CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 25 | P25P | syn | ccC | ccT | 11603 | 11457 | 0.987417 | 21635-21637 | |
S | 25 | P25P | syn | ccC | ccA | 11603 | 101 | 0.00870465 | 21635-21637 | |
S | 25 | P25P | syn | ccC | ccG | 11603 | 45 | 0.00387831 | 21635-21637 | |
S | 25 | P25S | nonsyn | Ccc | Tcc | 2866 | 2866 | 1 | 21635-21637 | |
S | 25 | P25L | nonsyn | cCc | cTc | 1574 | 1566 | 0.994917 | 21635-21637 | |
S | 25 | P25L | nonsyn | cCC | cTT | 1574 | 5 | 0.00317662 | 21635-21637 | |
S | 25 | P25L | nonsyn | cCC | cTA | 1574 | 2 | 0.00127065 | 21635-21637 | |
S | 25 | P25L | nonsyn | CCC | TTA | 1574 | 1 | 0.000635324 | 21635-21637 | |
S | 25 | P25T | nonsyn | Ccc | Acc | 1297 | 1292 | 0.996145 | 21635-21637 | |
S | 25 | P25T | nonsyn | CcC | AcT | 1297 | 5 | 0.00385505 | 21635-21637 | |
S | 25 | P25H | nonsyn | cCc | cAc | 189 | 189 | 1 | 21635-21637 | |
S | 25 | P25del | del | CCC | --- | 93 | 93 | 1 | 21635-21637 | |
S | 25 | P25del1 | del | Ccc | -cc | 89 | 82 | 0.921348 | 21635-21637 | |
S | 25 | P25del1 | del | ccC | cc- | 89 | 5 | 0.0561798 | 21635-21637 | |
S | 25 | P25del1 | del | CCc | -Nc | 89 | 2 | 0.0224719 | 21635-21637 | |
S | 25 | P25V | nonsyn | CCc | GTc | 11 | 7 | 0.636364 | 21635-21637 | |
S | 25 | P25V | nonsyn | CCC | GTT | 11 | 2 | 0.181818 | 21635-21637 | |
S | 25 | P25V | nonsyn | CCC | GTA | 11 | 2 | 0.181818 | 21635-21637 | |
S | 25 | P25A | nonsyn | Ccc | Gcc | 8 | 4 | 0.5 | 21635-21637 | |
S | 25 | P25A | nonsyn | CcC | GcT | 8 | 2 | 0.25 | 21635-21637 | |
S | 25 | P25A | nonsyn | CcC | GcA | 8 | 2 | 0.25 | 21635-21637 | |
S | 25 | P25F | nonsyn | CCc | TTc | 7 | 6 | 0.857143 | 21635-21637 | |
S | 25 | P25F | nonsyn | CCC | TTT | 7 | 1 | 0.142857 | 21635-21637 | |
S | 25 | P25R | nonsyn | cCc | cGc | 6 | 6 | 1 | 21635-21637 | |
S | 25 | P25del2 | del | CCc | --c | 2 | 2 | 1 | 21635-21637 | |
S | 25 | P25I | nonsyn | CCc | ATc | 2 | 1 | 0.5 | 21635-21637 | |
S | 25 | P25I | nonsyn | CCC | ATT | 2 | 1 | 0.5 | 21635-21637 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 25 | P25P | ccC | ccT | 11457 | 11603 | All | 0.002191 |
S | 25 | P25P | ccC | ccA | 101 | 11603 | All | 0.000019 |
S | 25 | P25P | ccC | ccG | 45 | 11603 | All | 0.000009 |
S | 25 | P25P | ccC | ccT | 5048 | 5049 | B.1.1.37 | 0.973578 |
S | 25 | P25P | ccC | ccG | 1 | 5049 | B.1.1.37 | 0.000193 |
S | 25 | P25S | Ccc | Tcc | 2866 | 2866 | All | 0.000548 |
S | 25 | P25L | cCc | cTc | 1566 | 1574 | All | 0.0003 |
S | 25 | P25L | cCC | cTT | 5 | 1574 | All | 0.000001 |
S | 25 | P25L | cCC | cTA | 2 | 1574 | All | 0 |
S | 25 | P25L | CCC | TTA | 1 | 1574 | All | 0 |
S | 25 | P25P | ccC | ccT | 1558 | 1558 | B.1.619.1 | 0.999359 |
S | 25 | P25T | Ccc | Acc | 1292 | 1297 | All | 0.000247 |
S | 25 | P25T | CcC | AcT | 5 | 1297 | All | 0.000001 |
S | 25 | P25P | ccC | ccT | 1101 | 1101 | B.1.619 | 0.959059 |
S | 25 | P25P | ccC | ccT | 600 | 631 | B.1.1.7 | 0.000537 |
S | 25 | P25P | ccC | ccA | 30 | 631 | B.1.1.7 | 0.000027 |
S | 25 | P25P | ccC | ccG | 1 | 631 | B.1.1.7 | 0.000001 |
S | 25 | P25S | Ccc | Tcc | 593 | 593 | B.1.617.2 | 0.002233 |
S | 25 | P25S | Ccc | Tcc | 434 | 434 | AY.25 | 0.00261 |
S | 25 | P25S | Ccc | Tcc | 422 | 422 | B.1.258.3 | 0.706868 |
S | 25 | P25L | cCc | cTc | 417 | 418 | B.1.1.7 | 0.000373 |
S | 25 | P25L | CCC | TTA | 1 | 418 | B.1.1.7 | 0.000001 |
S | 25 | P25P | ccC | ccT | 380 | 380 | AY.54 | 0.036232 |
S | 25 | P25P | ccC | ccT | 343 | 344 | AY.103 | 0.00213 |
S | 25 | P25P | ccC | ccA | 1 | 344 | AY.103 | 0.000006 |
S | 25 | P25S | Ccc | Tcc | 336 | 336 | B.1.1.7 | 0.000301 |
S | 25 | P25T | Ccc | Acc | 262 | 262 | AY.4 | 0.000408 |
S | 25 | P25P | ccC | ccT | 216 | 253 | AY.4 | 0.000336 |
S | 25 | P25P | ccC | ccA | 36 | 253 | AY.4 | 0.000056 |
S | 25 | P25P | ccC | ccG | 1 | 253 | AY.4 | 0.000002 |
S | 25 | P25S | Ccc | Tcc | 217 | 217 | AY.43 | 0.000961 |
S | 25 | P25T | Ccc | Acc | 209 | 214 | B.1.1.7 | 0.000187 |
S | 25 | P25T | CcC | AcT | 5 | 214 | B.1.1.7 | 0.000004 |
S | 25 | P25P | ccC | ccT | 185 | 198 | B.1.617.2 | 0.000697 |
S | 25 | P25P | ccC | ccA | 7 | 198 | B.1.617.2 | 0.000026 |
S | 25 | P25P | ccC | ccG | 6 | 198 | B.1.617.2 | 0.000023 |
S | 25 | P25L | cCc | cTc | 195 | 195 | AY.4 | 0.000304 |
S | 25 | P25H | cCc | cAc | 189 | 189 | All | 0.000036 |
S | 25 | P25P | ccC | ccT | 185 | 185 | B.1.630 | 0.968586 |
S | 25 | P25S | Ccc | Tcc | 153 | 153 | AY.4 | 0.000238 |
S | 25 | P25P | ccC | ccT | 148 | 148 | B.1.526 | 0.003479 |
S | 25 | P25T | Ccc | Acc | 138 | 138 | B.1.617.2 | 0.00052 |
S | 25 | P25P | ccC | ccT | 126 | 126 | B.1.2 | 0.001109 |
S | 25 | P25L | cCc | cTc | 116 | 116 | C.1.2 | 0.493617 |
S | 25 | P25T | Ccc | Acc | 106 | 106 | B.1.637 | 0.007746 |
S | 25 | P25P | ccC | ccT | 98 | 98 | AY.25 | 0.000589 |
S | 25 | P25del | CCC | --- | 93 | 93 | All | 0.000018 |
S | 25 | P25P | ccC | ccT | 87 | 92 | B.1 | 0.000797 |
S | 25 | P25P | ccC | ccA | 3 | 92 | B.1 | 0.000027 |
S | 25 | P25P | ccC | ccG | 2 | 92 | B.1 | 0.000018 |
S | 25 | P25del1 | Ccc | -cc | 82 | 89 | All | 0.000016 |
S | 25 | P25del1 | ccC | cc- | 5 | 89 | All | 0.000001 |
S | 25 | P25del1 | CCc | -Nc | 2 | 89 | All | 0 |
S | 25 | P25L | cCc | cTc | 87 | 87 | B.1.160 | 0.002713 |
S | 25 | P25P | ccC | ccT | 80 | 80 | AY.4.2 | 0.001735 |
S | 25 | P25P | ccC | ccT | 73 | 73 | B.1.177.80 | 0.139579 |
S | 25 | P25P | ccC | ccT | 66 | 68 | AY.44 | 0.000402 |
S | 25 | P25P | ccC | ccA | 2 | 68 | AY.44 | 0.000012 |
S | 25 | P25S | Ccc | Tcc | 63 | 63 | AY.44 | 0.000383 |
S | 25 | P25P | ccC | ccT | 61 | 61 | AY.100 | 0.002806 |
S | 25 | P25P | ccC | ccT | 59 | 59 | B.1.1.222 | 0.012036 |
S | 25 | P25P | ccC | ccT | 57 | 57 | P.1 | 0.000898 |
S | 25 | P25L | cCc | cTc | 55 | 55 | B.1.351 | 0.001635 |
S | 25 | P25P | ccC | ccT | 52 | 52 | AY.47 | 0.001617 |
S | 25 | P25T | Ccc | Acc | 52 | 52 | B.1.258.22 | 0.138667 |
