CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 248

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S248Y248deldelTAT---79207920122304-22306
S248Y248HnonsynTatCat302530240.99966922304-22306
S248Y248HnonsynTaTCaC302510.00033057922304-22306
S248Y248YsyntaTtaC306306122304-22306
S248Y248SnonsyntAttCt163163122304-22306
S248Y248CnonsyntAttGt9191122304-22306
S248Y248NnonsynTatAat4848122304-22306
S248Y248FnonsyntAttTt2121122304-22306
S248Y248DnonsynTatGat88122304-22306
S248Y248del1deltaTta-650.83333322304-22306
S248Y248del1deltATtG-610.16666722304-22306
S248Y248XnonsyntaTtaG430.7522304-22306
S248Y248XnonsyntaTtaA410.2522304-22306
S248Y248TnonsynTATACG11122304-22306
S248Y248EnonsynTaTGaA11122304-22306
S248Y248QnonsynTaTCaA11122304-22306

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S248Y248delTAT---79207920All0.001515
S248Y248delTAT---74027402C.370.859099
S248Y248HTatCat30243025All0.000578
S248Y248HTaTCaC13025All0
S248Y248HTatCat26272627AY.40.004089
S248Y248YtaTtaC306306All0.000059
S248Y248delTAT---267267C.37.10.698953
S248Y248StAttCt163163All0.000031
S248Y248HTatCat101101B.1.617.20.00038
S248Y248YtaTtaC9494B.1.1.70.000084
S248Y248CtAttGt9191All0.000017
S248Y248HTatCat7879B.1.1.70.00007
S248Y248HTaTCaC179B.1.1.70.000001
S248Y248delTAT---6363B.1.243.20.913043
S248Y248StAttCt6060AY.440.000365
S248Y248NTatAat4848All0.000009
S248Y248CtAttGt4141AY.40.000064
S248Y248HTatCat3333B.1.10.000599
S248Y248delTAT---2828B.1.1.70.000025
S248Y248YtaTtaC2727AY.670.012535
S248Y248YtaTtaC2424AY.40.000037
S248Y248HTatCat2323AY.1080.025358
S248Y248FtAttTt2121All0.000004
S248Y248StAttCt2020B.1.4290.000471
S248Y248delTAT---1919P.1.150.004414
S248Y248HTatCat1818AY.430.00008
S248Y248HTatCat1717B.10.000156
S248Y248YtaTtaC1616B.1.1.4640.023564
S248Y248StAttCt1616B.1.1.5190.000635
S248Y248YtaTtaC1515AY.250.00009
S248Y248delTAT---1414B.1.351.30.01227
S248Y248YtaTtaC1313AY.440.000079
S248Y248delTAT---1313B.10.000119
S248Y248YtaTtaC1313B.1.20.000114
S248Y248YtaTtaC1212AY.98.10.000581
S248Y248YtaTtaC1212B.1.2670.222222
S248Y248HTatCat1010AY.200.000389
S248Y248HTatCat1010B.1.466.20.003912
S248Y248YtaTtaC1010B.1.617.20.000038
S248Y248NTatAat1010B.1.6390.217391
S248Y248StAttCt1010C.370.001161
S248Y248HTatCat99AY.420.000362
S248Y248StAttCt99B.10.000082
S248Y248CtAttGt99B.1.1.70.000008
S248Y248HTatCat99B.1.20.000079
S248Y248YtaTtaC99B.1.5250.001018
S248Y248DTatGat88All0.000002
S248Y248FtAttTt88AY.40.000012
S248Y248YtaTtaC77AY.260.000198
S248Y248HTatCat77AY.390.000173
