CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 249 | L249del | del | TTG | --- | 7782 | 7782 | 1 | 22307-22309 | |
S | 249 | L249S | nonsyn | tTg | tCg | 855 | 838 | 0.980117 | 22307-22309 | |
S | 249 | L249S | nonsyn | tTG | tCA | 855 | 12 | 0.0140351 | 22307-22309 | |
S | 249 | L249S | nonsyn | tTG | tCT | 855 | 5 | 0.00584795 | 22307-22309 | |
S | 249 | L249L | syn | Ttg | Ctg | 407 | 264 | 0.648649 | 22307-22309 | |
S | 249 | L249L | syn | ttG | ttA | 407 | 139 | 0.341523 | 22307-22309 | |
S | 249 | L249L | syn | TtG | CtA | 407 | 2 | 0.004914 | 22307-22309 | |
S | 249 | L249L | syn | TtG | CtT | 407 | 2 | 0.004914 | 22307-22309 | |
S | 249 | L249F | nonsyn | ttG | ttT | 254 | 249 | 0.980315 | 22307-22309 | |
S | 249 | L249F | nonsyn | ttG | ttC | 254 | 5 | 0.019685 | 22307-22309 | |
S | 249 | L249V | nonsyn | Ttg | Gtg | 63 | 63 | 1 | 22307-22309 | |
S | 249 | L249W | nonsyn | tTg | tGg | 24 | 24 | 1 | 22307-22309 | |
S | 249 | L249M | nonsyn | Ttg | Atg | 17 | 17 | 1 | 22307-22309 | |
S | 249 | L249del2 | del | TTg | --g | 5 | 3 | 0.6 | 22307-22309 | |
S | 249 | L249del2 | del | tTG | t-- | 5 | 2 | 0.4 | 22307-22309 | |
S | 249 | L249P | nonsyn | TTG | CCT | 4 | 2 | 0.5 | 22307-22309 | |
S | 249 | L249P | nonsyn | TTG | CCA | 4 | 2 | 0.5 | 22307-22309 | |
S | 249 | L249X | nonsyn | tTg | tAg | 2 | 2 | 1 | 22307-22309 | |
S | 249 | L249E | nonsyn | TTg | GAg | 1 | 1 | 1 | 22307-22309 | |
S | 249 | L249del1 | del | TTG | -NN | 1 | 1 | 1 | 22307-22309 | |
S | 249 | L249I | nonsyn | TtG | AtA | 1 | 1 | 1 | 22307-22309 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 249 | L249del | TTG | --- | 7782 | 7782 | All | 0.001488 |
S | 249 | L249del | TTG | --- | 7402 | 7402 | C.37 | 0.859099 |
S | 249 | L249S | tTg | tCg | 838 | 855 | All | 0.00016 |
S | 249 | L249S | tTG | tCA | 12 | 855 | All | 0.000002 |
S | 249 | L249S | tTG | tCT | 5 | 855 | All | 0.000001 |
S | 249 | L249S | tTg | tCg | 541 | 541 | B.1.2 | 0.004764 |
S | 249 | L249L | Ttg | Ctg | 264 | 407 | All | 0.00005 |
S | 249 | L249L | ttG | ttA | 139 | 407 | All | 0.000027 |
S | 249 | L249L | TtG | CtT | 2 | 407 | All | 0 |
S | 249 | L249L | TtG | CtA | 2 | 407 | All | 0 |
S | 249 | L249del | TTG | --- | 267 | 267 | C.37.1 | 0.698953 |
S | 249 | L249F | ttG | ttT | 249 | 254 | All | 0.000048 |
S | 249 | L249F | ttG | ttC | 5 | 254 | All | 0.000001 |
S | 249 | L249S | tTg | tCg | 108 | 108 | B.1 | 0.000989 |
