CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 250

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	250	T250I		nonsyn	aCt	aTt	15335	15335	1	22310-22312
S	250	T250del		del	ACT	---	7780	7780	1	22310-22312
S	250	T250S		nonsyn	Act	Tct	1578	1561	0.989227	22310-22312
S	250	T250S		nonsyn	aCt	aGt	1578	17	0.0107731	22310-22312
S	250	T250N		nonsyn	aCt	aAt	955	955	1	22310-22312
S	250	T250T		syn	acT	acC	518	369	0.712355	22310-22312
S	250	T250T		syn	acT	acA	518	121	0.233591	22310-22312
S	250	T250T		syn	acT	acG	518	28	0.0540541	22310-22312
S	250	T250A		nonsyn	Act	Gct	157	157	1	22310-22312
S	250	T250P		nonsyn	Act	Cct	59	58	0.983051	22310-22312
S	250	T250P		nonsyn	AcT	CcG	59	1	0.0169492	22310-22312
S	250	T250G		nonsyn	ACt	GGt	12	12	1	22310-22312
S	250	T250del1		del	acT	ac-	3	2	0.666667	22310-22312
S	250	T250del1		del	aCt	a-t	3	1	0.333333	22310-22312
S	250	T250K		nonsyn	aCT	aAA	2	2	1	22310-22312
S	250	T250del2		del	ACT	--N	2	1	0.5	22310-22312
S	250	T250del2		del	aCT	a--	2	1	0.5	22310-22312
S	250	T250L		nonsyn	ACt	CTt	1	1	1	22310-22312
S	250	T250D		nonsyn	ACt	GAt	1	1	1	22310-22312

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	250	T250I	aCt	aTt	15335	15335	All	0.002933
S	250	T250I	aCt	aTt	13738	13738	AY.33	0.917396
S	250	T250del	ACT	---	7780	7780	All	0.001488
S	250	T250del	ACT	---	7401	7401	C.37	0.858983
S	250	T250S	Act	Tct	1561	1578	All	0.000299
S	250	T250S	aCt	aGt	17	1578	All	0.000003
S	250	T250S	Act	Tct	1487	1487	AY.38	0.742386
S	250	T250N	aCt	aAt	955	955	All	0.000183
S	250	T250N	aCt	aAt	651	651	AY.4	0.001013
S	250	T250I	aCt	aTt	588	588	AY.4	0.000915
S	250	T250T	acT	acC	369	518	All	0.000071
S	250	T250T	acT	acA	121	518	All	0.000023
S	250	T250T	acT	acG	28	518	All	0.000005
S	250	T250del	ACT	---	267	267	C.37.1	0.698953
S	250	T250A	Act	Gct	157	157	All	0.00003
S	250	T250I	aCt	aTt	151	151	AY.32	0.080405
S	250	T250I	aCt	aTt	146	146	AY.9.1	0.012224
S	250	T250I	aCt	aTt	99	99	B.1.1.7	0.000089
S	250	T250T	acT	acC	77	92	B.1.2	0.000678
S	250	T250T	acT	acG	13	92	B.1.2	0.000114
S	250	T250T	acT	acA	2	92	B.1.2	0.000018
S	250	T250I	aCt	aTt	91	91	AY.4.2	0.001974
S	250	T250I	aCt	aTt	84	84	AY.25	0.000505
S	250	T250T	acT	acA	42	62	B.1.1.7	0.000038
S	250	T250T	acT	acC	19	62	B.1.1.7	0.000017
S	250	T250T	acT	acG	1	62	B.1.1.7	0.000001
S	250	T250P	Act	Cct	58	59	All	0.000011