S248Y248delTAT---77AY.430.000031
S248Y248delTAT---77B.1.4290.000165
S248Y248NTatAat77B.1.5260.000165
S248Y248del1taTta-56All0.000001
S248Y248del1tATtG-16All0
S248Y248StAttCt66AY.40.000009
S248Y248HTatCat66AY.760.028986
S248Y248YtaTtaC66AY.910.004383
S248Y248YtaTtaC66B.1.4200.0625
S248Y248delTAT---66P.10.000095
S248Y248delTAT---55A.300.714286
S248Y248HTatCat55AY.610.000524
S248Y248HTatCat55B.1.1.250.002843
S248Y248CtAttGt55B.1.20.000044
S248Y248StAttCt55B.1.2580.000333
S248Y248YtaTtaC55B.1.3510.000149
S248Y248NTatAat55B.1.3510.000149
S248Y248delTAT---55B.1.617.20.000019
S248Y248delTAT---55B.1.6210.000443
S248Y248XtaTtaG34All0.000001
S248Y248XtaTtaA14All0
S248Y248CtAttGt44AY.1030.000025
S248Y248delTAT---44AY.250.000024
S248Y248delTAT---44AY.290.000063
S248Y248HTatCat44AY.440.000024
S248Y248NTatAat44B.10.000037
S248Y248DTatGat44B.10.000037
S248Y248delTAT---44B.1.10.000073
S248Y248StAttCt44B.1.1.4040.063492
S248Y248StAttCt44B.1.1.70.000004
S248Y248delTAT---44B.1.1770.000053
S248Y248HTatCat44B.1.1770.000053
S248Y248HTatCat44B.1.177.810.000757
S248Y248delTAT---44B.1.3510.000119
S248Y248StAttCt44B.1.360.000584
S248Y248CtAttGt44B.1.617.20.000015
S248Y248StAttCt33A.280.007937
S248Y248delTAT---33AY.1020.00008
S248Y248HTatCat33AY.1030.000019
S248Y248CtAttGt33AY.240.001293
S248Y248StAttCt33AY.250.000018
S248Y248delTAT---33AY.4.50.000322
S248Y248CtAttGt33B.10.000027
S248Y248StAttCt33B.1.10.000054
S248Y248NTatAat33B.1.1.1890.004539
S248Y248HTatCat33B.1.1.5190.000119
S248Y248YtaTtaC33B.1.1600.000094
S248Y248delTAT---33B.1.2340.000396
S248Y248StAttCt33B.1.3510.000089
S248Y248YtaTtaC33B.1.5260.000071
S248Y248HTatCat33B.1.5260.000071
S248Y248NTatAat33C.370.000348
S248Y248HTatCat33P.1.70.000958
S248Y248delTAT---220.111111
S248Y248delTAT---22A.2.50.000998
S248Y248delTAT---22AY.1000.000092
S248Y248HTatCat22AY.1020.000053
S248Y248YtaTtaC22AY.200.000078
S248Y248delTAT---22AY.30.00002
S248Y248CtAttGt22AY.39.10.000079
S248Y248delTAT---22AY.440.000012
S248Y248XtaTtaG22AY.440.000012
S248Y248HTatCat22AY.9.20.000073
S248Y248YtaTtaC22B.10.000018
S248Y248del1taTta-22B.10.000018
S248Y248YtaTtaC22B.1.1.3060.000877
S248Y248delTAT---22B.1.1.4320.002532
S248Y248NTatAat22B.1.1.70.000002
S248Y248FtAttTt22B.1.1.70.000002
S248Y248HTatCat22B.1.1600.000062
S248Y248NTatAat22B.1.1770.000026
S248Y248FtAttTt22B.1.1770.000026
S248Y248delTAT---22B.1.20.000018
S248Y248FtAttTt22B.1.20.000018
S248Y248HTatCat22B.1.2410.001623
S248Y248delTAT---22B.1.5250.000226
S248Y248CtAttGt22B.1.5260.000047
