CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 246

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S246R246deldelAGA---81798179122298-22300
S246R246GnonsynAgaGga8648630.99884322298-22300
S246R246GnonsynAgAGgT86410.0011574122298-22300
S246R246InonsynaGaaTa8038020.99875522298-22300
S246R246InonsynaGAaTT80310.0012453322298-22300
S246R246TnonsynaGaaCa4504470.99333322298-22300
S246R246TnonsynaGAaCT45030.0066666722298-22300
S246R246KnonsynaGaaAa320320122298-22300
S246R246RsynagAagG1441330.92361122298-22300
S246R246RsynAgaCga144110.076388922298-22300
S246R246SnonsynagAagC119710.59663922298-22300
S246R246SnonsynagAagT119480.40336122298-22300
S246R246del2delaGAa--30280.93333322298-22300
S246R246del2delAGa--a3020.066666722298-22300
S246R246EnonsynAGaGAa29280.96551722298-22300
S246R246EnonsynAGAGAG2910.034482822298-22300
S246R246NnonsynaGAaAT1515122298-22300
S246R246del1delAga-ga1580.53333322298-22300
S246R246del1delagAag-1530.222298-22300
S246R246del1delaGAa-N1520.13333322298-22300
S246R246del1delaGAa-T1510.066666722298-22300
S246R246del1delaGaa-a1510.066666722298-22300
S246R246XnonsynAgaTga640.66666722298-22300
S246R246XnonsynAGaTAa610.16666722298-22300
S246R246XnonsynAGATAG610.16666722298-22300
S246R246CnonsynAgATgC11122298-22300
S246R246LnonsynAGaTTa11122298-22300
S246R246QnonsynAGaCAa11122298-22300

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S246R246delAGA---81798179All0.001564
S246R246delAGA---73947394C.370.858171
S246R246GAgaGga863864All0.000165
S246R246GAgAGgT1864All0
S246R246IaGaaTa802803All0.000153
S246R246IaGAaTT1803All0
S246R246GAgaGga678678P.1.120.32817
S246R246TaGaaCa447450All0.000085
S246R246TaGAaCT3450All0.000001
S246R246KaGaaAa320320All0.000061
S246R246IaGaaTa267267B.1.3510.007937
S246R246delAGA---267267C.37.10.698953
S246R246IaGaaTa190190B.1.1.70.00017
S246R246RagAagG133144All0.000025
S246R246RAgaCga11144All0.000002
S246R246TaGaaCa138141B.1.1.70.000124
S246R246TaGAaCT3141B.1.1.70.000003
S246R246delAGA---136136B.1.1.70.000122
S246R246TaGaaCa128128B.1.415.10.969697
S246R246SagAagC71119All0.000014
S246R246SagAagT48119All0.000009
S246R246KaGaaAa8282AY.30.000816
S246R246RagAagG7979B.1.1.70.000071
S246R246KaGaaAa7979B.1.1.70.000071
S246R246KaGaaAa7474R.10.006661
S246R246delAGA---6363B.1.243.20.913043
S246R246IaGaaTa6161AY.40.000095
S246R246GAgaGga5454B.1.3510.001605
S246R246SagAagC3343B.1.1.70.00003
S246R246SagAagT1043B.1.1.70.000009
S246R246IaGaaTa3232B.1.617.20.00012
S246R246delAGA---3232C.400.888889
S246R246IaGaaTa3131AY.420.001247
S246R246del2aGAa--2830All0.000005
S246R246del2AGa--a230All0
S246R246IaGaaTa3030AY.430.000133
S246R246EAGaGAa2829All0.000005
S246R246EAGAGAG129All0
S246R246GAgaGga2929AY.30.000288
S246R246delAGA---2929B.10.000266