S | 25 | P25P | ccC | ccT | 49 | 49 | AY.39 | 0.001211 |
S | 25 | P25P | ccC | ccT | 45 | 47 | AY.43 | 0.000199 |
S | 25 | P25P | ccC | ccA | 2 | 47 | AY.43 | 0.000009 |
S | 25 | P25H | cCc | cAc | 46 | 46 | B.1.1.7 | 0.000041 |
S | 25 | P25P | ccC | ccT | 44 | 45 | B.1.1.519 | 0.001747 |
S | 25 | P25P | ccC | ccA | 1 | 45 | B.1.1.519 | 0.00004 |
S | 25 | P25L | cCc | cTc | 45 | 45 | B.1.617.2 | 0.000169 |
S | 25 | P25T | Ccc | Acc | 44 | 44 | AY.43 | 0.000195 |
S | 25 | P25S | Ccc | Tcc | 40 | 40 | AY.103 | 0.000248 |
S | 25 | P25P | ccC | ccT | 39 | 40 | AY.3 | 0.000388 |
S | 25 | P25P | ccC | ccA | 1 | 40 | AY.3 | 0.00001 |
S | 25 | P25L | cCc | cTc | 40 | 40 | AY.43 | 0.000177 |
S | 25 | P25H | cCc | cAc | 38 | 38 | AY.75 | 0.002129 |
S | 25 | P25del1 | Ccc | -cc | 35 | 36 | B.1.1.7 | 0.000031 |
S | 25 | P25del1 | ccC | cc- | 1 | 36 | B.1.1.7 | 0.000001 |
S | 25 | P25T | Ccc | Acc | 35 | 35 | AY.103 | 0.000217 |
S | 25 | P25P | ccC | ccT | 35 | 35 | AY.26 | 0.000991 |
S | 25 | P25T | Ccc | Acc | 33 | 33 | AY.29 | 0.000521 |
S | 25 | P25P | ccC | ccT | 33 | 33 | AY.99.2 | 0.003041 |
S | 25 | P25L | cCc | cTc | 32 | 32 | AY.103 | 0.000199 |
S | 25 | P25L | cCc | cTc | 32 | 32 | AY.25 | 0.000192 |
S | 25 | P25L | cCc | cTc | 31 | 31 | AY.44 | 0.000189 |
S | 25 | P25S | Ccc | Tcc | 31 | 31 | P.1.15 | 0.007203 |
S | 25 | P25L | cCc | cTc | 30 | 30 | B.1.2 | 0.000264 |
S | 25 | P25P | ccC | ccG | 29 | 29 | B.1.1.28 | 0.009026 |
S | 25 | P25L | cCc | cTc | 28 | 28 | AY.120 | 0.001041 |
S | 25 | P25P | ccC | ccT | 28 | 28 | AY.121 | 0.003789 |
S | 25 | P25L | cCc | cTc | 28 | 28 | AY.20 | 0.001088 |
S | 25 | P25S | Ccc | Tcc | 28 | 28 | AY.3 | 0.000278 |
S | 25 | P25S | Ccc | Tcc | 27 | 27 | AY.23 | 0.001883 |
S | 25 | P25S | Ccc | Tcc | 27 | 27 | AY.5 | 0.000558 |
S | 25 | P25S | Ccc | Tcc | 27 | 27 | AY.61 | 0.002829 |
S | 25 | P25S | Ccc | Tcc | 25 | 25 | AY.78 | 0.038521 |
S | 25 | P25S | Ccc | Tcc | 24 | 24 | AY.29 | 0.000379 |
S | 25 | P25P | ccC | ccT | 22 | 22 | B.1.1 | 0.000399 |
S | 25 | P25P | ccC | ccT | 22 | 22 | B.1.177.81 | 0.004165 |
S | 25 | P25P | ccC | ccT | 21 | 21 | AY.20 | 0.000816 |
S | 25 | P25T | Ccc | Acc | 21 | 21 | AY.25 | 0.000126 |
S | 25 | P25T | Ccc | Acc | 21 | 21 | AY.26 | 0.000595 |
S | 25 | P25L | cCc | cTc | 21 | 21 | B.1.177 | 0.000277 |
S | 25 | P25T | Ccc | Acc | 21 | 21 | B.1.429 | 0.000494 |
S | 25 | P25L | cCc | cTc | 20 | 20 | AY.45 | 0.002434 |
S | 25 | P25P | ccC | ccT | 18 | 20 | B.1.177 | 0.000237 |
S | 25 | P25P | ccC | ccA | 2 | 20 | B.1.177 | 0.000026 |
S | 25 | P25P | ccC | ccT | 20 | 20 | C.37 | 0.002321 |
S | 25 | P25S | Ccc | Tcc | 19 | 19 | B.1.438.1 | 0.002038 |
S | 25 | P25T | Ccc | Acc | 18 | 18 | AY.44 | 0.00011 |
S | 25 | P25L | cCc | cTc | 18 | 18 | B.1 | 0.000165 |
S | 25 | P25S | Ccc | Tcc | 18 | 18 | B.1.2 | 0.000158 |
S | 25 | P25T | Ccc | Acc | 18 | 18 | B.1.2 | 0.000158 |
S | 25 | P25P | ccC | ccT | 17 | 17 | AY.14 | 0.001496 |
S | 25 | P25T | Ccc | Acc | 17 | 17 | AY.39 | 0.00042 |
S | 25 | P25P | ccC | ccT | 17 | 17 | AY.46.3 | 0.015873 |
S | 25 | P25T | Ccc | Acc | 17 | 17 | B.1.351 | 0.000505 |
S | 25 | P25S | Ccc | Tcc | 17 | 17 | B.1.351 | 0.000505 |
S | 25 | P25S | Ccc | Tcc | 16 | 16 | AY.46 | 0.001665 |
S | 25 | P25T | Ccc | Acc | 16 | 16 | B.1.221 | 0.001137 |
S | 25 | P25P | ccC | ccT | 12 | 16 | B.1.258 | 0.000799 |
S | 25 | P25P | ccC | ccA | 4 | 16 | B.1.258 | 0.000266 |
S | 25 | P25P | ccC | ccT | 16 | 16 | B.1.351 | 0.000476 |
S | 25 | P25S | Ccc | Tcc | 15 | 15 | AY.102 | 0.000398 |
S | 25 | P25L | cCc | cTc | 15 | 15 | AY.29 | 0.000237 |
S | 25 | P25del | CCC | --- | 15 | 15 | B.1.1.7 | 0.000013 |
S | 25 | P25P | ccC | ccT | 15 | 15 | B.1.177.83 | 0.022222 |
S | 25 | P25L | cCc | cTc | 15 | 15 | B.1.214.2 | 0.008993 |
S | 25 | P25P | ccC | ccT | 15 | 15 | B.1.36 | 0.002189 |
S | 25 | P25P | ccC | ccT | 13 | 15 | B.1.596 | 0.001133 |
S | 25 | P25P | ccC | ccA | 2 | 15 | B.1.596 | 0.000174 |
S | 25 | P25L | cCc | cTc | 15 | 15 | P.1 | 0.000236 |
S | 25 | P25T | Ccc | Acc | 14 | 14 | B.1 | 0.000128 |
S | 25 | P25S | Ccc | Tcc | 14 | 14 | B.1.1 | 0.000254 |
S | 25 | P25L | cCc | cTc | 14 | 14 | C.36.3.1 | 0.038043 |
S | 25 | P25H | cCc | cAc | 13 | 13 | AY.4 | 0.00002 |
S | 25 | P25L | cCc | cTc | 13 | 13 | B.1.1 | 0.000236 |
S | 25 | P25P | ccC | ccT | 13 | 13 | B.1.177.21 | 0.000994 |
S | 25 | P25H | cCc | cAc | 13 | 13 | B.1.637 | 0.00095 |
S | 25 | P25P | ccC | ccT | 13 | 13 | P.1.15 | 0.00302 |
S | 25 | P25L | cCc | cTc | 12 | 12 | AY.3 | 0.000119 |
S | 25 | P25P | ccC | ccT | 12 | 12 | AY.5 | 0.000248 |
S | 25 | P25T | Ccc | Acc | 12 | 12 | B.1.1 | 0.000218 |
S | 25 | P25T | Ccc | Acc | 12 | 12 | B.1.1.434 | 0.004183 |
S | 25 | P25L | cCc | cTc | 12 | 12 | B.1.1.63 | 0.00463 |
S | 25 | P25H | cCc | cAc | 12 | 12 | B.1.351 | 0.000357 |
S | 25 | P25P | ccC | ccT | 12 | 12 | B.1.438.1 | 0.001287 |
S | 25 | P25P | ccC | ccT | 12 | 12 | W.2 | 0.057971 |
S | 25 | P25V | CCc | GTc | 7 | 11 | All | 0.000001 |
S | 25 | P25V | CCC | GTA | 2 | 11 | All | 0 |
S | 25 | P25V | CCC | GTT | 2 | 11 | All | 0 |
S | 25 | P25H | cCc | cAc | 11 | 11 | AY.20 | 0.000428 |
S | 25 | P25T | Ccc | Acc | 11 | 11 | AY.3 | 0.000109 |
S | 25 | P25L | cCc | cTc | 11 | 11 | AY.3.1 | 0.000938 |
S | 25 | P25P | ccC | ccT | 11 | 11 | B.1.236 | 0.022587 |
S | 25 | P25P | ccC | ccT | 11 | 11 | B.1.429 | 0.000259 |
S | 25 | P25L | cCc | cTc | 10 | 10 | AY.102 | 0.000265 |
S | 25 | P25del | CCC | --- | 10 | 10 | AY.33 | 0.000668 |
S | 25 | P25T | Ccc | Acc | 10 | 10 | AY.5 | 0.000206 |
S | 25 | P25P | ccC | ccT | 10 | 10 | AY.80 | 0.011287 |
S | 25 | P25S | Ccc | Tcc | 10 | 10 | B.1.1.159 | 0.046729 |
S | 25 | P25P | ccC | ccT | 10 | 10 | B.1.628 | 0.003524 |
S | 25 | P25T | Ccc | Acc | 9 | 9 | AY.121 | 0.001218 |
S | 25 | P25S | Ccc | Tcc | 9 | 9 | AY.27 | 0.000582 |
S | 25 | P25T | Ccc | Acc | 9 | 9 | AY.36 | 0.001334 |
