CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 248 | Y248del | del | TAT | --- | 7920 | 7920 | 1 | 22304-22306 | |
S | 248 | Y248H | nonsyn | Tat | Cat | 3025 | 3024 | 0.999669 | 22304-22306 | |
S | 248 | Y248H | nonsyn | TaT | CaC | 3025 | 1 | 0.000330579 | 22304-22306 | |
S | 248 | Y248Y | syn | taT | taC | 306 | 306 | 1 | 22304-22306 | |
S | 248 | Y248S | nonsyn | tAt | tCt | 163 | 163 | 1 | 22304-22306 | |
S | 248 | Y248C | nonsyn | tAt | tGt | 91 | 91 | 1 | 22304-22306 | |
S | 248 | Y248N | nonsyn | Tat | Aat | 48 | 48 | 1 | 22304-22306 | |
S | 248 | Y248F | nonsyn | tAt | tTt | 21 | 21 | 1 | 22304-22306 | |
S | 248 | Y248D | nonsyn | Tat | Gat | 8 | 8 | 1 | 22304-22306 | |
S | 248 | Y248del1 | del | taT | ta- | 6 | 5 | 0.833333 | 22304-22306 | |
S | 248 | Y248del1 | del | tAT | tG- | 6 | 1 | 0.166667 | 22304-22306 | |
S | 248 | Y248X | nonsyn | taT | taG | 4 | 3 | 0.75 | 22304-22306 | |
S | 248 | Y248X | nonsyn | taT | taA | 4 | 1 | 0.25 | 22304-22306 | |
S | 248 | Y248T | nonsyn | TAT | ACG | 1 | 1 | 1 | 22304-22306 | |
S | 248 | Y248E | nonsyn | TaT | GaA | 1 | 1 | 1 | 22304-22306 | |
S | 248 | Y248Q | nonsyn | TaT | CaA | 1 | 1 | 1 | 22304-22306 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 248 | Y248del | TAT | --- | 7920 | 7920 | All | 0.001515 |
S | 248 | Y248del | TAT | --- | 7402 | 7402 | C.37 | 0.859099 |
S | 248 | Y248H | Tat | Cat | 3024 | 3025 | All | 0.000578 |
S | 248 | Y248H | TaT | CaC | 1 | 3025 | All | 0 |
S | 248 | Y248H | Tat | Cat | 2627 | 2627 | AY.4 | 0.004089 |
S | 248 | Y248Y | taT | taC | 306 | 306 | All | 0.000059 |
S | 248 | Y248del | TAT | --- | 267 | 267 | C.37.1 | 0.698953 |
S | 248 | Y248S | tAt | tCt | 163 | 163 | All | 0.000031 |
S | 248 | Y248H | Tat | Cat | 101 | 101 | B.1.617.2 | 0.00038 |
S | 248 | Y248Y | taT | taC | 94 | 94 | B.1.1.7 | 0.000084 |
S | 248 | Y248C | tAt | tGt | 91 | 91 | All | 0.000017 |
S | 248 | Y248H | Tat | Cat | 78 | 79 | B.1.1.7 | 0.00007 |
S | 248 | Y248H | TaT | CaC | 1 | 79 | B.1.1.7 | 0.000001 |
S | 248 | Y248del | TAT | --- | 63 | 63 | B.1.243.2 | 0.913043 |
S | 248 | Y248S | tAt | tCt | 60 | 60 | AY.44 | 0.000365 |
S | 248 | Y248N | Tat | Aat | 48 | 48 | All | 0.000009 |
S | 248 | Y248C | tAt | tGt | 41 | 41 | AY.4 | 0.000064 |
S | 248 | Y248H | Tat | Cat | 33 | 33 | B.1.1 | 0.000599 |
S | 248 | Y248del | TAT | --- | 28 | 28 | B.1.1.7 | 0.000025 |
S | 248 | Y248Y | taT | taC | 27 | 27 | AY.67 | 0.012535 |
S | 248 | Y248Y | taT | taC | 24 | 24 | AY.4 | 0.000037 |
S | 248 | Y248H | Tat | Cat | 23 | 23 | AY.108 | 0.025358 |
S | 248 | Y248F | tAt | tTt | 21 | 21 | All | 0.000004 |