S | 249 | L249L | Ttg | Ctg | 82 | 90 | AY.43 | 0.000363 |
S | 249 | L249L | ttG | ttA | 8 | 90 | AY.43 | 0.000035 |
S | 249 | L249L | Ttg | Ctg | 72 | 77 | B.1.617.2 | 0.000271 |
S | 249 | L249L | ttG | ttA | 5 | 77 | B.1.617.2 | 0.000019 |
S | 249 | L249S | tTg | tCg | 67 | 67 | B.1.160 | 0.00209 |
S | 249 | L249V | Ttg | Gtg | 63 | 63 | All | 0.000012 |
S | 249 | L249V | Ttg | Gtg | 52 | 52 | B.1.1.7 | 0.000047 |
S | 249 | L249L | Ttg | Ctg | 36 | 36 | C.35 | 0.027864 |
S | 249 | L249F | ttG | ttT | 33 | 34 | B.1.1.7 | 0.00003 |
S | 249 | L249F | ttG | ttC | 1 | 34 | B.1.1.7 | 0.000001 |
S | 249 | L249F | ttG | ttT | 32 | 32 | AY.4 | 0.00005 |
S | 249 | L249F | ttG | ttT | 28 | 28 | AY.4.2 | 0.000607 |
S | 249 | L249L | Ttg | Ctg | 26 | 26 | B.1.1 | 0.000472 |
S | 249 | L249L | ttG | ttA | 26 | 26 | B.1.40 | 0.509804 |
S | 249 | L249W | tTg | tGg | 24 | 24 | All | 0.000005 |
S | 249 | L249L | ttG | ttA | 19 | 19 | AY.14 | 0.001672 |
S | 249 | L249S | tTg | tCg | 18 | 18 | AY.44 | 0.00011 |
S | 249 | L249L | ttG | ttA | 9 | 18 | B.1.1.7 | 0.000008 |
S | 249 | L249L | Ttg | Ctg | 9 | 18 | B.1.1.7 | 0.000008 |
S | 249 | L249S | tTG | tCA | 12 | 18 | C.37 | 0.001393 |
S | 249 | L249S | tTG | tCT | 5 | 18 | C.37 | 0.00058 |
S | 249 | L249S | tTg | tCg | 1 | 18 | C.37 | 0.000116 |
S | 249 | L249del | TTG | --- | 18 | 18 | P.1.15 | 0.004182 |
S | 249 | L249M | Ttg | Atg | 17 | 17 | All | 0.000003 |
S | 249 | L249F | ttG | ttT | 16 | 16 | B.1.617.2 | 0.00006 |
S | 249 | L249del | TTG | --- | 15 | 15 | B.1.1.7 | 0.000013 |
S | 249 | L249F | ttG | ttT | 13 | 13 | AY.25 | 0.000078 |
S | 249 | L249F | ttG | ttT | 13 | 13 | B.1.177 | 0.000171 |
S | 249 | L249W | tTg | tGg | 12 | 12 | AY.43 | 0.000053 |
S | 249 | L249F | ttG | ttT | 11 | 11 | AY.3 | 0.000109 |
S | 249 | L249S | tTg | tCg | 11 | 11 | B.1.1 | 0.0002 |
S | 249 | L249S | tTg | tCg | 11 | 11 | B.1.1.7 | 0.00001 |
S | 249 | L249del | TTG | --- | 9 | 9 | B.1 | 0.000082 |
S | 249 | L249S | tTg | tCg | 9 | 9 | B.1.429 | 0.000212 |
S | 249 | L249L | ttG | ttA | 5 | 9 | C.37 | 0.00058 |
S | 249 | L249L | TtG | CtT | 2 | 9 | C.37 | 0.000232 |
S | 249 | L249L | TtG | CtA | 2 | 9 | C.37 | 0.000232 |
S | 249 | L249L | ttG | ttA | 5 | 8 | AY.39 | 0.000124 |
S | 249 | L249L | Ttg | Ctg | 3 | 8 | AY.39 | 0.000074 |
S | 249 | L249F | ttG | ttT | 8 | 8 | AY.44 | 0.000049 |
S | 249 | L249F | ttG | ttT | 7 | 7 | AY.102 | 0.000186 |
