CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 249

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S249L249deldelTTG---77827782122307-22309
S249L249SnonsyntTgtCg8558380.98011722307-22309
S249L249SnonsyntTGtCA855120.014035122307-22309
S249L249SnonsyntTGtCT85550.0058479522307-22309
S249L249LsynTtgCtg4072640.64864922307-22309
S249L249LsynttGttA4071390.34152322307-22309
S249L249LsynTtGCtA40720.00491422307-22309
S249L249LsynTtGCtT40720.00491422307-22309
S249L249FnonsynttGttT2542490.98031522307-22309
S249L249FnonsynttGttC25450.01968522307-22309
S249L249VnonsynTtgGtg6363122307-22309
S249L249WnonsyntTgtGg2424122307-22309
S249L249MnonsynTtgAtg1717122307-22309
S249L249del2delTTg--g530.622307-22309
S249L249del2deltTGt--520.422307-22309
S249L249PnonsynTTGCCT420.522307-22309
S249L249PnonsynTTGCCA420.522307-22309
S249L249XnonsyntTgtAg22122307-22309
S249L249EnonsynTTgGAg11122307-22309
S249L249del1delTTG-NN11122307-22309
S249L249InonsynTtGAtA11122307-22309

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S249L249delTTG---77827782All0.001488
S249L249delTTG---74027402C.370.859099
S249L249StTgtCg838855All0.00016
S249L249StTGtCA12855All0.000002
S249L249StTGtCT5855All0.000001
S249L249StTgtCg541541B.1.20.004764
S249L249LTtgCtg264407All0.00005
S249L249LttGttA139407All0.000027
S249L249LTtGCtT2407All0
S249L249LTtGCtA2407All0
S249L249delTTG---267267C.37.10.698953
S249L249FttGttT249254All0.000048
S249L249FttGttC5254All0.000001
S249L249StTgtCg108108B.10.000989
S249L249LTtgCtg8290AY.430.000363
S249L249LttGttA890AY.430.000035
S249L249LTtgCtg7277B.1.617.20.000271
S249L249LttGttA577B.1.617.20.000019
S249L249StTgtCg6767B.1.1600.00209
S249L249VTtgGtg6363All0.000012
S249L249VTtgGtg5252B.1.1.70.000047
S249L249LTtgCtg3636C.350.027864
S249L249FttGttT3334B.1.1.70.00003
S249L249FttGttC134B.1.1.70.000001
S249L249FttGttT3232AY.40.00005
S249L249FttGttT2828AY.4.20.000607
S249L249LTtgCtg2626B.1.10.000472
S249L249LttGttA2626B.1.400.509804
S249L249WtTgtGg2424All0.000005
S249L249LttGttA1919AY.140.001672
S249L249StTgtCg1818AY.440.00011
S249L249LttGttA918B.1.1.70.000008
S249L249LTtgCtg918B.1.1.70.000008
S249L249StTGtCA1218C.370.001393
S249L249StTGtCT518C.370.00058
S249L249StTgtCg118C.370.000116
S249L249delTTG---1818P.1.150.004182
S249L249MTtgAtg1717All0.000003
S249L249FttGttT1616B.1.617.20.00006
S249L249delTTG---1515B.1.1.70.000013
S249L249FttGttT1313AY.250.000078
S249L249FttGttT1313B.1.1770.000171
S249L249WtTgtGg1212AY.430.000053
S249L249FttGttT1111AY.30.000109
S249L249StTgtCg1111B.1.10.0002
S249L249StTgtCg1111B.1.1.70.00001
S249L249delTTG---99B.10.000082
S249L249StTgtCg99B.1.4290.000212
S249L249LttGttA59C.370.00058
S249L249LTtGCtT29C.370.000232
S249L249LTtGCtA29C.370.000232
S249L249LttGttA58AY.390.000124
S249L249LTtgCtg38AY.390.000074
S249L249FttGttT88AY.440.000049
S249L249FttGttT77AY.1020.000186
S249L249LTtgCtg77AY.1160.002007
S249L249LttGttA77AY.250.000042
S249L249FttGttT77AY.290.00011
S249L249delTTG---77AY.430.000031
S249L249StTgtCg77B.1.1110.008226
S249L249StTgtCg77B.1.2580.000466
S249L249MTtgAtg77B.1.4290.000165
S249L249StTgtCg77B.1.5680.007778
S249L249FttGttT66AY.130.000966
S249L249StTgtCg66AY.40.000009