S | 248 | Y248S | tAt | tCt | 20 | 20 | B.1.429 | 0.000471 |
S | 248 | Y248del | TAT | --- | 19 | 19 | P.1.15 | 0.004414 |
S | 248 | Y248H | Tat | Cat | 18 | 18 | AY.43 | 0.00008 |
S | 248 | Y248H | Tat | Cat | 17 | 17 | B.1 | 0.000156 |
S | 248 | Y248Y | taT | taC | 16 | 16 | B.1.1.464 | 0.023564 |
S | 248 | Y248S | tAt | tCt | 16 | 16 | B.1.1.519 | 0.000635 |
S | 248 | Y248Y | taT | taC | 15 | 15 | AY.25 | 0.00009 |
S | 248 | Y248del | TAT | --- | 14 | 14 | B.1.351.3 | 0.01227 |
S | 248 | Y248Y | taT | taC | 13 | 13 | AY.44 | 0.000079 |
S | 248 | Y248del | TAT | --- | 13 | 13 | B.1 | 0.000119 |
S | 248 | Y248Y | taT | taC | 13 | 13 | B.1.2 | 0.000114 |
S | 248 | Y248Y | taT | taC | 12 | 12 | AY.98.1 | 0.000581 |
S | 248 | Y248Y | taT | taC | 12 | 12 | B.1.267 | 0.222222 |
S | 248 | Y248H | Tat | Cat | 10 | 10 | AY.20 | 0.000389 |
S | 248 | Y248H | Tat | Cat | 10 | 10 | B.1.466.2 | 0.003912 |
S | 248 | Y248Y | taT | taC | 10 | 10 | B.1.617.2 | 0.000038 |
S | 248 | Y248N | Tat | Aat | 10 | 10 | B.1.639 | 0.217391 |
S | 248 | Y248S | tAt | tCt | 10 | 10 | C.37 | 0.001161 |
S | 248 | Y248H | Tat | Cat | 9 | 9 | AY.42 | 0.000362 |
S | 248 | Y248S | tAt | tCt | 9 | 9 | B.1 | 0.000082 |
S | 248 | Y248C | tAt | tGt | 9 | 9 | B.1.1.7 | 0.000008 |
S | 248 | Y248H | Tat | Cat | 9 | 9 | B.1.2 | 0.000079 |
S | 248 | Y248Y | taT | taC | 9 | 9 | B.1.525 | 0.001018 |
S | 248 | Y248D | Tat | Gat | 8 | 8 | All | 0.000002 |
S | 248 | Y248F | tAt | tTt | 8 | 8 | AY.4 | 0.000012 |
S | 248 | Y248Y | taT | taC | 7 | 7 | AY.26 | 0.000198 |
S | 248 | Y248H | Tat | Cat | 7 | 7 | AY.39 | 0.000173 |
S | 248 | Y248del | TAT | --- | 7 | 7 | AY.43 | 0.000031 |
S | 248 | Y248del | TAT | --- | 7 | 7 | B.1.429 | 0.000165 |
S | 248 | Y248N | Tat | Aat | 7 | 7 | B.1.526 | 0.000165 |
S | 248 | Y248del1 | taT | ta- | 5 | 6 | All | 0.000001 |
S | 248 | Y248del1 | tAT | tG- | 1 | 6 | All | 0 |
S | 248 | Y248S | tAt | tCt | 6 | 6 | AY.4 | 0.000009 |
S | 248 | Y248H | Tat | Cat | 6 | 6 | AY.76 | 0.028986 |
S | 248 | Y248Y | taT | taC | 6 | 6 | AY.91 | 0.004383 |
S | 248 | Y248Y | taT | taC | 6 | 6 | B.1.420 | 0.0625 |
S | 248 | Y248del | TAT | --- | 6 | 6 | P.1 | 0.000095 |
S | 248 | Y248del | TAT | --- | 5 | 5 | A.30 | 0.714286 |
S | 248 | Y248H | Tat | Cat | 5 | 5 | AY.61 | 0.000524 |
S | 248 | Y248H | Tat | Cat | 5 | 5 | B.1.1.25 | 0.002843 |
S | 248 | Y248C | tAt | tGt | 5 | 5 | B.1.2 | 0.000044 |
S | 248 | Y248S | tAt | tCt | 5 | 5 | B.1.258 | 0.000333 |
S | 248 | Y248Y | taT | taC | 5 | 5 | B.1.351 | 0.000149 |
S | 248 | Y248N | Tat | Aat | 5 | 5 | B.1.351 | 0.000149 |