S | 249 | L249L | Ttg | Ctg | 7 | 7 | AY.116 | 0.002007 |
S | 249 | L249L | ttG | ttA | 7 | 7 | AY.25 | 0.000042 |
S | 249 | L249F | ttG | ttT | 7 | 7 | AY.29 | 0.00011 |
S | 249 | L249del | TTG | --- | 7 | 7 | AY.43 | 0.000031 |
S | 249 | L249S | tTg | tCg | 7 | 7 | B.1.111 | 0.008226 |
S | 249 | L249S | tTg | tCg | 7 | 7 | B.1.258 | 0.000466 |
S | 249 | L249M | Ttg | Atg | 7 | 7 | B.1.429 | 0.000165 |
S | 249 | L249S | tTg | tCg | 7 | 7 | B.1.568 | 0.007778 |
S | 249 | L249F | ttG | ttT | 6 | 6 | AY.13 | 0.000966 |
S | 249 | L249S | tTg | tCg | 6 | 6 | AY.4 | 0.000009 |
S | 249 | L249L | ttG | ttA | 4 | 6 | AY.44 | 0.000024 |
S | 249 | L249L | Ttg | Ctg | 2 | 6 | AY.44 | 0.000012 |
S | 249 | L249L | ttG | ttA | 6 | 6 | AY.46.6 | 0.000433 |
S | 249 | L249F | ttG | ttT | 6 | 6 | B.1 | 0.000055 |
S | 249 | L249del | TTG | --- | 6 | 6 | P.1 | 0.000095 |
S | 249 | L249M | Ttg | Atg | 5 | 5 | A.30 | 0.714286 |
S | 249 | L249del2 | TTg | --g | 3 | 5 | All | 0.000001 |
S | 249 | L249del2 | tTG | t-- | 2 | 5 | All | 0 |
S | 249 | L249F | ttG | ttT | 5 | 5 | AY.4.5 | 0.000537 |
S | 249 | L249F | ttG | ttT | 5 | 5 | AY.43 | 0.000022 |
S | 249 | L249S | tTg | tCg | 5 | 5 | B.1.525 | 0.000566 |
S | 249 | L249del | TTG | --- | 5 | 5 | B.1.617.2 | 0.000019 |
S | 249 | L249del | TTG | --- | 5 | 5 | B.1.621 | 0.000443 |
S | 249 | L249F | ttG | ttT | 5 | 5 | C.37 | 0.00058 |
S | 249 | L249L | ttG | ttA | 5 | 5 | P.1 | 0.000079 |
S | 249 | L249S | tTg | tCg | 5 | 5 | P.2 | 0.000933 |
S | 249 | L249P | TTG | CCT | 2 | 4 | All | 0 |
S | 249 | L249P | TTG | CCA | 2 | 4 | All | 0 |
S | 249 | L249F | ttG | ttT | 4 | 4 | AY.103 | 0.000025 |
S | 249 | L249L | ttG | ttA | 3 | 4 | AY.121 | 0.000406 |
S | 249 | L249L | Ttg | Ctg | 1 | 4 | AY.121 | 0.000135 |
S | 249 | L249del | TTG | --- | 4 | 4 | AY.25 | 0.000024 |
S | 249 | L249del | TTG | --- | 4 | 4 | AY.29 | 0.000063 |
S | 249 | L249L | ttG | ttA | 4 | 4 | AY.4 | 0.000006 |
S | 249 | L249F | ttG | ttT | 4 | 4 | AY.46.6 | 0.000289 |
S | 249 | L249F | ttG | ttT | 3 | 4 | B.1.1 | 0.000054 |
S | 249 | L249F | ttG | ttC | 1 | 4 | B.1.1 | 0.000018 |
S | 249 | L249F | ttG | ttT | 4 | 4 | B.1.2 | 0.000035 |
S | 249 | L249S | tTg | tCg | 4 | 4 | B.1.243 | 0.000278 |
S | 249 | L249F | ttG | ttT | 4 | 4 | B.1.351 | 0.000119 |
S | 249 | L249S | tTg | tCg | 4 | 4 | B.1.617.2 | 0.000015 |
S | 249 | L249P | TTG | CCA | 2 | 4 | C.37 | 0.000232 |