S	250	T250P	AcT	CcG	1	59	All	0
S	250	T250T	acT	acC	51	51	B.1.221	0.003623
S	250	T250N	aCt	aAt	49	49	AY.33	0.003272
S	250	T250T	acT	acC	42	47	B.1.1	0.000762
S	250	T250T	acT	acG	5	47	B.1.1	0.000091
S	250	T250I	aCt	aTt	46	46	B.1.617.2	0.000173
S	250	T250N	aCt	aAt	45	45	B.1.526	0.001058
S	250	T250A	Act	Gct	42	42	A.2.5	0.020958
S	250	T250I	aCt	aTt	39	39	B.1.526	0.000917
S	250	T250N	aCt	aAt	35	35	AY.9.2	0.001286
S	250	T250P	Act	Cct	32	33	B.1.1.7	0.000029
S	250	T250P	AcT	CcG	1	33	B.1.1.7	0.000001
S	250	T250I	aCt	aTt	29	29	AY.103	0.00018
S	250	T250T	acT	acC	29	29	AY.5	0.000599
S	250	T250I	aCt	aTt	27	27	AY.44	0.000164
S	250	T250I	aCt	aTt	25	25	B.1.429	0.000588
S	250	T250I	aCt	aTt	24	24	B.1.2	0.000211
S	250	T250T	acT	acC	22	22	AY.103	0.000137
S	250	T250I	aCt	aTt	21	21	AY.69	0.00392
S	250	T250S	Act	Tct	21	21	B.1.617.2	0.000079
S	250	T250N	aCt	aAt	20	20	B.1.2	0.000176
S	250	T250N	aCt	aAt	19	19	B.1.617.2	0.000072
S	250	T250S	Act	Tct	18	18	AY.103	0.000112
S	250	T250T	acT	acA	18	18	B.1.160	0.000561
S	250	T250T	acT	acA	18	18	B.1.258	0.001198
S	250	T250del	ACT	---	17	17	P.1.15	0.00395
S	250	T250T	acT	acA	15	16	AY.102	0.000398
S	250	T250T	acT	acC	1	16	AY.102	0.000027
S	250	T250N	aCt	aAt	15	15	AY.119	0.00053
S	250	T250A	Act	Gct	15	15	AY.4	0.000023
S	250	T250I	aCt	aTt	15	15	AY.43	0.000066
S	250	T250N	aCt	aAt	15	15	B.1.1.7	0.000013
S	250	T250del	ACT	---	15	15	B.1.1.7	0.000013
S	250	T250T	acT	acC	8	15	B.1.617.2	0.00003
S	250	T250T	acT	acA	7	15	B.1.617.2	0.000026
S	250	T250N	aCt	aAt	13	13	AD.2	0.002847
S	250	T250S	aCt	aGt	13	13	AY.4	0.00002
S	250	T250G	ACt	GGt	12	12	All	0.000002
S	250	T250I	aCt	aTt	12	12	AY.114	0.002773
S	250	T250I	aCt	aTt	12	12	AY.73	0.007984
S	250	T250A	Act	Gct	12	12	B.1.526	0.000282
S	250	T250A	Act	Gct	12	12	B.1.621.1	0.00607
S	250	T250G	ACt	GGt	12	12	C.37	0.001393
S	250	T250T	acT	acA	7	11	AY.43	0.000031
S	250	T250T	acT	acC	2	11	AY.43	0.000009
S	250	T250T	acT	acG	2	11	AY.43	0.000009
S	250	T250I	aCt	aTt	11	11	B.1	0.000101
S	250	T250T	acT	acC	9	10	AY.4	0.000014
S	250	T250T	acT	acA	1	10	AY.4	0.000002
S	250	T250I	aCt	aTt	10	10	AY.45	0.001217
S	250	T250T	acT	acC	10	10	B.1.596	0.000871
S	250	T250I	aCt	aTt	9	9	AY.3	0.00009
S	250	T250T	acT	acC	8	9	AY.44	0.000049
S	250	T250T	acT	acG	1	9	AY.44	0.000006
S	250	T250N	aCt	aAt	9	9	AY.45	0.001095
S	250	T250del	ACT	---	9	9	B.1	0.000082