S246R246del2aGAa--2425C.370.002786
S246R246del2AGa--a125C.370.000116
S246R246EAGaGAa2020B.1.1.70.000018
S246R246GAgaGga2020B.1.1.70.000018
S246R246delAGA---2020P.1.150.004647
S246R246GAgaGga1919AY.4.20.000412
S246R246delAGA---1717B.1.1770.000224
S246R246RagAagG1616AY.9.10.00134
S246R246NaGAaAT1515All0.000003
S246R246del1Aga-ga815All0.000002
S246R246del1agAag-315All0.000001
S246R246del1aGAa-N215All0
S246R246del1aGAa-T115All0
S246R246del1aGaa-a115All0
S246R246NaGAaAT1515C.370.001741
S246R246delAGA---1414B.1.351.30.01227
S246R246GAgaGga1414B.1.617.20.000053
S246R246IaGaaTa1313AY.440.000079
S246R246TaGaaCa1212AY.1030.000075
S246R246SagAagC1011AY.1030.000062
S246R246SagAagT111AY.1030.000006
S246R246TaGaaCa1111AY.40.000017
S246R246delAGA---1111B.1.10.0002
S246R246delAGA---1111B.1.20.000097
S246R246IaGaaTa1010AY.50.000206
S246R246RagAagG1010B.1.1.4340.003486
S246R246delAGA---1010B.1.6390.217391
S246R246TaGaaCa1010P.10.000158
S246R246SagAagT79AY.40.000011
S246R246SagAagC29AY.40.000003
S246R246delAGA---99B.1.4290.000212
S246R246TaGaaCa99B.1.617.20.000034
S246R246delAGA---99B.1.6370.000658
S246R246GAgaGga88AY.1030.00005
S246R246TaGaaCa88AY.430.000035
S246R246delAGA---88AY.430.000035
S246R246KaGaaAa88AY.430.000035
S246R246KaGaaAa88AY.440.000049
S246R246IaGaaTa88B.1.20.00007
S246R246delAGA---88B.1.3510.000238
S246R246delAGA---88B.1.617.20.00003
S246R246SagAagT48B.1.617.20.000015
S246R246SagAagC48B.1.617.20.000015
S246R246IaGaaTa77AY.1030.000043
S246R246TaGaaCa77AY.120.2.10.003488
S246R246KaGaaAa77AY.250.000042
S246R246IaGaaTa77AY.3.10.000597
S246R246delAGA---77P.10.00011
S246R246XAgaTga46All0.000001
S246R246XAGaTAa16All0
S246R246XAGATAG16All0
S246R246IaGaaTa66AY.250.000036
S246R246SagAagC56AY.250.00003
S246R246SagAagT16AY.250.000006
S246R246GAgaGga66B.10.000055
S246R246IaGaaTa66B.1.10.000109
S246R246KaGaaAa66B.1.351.10.230769
S246R246KaGaaAa66B.1.617.20.000023
S246R246delAGA---55A.300.714286
S246R246RagAagG55AY.250.00003
S246R246del1agAag-35AY.290.000047
S246R246del1Aga-ga25AY.290.000032
S246R246SagAagT55AY.30.00005
S246R246delAGA---55AY.40.000008
S246R246KaGaaAa55AY.40.000008
S246R246GAgaGga55AY.40.000008
S246R246TaGaaCa55AY.4.20.000108
S246R246IaGaaTa55B.10.000046
S246R246KaGaaAa55B.1.1770.000066
S246R246TaGaaCa55B.1.1770.000066
S246R246TaGaaCa55B.1.20.000044
S246R246TaGaaCa55D.20.000375
S246R246delAGA---55P.50.068493
S246R246delAGA---55Q.10.000632
S246R246IaGaaTa44AY.1200.000149
S246R246delAGA---44AY.250.000024
S246R246GAgaGga44AY.250.000024
S246R246IaGaaTa44AY.260.000113
S246R246RagAagG44AY.30.00004
S246R246IaGaaTa44AY.340.000388
S246R246IaGaaTa44AY.390.000099
S246R246IaGaaTa44AY.4.20.000087
S246R246TaGaaCa44B.10.000037
S246R246RagAagG34B.10.000027