S | 249 | L249P | TTG | CCT | 2 | 4 | C.37 | 0.000232 |
S | 249 | L249del | TTG | --- | 3 | 3 | AY.102 | 0.00008 |
S | 249 | L249L | Ttg | Ctg | 3 | 3 | AY.115 | 0.015625 |
S | 249 | L249L | ttG | ttA | 3 | 3 | AY.26 | 0.000085 |
S | 249 | L249del | TTG | --- | 3 | 3 | AY.4.5 | 0.000322 |
S | 249 | L249F | ttG | ttT | 3 | 3 | AY.42 | 0.000121 |
S | 249 | L249F | ttG | ttT | 3 | 3 | B | 0.000383 |
S | 249 | L249V | Ttg | Gtg | 3 | 3 | B.1 | 0.000027 |
S | 249 | L249W | tTg | tGg | 3 | 3 | B.1.1.7 | 0.000003 |
S | 249 | L249del | TTG | --- | 3 | 3 | B.1.177 | 0.00004 |
S | 249 | L249L | Ttg | Ctg | 3 | 3 | B.1.177.33 | 0.004934 |
S | 249 | L249L | Ttg | Ctg | 2 | 3 | B.1.2 | 0.000018 |
S | 249 | L249L | ttG | ttA | 1 | 3 | B.1.2 | 0.000009 |
S | 249 | L249L | ttG | ttA | 3 | 3 | B.1.258.17 | 0.000312 |
S | 249 | L249F | ttG | ttT | 3 | 3 | B.1.426 | 0.003027 |
S | 249 | L249del | TTG | --- | 2 | 2 | 0.111111 | |
S | 249 | L249X | tTg | tAg | 2 | 2 | All | 0 |
S | 249 | L249F | ttG | ttT | 2 | 2 | AY.100 | 0.000092 |
S | 249 | L249L | Ttg | Ctg | 1 | 2 | AY.103 | 0.000006 |
S | 249 | L249L | ttG | ttA | 1 | 2 | AY.103 | 0.000006 |
S | 249 | L249L | Ttg | Ctg | 2 | 2 | AY.114 | 0.000462 |
S | 249 | L249L | Ttg | Ctg | 1 | 2 | AY.118 | 0.000063 |
S | 249 | L249L | ttG | ttA | 1 | 2 | AY.118 | 0.000063 |
S | 249 | L249L | Ttg | Ctg | 2 | 2 | AY.119 | 0.000071 |
S | 249 | L249del | TTG | --- | 2 | 2 | AY.44 | 0.000012 |
S | 249 | L249L | Ttg | Ctg | 2 | 2 | AY.5 | 0.000041 |
S | 249 | L249L | ttG | ttA | 1 | 2 | AY.54 | 0.000095 |
S | 249 | L249L | Ttg | Ctg | 1 | 2 | AY.54 | 0.000095 |
S | 249 | L249L | ttG | ttA | 2 | 2 | AY.61 | 0.00021 |
S | 249 | L249L | Ttg | Ctg | 1 | 2 | B.1 | 0.000009 |
S | 249 | L249L | ttG | ttA | 1 | 2 | B.1 | 0.000009 |
S | 249 | L249del | TTG | --- | 2 | 2 | B.1.1 | 0.000036 |
S | 249 | L249L | ttG | ttA | 2 | 2 | B.1.1.214 | 0.000111 |
S | 249 | L249L | ttG | ttA | 2 | 2 | B.1.1.28 | 0.000622 |
S | 249 | L249F | ttG | ttT | 2 | 2 | B.1.1.33 | 0.000842 |
S | 249 | L249S | tTg | tCg | 2 | 2 | B.1.1.519 | 0.000079 |
S | 249 | L249del | TTG | --- | 2 | 2 | B.1.2 | 0.000018 |
S | 249 | L249S | tTg | tCg | 2 | 2 | B.1.36.29 | 0.001035 |
S | 249 | L249del | TTG | --- | 2 | 2 | B.1.525 | 0.000226 |
S | 249 | L249del | TTG | --- | 2 | 2 | C.39 | 0.037736 |
S | 249 | L249M | Ttg | Atg | 2 | 2 | D.2 | 0.00015 |
S | 249 | L249L | ttG | ttA | 2 | 2 | R.1 | 0.00018 |