S	250	T250A	Act	Gct	9	9	B.1.1.33	0.003788
S	250	T250T	acT	acC	8	8	AY.20	0.000311
S	250	T250N	aCt	aAt	8	8	B.1.1.416	0.00724
S	250	T250I	aCt	aTt	7	7	AY.106	0.002344
S	250	T250A	Act	Gct	7	7	AY.13	0.001127
S	250	T250I	aCt	aTt	7	7	AY.39	0.000173
S	250	T250I	aCt	aTt	7	7	AY.39.1	0.000277
S	250	T250N	aCt	aAt	7	7	AY.4.2	0.000152
S	250	T250del	ACT	---	7	7	AY.43	0.000031
S	250	T250T	acT	acC	7	7	AY.46.2	0.004447
S	250	T250T	acT	acC	6	7	B.1	0.000055
S	250	T250T	acT	acA	1	7	B.1	0.000009
S	250	T250S	Act	Tct	7	7	B.1.177.57	0.001967
S	250	T250I	aCt	aTt	7	7	B.1.221	0.000497
S	250	T250A	Act	Gct	7	7	C.37	0.000812
S	250	T250P	Act	Cct	7	7	N.5	0.012367
S	250	T250I	aCt	aTt	6	6	AY.117	0.000507
S	250	T250A	Act	Gct	6	6	B.1	0.000055
S	250	T250I	aCt	aTt	6	6	B.1.1.434	0.002091
S	250	T250T	acT	acC	5	6	B.1.177	0.000066
S	250	T250T	acT	acA	1	6	B.1.177	0.000013
S	250	T250I	aCt	aTt	6	6	P.1	0.000095
S	250	T250del	ACT	---	6	6	P.1	0.000095
S	250	T250I	aCt	aTt	5	5	AY.120	0.000186
S	250	T250I	aCt	aTt	5	5	AY.13	0.000805
S	250	T250I	aCt	aTt	5	5	AY.65	0.002665
S	250	T250I	aCt	aTt	5	5	AY.9.2	0.000184
S	250	T250I	aCt	aTt	5	5	B.1.1	0.000091
S	250	T250T	acT	acC	5	5	B.1.177.35	0.003455
S	250	T250T	acT	acC	5	5	B.1.243	0.000348
S	250	T250T	acT	acC	5	5	B.1.526	0.000118
S	250	T250A	Act	Gct	5	5	B.1.617.2	0.000019
S	250	T250del	ACT	---	5	5	B.1.617.2	0.000019
S	250	T250del	ACT	---	5	5	B.1.621	0.000443
S	250	T250N	aCt	aAt	5	5	P.1	0.000079
S	250	T250I	aCt	aTt	5	5	Q.3	0.000725
S	250	T250del	ACT	---	4	4	AY.25	0.000024
S	250	T250del	ACT	---	4	4	AY.29	0.000063
S	250	T250T	acT	acC	3	4	AY.4.2	0.000065
S	250	T250T	acT	acG	1	4	AY.4.2	0.000022
S	250	T250N	aCt	aAt	4	4	AY.43	0.000018
S	250	T250N	aCt	aAt	4	4	AY.44	0.000024
S	250	T250N	aCt	aAt	4	4	AY.46	0.000416
S	250	T250I	aCt	aTt	4	4	AY.5	0.000083
S	250	T250A	Act	Gct	4	4	AY.9.1	0.000335
S	250	T250N	aCt	aAt	4	4	B.1.1.369	0.001785
S	250	T250A	Act	Gct	4	4	B.1.617.1	0.000516
S	250	T250del1	acT	ac-	2	3	All	0
S	250	T250del1	aCt	a-t	1	3	All	0
S	250	T250del	ACT	---	3	3	AY.102	0.00008
S	250	T250N	aCt	aAt	3	3	AY.103	0.000019
S	250	T250N	aCt	aAt	3	3	AY.120	0.000112
S	250	T250I	aCt	aTt	3	3	AY.29	0.000047
S	250	T250T	acT	acC	3	3	AY.3	0.00003
S	250	T250N	aCt	aAt	3	3	AY.3	0.00003
S	250	T250I	aCt	aTt	3	3	AY.34	0.000291
S	250	T250P	Act	Cct	3	3	AY.4	0.000005
S	250	T250S	Act	Tct	3	3	AY.43	0.000013
S	250	T250I	aCt	aTt	3	3	AY.46.6	0.000217