S | 25 | P25del1 | Ccc | -cc | 9 | 9 | AY.44 | 0.000055 |
S | 25 | P25S | Ccc | Tcc | 9 | 9 | AY.47 | 0.00028 |
S | 25 | P25L | cCc | cTc | 9 | 9 | AY.91 | 0.006574 |
S | 25 | P25P | ccC | ccT | 9 | 9 | B.1.1.39 | 0.004587 |
S | 25 | P25L | cCc | cTc | 9 | 9 | B.1.177.86 | 0.001651 |
S | 25 | P25T | Ccc | Acc | 9 | 9 | B.1.438.1 | 0.000965 |
S | 25 | P25P | ccC | ccT | 9 | 9 | B.1.637 | 0.000658 |
S | 25 | P25A | Ccc | Gcc | 4 | 8 | All | 0.000001 |
S | 25 | P25A | CcC | GcA | 2 | 8 | All | 0 |
S | 25 | P25A | CcC | GcT | 2 | 8 | All | 0 |
S | 25 | P25S | Ccc | Tcc | 8 | 8 | AY.111 | 0.001465 |
S | 25 | P25P | ccC | ccT | 8 | 8 | AY.33 | 0.000534 |
S | 25 | P25S | Ccc | Tcc | 8 | 8 | AY.39 | 0.000198 |
S | 25 | P25L | cCc | cTc | 8 | 8 | AY.47 | 0.000249 |
S | 25 | P25P | ccC | ccT | 8 | 8 | AY.98.1 | 0.000387 |
S | 25 | P25P | ccC | ccT | 8 | 8 | B.1.1.354 | 0.035088 |
S | 25 | P25P | ccC | ccT | 8 | 8 | B.1.177.4 | 0.001688 |
S | 25 | P25P | ccC | ccT | 8 | 8 | B.1.221 | 0.000568 |
S | 25 | P25F | CCc | TTc | 6 | 7 | All | 0.000001 |
S | 25 | P25F | CCC | TTT | 1 | 7 | All | 0 |
S | 25 | P25S | Ccc | Tcc | 7 | 7 | AY.100 | 0.000322 |
S | 25 | P25P | ccC | ccT | 6 | 7 | AY.102 | 0.000159 |
S | 25 | P25P | ccC | ccA | 1 | 7 | AY.102 | 0.000027 |
S | 25 | P25L | cCc | cTc | 7 | 7 | AY.111 | 0.001282 |
S | 25 | P25P | ccC | ccT | 7 | 7 | AY.3.1 | 0.000597 |
S | 25 | P25S | Ccc | Tcc | 7 | 7 | AY.34.1 | 0.00357 |
S | 25 | P25L | cCc | cTc | 7 | 7 | AY.39 | 0.000173 |
S | 25 | P25del1 | Ccc | -cc | 6 | 7 | AY.43 | 0.000027 |
S | 25 | P25del1 | CCc | -Nc | 1 | 7 | AY.43 | 0.000004 |
S | 25 | P25P | ccC | ccT | 7 | 7 | AY.5.3 | 0.002362 |
S | 25 | P25T | Ccc | Acc | 7 | 7 | AY.5.3 | 0.002362 |
S | 25 | P25P | ccC | ccT | 7 | 7 | AY.61 | 0.000733 |
S | 25 | P25S | Ccc | Tcc | 7 | 7 | B.1 | 0.000064 |
S | 25 | P25L | cCc | cTc | 7 | 7 | B.1.1.214 | 0.000388 |
S | 25 | P25S | Ccc | Tcc | 7 | 7 | B.1.177.8 | 0.005267 |
S | 25 | P25P | ccC | ccT | 7 | 7 | B.1.311 | 0.001922 |
S | 25 | P25S | Ccc | Tcc | 7 | 7 | B.1.427 | 0.000353 |
S | 25 | P25L | cCc | cTc | 7 | 7 | B.1.429 | 0.000165 |
S | 25 | P25S | Ccc | Tcc | 7 | 7 | B.1.526 | 0.000165 |
S | 25 | P25V | CCc | GTc | 7 | 7 | B.1.618 | 0.028226 |
S | 25 | P25R | cCc | cGc | 6 | 6 | All | 0.000001 |
S | 25 | P25T | Ccc | Acc | 6 | 6 | AY.102 | 0.000159 |
S | 25 | P25del | CCC | --- | 6 | 6 | AY.103 | 0.000037 |
S | 25 | P25S | Ccc | Tcc | 6 | 6 | AY.114 | 0.001387 |
S | 25 | P25P | ccC | ccT | 6 | 6 | AY.119 | 0.000212 |
S | 25 | P25S | Ccc | Tcc | 6 | 6 | AY.119 | 0.000212 |
S | 25 | P25T | Ccc | Acc | 6 | 6 | AY.120 | 0.000223 |
S | 25 | P25L | cCc | cTc | 6 | 6 | AY.14 | 0.000528 |
S | 25 | P25P | ccC | ccT | 6 | 6 | AY.29 | 0.000095 |
S | 25 | P25H | cCc | cAc | 6 | 6 | AY.3 | 0.00006 |
S | 25 | P25T | Ccc | Acc | 6 | 6 | AY.53 | 0.001725 |
S | 25 | P25del | CCC | --- | 6 | 6 | B.1.1 | 0.000109 |
S | 25 | P25T | Ccc | Acc | 6 | 6 | B.1.1.519 | 0.000238 |
S | 25 | P25S | Ccc | Tcc | 6 | 6 | B.1.1.74 | 0.025862 |
S | 25 | P25P | ccC | ccT | 6 | 6 | B.1.160 | 0.000187 |
S | 25 | P25L | cCc | cTc | 6 | 6 | B.1.258 | 0.000399 |
S | 25 | P25L | cCc | cTc | 6 | 6 | B.1.369 | 0.001711 |
S | 25 | P25S | Ccc | Tcc | 6 | 6 | P.1 | 0.000095 |
S | 25 | P25L | cCc | cTc | 6 | 6 | P.1.1 | 0.001906 |
S | 25 | P25L | cCc | cTc | 6 | 6 | P.1.14 | 0.000287 |
S | 25 | P25P | ccC | ccT | 6 | 6 | P.1.7 | 0.001916 |
S | 25 | P25T | Ccc | Acc | 5 | 5 | AY.109 | 0.003698 |
S | 25 | P25L | cCc | cTc | 5 | 5 | AY.117 | 0.000423 |
S | 25 | P25P | ccC | ccT | 5 | 5 | AY.118 | 0.000313 |
S | 25 | P25T | Ccc | Acc | 5 | 5 | AY.119 | 0.000177 |
S | 25 | P25S | Ccc | Tcc | 5 | 5 | AY.120 | 0.000186 |
S | 25 | P25S | Ccc | Tcc | 5 | 5 | AY.20 | 0.000194 |
S | 25 | P25P | ccC | ccT | 5 | 5 | AY.21 | 0.009488 |
S | 25 | P25T | Ccc | Acc | 5 | 5 | AY.23 | 0.000349 |
S | 25 | P25S | Ccc | Tcc | 5 | 5 | AY.3.1 | 0.000426 |
S | 25 | P25H | cCc | cAc | 5 | 5 | AY.39 | 0.000124 |
S | 25 | P25del | CCC | --- | 5 | 5 | AY.4 | 0.000008 |
S | 25 | P25T | Ccc | Acc | 5 | 5 | AY.42 | 0.000201 |
S | 25 | P25S | Ccc | Tcc | 5 | 5 | AY.45 | 0.000608 |
S | 25 | P25S | Ccc | Tcc | 5 | 5 | AY.5.3 | 0.001687 |
S | 25 | P25P | ccC | ccT | 5 | 5 | AY.9 | 0.000338 |
S | 25 | P25T | Ccc | Acc | 5 | 5 | AY.9.2 | 0.000184 |
S | 25 | P25P | ccC | ccT | 5 | 5 | AY.9.2 | 0.000184 |
S | 25 | P25L | cCc | cTc | 5 | 5 | B.1.1.519 | 0.000199 |
S | 25 | P25H | cCc | cAc | 5 | 5 | B.1.177 | 0.000066 |
S | 25 | P25P | ccC | ccT | 5 | 5 | B.1.177.50 | 0.023474 |
S | 25 | P25P | ccC | ccT | 5 | 5 | B.1.243 | 0.000348 |
S | 25 | P25S | Ccc | Tcc | 5 | 5 | B.1.561 | 0.001985 |
S | 25 | P25S | Ccc | Tcc | 5 | 5 | B.1.637 | 0.000365 |
S | 25 | P25S | Ccc | Tcc | 5 | 5 | C.36.3 | 0.002836 |
S | 25 | P25P | ccC | ccT | 5 | 5 | C.36.3 | 0.002836 |
S | 25 | P25S | Ccc | Tcc | 5 | 5 | C.37 | 0.00058 |
S | 25 | P25P | ccC | ccT | 5 | 5 | P.1.12 | 0.00242 |
S | 25 | P25L | cCc | cTc | 5 | 5 | P.1.13 | 0.004492 |
S | 25 | P25P | ccC | ccT | 5 | 5 | Q.8 | 0.000825 |
S | 25 | P25P | ccC | ccT | 5 | 5 | R.1 | 0.00045 |
S | 25 | P25H | cCc | cAc | 5 | 5 | R.1 | 0.00045 |
S | 25 | P25L | cCC | cTA | 2 | 4 | 0.111111 | |
S | 25 | P25V | CCC | GTT | 2 | 4 | 0.111111 | |
S | 25 | P25A | CcC | GcT | 2 | 4 | 0.111111 | |
S | 25 | P25A | CcC | GcA | 2 | 4 | 0.111111 | |
S | 25 | P25L | cCC | cTT | 2 | 4 | 0.111111 | |
S | 25 | P25V | CCC | GTA | 2 | 4 | 0.111111 | |
S | 25 | P25P | ccC | ccA | 2 | 4 | 0.111111 | |
S | 25 | P25P | ccC | ccT | 2 | 4 | 0.111111 | |
S | 25 | P25del1 | Ccc | -cc | 4 | 4 | AY.103 | 0.000025 |
S | 25 | P25L | cCc | cTc | 4 | 4 | AY.110 | 0.000451 |
S | 25 | P25T | Ccc | Acc | 4 | 4 | AY.118 | 0.000251 |
S | 25 | P25del | CCC | --- | 4 | 4 | AY.120 | 0.000149 |
S | 25 | P25S | Ccc | Tcc | 4 | 4 | AY.14 | 0.000352 |
S | 25 | P25S | Ccc | Tcc | 4 | 4 | AY.26 | 0.000113 |
S | 25 | P25L | cCc | cTc | 4 | 4 | AY.37 | 0.001264 |