S | 249 | L249del | TTG | --- | 1 | 1 | A.2.5 | 0.000499 |
S | 249 | L249I | TtG | AtA | 1 | 1 | All | 0 |
S | 249 | L249del1 | TTG | -NN | 1 | 1 | All | 0 |
S | 249 | L249E | TTg | GAg | 1 | 1 | All | 0 |
S | 249 | L249del | TTG | --- | 1 | 1 | AY.100 | 0.000046 |
S | 249 | L249del | TTG | --- | 1 | 1 | AY.101 | 0.00049 |
S | 249 | L249V | Ttg | Gtg | 1 | 1 | AY.102 | 0.000027 |
S | 249 | L249S | tTg | tCg | 1 | 1 | AY.103 | 0.000006 |
S | 249 | L249W | tTg | tGg | 1 | 1 | AY.103 | 0.000006 |
S | 249 | L249del | TTG | --- | 1 | 1 | AY.111 | 0.000183 |
S | 249 | L249L | Ttg | Ctg | 1 | 1 | AY.111 | 0.000183 |
S | 249 | L249F | ttG | ttT | 1 | 1 | AY.113 | 0.000142 |
S | 249 | L249F | ttG | ttT | 1 | 1 | AY.114 | 0.000231 |
S | 249 | L249del | TTG | --- | 1 | 1 | AY.117 | 0.000085 |
S | 249 | L249S | tTg | tCg | 1 | 1 | AY.117 | 0.000085 |
S | 249 | L249F | ttG | ttT | 1 | 1 | AY.118 | 0.000063 |
S | 249 | L249del | TTG | --- | 1 | 1 | AY.118 | 0.000063 |
S | 249 | L249F | ttG | ttT | 1 | 1 | AY.120.2.1 | 0.000498 |
S | 249 | L249S | tTg | tCg | 1 | 1 | AY.16 | 0.00038 |
S | 249 | L249L | ttG | ttA | 1 | 1 | AY.20 | 0.000039 |
S | 249 | L249F | ttG | ttT | 1 | 1 | AY.20 | 0.000039 |
S | 249 | L249L | ttG | ttA | 1 | 1 | AY.23 | 0.00007 |
S | 249 | L249S | tTg | tCg | 1 | 1 | AY.23 | 0.00007 |
S | 249 | L249S | tTg | tCg | 1 | 1 | AY.25 | 0.000006 |
S | 249 | L249F | ttG | ttT | 1 | 1 | AY.26 | 0.000028 |
S | 249 | L249S | tTg | tCg | 1 | 1 | AY.29 | 0.000016 |
S | 249 | L249L | ttG | ttA | 1 | 1 | AY.3 | 0.00001 |
S | 249 | L249del2 | tTG | t-- | 1 | 1 | AY.3 | 0.00001 |
S | 249 | L249S | tTg | tCg | 1 | 1 | AY.33 | 0.000067 |
S | 249 | L249V | Ttg | Gtg | 1 | 1 | AY.4 | 0.000002 |
S | 249 | L249L | ttG | ttA | 1 | 1 | AY.4.2 | 0.000022 |
S | 249 | L249S | tTg | tCg | 1 | 1 | AY.42 | 0.00004 |
S | 249 | L249V | Ttg | Gtg | 1 | 1 | AY.42 | 0.00004 |
S | 249 | L249W | tTg | tGg | 1 | 1 | AY.44 | 0.000006 |
S | 249 | L249L | Ttg | Ctg | 1 | 1 | AY.45 | 0.000122 |
S | 249 | L249S | tTg | tCg | 1 | 1 | AY.47 | 0.000031 |
S | 249 | L249F | ttG | ttT | 1 | 1 | AY.47 | 0.000031 |
S | 249 | L249F | ttG | ttT | 1 | 1 | AY.5 | 0.000021 |
S | 249 | L249del2 | TTg | --g | 1 | 1 | AY.5 | 0.000021 |
S | 249 | L249L | Ttg | Ctg | 1 | 1 | AY.5.4 | 0.000277 |
S | 249 | L249F | ttG | ttT | 1 | 1 | AY.59 | 0.00053 |
S | 249 | L249S | tTg | tCg | 1 | 1 | AY.6 | 0.000041 |