S	250	T250I	aCt	aTt	3	3	AY.50	0.002398
S	250	T250S	Act	Tct	3	3	AY.65	0.001599
S	250	T250A	Act	Gct	3	3	AY.98.1	0.000145
S	250	T250N	aCt	aAt	3	3	B.1.1	0.000054
S	250	T250I	aCt	aTt	3	3	B.1.1.50	0.002037
S	250	T250del	ACT	---	3	3	B.1.177	0.00004
S	250	T250N	aCt	aAt	3	3	B.1.243	0.000209
S	250	T250I	aCt	aTt	3	3	B.1.258.17	0.000312
S	250	T250I	aCt	aTt	3	3	B.1.351	0.000089
S	250	T250T	acT	acC	3	3	B.1.637	0.000219
S	250	T250del	ACT	---	2	2		0.111111
S	250	T250I	aCt	aTt	2	2	AB.1	0.016393
S	250	T250K	aCT	aAA	2	2	All	0
S	250	T250del2	ACT	--N	1	2	All	0
S	250	T250del2	aCT	a--	1	2	All	0
S	250	T250S	Act	Tct	2	2	AY.10	0.00106
S	250	T250I	aCt	aTt	2	2	AY.102	0.000053
S	250	T250N	aCt	aAt	2	2	AY.20	0.000078
S	250	T250I	aCt	aTt	2	2	AY.20	0.000078
S	250	T250A	Act	Gct	2	2	AY.23	0.000139
S	250	T250I	aCt	aTt	2	2	AY.23	0.000139
S	250	T250T	acT	acC	2	2	AY.25	0.000012
S	250	T250T	acT	acC	2	2	AY.29	0.000032
S	250	T250N	aCt	aAt	2	2	AY.39	0.000049
S	250	T250S	Act	Tct	2	2	AY.39	0.000049
S	250	T250I	aCt	aTt	2	2	AY.4.5	0.000215
S	250	T250del	ACT	---	2	2	AY.4.5	0.000215
S	250	T250I	aCt	aTt	2	2	AY.42	0.00008
S	250	T250del	ACT	---	2	2	AY.44	0.000012
S	250	T250S	Act	Tct	1	2	AY.44	0.000006
S	250	T250S	aCt	aGt	1	2	AY.44	0.000006
S	250	T250I	aCt	aTt	2	2	AY.46	0.000208
S	250	T250N	aCt	aAt	2	2	AY.5	0.000041
S	250	T250I	aCt	aTt	2	2	AY.5.3	0.000675
S	250	T250T	acT	acC	2	2	AY.54	0.000191
S	250	T250A	Act	Gct	2	2	AY.6	0.000082
S	250	T250S	Act	Tct	2	2	AY.61	0.00021
S	250	T250S	Act	Tct	2	2	AY.75.1	0.000361
S	250	T250T	acT	acC	2	2	AY.9	0.000135
S	250	T250I	aCt	aTt	2	2	AY.92	0.000575
S	250	T250T	acT	acC	2	2	AY.98	0.000158
S	250	T250N	aCt	aAt	2	2	B.1	0.000018
S	250	T250del	ACT	---	2	2	B.1.1	0.000036
S	250	T250A	Act	Gct	2	2	B.1.1.37	0.000386
S	250	T250A	Act	Gct	2	2	B.1.1.7	0.000002
S	250	T250I	aCt	aTt	2	2	B.1.160	0.000062
S	250	T250N	aCt	aAt	2	2	B.1.177	0.000026
S	250	T250I	aCt	aTt	2	2	B.1.177.54	0.001213
S	250	T250del	ACT	---	2	2	B.1.2	0.000018
S	250	T250A	Act	Gct	2	2	B.1.2	0.000018
S	250	T250T	acT	acC	2	2	B.1.241	0.001623
S	250	T250P	Act	Cct	2	2	B.1.243	0.000139
S	250	T250T	acT	acC	2	2	B.1.256	0.034483
S	250	T250T	acT	acC	2	2	B.1.351	0.000059
S	250	T250P	Act	Cct	2	2	B.1.438.1	0.000215
S	250	T250del	ACT	---	2	2	B.1.525	0.000226
S	250	T250P	Act	Cct	2	2	B.1.575.1	0.004878
S	250	T250A	Act	Gct	2	2	B.1.621	0.000177