S248Y248NTatAat22B.1.617.10.000258
S248Y248HTatCat22B.1.6210.000177
S248Y248YtaTtaC22C.370.000232
S248Y248NTatAat22C.37.10.005236
S248Y248delTAT---22C.390.037736
S248Y248StAttCt11A0.000387
S248Y248HTatCat11A.10.000282
S248Y248StAttCt11A.10.000282
S248Y248FtAttTt11A.20.000662
S248Y248CtAttGt11A.2.50.000499
S248Y248StAttCt11A.2.50.000499
S248Y248HTatCat11A.50.001923
S248Y248QTaTCaA11All0
S248Y248TTATACG11All0
S248Y248ETaTGaA11All0
S248Y248YtaTtaC11AY.1000.000046
S248Y248delTAT---11AY.1010.00049
S248Y248YtaTtaC11AY.1020.000027
S248Y248CtAttGt11AY.1020.000027
S248Y248YtaTtaC11AY.1030.000006
S248Y248DTatGat11AY.1030.000006
S248Y248delTAT---11AY.1110.000183
S248Y248HTatCat11AY.1140.000231
S248Y248delTAT---11AY.1170.000085
S248Y248delTAT---11AY.1180.000063
S248Y248StAttCt11AY.1190.000035
S248Y248TTATACG11AY.1210.000135
S248Y248CtAttGt11AY.130.000161
S248Y248StAttCt11AY.200.000039
S248Y248HTatCat11AY.210.001898
S248Y248XtaTtaA11AY.230.00007
S248Y248CtAttGt11AY.230.00007
S248Y248FtAttTt11AY.230.00007
S248Y248HTatCat11AY.250.000006
S248Y248CtAttGt11AY.250.000006
S248Y248CtAttGt11AY.290.000016
S248Y248HTatCat11AY.30.00001
S248Y248NTatAat11AY.330.000067
S248Y248HTatCat11AY.330.000067
S248Y248FtAttTt11AY.330.000067
S248Y248FtAttTt11AY.340.000097
S248Y248CtAttGt11AY.340.000097
S248Y248del1taTta-11AY.40.000002
S248Y248delTAT---11AY.40.000002
S248Y248NTatAat11AY.40.000002
S248Y248HTatCat11AY.4.50.000107
S248Y248HTatCat11AY.410.000294
S248Y248ETaTGaA11AY.420.00004
S248Y248YtaTtaC11AY.430.000004
S248Y248StAttCt11AY.430.000004
S248Y248YtaTtaC11AY.450.000122
S248Y248HTatCat11AY.46.50.000198
S248Y248delTAT---11AY.46.60.000072
S248Y248CtAttGt11AY.470.000031
S248Y248HTatCat11AY.470.000031
S248Y248delTAT---11AY.50.000021
S248Y248HTatCat11AY.50.000021
S248Y248StAttCt11AY.520.000814
S248Y248CtAttGt11AY.520.000814
S248Y248delTAT---11AY.540.000095
S248Y248HTatCat11AY.540.000095
S248Y248HTatCat11AY.590.00053
S248Y248StAttCt11AY.590.00053
S248Y248delTAT---11AY.650.000533
S248Y248YtaTtaC11AY.7.10.000113
S248Y248HTatCat11AY.7.10.000113
S248Y248YtaTtaC11AY.840.000437
S248Y248HTatCat11AY.90.000068
S248Y248delTAT---11AY.950.000761
S248Y248HTatCat11AY.980.000079
S248Y248delTAT---11AY.980.000079
S248Y248HTatCat11AZ.20.000821
S248Y248FtAttTt11B.10.000009
S248Y248NTatAat11B.1.10.000018
S248Y248YtaTtaC11B.1.10.000018
S248Y248delTAT---11B.1.1.10.000327
S248Y248delTAT---11B.1.1.1590.004673
S248Y248NTatAat11B.1.1.1860.003436
S248Y248HTatCat11B.1.1.1890.001513
S248Y248StAttCt11B.1.1.2160.00089