S | 248 | Y248del | TAT | --- | 5 | 5 | B.1.617.2 | 0.000019 |
S | 248 | Y248del | TAT | --- | 5 | 5 | B.1.621 | 0.000443 |
S | 248 | Y248X | taT | taG | 3 | 4 | All | 0.000001 |
S | 248 | Y248X | taT | taA | 1 | 4 | All | 0 |
S | 248 | Y248C | tAt | tGt | 4 | 4 | AY.103 | 0.000025 |
S | 248 | Y248del | TAT | --- | 4 | 4 | AY.25 | 0.000024 |
S | 248 | Y248del | TAT | --- | 4 | 4 | AY.29 | 0.000063 |
S | 248 | Y248H | Tat | Cat | 4 | 4 | AY.44 | 0.000024 |
S | 248 | Y248N | Tat | Aat | 4 | 4 | B.1 | 0.000037 |
S | 248 | Y248D | Tat | Gat | 4 | 4 | B.1 | 0.000037 |
S | 248 | Y248del | TAT | --- | 4 | 4 | B.1.1 | 0.000073 |
S | 248 | Y248S | tAt | tCt | 4 | 4 | B.1.1.404 | 0.063492 |
S | 248 | Y248S | tAt | tCt | 4 | 4 | B.1.1.7 | 0.000004 |
S | 248 | Y248del | TAT | --- | 4 | 4 | B.1.177 | 0.000053 |
S | 248 | Y248H | Tat | Cat | 4 | 4 | B.1.177 | 0.000053 |
S | 248 | Y248H | Tat | Cat | 4 | 4 | B.1.177.81 | 0.000757 |
S | 248 | Y248del | TAT | --- | 4 | 4 | B.1.351 | 0.000119 |
S | 248 | Y248S | tAt | tCt | 4 | 4 | B.1.36 | 0.000584 |
S | 248 | Y248C | tAt | tGt | 4 | 4 | B.1.617.2 | 0.000015 |
S | 248 | Y248S | tAt | tCt | 3 | 3 | A.28 | 0.007937 |
S | 248 | Y248del | TAT | --- | 3 | 3 | AY.102 | 0.00008 |
S | 248 | Y248H | Tat | Cat | 3 | 3 | AY.103 | 0.000019 |
S | 248 | Y248C | tAt | tGt | 3 | 3 | AY.24 | 0.001293 |
S | 248 | Y248S | tAt | tCt | 3 | 3 | AY.25 | 0.000018 |
S | 248 | Y248del | TAT | --- | 3 | 3 | AY.4.5 | 0.000322 |
S | 248 | Y248C | tAt | tGt | 3 | 3 | B.1 | 0.000027 |
S | 248 | Y248S | tAt | tCt | 3 | 3 | B.1.1 | 0.000054 |
S | 248 | Y248N | Tat | Aat | 3 | 3 | B.1.1.189 | 0.004539 |
S | 248 | Y248H | Tat | Cat | 3 | 3 | B.1.1.519 | 0.000119 |
S | 248 | Y248Y | taT | taC | 3 | 3 | B.1.160 | 0.000094 |
S | 248 | Y248del | TAT | --- | 3 | 3 | B.1.234 | 0.000396 |
S | 248 | Y248S | tAt | tCt | 3 | 3 | B.1.351 | 0.000089 |
S | 248 | Y248Y | taT | taC | 3 | 3 | B.1.526 | 0.000071 |
S | 248 | Y248H | Tat | Cat | 3 | 3 | B.1.526 | 0.000071 |
S | 248 | Y248N | Tat | Aat | 3 | 3 | C.37 | 0.000348 |
S | 248 | Y248H | Tat | Cat | 3 | 3 | P.1.7 | 0.000958 |
S | 248 | Y248del | TAT | --- | 2 | 2 | 0.111111 | |
S | 248 | Y248del | TAT | --- | 2 | 2 | A.2.5 | 0.000998 |
S | 248 | Y248del | TAT | --- | 2 | 2 | AY.100 | 0.000092 |
S | 248 | Y248H | Tat | Cat | 2 | 2 | AY.102 | 0.000053 |
S | 248 | Y248Y | taT | taC | 2 | 2 | AY.20 | 0.000078 |
S | 248 | Y248del | TAT | --- | 2 | 2 | AY.3 | 0.00002 |
S | 248 | Y248C | tAt | tGt | 2 | 2 | AY.39.1 | 0.000079 |
S | 248 | Y248del | TAT | --- | 2 | 2 | AY.44 | 0.000012 |
S | 248 | Y248X | taT | taG | 2 | 2 | AY.44 | 0.000012 |