S	250	T250I	aCt	aTt	2	2	B.1.621	0.000177
S	250	T250del	ACT	---	2	2	C.39	0.037736
S	250	T250T	acT	acC	1	2	P.1	0.000016
S	250	T250T	acT	acG	1	2	P.1	0.000016
S	250	T250N	aCt	aAt	2	2	R.1	0.00018
S	250	T250T	acT	acA	1	1	A.2	0.000662
S	250	T250del	ACT	---	1	1	A.2.5	0.000499
S	250	T250D	ACt	GAt	1	1	All	0
S	250	T250L	ACt	CTt	1	1	All	0
S	250	T250I	aCt	aTt	1	1	AY.100	0.000046
S	250	T250del	ACT	---	1	1	AY.101	0.00049
S	250	T250A	Act	Gct	1	1	AY.102	0.000027
S	250	T250T	acT	acC	1	1	AY.110	0.000113
S	250	T250S	Act	Tct	1	1	AY.110	0.000113
S	250	T250del	ACT	---	1	1	AY.111	0.000183
S	250	T250T	acT	acA	1	1	AY.114	0.000231
S	250	T250S	Act	Tct	1	1	AY.114	0.000231
S	250	T250A	Act	Gct	1	1	AY.116	0.000287
S	250	T250I	aCt	aTt	1	1	AY.116	0.000287
S	250	T250del	ACT	---	1	1	AY.117	0.000085
S	250	T250del	ACT	---	1	1	AY.118	0.000063
S	250	T250I	aCt	aTt	1	1	AY.118	0.000063
S	250	T250T	acT	acA	1	1	AY.118	0.000063
S	250	T250P	Act	Cct	1	1	AY.119	0.000035
S	250	T250I	aCt	aTt	1	1	AY.121	0.000135
S	250	T250T	acT	acA	1	1	AY.121	0.000135
S	250	T250L	ACt	CTt	1	1	AY.121	0.000135
S	250	T250I	aCt	aTt	1	1	AY.14	0.000088
S	250	T250S	Act	Tct	1	1	AY.16.1	0.00047
S	250	T250T	acT	acC	1	1	AY.23	0.00007
S	250	T250A	Act	Gct	1	1	AY.23.1	0.000417
S	250	T250T	acT	acA	1	1	AY.23.1	0.000417
S	250	T250S	Act	Tct	1	1	AY.25	0.000006
S	250	T250A	Act	Gct	1	1	AY.26	0.000028
S	250	T250I	aCt	aTt	1	1	AY.26	0.000028
S	250	T250A	Act	Gct	1	1	AY.27	0.000065
S	250	T250del	ACT	---	1	1	AY.3	0.00001
S	250	T250A	Act	Gct	1	1	AY.3	0.00001
S	250	T250A	Act	Gct	1	1	AY.30	0.000396
S	250	T250N	aCt	aAt	1	1	AY.32	0.000532
S	250	T250P	Act	Cct	1	1	AY.33	0.000067
S	250	T250del1	aCt	a-t	1	1	AY.33	0.000067
S	250	T250del2	aCT	a--	1	1	AY.33	0.000067
S	250	T250N	aCt	aAt	1	1	AY.36	0.000148
S	250	T250T	acT	acG	1	1	AY.39.1	0.00004
S	250	T250A	Act	Gct	1	1	AY.4.2.1	0.000149
S	250	T250T	acT	acC	1	1	AY.42	0.00004
S	250	T250A	Act	Gct	1	1	AY.42	0.00004
S	250	T250N	aCt	aAt	1	1	AY.42	0.00004
S	250	T250A	Act	Gct	1	1	AY.43	0.000004
S	250	T250P	Act	Cct	1	1	AY.44	0.000006
S	250	T250del1	acT	ac-	1	1	AY.44	0.000006
S	250	T250A	Act	Gct	1	1	AY.44	0.000006
S	250	T250S	Act	Tct	1	1	AY.45	0.000122
S	250	T250S	Act	Tct	1	1	AY.46	0.000104
S	250	T250I	aCt	aTt	1	1	AY.46.2	0.000635
S	250	T250I	aCt	aTt	1	1	AY.46.4	0.000165
S	250	T250N	aCt	aAt	1	1	AY.46.6	0.000072
S	250	T250I	aCt	aTt	1	1	AY.47	0.000031