S248Y248YtaTtaC11B.1.1.2510.007937
S248Y248DTatGat11B.1.1.2650.003155
S248Y248YtaTtaC11B.1.1.2770.000759
S248Y248delTAT---11B.1.1.280.000311
S248Y248delTAT---11B.1.1.2840.000107
S248Y248delTAT---11B.1.1.3170.000412
S248Y248StAttCt11B.1.1.3480.000796
S248Y248delTAT---11B.1.1.3480.000796
S248Y248delTAT---11B.1.1.3720.000689
S248Y248YtaTtaC11B.1.1.3890.006061
S248Y248delTAT---11B.1.1.3890.006061
S248Y248delTAT---11B.1.1.5280.004808
S248Y248QTaTCaA11B.1.1.70.000001
S248Y248HTatCat11B.1.1110.001175
S248Y248StAttCt11B.1.1570.002985
S248Y248CtAttGt11B.1.1770.000013
S248Y248StAttCt11B.1.1770.000013
S248Y248DTatGat11B.1.1770.000013
S248Y248HTatCat11B.1.177.120.000152
S248Y248HTatCat11B.1.177.460.000918
S248Y248CtAttGt11B.1.177.60.000977
S248Y248delTAT---11B.1.177.600.000218
S248Y248delTAT---11B.1.177.690.001484
S248Y248del1taTta-11B.1.177.760.002494
S248Y248del1taTta-11B.1.20.000009
S248Y248NTatAat11B.1.20.000009
S248Y248HTatCat11B.1.2210.000071
S248Y248NTatAat11B.1.2340.000132
S248Y248HTatCat11B.1.2400.000216
S248Y248CtAttGt11B.1.2430.00007
S248Y248delTAT---11B.1.2430.00007
S248Y248NTatAat11B.1.2580.000067
S248Y248CtAttGt11B.1.258.170.000104
S248Y248YtaTtaC11B.1.3110.000275
S248Y248DTatGat11B.1.3320.003497
S248Y248HTatCat11B.1.3330.010526
S248Y248CtAttGt11B.1.3510.00003
S248Y248YtaTtaC11B.1.351.20.000303
S248Y248YtaTtaC11B.1.351.30.000876
S248Y248delTAT---11B.1.360.000146
S248Y248HTatCat11B.1.360.000146
S248Y248YtaTtaC11B.1.3800.006623
S248Y248FtAttTt11B.1.4270.00005
S248Y248YtaTtaC11B.1.4270.00005
S248Y248FtAttTt11B.1.4290.000024
S248Y248HTatCat11B.1.4290.000024
S248Y248YtaTtaC11B.1.4290.000024
S248Y248CtAttGt11B.1.438.10.000107
S248Y248YtaTtaC11B.1.438.10.000107
S248Y248delTAT---11B.1.5610.000397
S248Y248delTAT---11B.1.5750.000303
S248Y248YtaTtaC11B.1.5770.000687
S248Y248HTatCat11B.1.5960.000087
S248Y248YtaTtaC11B.1.5960.000087
S248Y248HTatCat11B.1.5970.00463
S248Y248delTAT---11B.1.617.10.000129
S248Y248del1tATtG-11B.1.617.20.000004
S248Y248delTAT---11B.1.6200.000946
S248Y248YtaTtaC11B.1.6360.006711
S248Y248StAttCt11B.1.6370.000073
S248Y248HTatCat11B.1.6380.052632
S248Y248XtaTtaG11B.60.00091
S248Y248HTatCat11C.300.001727
S248Y248CtAttGt11C.370.000116
S248Y248YtaTtaC11D.20.000075
S248Y248CtAttGt11D.20.000075
S248Y248delTAT---11L.10.001905
S248Y248YtaTtaC11P.10.000016
S248Y248HTatCat11P.10.000016
S248Y248NTatAat11P.10.000016
S248Y248delTAT---11P.1.10.000318
S248Y248delTAT---11P.1.120.000484
S248Y248CtAttGt11Q.10.000126
S248Y248delTAT---11Q.80.000165