S246R246RAgaCga14B.10.000009
S246R246IaGaaTa44B.1.1.2140.000222
S246R246SagAagC34B.1.20.000026
S246R246SagAagT14B.1.20.000009
S246R246delAGA---44B.1.360.000584
S246R246TaGaaCa44B.1.4290.000094
S246R246delAGA---44B.1.5260.000094
S246R246TaGaaCa44B.1.617.10.000516
S246R246delAGA---44B.1.6210.000354
S246R246TaGaaCa44Q.80.00066
S246R246delAGA---44R.10.00036
S246R246delAGA---33AY.1020.00008
S246R246IaGaaTa33AY.1020.00008
S246R246TaGaaCa33AY.1020.00008
S246R246IaGaaTa33AY.290.000047
S246R246IaGaaTa33AY.30.00003
S246R246TaGaaCa33AY.390.000074
S246R246KaGaaAa33AY.390.000074
S246R246RagAagG33AY.40.000005
S246R246delAGA---33AY.4.50.000322
S246R246delAGA---33AY.440.000018
S246R246IaGaaTa33AY.60.000123
S246R246TaGaaCa33B.1.10.000054
S246R246KaGaaAa33B.1.10.000054
S246R246delAGA---33B.1.1.1890.004539
S246R246TaGaaCa33B.1.1.280.000934
S246R246delAGA---33B.1.1.2940.003797
S246R246IaGaaTa33B.1.1770.00004
S246R246IaGaaTa33B.1.214.20.001799
S246R246delAGA---33B.1.2340.000396
S246R246TaGaaCa33B.1.2340.000396
S246R246TaGaaCa33B.1.36.360.001806
S246R246IaGaaTa33B.1.4290.000071
S246R246IaGaaTa33B.1.5240.004219
S246R246TaGaaCa33B.1.5260.000071
S246R246delAGA---33B.1.617.10.000387
S246R246IaGaaTa33B.1.6320.020134
S246R246EAGaGAa33B.1.6370.000219
S246R246TaGaaCa33C.110.031915
S246R246GAgaGga33P.10.000047
S246R246delAGA---220.111111
S246R246GAgaGga22A0.000774
S246R246delAGA---22A.2.50.000998
S246R246delAGA---22AY.1000.000092
S246R246delAGA---22AY.1010.000981
S246R246KaGaaAa22AY.1020.000053
S246R246RAgaCga22AY.1030.000012
S246R246IaGaaTa12AY.16.10.00047
S246R246IaGAaTT12AY.16.10.00047
S246R246TaGaaCa22AY.250.000012
S246R246KaGaaAa22AY.260.000057
S246R246IaGaaTa22AY.270.000129
S246R246TaGaaCa22AY.30.00002
S246R246delAGA---22AY.30.00002
S246R246TaGaaCa22AY.320.001065
S246R246RAgaCga22AY.430.000009
S246R246SagAagC22AY.430.000009
S246R246TaGaaCa22AY.440.000012
S246R246IaGaaTa22AY.46.40.000329
S246R246IaGaaTa22AY.46.60.000144
S246R246TaGaaCa22AY.470.000062
S246R246SagAagC22AY.60.000082
S246R246TaGaaCa22AY.610.00021
S246R246IaGaaTa22AY.610.00021
S246R246TaGaaCa22AY.90.000135
S246R246IaGaaTa22AY.9.10.000167
S246R246delAGA---22AY.950.001522
S246R246KaGaaAa22B.10.000018
S246R246SagAagT22B.10.000018
S246R246delAGA---22B.1.1.280.000622
S246R246TaGaaCa22B.1.1.3370.007194
S246R246delAGA---22B.1.1.4320.002532
S246R246delAGA---22B.1.1.4640.002946
S246R246TaGaaCa22B.1.1600.000062
S246R246GAgaGga22B.1.1770.000026
S246R246KaGaaAa22B.1.177.200.003035
S246R246IaGaaTa22B.1.177.440.001038
S246R246TaGaaCa22B.1.177.50.002484
S246R246SagAagT22B.1.177.830.002963
S246R246KaGaaAa22B.1.20.000018
S246R246XAgaTga22B.1.20.000018
S246R246GAgaGga22B.1.3320.006993
S246R246KaGaaAa22B.1.3510.000059
S246R246TaGaaCa22B.1.360.000292