S | 25 | P25L | cCc | cTc | 4 | 4 | AY.39.1 | 0.000158 |
S | 25 | P25T | Ccc | Acc | 4 | 4 | AY.39.1 | 0.000158 |
S | 25 | P25P | ccC | ccT | 4 | 4 | AY.4.5 | 0.00043 |
S | 25 | P25P | ccC | ccT | 4 | 4 | AY.42 | 0.000161 |
S | 25 | P25S | Ccc | Tcc | 4 | 4 | AY.46.6 | 0.000289 |
S | 25 | P25T | Ccc | Acc | 4 | 4 | AY.47 | 0.000124 |
S | 25 | P25S | Ccc | Tcc | 4 | 4 | AY.54 | 0.000381 |
S | 25 | P25P | ccC | ccT | 4 | 4 | AY.59 | 0.002119 |
S | 25 | P25T | Ccc | Acc | 4 | 4 | AY.9 | 0.00027 |
S | 25 | P25T | Ccc | Acc | 4 | 4 | AY.9.1 | 0.000335 |
S | 25 | P25T | Ccc | Acc | 4 | 4 | B.1.1.159 | 0.018692 |
S | 25 | P25S | Ccc | Tcc | 4 | 4 | B.1.1.207 | 0.004728 |
S | 25 | P25P | ccC | ccT | 4 | 4 | B.1.1.216 | 0.003562 |
S | 25 | P25P | ccC | ccT | 4 | 4 | B.1.1.263 | 0.006231 |
S | 25 | P25S | Ccc | Tcc | 4 | 4 | B.1.1.311 | 0.001433 |
S | 25 | P25L | cCc | cTc | 4 | 4 | B.1.1.33 | 0.001684 |
S | 25 | P25F | CCc | TTc | 4 | 4 | B.1.1.7 | 0.000004 |
S | 25 | P25S | Ccc | Tcc | 4 | 4 | B.1.160 | 0.000125 |
S | 25 | P25S | Ccc | Tcc | 4 | 4 | B.1.160.8 | 0.005155 |
S | 25 | P25S | Ccc | Tcc | 4 | 4 | B.1.177 | 0.000053 |
S | 25 | P25T | Ccc | Acc | 4 | 4 | B.1.177 | 0.000053 |
S | 25 | P25P | ccC | ccT | 4 | 4 | B.1.206 | 0.003263 |
S | 25 | P25S | Ccc | Tcc | 4 | 4 | B.1.36 | 0.000584 |
S | 25 | P25S | Ccc | Tcc | 4 | 4 | B.1.429 | 0.000094 |
S | 25 | P25L | cCc | cTc | 4 | 4 | B.1.526 | 0.000094 |
S | 25 | P25del | CCC | --- | 4 | 4 | B.1.617.2 | 0.000015 |
S | 25 | P25P | ccC | ccT | 4 | 4 | D.2 | 0.0003 |
S | 25 | P25T | Ccc | Acc | 4 | 4 | N.9 | 0.02381 |
S | 25 | P25P | ccC | ccT | 4 | 4 | P.1.14 | 0.000191 |
S | 25 | P25L | cCc | cTc | 3 | 3 | A | 0.001161 |
S | 25 | P25P | ccC | ccT | 3 | 3 | A | 0.001161 |
S | 25 | P25S | Ccc | Tcc | 3 | 3 | AY.110 | 0.000338 |
S | 25 | P25P | ccC | ccT | 3 | 3 | AY.113 | 0.000427 |
S | 25 | P25P | ccC | ccT | 2 | 3 | AY.120 | 0.000074 |
S | 25 | P25P | ccC | ccA | 1 | 3 | AY.120 | 0.000037 |
S | 25 | P25H | cCc | cAc | 3 | 3 | AY.25 | 0.000018 |
S | 25 | P25T | Ccc | Acc | 3 | 3 | AY.27 | 0.000194 |
S | 25 | P25P | ccC | ccT | 3 | 3 | AY.29.1 | 0.000662 |
S | 25 | P25T | Ccc | Acc | 3 | 3 | AY.34 | 0.000291 |
S | 25 | P25L | cCc | cTc | 3 | 3 | AY.36 | 0.000445 |
S | 25 | P25S | Ccc | Tcc | 3 | 3 | AY.4.2.1 | 0.000447 |
S | 25 | P25H | cCc | cAc | 3 | 3 | AY.43 | 0.000013 |
S | 25 | P25L | cCc | cTc | 3 | 3 | AY.5 | 0.000062 |
S | 25 | P25L | cCc | cTc | 3 | 3 | AY.59 | 0.001589 |
S | 25 | P25S | Ccc | Tcc | 3 | 3 | AY.6 | 0.000123 |
S | 25 | P25T | Ccc | Acc | 3 | 3 | AY.78 | 0.004622 |
S | 25 | P25P | ccC | ccG | 3 | 3 | AY.9.1 | 0.000251 |
S | 25 | P25del1 | Ccc | -cc | 3 | 3 | AY.9.2 | 0.00011 |
S | 25 | P25L | cCc | cTc | 3 | 3 | AY.99.2 | 0.000276 |
S | 25 | P25P | ccC | ccT | 2 | 3 | B | 0.000256 |
S | 25 | P25P | ccC | ccA | 1 | 3 | B | 0.000128 |
S | 25 | P25S | Ccc | Tcc | 3 | 3 | B.1.1.163 | 0.022901 |
S | 25 | P25L | cCc | cTc | 3 | 3 | B.1.1.176 | 0.001318 |
S | 25 | P25P | ccC | ccT | 3 | 3 | B.1.1.214 | 0.000166 |
S | 25 | P25S | Ccc | Tcc | 3 | 3 | B.1.1.216 | 0.002671 |
S | 25 | P25P | ccC | ccT | 3 | 3 | B.1.1.232 | 0.005445 |
S | 25 | P25P | ccC | ccT | 3 | 3 | B.1.1.25 | 0.001706 |
S | 25 | P25P | ccC | ccT | 3 | 3 | B.1.1.316 | 0.002775 |
S | 25 | P25L | cCC | cTT | 3 | 3 | B.1.1.37 | 0.000579 |
S | 25 | P25S | Ccc | Tcc | 3 | 3 | B.1.1.519 | 0.000119 |
S | 25 | P25T | Ccc | Acc | 3 | 3 | B.1.160 | 0.000094 |
S | 25 | P25del | CCC | --- | 3 | 3 | B.1.177 | 0.00004 |
S | 25 | P25H | cCc | cAc | 3 | 3 | B.1.2 | 0.000026 |
S | 25 | P25del1 | Ccc | -cc | 3 | 3 | B.1.2 | 0.000026 |
S | 25 | P25S | Ccc | Tcc | 3 | 3 | B.1.243 | 0.000209 |
S | 25 | P25P | ccC | ccT | 3 | 3 | B.1.36.29 | 0.001552 |
S | 25 | P25T | Ccc | Acc | 3 | 3 | B.1.427 | 0.000151 |
S | 25 | P25P | ccC | ccT | 3 | 3 | B.1.427 | 0.000151 |
S | 25 | P25P | ccC | ccT | 3 | 3 | B.1.437 | 0.0625 |
S | 25 | P25P | ccC | ccT | 3 | 3 | B.1.575 | 0.00091 |
S | 25 | P25T | Ccc | Acc | 3 | 3 | B.1.588 | 0.00273 |
S | 25 | P25del1 | Ccc | -cc | 3 | 3 | B.1.617.2 | 0.000011 |
S | 25 | P25P | ccC | ccT | 3 | 3 | B.1.621 | 0.000266 |
S | 25 | P25S | Ccc | Tcc | 3 | 3 | B.1.628 | 0.001057 |
S | 25 | P25L | cCc | cTc | 3 | 3 | C.37 | 0.000348 |
S | 25 | P25del | CCC | --- | 3 | 3 | P.1 | 0.000047 |
S | 25 | P25T | Ccc | Acc | 3 | 3 | Q.8 | 0.000495 |
S | 25 | P25T | Ccc | Acc | 3 | 3 | R.1 | 0.00027 |
S | 25 | P25del2 | CCc | --c | 2 | 2 | 0.111111 | |
S | 25 | P25del2 | CCc | --c | 2 | 2 | All | 0 |
S | 25 | P25I | CCC | ATT | 1 | 2 | All | 0 |
S | 25 | P25I | CCc | ATc | 1 | 2 | All | 0 |
S | 25 | P25L | cCc | cTc | 2 | 2 | AY.100 | 0.000092 |
S | 25 | P25T | Ccc | Acc | 2 | 2 | AY.108 | 0.002205 |
S | 25 | P25T | Ccc | Acc | 2 | 2 | AY.111 | 0.000366 |
S | 25 | P25P | ccC | ccT | 2 | 2 | AY.16 | 0.000759 |
S | 25 | P25S | Ccc | Tcc | 2 | 2 | AY.16 | 0.000759 |
S | 25 | P25T | Ccc | Acc | 2 | 2 | AY.20 | 0.000078 |
S | 25 | P25L | cCc | cTc | 2 | 2 | AY.23 | 0.000139 |
S | 25 | P25P | ccC | ccT | 2 | 2 | AY.23 | 0.000139 |
S | 25 | P25del | CCC | --- | 2 | 2 | AY.25 | 0.000012 |
S | 25 | P25S | Ccc | Tcc | 2 | 2 | AY.29.1 | 0.000441 |
S | 25 | P25del1 | Ccc | -cc | 2 | 2 | AY.3 | 0.00002 |
S | 25 | P25L | cCc | cTc | 2 | 2 | AY.33 | 0.000134 |
S | 25 | P25del1 | ccC | cc- | 2 | 2 | AY.4 | 0.000003 |
S | 25 | P25L | cCc | cTc | 2 | 2 | AY.4.2 | 0.000043 |
S | 25 | P25T | Ccc | Acc | 2 | 2 | AY.4.2 | 0.000043 |
S | 25 | P25S | Ccc | Tcc | 2 | 2 | AY.4.2 | 0.000043 |
S | 25 | P25S | Ccc | Tcc | 2 | 2 | AY.4.4 | 0.000818 |
S | 25 | P25del | CCC | --- | 2 | 2 | AY.42 | 0.00008 |
S | 25 | P25S | Ccc | Tcc | 2 | 2 | AY.42 | 0.00008 |
S | 25 | P25del | CCC | --- | 2 | 2 | AY.43 | 0.000009 |
S | 25 | P25P | ccC | ccT | 2 | 2 | AY.45 | 0.000243 |
S | 25 | P25L | cCc | cTc | 2 | 2 | AY.46 | 0.000208 |
S | 25 | P25T | Ccc | Acc | 2 | 2 | AY.46 | 0.000208 |
