112
S250T250TacTacA1818B.1.1600.000561
S250T250TacTacA1818B.1.2580.001198
S250T250delACT---1717P.1.150.00395
S250T250TacTacA1516AY.1020.000398
S250T250TacTacC116AY.1020.000027
S250T250NaCtaAt1515AY.1190.00053
S250T250AActGct1515AY.40.000023
S250T250IaCtaTt1515AY.430.000066
S250T250NaCtaAt1515B.1.1.70.000013
S250T250delACT---1515B.1.1.70.000013
S250T250TacTacC815B.1.617.20.00003
S250T250TacTacA715B.1.617.20.000026
S250T250NaCtaAt1313AD.20.002847
S250T250SaCtaGt1313AY.40.00002
S250T250GACtGGt1212All0.000002
S250T250IaCtaTt1212AY.1140.002773
S250T250IaCtaTt1212AY.730.007984
S250T250AActGct1212B.1.5260.000282
S250T250AActGct1212B.1.621.10.00607
S250T250GACtGGt1212C.370.001393
S250T250TacTacA711AY.430.000031
S250T250TacTacC211AY.430.000009
S250T250TacTacG211AY.430.000009
S250T250IaCtaTt1111B.10.000101
S250T250TacTacC910AY.40.000014
S250T250TacTacA110AY.40.000002
S250T250IaCtaTt1010AY.450.001217
S250T250TacTacC1010B.1.5960.000871
S250T250IaCtaTt99AY.30.00009
S250T250TacTacC89AY.440.000049
S250T250TacTacG19AY.440.000006
S250T250NaCtaAt99AY.450.001095
S250T250delACT---99B.10.000082
S250T250AActGct99B.1.1.330.003788
S250T250TacTacC88AY.200.000311
S250T250NaCtaAt88B.1.1.4160.00724
S250T250IaCtaTt77AY.1060.002344
S250T250AActGct77AY.130.001127
S250T250IaCtaTt77AY.390.000173
S250T250IaCtaTt77AY.39.10.000277
S250T250NaCtaAt77AY.4.20.000152
S250T250delACT---77AY.430.000031
S250T250TacTacC77AY.46.20.004447
S250T250TacTacC67B.10.000055
S250T250TacTacA17B.10.000009
S250T250SActTct77B.1.177.570.001967
S250T250IaCtaTt77B.1.2210.000497
S250T250AActGct77C.370.000812
S250T250PActCct77N.50.012367
S250T250IaCtaTt66AY.1170.000507
S250T250AActGct66B.10.000055
S250T250IaCtaTt66B.1.1.4340.002091
S250T250TacTacC56B.1.1770.000066
S250T250TacTacA16B.1.1770.000013
S250T250IaCtaTt66P.10.000095
S250T250delACT---66P.10.000095
S250T250IaCtaTt55AY.1200.000186
S250T250IaCtaTt55AY.130.000805
S250T250IaCtaTt55AY.650.002665
S250T250IaCtaTt55AY.9.20.000184
S250T250IaCtaTt55B.1.10.000091
S250T250TacTacC55B.1.177.350.003455
S250T250TacTacC55B.1.2430.000348
S250T250TacTacC55B.1.5260.000118
S250T250AActGct55B.1.617.20.000019
S250T250delACT---55B.1.617.20.000019
S250T250delACT---55B.1.6210.000443
S250T250NaCtaAt55P.10.000079
S250T250IaCtaTt55Q.30.000725
S250T250delACT---44AY.250.000024
S250T250delACT---44AY.290.000063
S250T250TacTacC34AY.4.20.000065
S250T250TacTacG14AY.4.20.000022
S250T250NaCtaAt44AY.430.000018
S250T250NaCtaAt44AY.440.000024
S250T250NaCtaAt44AY.460.000416
S250T250IaCtaTt44AY.50.000083
S250T250AActGct44AY.9.10.000335
S250T250NaCtaAt44B.1.1.3690.001785