S | 249 | L249F | ttG | ttT | 1 | 1 | AY.61 | 0.000105 |
S | 249 | L249del | TTG | --- | 1 | 1 | AY.65 | 0.000533 |
S | 249 | L249L | ttG | ttA | 1 | 1 | AY.74 | 0.000116 |
S | 249 | L249L | ttG | ttA | 1 | 1 | AY.75 | 0.000056 |
S | 249 | L249S | tTg | tCg | 1 | 1 | AY.85 | 0.000427 |
S | 249 | L249E | TTg | GAg | 1 | 1 | AY.85 | 0.000427 |
S | 249 | L249L | ttG | ttA | 1 | 1 | AY.9.1 | 0.000084 |
S | 249 | L249F | ttG | ttT | 1 | 1 | AY.9.2 | 0.000037 |
S | 249 | L249del2 | tTG | t-- | 1 | 1 | AY.9.2 | 0.000037 |
S | 249 | L249L | ttG | ttA | 1 | 1 | AY.9.2 | 0.000037 |
S | 249 | L249del | TTG | --- | 1 | 1 | AY.95 | 0.000761 |
S | 249 | L249del1 | TTG | -NN | 1 | 1 | AY.98 | 0.000079 |
S | 249 | L249X | tTg | tAg | 1 | 1 | B.1 | 0.000009 |
S | 249 | L249del2 | TTg | --g | 1 | 1 | B.1 | 0.000009 |
S | 249 | L249del | TTG | --- | 1 | 1 | B.1.1.1 | 0.000327 |
S | 249 | L249del | TTG | --- | 1 | 1 | B.1.1.159 | 0.004673 |
S | 249 | L249S | tTg | tCg | 1 | 1 | B.1.1.189 | 0.001513 |
S | 249 | L249S | tTg | tCg | 1 | 1 | B.1.1.214 | 0.000055 |
S | 249 | L249F | ttG | ttT | 1 | 1 | B.1.1.216 | 0.00089 |
S | 249 | L249X | tTg | tAg | 1 | 1 | B.1.1.25 | 0.000569 |
S | 249 | L249F | ttG | ttT | 1 | 1 | B.1.1.311 | 0.000358 |
S | 249 | L249W | tTg | tGg | 1 | 1 | B.1.1.318 | 0.000302 |
S | 249 | L249F | ttG | ttT | 1 | 1 | B.1.1.318 | 0.000302 |
S | 249 | L249L | ttG | ttA | 1 | 1 | B.1.1.344 | 0.010753 |
S | 249 | L249del | TTG | --- | 1 | 1 | B.1.1.348 | 0.000796 |
S | 249 | L249S | tTg | tCg | 1 | 1 | B.1.1.37 | 0.000193 |
S | 249 | L249del | TTG | --- | 1 | 1 | B.1.1.372 | 0.000689 |
S | 249 | L249S | tTg | tCg | 1 | 1 | B.1.1.39 | 0.00051 |
S | 249 | L249W | tTg | tGg | 1 | 1 | B.1.1.519 | 0.00004 |
S | 249 | L249del | TTG | --- | 1 | 1 | B.1.1.528 | 0.004808 |
S | 249 | L249M | Ttg | Atg | 1 | 1 | B.1.1.7 | 0.000001 |
S | 249 | L249I | TtG | AtA | 1 | 1 | B.1.1.7 | 0.000001 |
S | 249 | L249L | Ttg | Ctg | 1 | 1 | B.1.1.99 | 0.02381 |
S | 249 | L249L | ttG | ttA | 1 | 1 | B.1.160.7 | 0.002079 |
S | 249 | L249W | tTg | tGg | 1 | 1 | B.1.177 | 0.000013 |
S | 249 | L249L | Ttg | Ctg | 1 | 1 | B.1.177.6 | 0.000977 |
S | 249 | L249del2 | TTg | --g | 1 | 1 | B.1.177.60 | 0.000218 |
S | 249 | L249del | TTG | --- | 1 | 1 | B.1.177.69 | 0.001484 |
S | 249 | L249F | ttG | ttT | 1 | 1 | B.1.177.75 | 0.001041 |
S | 249 | L249del | TTG | --- | 1 | 1 | B.1.177.76 | 0.002494 |