S249L249LttGttA46AY.440.000024
S249L249LTtgCtg26AY.440.000012
S249L249LttGttA66AY.46.60.000433
S249L249FttGttT66B.10.000055
S249L249delTTG---66P.10.000095
S249L249MTtgAtg55A.300.714286
S249L249del2TTg--g35All0.000001
S249L249del2tTGt--25All0
S249L249FttGttT55AY.4.50.000537
S249L249FttGttT55AY.430.000022
S249L249StTgtCg55B.1.5250.000566
S249L249delTTG---55B.1.617.20.000019
S249L249delTTG---55B.1.6210.000443
S249L249FttGttT55C.370.00058
S249L249LttGttA55P.10.000079
S249L249StTgtCg55P.20.000933
S249L249PTTGCCT24All0
S249L249PTTGCCA24All0
S249L249FttGttT44AY.1030.000025
S249L249LttGttA34AY.1210.000406
S249L249LTtgCtg14AY.1210.000135
S249L249delTTG---44AY.250.000024
S249L249delTTG---44AY.290.000063
S249L249LttGttA44AY.40.000006
S249L249FttGttT44AY.46.60.000289
S249L249FttGttT34B.1.10.000054
S249L249FttGttC14B.1.10.000018
S249L249FttGttT44B.1.20.000035
S249L249StTgtCg44B.1.2430.000278
S249L249FttGttT44B.1.3510.000119
S249L249StTgtCg44B.1.617.20.000015
S249L249PTTGCCA24C.370.000232
S249L249PTTGCCT24C.370.000232
S249L249delTTG---33AY.1020.00008
S249L249LTtgCtg33AY.1150.015625
S249L249LttGttA33AY.260.000085
S249L249delTTG---33AY.4.50.000322
S249L249FttGttT33AY.420.000121
S249L249FttGttT33B0.000383
S249L249VTtgGtg33B.10.000027
S249L249WtTgtGg33B.1.1.70.000003
S249L249delTTG---33B.1.1770.00004
S249L249LTtgCtg33B.1.177.330.004934
S249L249LTtgCtg23B.1.20.000018
S249L249LttGttA13B.1.20.000009
S249L249LttGttA33B.1.258.170.000312
S249L249FttGttT33B.1.4260.003027
S249L249delTTG---220.111111
S249L249XtTgtAg22All0
S249L249FttGttT22AY.1000.000092
S249L249LTtgCtg12AY.1030.000006
S249L249LttGttA12AY.1030.000006
S249L249LTtgCtg22AY.1140.000462
S249L249LTtgCtg12AY.1180.000063
S249L249LttGttA12AY.1180.000063
S249L249LTtgCtg22AY.1190.000071
S249L249delTTG---22AY.440.000012
S249L249LTtgCtg22AY.50.000041
S249L249LttGttA12AY.540.000095
S249L249LTtgCtg12AY.540.000095
S249L249LttGttA22AY.610.00021
S249L249LTtgCtg12B.10.000009
S249L249LttGttA12B.10.000009
S249L249delTTG---22B.1.10.000036
S249L249LttGttA22B.1.1.2140.000111
S249L249LttGttA22B.1.1.280.000622
S249L249FttGttT22B.1.1.330.000842
S249L249StTgtCg22B.1.1.5190.000079
S249L249delTTG---22B.1.20.000018
S249L249StTgtCg22B.1.36.290.001035
S249L249delTTG---22B.1.5250.000226
S249L249delTTG---22C.390.037736
S249L249MTtgAtg22D.20.00015
S249L249LttGttA22R.10.00018
S249L249delTTG---11A.2.50.000499
S249L249ITtGAtA11All0
S249L249del1TTG-NN11All0
S249L249ETTgGAg11All0
S249L249delTTG---11AY.1000.000046
S249L249delTTG---11AY.1010.00049
S249L249VTtgGtg11AY.1020.000027
S249L249StTgtCg11AY.1030.000006
S249L249WtTgtGg11AY.1030.000006
S249L249delTTG---11AY.1110.000183
S249L249LTtgCtg11AY.1110.000183
S249L249FttGttT11AY.1130.000142
S249L249FttGttT11AY.1140.000231
S249L249delTTG---11AY.1170.000085
S249L249StTgtCg11AY.1170.000085
S249L249FttGttT11AY.1180.000063
S249L249delTTG---11AY.1180.000063
S249L249FttGttT11AY.120.2.10.000498
S249L249StTgtCg11AY.160.00038
S249L249LttGttA11AY.200.000039
S249L249FttGttT11AY.200.000039
S249L249LttGttA11AY.230.00007
S249L249StTgtCg11AY.230.00007
S249L249StTgtCg11AY.250.000006
S249L249FttGttT11AY.260.000028
S249L249StTgtCg11AY.290.000016
S249L249LttGttA11AY.30.00001