S250T250AActGct44B.1.617.10.000516
S250T250del1acTac-23All0
S250T250del1aCta-t13All0
S250T250delACT---33AY.1020.00008
S250T250NaCtaAt33AY.1030.000019
S250T250NaCtaAt33AY.1200.000112
S250T250IaCtaTt33AY.290.000047
S250T250TacTacC33AY.30.00003
S250T250NaCtaAt33AY.30.00003
S250T250IaCtaTt33AY.340.000291
S250T250PActCct33AY.40.000005
S250T250SActTct33AY.430.000013
S250T250IaCtaTt33AY.46.60.000217
S250T250IaCtaTt33AY.500.002398
S250T250SActTct33AY.650.001599
S250T250AActGct33AY.98.10.000145
S250T250NaCtaAt33B.1.10.000054
S250T250IaCtaTt33B.1.1.500.002037
S250T250delACT---33B.1.1770.00004
S250T250NaCtaAt33B.1.2430.000209
S250T250IaCtaTt33B.1.258.170.000312
S250T250IaCtaTt33B.1.3510.000089
S250T250TacTacC33B.1.6370.000219
S250T250delACT---220.111111
S250T250IaCtaTt22AB.10.016393
S250T250KaCTaAA22All0
S250T250del2ACT--N12All0
S250T250del2aCTa--12All0
S250T250SActTct22AY.100.00106
S250T250IaCtaTt22AY.1020.000053
S250T250NaCtaAt22AY.200.000078
S250T250IaCtaTt22AY.200.000078
S250T250AActGct22AY.230.000139
S250T250IaCtaTt22AY.230.000139
S250T250TacTacC22AY.250.000012
S250T250TacTacC22AY.290.000032
S250T250NaCtaAt22AY.390.000049
S250T250SActTct22AY.390.000049
S250T250IaCtaTt22AY.4.50.000215
S250T250delACT---22AY.4.50.000215
S250T250IaCtaTt22AY.420.00008
S250T250delACT---22AY.440.000012
S250T250SActTct12AY.440.000006
S250T250SaCtaGt12AY.440.000006
S250T250IaCtaTt22AY.460.000208
S250T250NaCtaAt22AY.50.000041
S250T250IaCtaTt22AY.5.30.000675
S250T250TacTacC22AY.540.000191
S250T250AActGct22AY.60.000082
S250T250SActTct22AY.610.00021
S250T250SActTct22AY.75.10.000361
S250T250TacTacC22AY.90.000135
S250T250IaCtaTt22AY.920.000575
S250T250TacTacC22AY.980.000158
S250T250NaCtaAt22B.10.000018
S250T250delACT---22B.1.10.000036
S250T250AActGct22B.1.1.370.000386
S250T250AActGct22B.1.1.70.000002
S250T250IaCtaTt22B.1.1600.000062
S250T250NaCtaAt22B.1.1770.000026
S250T250IaCtaTt22B.1.177.540.001213
S250T250delACT---22B.1.20.000018
S250T250AActGct22B.1.20.000018
S250T250TacTacC22B.1.2410.001623
S250T250PActCct22B.1.2430.000139
S250T250TacTacC22B.1.2560.034483
S250T250TacTacC22B.1.3510.000059
S250T250PActCct22B.1.438.10.000215
S250T250delACT---22B.1.5250.000226
S250T250PActCct22B.1.575.10.004878
S250T250AActGct22B.1.6210.000177
S250T250IaCtaTt22B.1.6210.000177
S250T250delACT---22C.390.037736
S250T250TacTacC12P.10.000016
S250T250TacTacG12P.10.000016
S250T250NaCtaAt22R.10.00018
S250T250TacTacA11A.20.000662
S250T250delACT---11A.2.50.000499
S250T250DACtGAt11All0
S250T250LACtCTt11All0
S250T250IaCtaTt11AY.1000.000046
S250T250delACT---11AY.1010.00049
S250T250AActGct11AY.1020.000027