S | 249 | L249L | ttG | ttA | 1 | 1 | B.1.177.87 | 0.000728 |
S | 249 | L249S | tTg | tCg | 1 | 1 | B.1.187 | 0.033333 |
S | 249 | L249V | Ttg | Gtg | 1 | 1 | B.1.2 | 0.000009 |
S | 249 | L249F | ttG | ttT | 1 | 1 | B.1.23 | 0.006061 |
S | 249 | L249F | ttG | ttC | 1 | 1 | B.1.232 | 0.000537 |
S | 249 | L249F | ttG | ttT | 1 | 1 | B.1.236 | 0.002053 |
S | 249 | L249L | ttG | ttA | 1 | 1 | B.1.258 | 0.000067 |
S | 249 | L249F | ttG | ttT | 1 | 1 | B.1.258.17 | 0.000104 |
S | 249 | L249F | ttG | ttC | 1 | 1 | B.1.311 | 0.000275 |
S | 249 | L249S | tTg | tCg | 1 | 1 | B.1.311 | 0.000275 |
S | 249 | L249W | tTg | tGg | 1 | 1 | B.1.332 | 0.003497 |
S | 249 | L249del | TTG | --- | 1 | 1 | B.1.351 | 0.00003 |
S | 249 | L249F | ttG | ttT | 1 | 1 | B.1.362 | 0.001541 |
S | 249 | L249L | Ttg | Ctg | 1 | 1 | B.1.427 | 0.00005 |
S | 249 | L249F | ttG | ttT | 1 | 1 | B.1.427 | 0.00005 |
S | 249 | L249L | ttG | ttA | 1 | 1 | B.1.429 | 0.000024 |
S | 249 | L249V | Ttg | Gtg | 1 | 1 | B.1.429 | 0.000024 |
S | 249 | L249S | tTg | tCg | 1 | 1 | B.1.460 | 0.017857 |
S | 249 | L249V | Ttg | Gtg | 1 | 1 | B.1.526 | 0.000024 |
S | 249 | L249del | TTG | --- | 1 | 1 | B.1.561 | 0.000397 |
S | 249 | L249L | ttG | ttA | 1 | 1 | B.1.561 | 0.000397 |
S | 249 | L249L | Ttg | Ctg | 1 | 1 | B.1.568 | 0.001111 |
S | 249 | L249S | tTg | tCg | 1 | 1 | B.1.586 | 0.010989 |
S | 249 | L249F | ttG | ttC | 1 | 1 | B.1.596 | 0.000087 |
S | 249 | L249S | tTg | tCg | 1 | 1 | B.1.596 | 0.000087 |
S | 249 | L249V | Ttg | Gtg | 1 | 1 | B.1.605 | 0.005952 |
S | 249 | L249V | Ttg | Gtg | 1 | 1 | B.1.617.2 | 0.000004 |
S | 249 | L249W | tTg | tGg | 1 | 1 | B.1.617.2 | 0.000004 |
S | 249 | L249del | TTG | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 249 | L249S | tTg | tCg | 1 | 1 | B.1.623 | 0.000536 |
S | 249 | L249F | ttG | ttT | 1 | 1 | B.1.637 | 0.000073 |
S | 249 | L249S | tTg | tCg | 1 | 1 | B.40 | 0.000364 |
S | 249 | L249F | ttG | ttT | 1 | 1 | B.58 | 0.010204 |
S | 249 | L249S | tTg | tCg | 1 | 1 | P.1 | 0.000016 |
S | 249 | L249del | TTG | --- | 1 | 1 | P.1.1 | 0.000318 |
S | 249 | L249M | Ttg | Atg | 1 | 1 | P.1.10 | 0.000269 |
S | 249 | L249M | Ttg | Atg | 1 | 1 | P.1.12 | 0.000484 |
S | 249 | L249W | tTg | tGg | 1 | 1 | P.1.14 | 0.000048 |
S | 249 | L249L | Ttg | Ctg | 1 | 1 | Q.7 | 0.001111 |
S | 249 | L249W | tTg | tGg | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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