S	250	T250T	acT	acC	1	1	AY.48	0.000465
S	250	T250S	Act	Tct	1	1	AY.52	0.000814
S	250	T250P	Act	Cct	1	1	AY.54	0.000095
S	250	T250I	aCt	aTt	1	1	AY.58	0.000907
S	250	T250T	acT	acC	1	1	AY.6	0.000041
S	250	T250T	acT	acA	1	1	AY.61	0.000105
S	250	T250S	Act	Tct	1	1	AY.62	0.000436
S	250	T250I	aCt	aTt	1	1	AY.62	0.000436
S	250	T250del	ACT	---	1	1	AY.65	0.000533
S	250	T250I	aCt	aTt	1	1	AY.7	0.000196
S	250	T250T	acT	acC	1	1	AY.7	0.000196
S	250	T250T	acT	acG	1	1	AY.70	0.000209
S	250	T250S	Act	Tct	1	1	AY.74	0.000116
S	250	T250I	aCt	aTt	1	1	AY.74	0.000116
S	250	T250T	acT	acC	1	1	AY.74	0.000116
S	250	T250T	acT	acG	1	1	AY.75	0.000056
S	250	T250S	Act	Tct	1	1	AY.75	0.000056
S	250	T250I	aCt	aTt	1	1	AY.78	0.001541
S	250	T250I	aCt	aTt	1	1	AY.84	0.000437
S	250	T250T	acT	acA	1	1	AY.84	0.000437
S	250	T250I	aCt	aTt	1	1	AY.85	0.000427
S	250	T250P	Act	Cct	1	1	AY.85	0.000427
S	250	T250S	Act	Tct	1	1	AY.85	0.000427
S	250	T250A	Act	Gct	1	1	AY.9	0.000068
S	250	T250N	aCt	aAt	1	1	AY.9	0.000068
S	250	T250T	acT	acC	1	1	AY.9.1	0.000084
S	250	T250del	ACT	---	1	1	AY.9.2	0.000037
S	250	T250T	acT	acC	1	1	AY.92	0.000287
S	250	T250N	aCt	aAt	1	1	AY.94	0.000443
S	250	T250del	ACT	---	1	1	AY.95	0.000761
S	250	T250I	aCt	aTt	1	1	AY.96	0.002075
S	250	T250I	aCt	aTt	1	1	AY.99	0.001049
S	250	T250S	Act	Tct	1	1	AY.99	0.001049
S	250	T250N	aCt	aAt	1	1	B	0.000128
S	250	T250A	Act	Gct	1	1	B	0.000128
S	250	T250T	acT	acC	1	1	B	0.000128
S	250	T250D	ACt	GAt	1	1	B.1	0.000009
S	250	T250S	aCt	aGt	1	1	B.1	0.000009
S	250	T250P	Act	Cct	1	1	B.1	0.000009
S	250	T250del	ACT	---	1	1	B.1.1.1	0.000327
S	250	T250del	ACT	---	1	1	B.1.1.159	0.004673
S	250	T250T	acT	acC	1	1	B.1.1.222	0.000204
S	250	T250N	aCt	aAt	1	1	B.1.1.28	0.000311
S	250	T250I	aCt	aTt	1	1	B.1.1.344	0.010753
S	250	T250del	ACT	---	1	1	B.1.1.348	0.000796
S	250	T250del	ACT	---	1	1	B.1.1.372	0.000689
S	250	T250del	ACT	---	1	1	B.1.1.528	0.004808
S	250	T250A	Act	Gct	1	1	B.1.1.63	0.000386
S	250	T250A	Act	Gct	1	1	B.1.160	0.000031
S	250	T250K	aCT	aAA	1	1	B.1.160.10	0.008065
S	250	T250N	aCt	aAt	1	1	B.1.160.10	0.008065
S	250	T250T	acT	acA	1	1	B.1.160.10	0.008065
S	250	T250I	aCt	aTt	1	1	B.1.177	0.000013
S	250	T250A	Act	Gct	1	1	B.1.177.35	0.000691
S	250	T250del	ACT	---	1	1	B.1.177.69	0.001484
S	250	T250T	acT	acC	1	1	B.1.177.7	0.000165
S	250	T250del	ACT	---	1	1	B.1.177.76	0.002494