S | 25 | P25del1 | Ccc | -cc | 2 | 2 | AY.46.6 | 0.000144 |
S | 25 | P25P | ccC | ccT | 2 | 2 | AY.46.6 | 0.000144 |
S | 25 | P25L | cCc | cTc | 2 | 2 | AY.48 | 0.00093 |
S | 25 | P25P | ccC | ccT | 2 | 2 | AY.55 | 0.001835 |
S | 25 | P25L | cCc | cTc | 2 | 2 | AY.6 | 0.000082 |
S | 25 | P25P | ccC | ccT | 2 | 2 | AY.69 | 0.000373 |
S | 25 | P25T | Ccc | Acc | 2 | 2 | AY.75 | 0.000112 |
S | 25 | P25H | cCc | cAc | 2 | 2 | AY.75.1 | 0.000361 |
S | 25 | P25S | Ccc | Tcc | 2 | 2 | AY.85 | 0.000854 |
S | 25 | P25T | Ccc | Acc | 2 | 2 | AY.86 | 0.00166 |
S | 25 | P25L | cCc | cTc | 2 | 2 | AY.9 | 0.000135 |
S | 25 | P25H | cCc | cAc | 2 | 2 | AY.9.2 | 0.000073 |
S | 25 | P25S | Ccc | Tcc | 2 | 2 | AY.9.2 | 0.000073 |
S | 25 | P25del1 | Ccc | -cc | 2 | 2 | AY.96 | 0.004149 |
S | 25 | P25S | Ccc | Tcc | 2 | 2 | AY.98 | 0.000158 |
S | 25 | P25P | ccC | ccT | 2 | 2 | AY.98 | 0.000158 |
S | 25 | P25T | Ccc | Acc | 2 | 2 | AY.98 | 0.000158 |
S | 25 | P25del | CCC | --- | 2 | 2 | B.1 | 0.000018 |
S | 25 | P25del1 | Ccc | -cc | 1 | 2 | B.1 | 0.000009 |
S | 25 | P25del1 | ccC | cc- | 1 | 2 | B.1 | 0.000009 |
S | 25 | P25S | Ccc | Tcc | 2 | 2 | B.1.1.1 | 0.000653 |
S | 25 | P25S | Ccc | Tcc | 2 | 2 | B.1.1.161 | 0.007067 |
S | 25 | P25S | Ccc | Tcc | 2 | 2 | B.1.1.214 | 0.000111 |
S | 25 | P25P | ccC | ccT | 2 | 2 | B.1.1.241 | 0.004141 |
S | 25 | P25T | Ccc | Acc | 2 | 2 | B.1.1.269 | 0.002706 |
S | 25 | P25P | ccC | ccT | 2 | 2 | B.1.1.284 | 0.000215 |
S | 25 | P25P | ccC | ccT | 2 | 2 | B.1.1.306 | 0.000877 |
S | 25 | P25T | Ccc | Acc | 2 | 2 | B.1.1.317 | 0.000823 |
S | 25 | P25S | Ccc | Tcc | 2 | 2 | B.1.1.409 | 0.005666 |
S | 25 | P25P | ccC | ccT | 2 | 2 | B.1.1.63 | 0.000772 |
S | 25 | P25R | cCc | cGc | 2 | 2 | B.1.1.7 | 0.000002 |
S | 25 | P25L | cCc | cTc | 2 | 2 | B.1.1.70 | 0.000682 |
S | 25 | P25L | cCc | cTc | 2 | 2 | B.1.1.71 | 0.012121 |
S | 25 | P25L | cCc | cTc | 2 | 2 | B.1.111 | 0.00235 |
S | 25 | P25del1 | ccC | cc- | 1 | 2 | B.1.177 | 0.000013 |
S | 25 | P25del1 | Ccc | -cc | 1 | 2 | B.1.177 | 0.000013 |
S | 25 | P25L | cCc | cTc | 2 | 2 | B.1.177.17 | 0.001642 |
S | 25 | P25S | Ccc | Tcc | 2 | 2 | B.1.177.21 | 0.000153 |
S | 25 | P25S | Ccc | Tcc | 2 | 2 | B.1.177.60 | 0.000437 |
S | 25 | P25P | ccC | ccT | 2 | 2 | B.1.177.7 | 0.00033 |
S | 25 | P25L | cCc | cTc | 2 | 2 | B.1.177.7 | 0.00033 |
S | 25 | P25S | Ccc | Tcc | 2 | 2 | B.1.177.77 | 0.001452 |
S | 25 | P25S | Ccc | Tcc | 2 | 2 | B.1.177.81 | 0.000379 |
S | 25 | P25del | CCC | --- | 2 | 2 | B.1.177.86 | 0.000367 |
S | 25 | P25P | ccC | ccT | 2 | 2 | B.1.177.86 | 0.000367 |
S | 25 | P25L | cCc | cTc | 2 | 2 | B.1.234 | 0.000264 |
S | 25 | P25P | ccC | ccT | 2 | 2 | B.1.240 | 0.000431 |
S | 25 | P25L | cCc | cTc | 2 | 2 | B.1.243 | 0.000139 |
S | 25 | P25L | cCc | cTc | 2 | 2 | B.1.311 | 0.000549 |
S | 25 | P25T | Ccc | Acc | 2 | 2 | B.1.326 | 0.015152 |
S | 25 | P25P | ccC | ccT | 2 | 2 | B.1.346 | 0.002621 |
S | 25 | P25L | cCc | cTc | 2 | 2 | B.1.351.2 | 0.000605 |
S | 25 | P25P | ccC | ccT | 2 | 2 | B.1.369 | 0.00057 |
S | 25 | P25S | Ccc | Tcc | 2 | 2 | B.1.371 | 0.002245 |
S | 25 | P25S | Ccc | Tcc | 2 | 2 | B.1.469 | 0.00722 |
S | 25 | P25S | Ccc | Tcc | 2 | 2 | B.1.499 | 0.002101 |
S | 25 | P25L | cCc | cTc | 2 | 2 | B.1.525 | 0.000226 |
S | 25 | P25del | CCC | --- | 2 | 2 | B.1.525 | 0.000226 |
S | 25 | P25P | ccC | ccT | 2 | 2 | B.1.525 | 0.000226 |
S | 25 | P25T | Ccc | Acc | 2 | 2 | B.1.526 | 0.000047 |
S | 25 | P25S | Ccc | Tcc | 2 | 2 | B.1.596 | 0.000174 |
S | 25 | P25T | Ccc | Acc | 2 | 2 | B.1.596 | 0.000174 |
S | 25 | P25L | cCc | cTc | 2 | 2 | B.1.596 | 0.000174 |
S | 25 | P25P | ccC | ccT | 2 | 2 | B.1.617.1 | 0.000258 |
S | 25 | P25H | cCc | cAc | 2 | 2 | B.1.617.2 | 0.000008 |
S | 25 | P25L | cCc | cTc | 2 | 2 | B.1.637 | 0.000146 |
S | 25 | P25S | Ccc | Tcc | 2 | 2 | B.61 | 0.011494 |
S | 25 | P25L | cCc | cTc | 2 | 2 | C.36.3 | 0.001134 |
S | 25 | P25L | cCc | cTc | 2 | 2 | P.1.12 | 0.000968 |
S | 25 | P25S | Ccc | Tcc | 2 | 2 | P.1.12 | 0.000968 |
S | 25 | P25L | cCc | cTc | 2 | 2 | P.2 | 0.000373 |
S | 25 | P25S | Ccc | Tcc | 2 | 2 | Q.1 | 0.000253 |
S | 25 | P25S | Ccc | Tcc | 2 | 2 | Q.8 | 0.00033 |
S | 25 | P25L | cCc | cTc | 2 | 2 | U.3 | 0.007722 |
S | 25 | P25R | cCc | cGc | 1 | 1 | 0.055556 | |
S | 25 | P25T | Ccc | Acc | 1 | 1 | A | 0.000387 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | A.1 | 0.000282 |
S | 25 | P25P | ccC | ccT | 1 | 1 | A.18 | 0.05 |
S | 25 | P25del | CCC | --- | 1 | 1 | A.2.4 | 0.003367 |
S | 25 | P25P | ccC | ccT | 1 | 1 | A.2.5 | 0.000499 |
S | 25 | P25L | cCc | cTc | 1 | 1 | A.2.5 | 0.000499 |
S | 25 | P25P | ccC | ccT | 1 | 1 | A.23.1 | 0.000704 |
S | 25 | P25P | ccC | ccT | 1 | 1 | A.6 | 0.005128 |
S | 25 | P25L | cCc | cTc | 1 | 1 | AD.2 | 0.000219 |
S | 25 | P25L | cCc | cTc | 1 | 1 | AU.2 | 0.002421 |
S | 25 | P25del | CCC | --- | 1 | 1 | AY.100 | 0.000046 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | AY.100 | 0.000046 |
S | 25 | P25del | CCC | --- | 1 | 1 | AY.101 | 0.00049 |
S | 25 | P25P | ccC | ccT | 1 | 1 | AY.101 | 0.00049 |
S | 25 | P25L | cCc | cTc | 1 | 1 | AY.101 | 0.00049 |
S | 25 | P25H | cCc | cAc | 1 | 1 | AY.103 | 0.000006 |
S | 25 | P25P | ccC | ccT | 1 | 1 | AY.106 | 0.000335 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | AY.107 | 0.000466 |
S | 25 | P25L | cCc | cTc | 1 | 1 | AY.116.1 | 0.000311 |
S | 25 | P25P | ccC | ccT | 1 | 1 | AY.116.1 | 0.000311 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | AY.117 | 0.000085 |
S | 25 | P25P | ccC | ccT | 1 | 1 | AY.117 | 0.000085 |
S | 25 | P25H | cCc | cAc | 1 | 1 | AY.118 | 0.000063 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | AY.118 | 0.000063 |
S | 25 | P25L | cCc | cTc | 1 | 1 | AY.119 | 0.000035 |
S | 25 | P25L | cCc | cTc | 1 | 1 | AY.12 | 0.000316 |
S | 25 | P25del1 | Ccc | -cc | 1 | 1 | AY.120.1 | 0.000321 |