S246R246SagAagC22B.1.36.290.001035
S246R246TaGaaCa22B.1.4090.001563
S246R246delAGA---22B.1.4160.002538
S246R246IaGaaTa22B.1.4270.000101
S246R246RagAagG22B.1.4290.000047
S246R246SagAagT12B.1.4290.000024
S246R246SagAagC12B.1.4290.000024
S246R246IaGaaTa22B.1.4800.004975
S246R246delAGA---22B.1.5250.000226
S246R246TaGaaCa22B.1.5250.000226
S246R246IaGaaTa22B.1.5260.000047
S246R246IaGaaTa22B.1.6370.000146
S246R246TaGaaCa22B.1.6370.000146
S246R246SagAagT22C.370.000232
S246R246del1aGAa-N22C.370.000232
S246R246KaGaaAa22C.370.000232
S246R246del2aGAa--22C.37.10.005236
S246R246delAGA---22C.390.037736
S246R246del2aGAa--22C.400.055556
S246R246IaGaaTa22L.30.007092
S246R246SagAagT22P.10.000032
S246R246IaGaaTa22Q.30.00029
S246R246delAGA---22Q.40.00091
S246R246TaGaaCa11A0.000387
S246R246RagAagG11A.2.50.000499
S246R246TaGaaCa11A.2.5.20.001572
S246R246KaGaaAa11AE.50.018519
S246R246CAgATgC11All0
S246R246LAGaTTa11All0
S246R246QAGaCAa11All0
S246R246TaGaaCa11AU.10.001266
S246R246RagAagG11AY.10.000396
S246R246IaGaaTa11AY.1000.000046
S246R246SagAagT11AY.1020.000027
S246R246LAGaTTa11AY.1020.000027
S246R246XAGATAG11AY.1030.000006
S246R246delAGA---11AY.1030.000006
S246R246del1Aga-ga11AY.1030.000006
S246R246IaGaaTa11AY.1090.00074
S246R246IaGaaTa11AY.1100.000113
S246R246delAGA---11AY.1110.000183
S246R246RagAagG11AY.1140.000231
S246R246IaGaaTa11AY.1140.000231
S246R246delAGA---11AY.1180.000063
S246R246TaGaaCa11AY.1180.000063
S246R246GAgAGgT11AY.1210.000135
S246R246KaGaaAa11AY.130.000161
S246R246SagAagT11AY.16.10.00047
S246R246RAgaCga11AY.200.000039
S246R246SagAagT11AY.230.00007
S246R246SagAagC11AY.23.10.000417
S246R246IaGaaTa11AY.23.10.000417
S246R246KaGaaAa11AY.23.10.000417
S246R246del1Aga-ga11AY.250.000006
S246R246del1Aga-ga11AY.30.00001
S246R246RagAagG11AY.330.000067
S246R246IaGaaTa11AY.34.10.00051
S246R246KaGaaAa11AY.350.000233
S246R246TaGaaCa11AY.360.000148
S246R246IaGaaTa11AY.360.000148
S246R246GAgaGga11AY.370.000316
S246R246SagAagT11AY.4.20.000022
S246R246KaGaaAa11AY.420.00004
S246R246del1Aga-ga11AY.430.000004
S246R246GAgaGga11AY.430.000004
S246R246QAGaCAa11AY.440.000006
S246R246SagAagT11AY.440.000006
S246R246GAgaGga11AY.440.000006
S246R246XAGaTAa11AY.440.000006
S246R246KaGaaAa11AY.460.000104
S246R246IaGaaTa11AY.46.50.000198
S246R246delAGA---11AY.46.60.000072
S246R246IaGaaTa11AY.470.000031
S246R246SagAagC11AY.50.000021
S246R246delAGA---11AY.50.000021
S246R246GAgaGga11AY.5.30.000337
S246R246RagAagG11AY.5.30.000337
S246R246EAGAGAG11AY.520.000814
S246R246IaGaaTa11AY.530.000288
S246R246TaGaaCa11AY.530.000288
S246R246TaGaaCa11AY.540.000095
S246R246SagAagT11AY.550.000917
S246R246TaGaaCa11AY.600.000938
S246R246delAGA---11AY.650.000533
S246R246TaGaaCa11AY.7.10.000113
S246R246IaGaaTa11AY.7.10.000113