S	250	T250N	aCt	aAt	1	1	B.1.177.79	0.002342
S	250	T250K	aCT	aAA	1	1	B.1.2	0.000009
S	250	T250A	Act	Gct	1	1	B.1.206	0.000816
S	250	T250I	aCt	aTt	1	1	B.1.232	0.000537
S	250	T250S	aCt	aGt	1	1	B.1.234	0.000132
S	250	T250A	Act	Gct	1	1	B.1.240	0.000216
S	250	T250A	Act	Gct	1	1	B.1.241	0.000812
S	250	T250I	aCt	aTt	1	1	B.1.243	0.00007
S	250	T250N	aCt	aAt	1	1	B.1.258	0.000067
S	250	T250P	Act	Cct	1	1	B.1.258.17	0.000104
S	250	T250I	aCt	aTt	1	1	B.1.311	0.000275
S	250	T250T	acT	acC	1	1	B.1.332	0.003497
S	250	T250S	Act	Tct	1	1	B.1.351	0.00003
S	250	T250del	ACT	---	1	1	B.1.351	0.00003
S	250	T250N	aCt	aAt	1	1	B.1.36	0.000146
S	250	T250N	aCt	aAt	1	1	B.1.36.22	0.001208
S	250	T250I	aCt	aTt	1	1	B.1.369	0.000285
S	250	T250T	acT	acC	1	1	B.1.375	0.00082
S	250	T250T	acT	acC	1	1	B.1.378	0.006849
S	250	T250N	aCt	aAt	1	1	B.1.395	0.007042
S	250	T250N	aCt	aAt	1	1	B.1.399	0.001934
S	250	T250del1	acT	ac-	1	1	B.1.429	0.000024
S	250	T250N	aCt	aAt	1	1	B.1.429	0.000024
S	250	T250T	acT	acC	1	1	B.1.429	0.000024
S	250	T250N	aCt	aAt	1	1	B.1.470	0.001404
S	250	T250N	aCt	aAt	1	1	B.1.517	0.000427
S	250	T250P	Act	Cct	1	1	B.1.526	0.000024
S	250	T250del	ACT	---	1	1	B.1.561	0.000397
S	250	T250T	acT	acC	1	1	B.1.580	0.004065
S	250	T250T	acT	acC	1	1	B.1.590	0.004545
S	250	T250T	acT	acC	1	1	B.1.595	0.000261
S	250	T250P	Act	Cct	1	1	B.1.596	0.000087
S	250	T250I	aCt	aTt	1	1	B.1.596	0.000087
S	250	T250I	aCt	aTt	1	1	B.1.617.1	0.000129
S	250	T250T	acT	acC	1	1	B.1.619	0.000871
S	250	T250del	ACT	---	1	1	B.1.620	0.000946
S	250	T250T	acT	acC	1	1	B.1.621	0.000089
S	250	T250I	aCt	aTt	1	1	B.1.637	0.000073
S	250	T250I	aCt	aTt	1	1	B.1.78	0.008547
S	250	T250T	acT	acC	1	1	B.1.94	0.027027
S	250	T250N	aCt	aAt	1	1	B.4	0.002208
S	250	T250T	acT	acC	1	1	B.40	0.000364
S	250	T250N	aCt	aAt	1	1	C.16	0.00106
S	250	T250T	acT	acG	1	1	C.36.3	0.000567
S	250	T250S	aCt	aGt	1	1	C.37	0.000116
S	250	T250T	acT	acA	1	1	D.2	0.000075
S	250	T250I	aCt	aTt	1	1	D.2	0.000075
S	250	T250N	aCt	aAt	1	1	D.2	0.000075
S	250	T250del	ACT	---	1	1	P.1.1	0.000318
S	250	T250del2	ACT	--N	1	1	P.1.15	0.000232
S	250	T250I	aCt	aTt	1	1	P.1.15	0.000232
S	250	T250T	acT	acC	1	1	P.1.3	0.034483
S	250	T250I	aCt	aTt	1	1	P.3	0.001595
S	250	T250I	aCt	aTt	1	1	Q.1	0.000126
S	250	T250P	Act	Cct	1	1	Q.1	0.000126
S	250	T250I	aCt	aTt	1	1	U.3	0.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.