S249L249del2tTGt--11AY.30.00001
S249L249StTgtCg11AY.330.000067
S249L249VTtgGtg11AY.40.000002
S249L249LttGttA11AY.4.20.000022
S249L249StTgtCg11AY.420.00004
S249L249VTtgGtg11AY.420.00004
S249L249WtTgtGg11AY.440.000006
S249L249LTtgCtg11AY.450.000122
S249L249StTgtCg11AY.470.000031
S249L249FttGttT11AY.470.000031
S249L249FttGttT11AY.50.000021
S249L249del2TTg--g11AY.50.000021
S249L249LTtgCtg11AY.5.40.000277
S249L249FttGttT11AY.590.00053
S249L249StTgtCg11AY.60.000041
S249L249FttGttT11AY.610.000105
S249L249delTTG---11AY.650.000533
S249L249LttGttA11AY.740.000116
S249L249LttGttA11AY.750.000056
S249L249StTgtCg11AY.850.000427
S249L249ETTgGAg11AY.850.000427
S249L249LttGttA11AY.9.10.000084
S249L249FttGttT11AY.9.20.000037
S249L249del2tTGt--11AY.9.20.000037
S249L249LttGttA11AY.9.20.000037
S249L249delTTG---11AY.950.000761
S249L249del1TTG-NN11AY.980.000079
S249L249XtTgtAg11B.10.000009
S249L249del2TTg--g11B.10.000009
S249L249delTTG---11B.1.1.10.000327
S249L249delTTG---11B.1.1.1590.004673
S249L249StTgtCg11B.1.1.1890.001513
S249L249StTgtCg11B.1.1.2140.000055
S249L249FttGttT11B.1.1.2160.00089
S249L249XtTgtAg11B.1.1.250.000569
S249L249FttGttT11B.1.1.3110.000358
S249L249WtTgtGg11B.1.1.3180.000302
S249L249FttGttT11B.1.1.3180.000302
S249L249LttGttA11B.1.1.3440.010753
S249L249delTTG---11B.1.1.3480.000796
S249L249StTgtCg11B.1.1.370.000193
S249L249delTTG---11B.1.1.3720.000689
S249L249StTgtCg11B.1.1.390.00051
S249L249WtTgtGg11B.1.1.5190.00004
S249L249delTTG---11B.1.1.5280.004808
S249L249MTtgAtg11B.1.1.70.000001
S249L249ITtGAtA11B.1.1.70.000001
S249L249LTtgCtg11B.1.1.990.02381
S249L249LttGttA11B.1.160.70.002079
S249L249WtTgtGg11B.1.1770.000013
S249L249LTtgCtg11B.1.177.60.000977
S249L249del2TTg--g11B.1.177.600.000218
S249L249delTTG---11B.1.177.690.001484
S249L249FttGttT11B.1.177.750.001041
S249L249delTTG---11B.1.177.760.002494
S249L249LttGttA11B.1.177.870.000728
S249L249StTgtCg11B.1.1870.033333
S249L249VTtgGtg11B.1.20.000009
S249L249FttGttT11B.1.230.006061
S249L249FttGttC11B.1.2320.000537
S249L249FttGttT11B.1.2360.002053
S249L249LttGttA11B.1.2580.000067
S249L249FttGttT11B.1.258.170.000104
S249L249FttGttC11B.1.3110.000275
S249L249StTgtCg11B.1.3110.000275
S249L249WtTgtGg11B.1.3320.003497
S249L249delTTG---11B.1.3510.00003
S249L249FttGttT11B.1.3620.001541
S249L249LTtgCtg11B.1.4270.00005
S249L249FttGttT11B.1.4270.00005
S249L249LttGttA11B.1.4290.000024
S249L249VTtgGtg11B.1.4290.000024
S249L249StTgtCg11B.1.4600.017857
S249L249VTtgGtg11B.1.5260.000024
S249L249delTTG---11B.1.5610.000397
S249L249LttGttA11B.1.5610.000397
S249L249LTtgCtg11B.1.5680.001111
S249L249StTgtCg11B.1.5860.010989
S249L249FttGttC11B.1.5960.000087
S249L249StTgtCg11B.1.5960.000087
S249L249VTtgGtg11B.1.6050.005952
S249L249VTtgGtg11B.1.617.20.000004
S249L249WtTgtGg11B.1.617.20.000004
S249L249delTTG---11B.1.6200.000946
S249L249StTgtCg11B.1.6230.000536
S249L249FttGttT11B.1.6370.000073
S249L249StTgtCg11B.400.000364
S249L249FttGttT11B.580.010204
S249L249StTgtCg11P.10.000016
S249L249delTTG---11P.1.10.000318
S249L249MTtgAtg11P.1.100.000269
S249L249MTtgAtg11P.1.120.000484
S249L249WtTgtGg11P.1.140.000048
S249L249LTtgCtg11Q.70.001111
S249L249WtTgtGg11R.10.00009