S | 25 | P25L | cCc | cTc | 1 | 1 | AY.120.1 | 0.000321 |
S | 25 | P25L | cCc | cTc | 1 | 1 | AY.121 | 0.000135 |
S | 25 | P25L | cCc | cTc | 1 | 1 | AY.13 | 0.000161 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | AY.13 | 0.000161 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | AY.13 | 0.000161 |
S | 25 | P25L | cCc | cTc | 1 | 1 | AY.16.1 | 0.00047 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | AY.16.1 | 0.00047 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | AY.2 | 0.000356 |
S | 25 | P25del1 | Ccc | -cc | 1 | 1 | AY.23 | 0.00007 |
S | 25 | P25H | cCc | cAc | 1 | 1 | AY.23 | 0.00007 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | AY.23.1 | 0.000417 |
S | 25 | P25L | cCc | cTc | 1 | 1 | AY.23.1 | 0.000417 |
S | 25 | P25H | cCc | cAc | 1 | 1 | AY.23.1 | 0.000417 |
S | 25 | P25A | Ccc | Gcc | 1 | 1 | AY.25 | 0.000006 |
S | 25 | P25del1 | Ccc | -cc | 1 | 1 | AY.25 | 0.000006 |
S | 25 | P25del | CCC | --- | 1 | 1 | AY.26 | 0.000028 |
S | 25 | P25L | cCc | cTc | 1 | 1 | AY.26 | 0.000028 |
S | 25 | P25L | cCc | cTc | 1 | 1 | AY.27 | 0.000065 |
S | 25 | P25P | ccC | ccT | 1 | 1 | AY.27 | 0.000065 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | AY.29.1 | 0.000221 |
S | 25 | P25R | cCc | cGc | 1 | 1 | AY.3 | 0.00001 |
S | 25 | P25del | CCC | --- | 1 | 1 | AY.3 | 0.00001 |
S | 25 | P25F | CCc | TTc | 1 | 1 | AY.3 | 0.00001 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | AY.3.1 | 0.000085 |
S | 25 | P25del | CCC | --- | 1 | 1 | AY.32 | 0.000532 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | AY.33 | 0.000067 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | AY.34 | 0.000097 |
S | 25 | P25L | cCc | cTc | 1 | 1 | AY.34 | 0.000097 |
S | 25 | P25L | cCc | cTc | 1 | 1 | AY.38 | 0.000499 |
S | 25 | P25P | ccC | ccG | 1 | 1 | AY.38 | 0.000499 |
S | 25 | P25del | CCC | --- | 1 | 1 | AY.39 | 0.000025 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | AY.39.1 | 0.00004 |
S | 25 | P25del1 | Ccc | -cc | 1 | 1 | AY.39.1 | 0.00004 |
S | 25 | P25P | ccC | ccT | 1 | 1 | AY.39.1 | 0.00004 |
S | 25 | P25P | ccC | ccA | 1 | 1 | AY.39.2 | 0.001541 |
S | 25 | P25I | CCc | ATc | 1 | 1 | AY.4 | 0.000002 |
S | 25 | P25R | cCc | cGc | 1 | 1 | AY.4 | 0.000002 |
S | 25 | P25P | ccC | ccT | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | AY.4.3 | 0.000842 |
S | 25 | P25P | ccC | ccT | 1 | 1 | AY.40 | 0.000964 |
S | 25 | P25del1 | Ccc | -cc | 1 | 1 | AY.42 | 0.00004 |
S | 25 | P25L | cCc | cTc | 1 | 1 | AY.42 | 0.00004 |
S | 25 | P25H | cCc | cAc | 1 | 1 | AY.44 | 0.000006 |
S | 25 | P25F | CCC | TTT | 1 | 1 | AY.44 | 0.000006 |
S | 25 | P25A | Ccc | Gcc | 1 | 1 | AY.44 | 0.000006 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | AY.45 | 0.000122 |
S | 25 | P25P | ccC | ccT | 1 | 1 | AY.46 | 0.000104 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | AY.46.2 | 0.000635 |
S | 25 | P25L | cCc | cTc | 1 | 1 | AY.46.2 | 0.000635 |
S | 25 | P25P | ccC | ccT | 1 | 1 | AY.46.4 | 0.000165 |
S | 25 | P25L | cCc | cTc | 1 | 1 | AY.46.4 | 0.000165 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | AY.46.4 | 0.000165 |
S | 25 | P25L | cCc | cTc | 1 | 1 | AY.46.5 | 0.000198 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | AY.46.5 | 0.000198 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | AY.46.6 | 0.000072 |
S | 25 | P25del1 | Ccc | -cc | 1 | 1 | AY.47 | 0.000031 |
S | 25 | P25L | cCc | cTc | 1 | 1 | AY.49 | 0.003195 |
S | 25 | P25P | ccC | ccT | 1 | 1 | AY.49 | 0.003195 |
S | 25 | P25del | CCC | --- | 1 | 1 | AY.5 | 0.000021 |
S | 25 | P25L | cCc | cTc | 1 | 1 | AY.5.2 | 0.002463 |
S | 25 | P25L | cCc | cTc | 1 | 1 | AY.5.4 | 0.000277 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | AY.5.4 | 0.000277 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | AY.53 | 0.000288 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | AY.59 | 0.00053 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | AY.6 | 0.000041 |
S | 25 | P25P | ccC | ccT | 1 | 1 | AY.6 | 0.000041 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | AY.63 | 0.000387 |
S | 25 | P25del1 | Ccc | -cc | 1 | 1 | AY.63 | 0.000387 |
S | 25 | P25P | ccC | ccT | 1 | 1 | AY.63 | 0.000387 |
S | 25 | P25del | CCC | --- | 1 | 1 | AY.68 | 0.000274 |
S | 25 | P25L | cCc | cTc | 1 | 1 | AY.7 | 0.000196 |
S | 25 | P25P | ccC | ccT | 1 | 1 | AY.7.1 | 0.000113 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | AY.70 | 0.000209 |
S | 25 | P25L | cCc | cTc | 1 | 1 | AY.75 | 0.000056 |
S | 25 | P25P | ccC | ccT | 1 | 1 | AY.75 | 0.000056 |
S | 25 | P25del | CCC | --- | 1 | 1 | AY.75.1 | 0.00018 |
S | 25 | P25P | ccC | ccT | 1 | 1 | AY.75.1 | 0.00018 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | AY.75.1 | 0.00018 |
S | 25 | P25L | cCc | cTc | 1 | 1 | AY.8 | 0.000606 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | AY.82 | 0.001357 |
S | 25 | P25P | ccC | ccT | 1 | 1 | AY.84 | 0.000437 |
S | 25 | P25P | ccC | ccT | 1 | 1 | AY.85 | 0.000427 |
S | 25 | P25L | cCc | cTc | 1 | 1 | AY.88 | 0.000884 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | AY.9 | 0.000068 |
S | 25 | P25L | cCc | cTc | 1 | 1 | AY.9.2 | 0.000037 |
S | 25 | P25P | ccC | ccT | 1 | 1 | AY.90 | 0.000684 |
S | 25 | P25L | cCc | cTc | 1 | 1 | AY.93 | 0.000273 |
S | 25 | P25P | ccC | ccT | 1 | 1 | AY.93 | 0.000273 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | AY.97 | 0.001701 |
S | 25 | P25del | CCC | --- | 1 | 1 | AY.98 | 0.000079 |
S | 25 | P25A | Ccc | Gcc | 1 | 1 | AY.98 | 0.000079 |
S | 25 | P25L | cCc | cTc | 1 | 1 | AY.98 | 0.000079 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | AY.98.1 | 0.000048 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | AY.98.1 | 0.000048 |
S | 25 | P25L | cCc | cTc | 1 | 1 | AY.98.1 | 0.000048 |
S | 25 | P25del | CCC | --- | 1 | 1 | AY.98.1 | 0.000048 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | AY.99 | 0.001049 |