S | 248 | Y248H | Tat | Cat | 2 | 2 | AY.9.2 | 0.000073 |
S | 248 | Y248Y | taT | taC | 2 | 2 | B.1 | 0.000018 |
S | 248 | Y248del1 | taT | ta- | 2 | 2 | B.1 | 0.000018 |
S | 248 | Y248Y | taT | taC | 2 | 2 | B.1.1.306 | 0.000877 |
S | 248 | Y248del | TAT | --- | 2 | 2 | B.1.1.432 | 0.002532 |
S | 248 | Y248N | Tat | Aat | 2 | 2 | B.1.1.7 | 0.000002 |
S | 248 | Y248F | tAt | tTt | 2 | 2 | B.1.1.7 | 0.000002 |
S | 248 | Y248H | Tat | Cat | 2 | 2 | B.1.160 | 0.000062 |
S | 248 | Y248N | Tat | Aat | 2 | 2 | B.1.177 | 0.000026 |
S | 248 | Y248F | tAt | tTt | 2 | 2 | B.1.177 | 0.000026 |
S | 248 | Y248del | TAT | --- | 2 | 2 | B.1.2 | 0.000018 |
S | 248 | Y248F | tAt | tTt | 2 | 2 | B.1.2 | 0.000018 |
S | 248 | Y248H | Tat | Cat | 2 | 2 | B.1.241 | 0.001623 |
S | 248 | Y248del | TAT | --- | 2 | 2 | B.1.525 | 0.000226 |
S | 248 | Y248C | tAt | tGt | 2 | 2 | B.1.526 | 0.000047 |
S | 248 | Y248N | Tat | Aat | 2 | 2 | B.1.617.1 | 0.000258 |
S | 248 | Y248H | Tat | Cat | 2 | 2 | B.1.621 | 0.000177 |
S | 248 | Y248Y | taT | taC | 2 | 2 | C.37 | 0.000232 |
S | 248 | Y248N | Tat | Aat | 2 | 2 | C.37.1 | 0.005236 |
S | 248 | Y248del | TAT | --- | 2 | 2 | C.39 | 0.037736 |
S | 248 | Y248S | tAt | tCt | 1 | 1 | A | 0.000387 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | A.1 | 0.000282 |
S | 248 | Y248S | tAt | tCt | 1 | 1 | A.1 | 0.000282 |
S | 248 | Y248F | tAt | tTt | 1 | 1 | A.2 | 0.000662 |
S | 248 | Y248C | tAt | tGt | 1 | 1 | A.2.5 | 0.000499 |
S | 248 | Y248S | tAt | tCt | 1 | 1 | A.2.5 | 0.000499 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | A.5 | 0.001923 |
S | 248 | Y248Q | TaT | CaA | 1 | 1 | All | 0 |
S | 248 | Y248T | TAT | ACG | 1 | 1 | All | 0 |
S | 248 | Y248E | TaT | GaA | 1 | 1 | All | 0 |
S | 248 | Y248Y | taT | taC | 1 | 1 | AY.100 | 0.000046 |
S | 248 | Y248del | TAT | --- | 1 | 1 | AY.101 | 0.00049 |
S | 248 | Y248Y | taT | taC | 1 | 1 | AY.102 | 0.000027 |
S | 248 | Y248C | tAt | tGt | 1 | 1 | AY.102 | 0.000027 |
S | 248 | Y248Y | taT | taC | 1 | 1 | AY.103 | 0.000006 |
S | 248 | Y248D | Tat | Gat | 1 | 1 | AY.103 | 0.000006 |
S | 248 | Y248del | TAT | --- | 1 | 1 | AY.111 | 0.000183 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | AY.114 | 0.000231 |
S | 248 | Y248del | TAT | --- | 1 | 1 | AY.117 | 0.000085 |
S | 248 | Y248del | TAT | --- | 1 | 1 | AY.118 | 0.000063 |
S | 248 | Y248S | tAt | tCt | 1 | 1 | AY.119 | 0.000035 |
S | 248 | Y248T | TAT | ACG | 1 | 1 | AY.121 | 0.000135 |
S | 248 | Y248C | tAt | tGt | 1 | 1 | AY.13 | 0.000161 |
S | 248 | Y248S | tAt | tCt | 1 | 1 | AY.20 | 0.000039 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | AY.21 | 0.001898 |