S246R246TaGaaCa11AY.720.001361
S246R246delAGA---11AY.750.000056
S246R246IaGaaTa11AY.750.000056
S246R246EAGaGAa11AY.750.000056
S246R246IaGaaTa11AY.75.10.00018
S246R246TaGaaCa11AY.9.10.000084
S246R246RagAagG11AY.9.20.000037
S246R246SagAagT11AY.9.20.000037
S246R246KaGaaAa11AY.9.20.000037
S246R246IaGaaTa11AY.950.000761
S246R246IaGaaTa11AY.980.000079
S246R246delAGA---11AY.980.000079
S246R246SagAagC11AY.980.000079
S246R246GAgaGga11AY.98.10.000048
S246R246IaGaaTa11AZ.10.000867
S246R246IaGaaTa11AZ.50.003509
S246R246CAgATgC11B0.000128
S246R246del2AGa--a11B.10.000009
S246R246EAGaGAa11B.10.000009
S246R246del1Aga-ga11B.10.000009
S246R246RAgaCga11B.1.10.000018
S246R246del1aGAa-T11B.1.10.000018
S246R246EAGaGAa11B.1.10.000018
S246R246delAGA---11B.1.1.10.000327
S246R246KaGaaAa11B.1.1.100.001115
S246R246TaGaaCa11B.1.1.1530.001095
S246R246delAGA---11B.1.1.1590.004673
S246R246TaGaaCa11B.1.1.1690.018182
S246R246RagAagG11B.1.1.1760.000439
S246R246GAgaGga11B.1.1.2070.001182
S246R246KaGaaAa11B.1.1.2080.012195
S246R246SagAagC11B.1.1.2140.000055
S246R246IaGaaTa11B.1.1.2220.000204
S246R246TaGaaCa11B.1.1.250.000569
S246R246TaGaaCa11B.1.1.2650.003155
S246R246delAGA---11B.1.1.2840.000107
S246R246TaGaaCa11B.1.1.2840.000107
S246R246delAGA---11B.1.1.2980.000862
S246R246TaGaaCa11B.1.1.3040.002809
S246R246delAGA---11B.1.1.3170.000412
S246R246IaGaaTa11B.1.1.3180.000302
S246R246delAGA---11B.1.1.3180.000302
S246R246TaGaaCa11B.1.1.3180.000302
S246R246IaGaaTa11B.1.1.3240.052632
S246R246GAgaGga11B.1.1.330.000421
S246R246del1Aga-ga11B.1.1.3310.011628
S246R246IaGaaTa11B.1.1.3340.016393
S246R246KaGaaAa11B.1.1.3480.000796
S246R246delAGA---11B.1.1.3480.000796
S246R246delAGA---11B.1.1.3680.003086
S246R246SagAagT11B.1.1.370.000193
S246R246delAGA---11B.1.1.3720.000689
S246R246delAGA---11B.1.1.3890.006061
S246R246IaGaaTa11B.1.1.390.00051
S246R246IaGaaTa11B.1.1.4160.000905
S246R246GAgaGga11B.1.1.4200.001006
S246R246TaGaaCa11B.1.1.4340.000349
S246R246delAGA---11B.1.1.4340.000349
S246R246GAgaGga11B.1.1.4870.005587
S246R246delAGA---11B.1.1.5280.004808
S246R246delAGA---11B.1.1.540.003021
S246R246KaGaaAa11B.1.1.80.003584
S246R246SagAagC11B.1.1570.002985
S246R246KaGaaAa11B.1.1600.000031
S246R246IaGaaTa11B.1.1600.000031
S246R246GAgaGga11B.1.160.290.004219
S246R246RagAagG11B.1.1770.000013
S246R246SagAagC11B.1.1770.000013
S246R246TaGaaCa11B.1.177.150.000631
S246R246GAgaGga11B.1.177.170.000821
S246R246IaGaaTa11B.1.177.180.00116
S246R246IaGaaTa11B.1.177.190.001431
S246R246XAgaTga11B.1.177.230.003236
S246R246TaGaaCa11B.1.177.350.000691
S246R246delAGA---11B.1.177.600.000218
S246R246TaGaaCa11B.1.177.650.000665
S246R246delAGA---11B.1.177.690.001484
S246R246XAgaTga11B.1.177.70.000165
S246R246IaGaaTa11B.1.1890.004292