S | 25 | P25L | cCc | cTc | 1 | 1 | AY.99 | 0.001049 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | AY.99.2 | 0.000092 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | AY.99.2 | 0.000092 |
S | 25 | P25del1 | Ccc | -cc | 1 | 1 | B | 0.000128 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | B | 0.000128 |
S | 25 | P25H | cCc | cAc | 1 | 1 | B.1 | 0.000009 |
S | 25 | P25H | cCc | cAc | 1 | 1 | B.1.1 | 0.000018 |
S | 25 | P25L | cCc | cTc | 1 | 1 | B.1.1.1 | 0.000327 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.1.1 | 0.000327 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | B.1.1.128 | 0.007092 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | B.1.1.133 | 0.008475 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | B.1.1.141 | 0.002012 |
S | 25 | P25H | cCc | cAc | 1 | 1 | B.1.1.163 | 0.007634 |
S | 25 | P25L | cCc | cTc | 1 | 1 | B.1.1.180 | 0.010753 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.1.192 | 0.002309 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.1.198 | 0.001468 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | B.1.1.207 | 0.001182 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.1.227 | 0.004348 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.1.240 | 0.004695 |
S | 25 | P25del1 | Ccc | -cc | 1 | 1 | B.1.1.25 | 0.000569 |
S | 25 | P25L | cCc | cTc | 1 | 1 | B.1.1.261 | 0.008621 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.1.277 | 0.000759 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | B.1.1.28 | 0.000311 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | B.1.1.28 | 0.000311 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.1.294 | 0.001266 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | B.1.1.302 | 0.002075 |
S | 25 | P25del | CCC | --- | 1 | 1 | B.1.1.306 | 0.000438 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | B.1.1.307 | 0.002532 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.1.311 | 0.000358 |
S | 25 | P25del | CCC | --- | 1 | 1 | B.1.1.315 | 0.008475 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | B.1.1.316 | 0.000925 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.1.33 | 0.000421 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | B.1.1.344 | 0.010753 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.1.344 | 0.010753 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.1.348 | 0.000796 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | B.1.1.348 | 0.000796 |
S | 25 | P25L | cCc | cTc | 1 | 1 | B.1.1.372 | 0.000689 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | B.1.1.374 | 0.002375 |
S | 25 | P25P | ccC | ccA | 1 | 1 | B.1.1.380 | 0.009804 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | B.1.1.39 | 0.00051 |
S | 25 | P25L | cCc | cTc | 1 | 1 | B.1.1.391 | 0.008547 |
S | 25 | P25H | cCc | cAc | 1 | 1 | B.1.1.398 | 0.003226 |
S | 25 | P25del | CCC | --- | 1 | 1 | B.1.1.401 | 0.066667 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | B.1.1.429 | 0.004608 |
S | 25 | P25L | cCc | cTc | 1 | 1 | B.1.1.434 | 0.000349 |
S | 25 | P25del | CCC | --- | 1 | 1 | B.1.1.46 | 0.004367 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.1.50 | 0.000679 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.1.517 | 0.006803 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.105 | 0.009615 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.110 | 0.004525 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.111 | 0.001175 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | B.1.111 | 0.001175 |
S | 25 | P25R | cCc | cGc | 1 | 1 | B.1.111 | 0.001175 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.119 | 0.010526 |
S | 25 | P25L | cCc | cTc | 1 | 1 | B.1.127 | 0.002198 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.149 | 0.003425 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | B.1.160.16 | 0.000929 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | B.1.160.26 | 0.002421 |
S | 25 | P25H | cCc | cAc | 1 | 1 | B.1.160.29 | 0.004219 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.177.12 | 0.000152 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | B.1.177.12 | 0.000152 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | B.1.177.15 | 0.000631 |
S | 25 | P25L | cCc | cTc | 1 | 1 | B.1.177.15 | 0.000631 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.177.17 | 0.000821 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | B.1.177.21 | 0.000076 |
S | 25 | P25H | cCc | cAc | 1 | 1 | B.1.177.44 | 0.000519 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | B.1.177.46 | 0.000918 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | B.1.177.54 | 0.000606 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | B.1.177.56 | 0.000668 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.177.57 | 0.000281 |
S | 25 | P25L | cCc | cTc | 1 | 1 | B.1.177.58 | 0.001332 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.177.6 | 0.000977 |
S | 25 | P25H | cCc | cAc | 1 | 1 | B.1.177.60 | 0.000218 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.177.60 | 0.000218 |
S | 25 | P25L | cCc | cTc | 1 | 1 | B.1.177.60 | 0.000218 |
S | 25 | P25del | CCC | --- | 1 | 1 | B.1.177.68 | 0.015152 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | B.1.177.74 | 0.015152 |
S | 25 | P25del | CCC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.177.84 | 0.006667 |
S | 25 | P25H | cCc | cAc | 1 | 1 | B.1.177.86 | 0.000183 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | B.1.199 | 0.004132 |
S | 25 | P25del | CCC | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 25 | P25del | CCC | --- | 1 | 1 | B.1.221 | 0.000071 |
S | 25 | P25L | cCc | cTc | 1 | 1 | B.1.221 | 0.000071 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | B.1.234 | 0.000132 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | B.1.240 | 0.000216 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.241 | 0.000812 |