S | 248 | Y248X | taT | taA | 1 | 1 | AY.23 | 0.00007 |
S | 248 | Y248C | tAt | tGt | 1 | 1 | AY.23 | 0.00007 |
S | 248 | Y248F | tAt | tTt | 1 | 1 | AY.23 | 0.00007 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | AY.25 | 0.000006 |
S | 248 | Y248C | tAt | tGt | 1 | 1 | AY.25 | 0.000006 |
S | 248 | Y248C | tAt | tGt | 1 | 1 | AY.29 | 0.000016 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | AY.3 | 0.00001 |
S | 248 | Y248N | Tat | Aat | 1 | 1 | AY.33 | 0.000067 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | AY.33 | 0.000067 |
S | 248 | Y248F | tAt | tTt | 1 | 1 | AY.33 | 0.000067 |
S | 248 | Y248F | tAt | tTt | 1 | 1 | AY.34 | 0.000097 |
S | 248 | Y248C | tAt | tGt | 1 | 1 | AY.34 | 0.000097 |
S | 248 | Y248del1 | taT | ta- | 1 | 1 | AY.4 | 0.000002 |
S | 248 | Y248del | TAT | --- | 1 | 1 | AY.4 | 0.000002 |
S | 248 | Y248N | Tat | Aat | 1 | 1 | AY.4 | 0.000002 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | AY.4.5 | 0.000107 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | AY.41 | 0.000294 |
S | 248 | Y248E | TaT | GaA | 1 | 1 | AY.42 | 0.00004 |
S | 248 | Y248Y | taT | taC | 1 | 1 | AY.43 | 0.000004 |
S | 248 | Y248S | tAt | tCt | 1 | 1 | AY.43 | 0.000004 |
S | 248 | Y248Y | taT | taC | 1 | 1 | AY.45 | 0.000122 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | AY.46.5 | 0.000198 |
S | 248 | Y248del | TAT | --- | 1 | 1 | AY.46.6 | 0.000072 |
S | 248 | Y248C | tAt | tGt | 1 | 1 | AY.47 | 0.000031 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | AY.47 | 0.000031 |
S | 248 | Y248del | TAT | --- | 1 | 1 | AY.5 | 0.000021 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | AY.5 | 0.000021 |
S | 248 | Y248S | tAt | tCt | 1 | 1 | AY.52 | 0.000814 |
S | 248 | Y248C | tAt | tGt | 1 | 1 | AY.52 | 0.000814 |
S | 248 | Y248del | TAT | --- | 1 | 1 | AY.54 | 0.000095 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | AY.54 | 0.000095 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | AY.59 | 0.00053 |
S | 248 | Y248S | tAt | tCt | 1 | 1 | AY.59 | 0.00053 |
S | 248 | Y248del | TAT | --- | 1 | 1 | AY.65 | 0.000533 |
S | 248 | Y248Y | taT | taC | 1 | 1 | AY.7.1 | 0.000113 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | AY.7.1 | 0.000113 |
S | 248 | Y248Y | taT | taC | 1 | 1 | AY.84 | 0.000437 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | AY.9 | 0.000068 |
S | 248 | Y248del | TAT | --- | 1 | 1 | AY.95 | 0.000761 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | AY.98 | 0.000079 |
S | 248 | Y248del | TAT | --- | 1 | 1 | AY.98 | 0.000079 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | AZ.2 | 0.000821 |