S250T250TacTacC11AY.1100.000113
S250T250SActTct11AY.1100.000113
S250T250delACT---11AY.1110.000183
S250T250TacTacA11AY.1140.000231
S250T250SActTct11AY.1140.000231
S250T250AActGct11AY.1160.000287
S250T250IaCtaTt11AY.1160.000287
S250T250delACT---11AY.1170.000085
S250T250delACT---11AY.1180.000063
S250T250IaCtaTt11AY.1180.000063
S250T250TacTacA11AY.1180.000063
S250T250PActCct11AY.1190.000035
S250T250IaCtaTt11AY.1210.000135
S250T250TacTacA11AY.1210.000135
S250T250LACtCTt11AY.1210.000135
S250T250IaCtaTt11AY.140.000088
S250T250SActTct11AY.16.10.00047
S250T250TacTacC11AY.230.00007
S250T250AActGct11AY.23.10.000417
S250T250TacTacA11AY.23.10.000417
S250T250SActTct11AY.250.000006
S250T250AActGct11AY.260.000028
S250T250IaCtaTt11AY.260.000028
S250T250AActGct11AY.270.000065
S250T250delACT---11AY.30.00001
S250T250AActGct11AY.30.00001
S250T250AActGct11AY.300.000396
S250T250NaCtaAt11AY.320.000532
S250T250PActCct11AY.330.000067
S250T250del1aCta-t11AY.330.000067
S250T250del2aCTa--11AY.330.000067
S250T250NaCtaAt11AY.360.000148
S250T250TacTacG11AY.39.10.00004
S250T250AActGct11AY.4.2.10.000149
S250T250TacTacC11AY.420.00004
S250T250AActGct11AY.420.00004
S250T250NaCtaAt11AY.420.00004
S250T250AActGct11AY.430.000004
S250T250PActCct11AY.440.000006
S250T250del1acTac-11AY.440.000006
S250T250AActGct11AY.440.000006
S250T250SActTct11AY.450.000122
S250T250SActTct11AY.460.000104
S250T250IaCtaTt11AY.46.20.000635
S250T250IaCtaTt11AY.46.40.000165
S250T250NaCtaAt11AY.46.60.000072
S250T250IaCtaTt11AY.470.000031
S250T250TacTacC11AY.480.000465
S250T250SActTct11AY.520.000814
S250T250PActCct11AY.540.000095
S250T250IaCtaTt11AY.580.000907
S250T250TacTacC11AY.60.000041
S250T250TacTacA11AY.610.000105
S250T250SActTct11AY.620.000436
S250T250IaCtaTt11AY.620.000436
S250T250delACT---11AY.650.000533
S250T250IaCtaTt11AY.70.000196
S250T250TacTacC11AY.70.000196
S250T250TacTacG11AY.700.000209
S250T250SActTct11AY.740.000116
S250T250IaCtaTt11AY.740.000116
S250T250TacTacC11AY.740.000116
S250T250TacTacG11AY.750.000056
S250T250SActTct11AY.750.000056
S250T250IaCtaTt11AY.780.001541
S250T250IaCtaTt11AY.840.000437
S250T250TacTacA11AY.840.000437
S250T250IaCtaTt11AY.850.000427
S250T250PActCct11AY.850.000427
S250T250SActTct11AY.850.000427
S250T250AActGct11AY.90.000068
S250T250NaCtaAt11AY.90.000068
S250T250TacTacC11AY.9.10.000084
S250T250delACT---11AY.9.20.000037
S250T250TacTacC11AY.920.000287
S250T250NaCtaAt11AY.940.000443
S250T250delACT---11AY.950.000761
S250T250IaCtaTt11AY.960.002075
S250T250IaCtaTt11AY.990.001049
S250T250SActTct11AY.990.001049
S250T250NaCtaAt11B0.000128
S250T250AActGct11B0.000128