S | 25 | P25H | cCc | cAc | 1 | 1 | B.1.258 | 0.000067 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.258.14 | 0.00098 |
S | 25 | P25H | cCc | cAc | 1 | 1 | B.1.258.17 | 0.000104 |
S | 25 | P25L | cCc | cTc | 1 | 1 | B.1.258.17 | 0.000104 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | B.1.258.22 | 0.002667 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.258.7 | 0.001912 |
S | 25 | P25L | cCc | cTc | 1 | 1 | B.1.265 | 0.001271 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | B.1.280 | 0.007143 |
S | 25 | P25L | cCc | cTc | 1 | 1 | B.1.329 | 0.000608 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | B.1.350 | 0.002933 |
S | 25 | P25del1 | Ccc | -cc | 1 | 1 | B.1.351 | 0.00003 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.351.2 | 0.000303 |
S | 25 | P25H | cCc | cAc | 1 | 1 | B.1.36 | 0.000146 |
S | 25 | P25del | CCC | --- | 1 | 1 | B.1.36 | 0.000146 |
S | 25 | P25L | cCc | cTc | 1 | 1 | B.1.36.1 | 0.00114 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | B.1.36.16 | 0.001425 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | B.1.36.29 | 0.000517 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | B.1.36.31 | 0.001751 |
S | 25 | P25L | cCc | cTc | 1 | 1 | B.1.36.31 | 0.001751 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.36.8 | 0.001 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.361 | 0.001289 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.367 | 0.000792 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | B.1.369 | 0.000285 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | B.1.375 | 0.00082 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | B.1.377 | 0.004566 |
S | 25 | P25H | cCc | cAc | 1 | 1 | B.1.382 | 0.008929 |
S | 25 | P25del | CCC | --- | 1 | 1 | B.1.396 | 0.000706 |
S | 25 | P25L | cCc | cTc | 1 | 1 | B.1.396 | 0.000706 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.400 | 0.000429 |
S | 25 | P25I | CCC | ATT | 1 | 1 | B.1.416 | 0.001269 |
S | 25 | P25del | CCC | --- | 1 | 1 | B.1.429 | 0.000024 |
S | 25 | P25L | cCc | cTc | 1 | 1 | B.1.436 | 0.001029 |
S | 25 | P25L | cCc | cTc | 1 | 1 | B.1.438.1 | 0.000107 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.448 | 0.002625 |
S | 25 | P25P | ccC | ccA | 1 | 1 | B.1.459 | 0.004082 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.466.2 | 0.000391 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | B.1.466.2 | 0.000391 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.467 | 0.04 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.470 | 0.001404 |
S | 25 | P25L | cCc | cTc | 1 | 1 | B.1.470 | 0.001404 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | B.1.499 | 0.00105 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.517 | 0.000427 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.523 | 0.002451 |
S | 25 | P25L | cCc | cTc | 1 | 1 | B.1.561 | 0.000397 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.564 | 0.000426 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.565 | 0.00081 |
S | 25 | P25L | cCc | cTc | 1 | 1 | B.1.576 | 0.000907 |
S | 25 | P25P | ccC | ccG | 1 | 1 | B.1.582 | 0.000491 |
S | 25 | P25P | ccC | ccA | 1 | 1 | B.1.595 | 0.000261 |
S | 25 | P25H | cCc | cAc | 1 | 1 | B.1.596 | 0.000087 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.596.1 | 0.009346 |
S | 25 | P25del | CCC | --- | 1 | 1 | B.1.605 | 0.005952 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.609 | 0.000479 |
S | 25 | P25F | CCc | TTc | 1 | 1 | B.1.617.1 | 0.000129 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | B.1.617.1 | 0.000129 |
S | 25 | P25H | cCc | cAc | 1 | 1 | B.1.617.1 | 0.000129 |
S | 25 | P25L | cCc | cTc | 1 | 1 | B.1.617.1 | 0.000129 |
S | 25 | P25del | CCC | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | B.1.621 | 0.000089 |
S | 25 | P25L | cCc | cTc | 1 | 1 | B.1.621 | 0.000089 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.1.8 | 0.001972 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | B.1.88.1 | 0.004808 |
S | 25 | P25P | ccC | ccT | 1 | 1 | B.13 | 0.045455 |
S | 25 | P25L | cCc | cTc | 1 | 1 | B.23 | 0.002924 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | B.3 | 0.000831 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | B.40 | 0.000364 |
S | 25 | P25P | ccC | ccA | 1 | 1 | B.40 | 0.000364 |
S | 25 | P25L | cCc | cTc | 1 | 1 | B.6 | 0.00091 |
S | 25 | P25L | cCc | cTc | 1 | 1 | C.1 | 0.002392 |
S | 25 | P25L | cCc | cTc | 1 | 1 | C.35 | 0.000774 |
S | 25 | P25L | cCc | cTc | 1 | 1 | D.2 | 0.000075 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | D.2 | 0.000075 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | D.2 | 0.000075 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | N.5 | 0.001767 |
S | 25 | P25del1 | CCc | -Nc | 1 | 1 | P.1 | 0.000016 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | P.1 | 0.000016 |
S | 25 | P25P | ccC | ccT | 1 | 1 | P.1.1 | 0.000318 |
S | 25 | P25P | ccC | ccT | 1 | 1 | P.1.10 | 0.000269 |
S | 25 | P25H | cCc | cAc | 1 | 1 | P.1.14 | 0.000048 |
S | 25 | P25L | cCc | cTc | 1 | 1 | P.1.15 | 0.000232 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | P.1.17 | 0.000162 |
S | 25 | P25P | ccC | ccT | 1 | 1 | P.1.4 | 0.000977 |
S | 25 | P25L | cCc | cTc | 1 | 1 | P.1.7 | 0.000319 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | P.2 | 0.000187 |
S | 25 | P25P | ccC | ccT | 1 | 1 | Q.1 | 0.000126 |
S | 25 | P25L | cCc | cTc | 1 | 1 | Q.1 | 0.000126 |
S | 25 | P25S | Ccc | Tcc | 1 | 1 | Q.2 | 0.000613 |
S | 25 | P25P | ccC | ccT | 1 | 1 | Q.3 | 0.000145 |
S | 25 | P25del1 | Ccc | -cc | 1 | 1 | Q.4 | 0.000455 |
S | 25 | P25L | cCc | cTc | 1 | 1 | Q.4 | 0.000455 |
S | 25 | P25A | Ccc | Gcc | 1 | 1 | Q.4 | 0.000455 |
S | 25 | P25L | cCc | cTc | 1 | 1 | R.1 | 0.00009 |
S | 25 | P25T | Ccc | Acc | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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