S | 248 | Y248F | tAt | tTt | 1 | 1 | B.1 | 0.000009 |
S | 248 | Y248N | Tat | Aat | 1 | 1 | B.1.1 | 0.000018 |
S | 248 | Y248Y | taT | taC | 1 | 1 | B.1.1 | 0.000018 |
S | 248 | Y248del | TAT | --- | 1 | 1 | B.1.1.1 | 0.000327 |
S | 248 | Y248del | TAT | --- | 1 | 1 | B.1.1.159 | 0.004673 |
S | 248 | Y248N | Tat | Aat | 1 | 1 | B.1.1.186 | 0.003436 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | B.1.1.189 | 0.001513 |
S | 248 | Y248S | tAt | tCt | 1 | 1 | B.1.1.216 | 0.00089 |
S | 248 | Y248Y | taT | taC | 1 | 1 | B.1.1.251 | 0.007937 |
S | 248 | Y248D | Tat | Gat | 1 | 1 | B.1.1.265 | 0.003155 |
S | 248 | Y248Y | taT | taC | 1 | 1 | B.1.1.277 | 0.000759 |
S | 248 | Y248del | TAT | --- | 1 | 1 | B.1.1.28 | 0.000311 |
S | 248 | Y248del | TAT | --- | 1 | 1 | B.1.1.284 | 0.000107 |
S | 248 | Y248del | TAT | --- | 1 | 1 | B.1.1.317 | 0.000412 |
S | 248 | Y248S | tAt | tCt | 1 | 1 | B.1.1.348 | 0.000796 |
S | 248 | Y248del | TAT | --- | 1 | 1 | B.1.1.348 | 0.000796 |
S | 248 | Y248del | TAT | --- | 1 | 1 | B.1.1.372 | 0.000689 |
S | 248 | Y248Y | taT | taC | 1 | 1 | B.1.1.389 | 0.006061 |
S | 248 | Y248del | TAT | --- | 1 | 1 | B.1.1.389 | 0.006061 |
S | 248 | Y248del | TAT | --- | 1 | 1 | B.1.1.528 | 0.004808 |
S | 248 | Y248Q | TaT | CaA | 1 | 1 | B.1.1.7 | 0.000001 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | B.1.111 | 0.001175 |
S | 248 | Y248S | tAt | tCt | 1 | 1 | B.1.157 | 0.002985 |
S | 248 | Y248C | tAt | tGt | 1 | 1 | B.1.177 | 0.000013 |
S | 248 | Y248S | tAt | tCt | 1 | 1 | B.1.177 | 0.000013 |
S | 248 | Y248D | Tat | Gat | 1 | 1 | B.1.177 | 0.000013 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | B.1.177.12 | 0.000152 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | B.1.177.46 | 0.000918 |
S | 248 | Y248C | tAt | tGt | 1 | 1 | B.1.177.6 | 0.000977 |
S | 248 | Y248del | TAT | --- | 1 | 1 | B.1.177.60 | 0.000218 |
S | 248 | Y248del | TAT | --- | 1 | 1 | B.1.177.69 | 0.001484 |
S | 248 | Y248del1 | taT | ta- | 1 | 1 | B.1.177.76 | 0.002494 |
S | 248 | Y248del1 | taT | ta- | 1 | 1 | B.1.2 | 0.000009 |
S | 248 | Y248N | Tat | Aat | 1 | 1 | B.1.2 | 0.000009 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | B.1.221 | 0.000071 |
S | 248 | Y248N | Tat | Aat | 1 | 1 | B.1.234 | 0.000132 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | B.1.240 | 0.000216 |
S | 248 | Y248C | tAt | tGt | 1 | 1 | B.1.243 | 0.00007 |
S | 248 | Y248del | TAT | --- | 1 | 1 | B.1.243 | 0.00007 |
S | 248 | Y248N | Tat | Aat | 1 | 1 | B.1.258 | 0.000067 |
S | 248 | Y248C | tAt | tGt | 1 | 1 | B.1.258.17 | 0.000104 |