S246R246IaGaaTa11B.1.1990.004132
S246R246del1aGaa-a11B.1.20.000009
S246R246GAgaGga11B.1.20.000009
S246R246EAGaGAa11B.1.20.000009
S246R246IaGaaTa11B.1.2100.002132
S246R246TaGaaCa11B.1.2180.005155
S246R246delAGA---11B.1.2210.000071
S246R246TaGaaCa11B.1.2210.000071
S246R246IaGaaTa11B.1.2210.000071
S246R246TaGaaCa11B.1.2320.000537
S246R246KaGaaAa11B.1.2350.002519
S246R246delAGA---11B.1.2370.004975
S246R246TaGaaCa11B.1.2430.00007
S246R246delAGA---11B.1.2430.00007
S246R246KaGaaAa11B.1.2430.00007
S246R246delAGA---11B.1.2580.000067
S246R246IaGaaTa11B.1.2580.000067
S246R246IaGaaTa11B.1.258.110.000396
S246R246IaGaaTa11B.1.258.170.000104
S246R246TaGaaCa11B.1.258.170.000104
S246R246TaGaaCa11B.1.3110.000275
S246R246IaGaaTa11B.1.3110.000275
S246R246RAgaCga11B.1.3320.003497
S246R246TaGaaCa11B.1.3510.00003
S246R246GAgaGga11B.1.351.30.000876
S246R246SagAagT11B.1.360.000146
S246R246GAgaGga11B.1.360.000146
S246R246TaGaaCa11B.1.36.120.009615
S246R246RagAagG11B.1.36.180.00042
S246R246RagAagG11B.1.36.310.001751
S246R246IaGaaTa11B.1.362.20.004717
S246R246IaGaaTa11B.1.3690.000285
S246R246TaGaaCa11B.1.3690.000285
S246R246IaGaaTa11B.1.3950.007042
S246R246TaGaaCa11B.1.4000.000429
S246R246KaGaaAa11B.1.4050.012346
S246R246delAGA---11B.1.4270.00005
S246R246GAgaGga11B.1.4270.00005
S246R246RAgaCga11B.1.4270.00005
S246R246IaGaaTa11B.1.4280.00102
S246R246TaGaaCa11B.1.438.10.000107
S246R246RAgaCga11B.1.4620.007246
S246R246KaGaaAa11B.1.466.20.000391
S246R246IaGaaTa11B.1.466.20.000391
S246R246KaGaaAa11B.1.4680.005714
S246R246IaGaaTa11B.1.4780.011765
S246R246IaGaaTa11B.1.5250.000113
S246R246KaGaaAa11B.1.5260.000024
S246R246SagAagT11B.1.5260.000024
S246R246IaGaaTa11B.1.5440.006024
S246R246IaGaaTa11B.1.5540.004405
S246R246delAGA---11B.1.5610.000397
S246R246IaGaaTa11B.1.5610.000397
S246R246delAGA---11B.1.5750.000303
S246R246TaGaaCa11B.1.5760.000907
S246R246RAgaCga11B.1.617.20.000004
S246R246delAGA---11B.1.6200.000946
S246R246TaGaaCa11B.1.6200.000946
S246R246TaGaaCa11B.1.6210.000089
S246R246IaGaaTa11B.1.6210.000089
S246R246EAGaGAa11B.1.6210.000089
S246R246IaGaaTa11B.1.6270.00202
S246R246KaGaaAa11B.1.6330.041667
S246R246IaGaaTa11B.230.002924
S246R246IaGaaTa11B.30.000831
S246R246SagAagC11B.400.000364
S246R246delAGA---11C.300.001727
S246R246IaGaaTa11C.36.30.000567
S246R246delAGA---11C.36.30.000567
S246R246delAGA---11C.40.01
S246R246delAGA---11C.60.037037
S246R246IaGaaTa11D.20.000075
S246R246delAGA---11L.10.001905
S246R246IaGaaTa11P.10.000016
S246R246RagAagG11P.10.000016
S246R246GAgaGga11P.1.10.000318
S246R246delAGA---11P.1.10.000318
S246R246delAGA---11P.1.120.000484
S246R246GAgaGga11P.1.140.000048
S246R246KaGaaAa11P.20.000187
S246R246IaGaaTa11P.20.000187
S246R246delAGA---11Q.80.000165
S246R246IaGaaTa11Q.80.000165