S250T250TacTacC11B0.000128
S250T250DACtGAt11B.10.000009
S250T250SaCtaGt11B.10.000009
S250T250PActCct11B.10.000009
S250T250delACT---11B.1.1.10.000327
S250T250delACT---11B.1.1.1590.004673
S250T250TacTacC11B.1.1.2220.000204
S250T250NaCtaAt11B.1.1.280.000311
S250T250IaCtaTt11B.1.1.3440.010753
S250T250delACT---11B.1.1.3480.000796
S250T250delACT---11B.1.1.3720.000689
S250T250delACT---11B.1.1.5280.004808
S250T250AActGct11B.1.1.630.000386
S250T250AActGct11B.1.1600.000031
S250T250KaCTaAA11B.1.160.100.008065
S250T250NaCtaAt11B.1.160.100.008065
S250T250TacTacA11B.1.160.100.008065
S250T250IaCtaTt11B.1.1770.000013
S250T250AActGct11B.1.177.350.000691
S250T250delACT---11B.1.177.690.001484
S250T250TacTacC11B.1.177.70.000165
S250T250delACT---11B.1.177.760.002494
S250T250NaCtaAt11B.1.177.790.002342
S250T250KaCTaAA11B.1.20.000009
S250T250AActGct11B.1.2060.000816
S250T250IaCtaTt11B.1.2320.000537
S250T250SaCtaGt11B.1.2340.000132
S250T250AActGct11B.1.2400.000216
S250T250AActGct11B.1.2410.000812
S250T250IaCtaTt11B.1.2430.00007
S250T250NaCtaAt11B.1.2580.000067
S250T250PActCct11B.1.258.170.000104
S250T250IaCtaTt11B.1.3110.000275
S250T250TacTacC11B.1.3320.003497
S250T250SActTct11B.1.3510.00003
S250T250delACT---11B.1.3510.00003
S250T250NaCtaAt11B.1.360.000146
S250T250NaCtaAt11B.1.36.220.001208
S250T250IaCtaTt11B.1.3690.000285
S250T250TacTacC11B.1.3750.00082
S250T250TacTacC11B.1.3780.006849
S250T250NaCtaAt11B.1.3950.007042
S250T250NaCtaAt11B.1.3990.001934
S250T250del1acTac-11B.1.4290.000024
S250T250NaCtaAt11B.1.4290.000024
S250T250TacTacC11B.1.4290.000024
S250T250NaCtaAt11B.1.4700.001404
S250T250NaCtaAt11B.1.5170.000427
S250T250PActCct11B.1.5260.000024
S250T250delACT---11B.1.5610.000397
S250T250TacTacC11B.1.5800.004065
S250T250TacTacC11B.1.5900.004545
S250T250TacTacC11B.1.5950.000261
S250T250PActCct11B.1.5960.000087
S250T250IaCtaTt11B.1.5960.000087
S250T250IaCtaTt11B.1.617.10.000129
S250T250TacTacC11B.1.6190.000871
S250T250delACT---11B.1.6200.000946
S250T250TacTacC11B.1.6210.000089
S250T250IaCtaTt11B.1.6370.000073
S250T250IaCtaTt11B.1.780.008547
S250T250TacTacC11B.1.940.027027
S250T250NaCtaAt11B.40.002208
S250T250TacTacC11B.400.000364
S250T250NaCtaAt11C.160.00106
S250T250TacTacG11C.36.30.000567
S250T250SaCtaGt11C.370.000116
S250T250TacTacA11D.20.000075
S250T250IaCtaTt11D.20.000075
S250T250NaCtaAt11D.20.000075
S250T250delACT---11P.1.10.000318
S250T250del2ACT--N11P.1.150.000232
S250T250IaCtaTt11P.1.150.000232
S250T250TacTacC11P.1.30.034483
S250T250IaCtaTt11P.30.001595
S250T250IaCtaTt11Q.10.000126
S250T250PActCct11Q.10.000126
S250T250IaCtaTt11U.30.003861