S | 248 | Y248Y | taT | taC | 1 | 1 | B.1.311 | 0.000275 |
S | 248 | Y248D | Tat | Gat | 1 | 1 | B.1.332 | 0.003497 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | B.1.333 | 0.010526 |
S | 248 | Y248C | tAt | tGt | 1 | 1 | B.1.351 | 0.00003 |
S | 248 | Y248Y | taT | taC | 1 | 1 | B.1.351.2 | 0.000303 |
S | 248 | Y248Y | taT | taC | 1 | 1 | B.1.351.3 | 0.000876 |
S | 248 | Y248del | TAT | --- | 1 | 1 | B.1.36 | 0.000146 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | B.1.36 | 0.000146 |
S | 248 | Y248Y | taT | taC | 1 | 1 | B.1.380 | 0.006623 |
S | 248 | Y248F | tAt | tTt | 1 | 1 | B.1.427 | 0.00005 |
S | 248 | Y248Y | taT | taC | 1 | 1 | B.1.427 | 0.00005 |
S | 248 | Y248F | tAt | tTt | 1 | 1 | B.1.429 | 0.000024 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | B.1.429 | 0.000024 |
S | 248 | Y248Y | taT | taC | 1 | 1 | B.1.429 | 0.000024 |
S | 248 | Y248C | tAt | tGt | 1 | 1 | B.1.438.1 | 0.000107 |
S | 248 | Y248Y | taT | taC | 1 | 1 | B.1.438.1 | 0.000107 |
S | 248 | Y248del | TAT | --- | 1 | 1 | B.1.561 | 0.000397 |
S | 248 | Y248del | TAT | --- | 1 | 1 | B.1.575 | 0.000303 |
S | 248 | Y248Y | taT | taC | 1 | 1 | B.1.577 | 0.000687 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | B.1.596 | 0.000087 |
S | 248 | Y248Y | taT | taC | 1 | 1 | B.1.596 | 0.000087 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | B.1.597 | 0.00463 |
S | 248 | Y248del | TAT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
S | 248 | Y248del1 | tAT | tG- | 1 | 1 | B.1.617.2 | 0.000004 |
S | 248 | Y248del | TAT | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 248 | Y248Y | taT | taC | 1 | 1 | B.1.636 | 0.006711 |
S | 248 | Y248S | tAt | tCt | 1 | 1 | B.1.637 | 0.000073 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | B.1.638 | 0.052632 |
S | 248 | Y248X | taT | taG | 1 | 1 | B.6 | 0.00091 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | C.30 | 0.001727 |
S | 248 | Y248C | tAt | tGt | 1 | 1 | C.37 | 0.000116 |
S | 248 | Y248Y | taT | taC | 1 | 1 | D.2 | 0.000075 |
S | 248 | Y248C | tAt | tGt | 1 | 1 | D.2 | 0.000075 |
S | 248 | Y248del | TAT | --- | 1 | 1 | L.1 | 0.001905 |
S | 248 | Y248Y | taT | taC | 1 | 1 | P.1 | 0.000016 |
S | 248 | Y248H | Tat | Cat | 1 | 1 | P.1 | 0.000016 |
S | 248 | Y248N | Tat | Aat | 1 | 1 | P.1 | 0.000016 |
S | 248 | Y248del | TAT | --- | 1 | 1 | P.1.1 | 0.000318 |
S | 248 | Y248del | TAT | --- | 1 | 1 | P.1.12 | 0.000484 |
S | 248 | Y248C | tAt | tGt | 1 | 1 | Q.1 | 0.000126 |
S | 248 | Y248del | TAT | --- | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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