CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 246 | R246del | del | AGA | --- | 8179 | 8179 | 1 | 22298-22300 | |
S | 246 | R246G | nonsyn | Aga | Gga | 864 | 863 | 0.998843 | 22298-22300 | |
S | 246 | R246G | nonsyn | AgA | GgT | 864 | 1 | 0.00115741 | 22298-22300 | |
S | 246 | R246I | nonsyn | aGa | aTa | 803 | 802 | 0.998755 | 22298-22300 | |
S | 246 | R246I | nonsyn | aGA | aTT | 803 | 1 | 0.00124533 | 22298-22300 | |
S | 246 | R246T | nonsyn | aGa | aCa | 450 | 447 | 0.993333 | 22298-22300 | |
S | 246 | R246T | nonsyn | aGA | aCT | 450 | 3 | 0.00666667 | 22298-22300 | |
S | 246 | R246K | nonsyn | aGa | aAa | 320 | 320 | 1 | 22298-22300 | |
S | 246 | R246R | syn | agA | agG | 144 | 133 | 0.923611 | 22298-22300 | |
S | 246 | R246R | syn | Aga | Cga | 144 | 11 | 0.0763889 | 22298-22300 | |
S | 246 | R246S | nonsyn | agA | agC | 119 | 71 | 0.596639 | 22298-22300 | |
S | 246 | R246S | nonsyn | agA | agT | 119 | 48 | 0.403361 | 22298-22300 | |
S | 246 | R246del2 | del | aGA | a-- | 30 | 28 | 0.933333 | 22298-22300 | |
S | 246 | R246del2 | del | AGa | --a | 30 | 2 | 0.0666667 | 22298-22300 | |
S | 246 | R246E | nonsyn | AGa | GAa | 29 | 28 | 0.965517 | 22298-22300 | |
S | 246 | R246E | nonsyn | AGA | GAG | 29 | 1 | 0.0344828 | 22298-22300 | |
S | 246 | R246N | nonsyn | aGA | aAT | 15 | 15 | 1 | 22298-22300 | |
S | 246 | R246del1 | del | Aga | -ga | 15 | 8 | 0.533333 | 22298-22300 | |
S | 246 | R246del1 | del | agA | ag- | 15 | 3 | 0.2 | 22298-22300 | |
S | 246 | R246del1 | del | aGA | a-N | 15 | 2 | 0.133333 | 22298-22300 | |
S | 246 | R246del1 | del | aGA | a-T | 15 | 1 | 0.0666667 | 22298-22300 | |
S | 246 | R246del1 | del | aGa | a-a | 15 | 1 | 0.0666667 | 22298-22300 | |
S | 246 | R246X | nonsyn | Aga | Tga | 6 | 4 | 0.666667 | 22298-22300 | |
S | 246 | R246X | nonsyn | AGa | TAa | 6 | 1 | 0.166667 | 22298-22300 | |
S | 246 | R246X | nonsyn | AGA | TAG | 6 | 1 | 0.166667 | 22298-22300 | |
S | 246 | R246C | nonsyn | AgA | TgC | 1 | 1 | 1 | 22298-22300 | |
S | 246 | R246L | nonsyn | AGa | TTa | 1 | 1 | 1 | 22298-22300 | |
S | 246 | R246Q | nonsyn | AGa | CAa | 1 | 1 | 1 | 22298-22300 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 246 | R246del | AGA | --- | 8179 | 8179 | All | 0.001564 |
S | 246 | R246del | AGA | --- | 7394 | 7394 | C.37 | 0.858171 |
S | 246 | R246G | Aga | Gga | 863 | 864 | All | 0.000165 |
S | 246 | R246G | AgA | GgT | 1 | 864 | All | 0 |
S | 246 | R246I | aGa | aTa | 802 | 803 | All | 0.000153 |
S | 246 | R246I | aGA | aTT | 1 | 803 | All | 0 |
S | 246 | R246G | Aga | Gga | 678 | 678 | P.1.12 | 0.32817 |
S | 246 | R246T | aGa | aCa | 447 | 450 | All | 0.000085 |
S | 246 | R246T | aGA | aCT | 3 | 450 | All | 0.000001 |
S | 246 | R246K | aGa | aAa | 320 | 320 | All | 0.000061 |
S | 246 | R246I | aGa | aTa | 267 | 267 | B.1.351 | 0.007937 |
S | 246 | R246del | AGA | --- | 267 | 267 | C.37.1 | 0.698953 |
S | 246 | R246I | aGa | aTa | 190 | 190 | B.1.1.7 | 0.00017 |
S | 246 | R246R | agA | agG | 133 | 144 | All | 0.000025 |
S | 246 | R246R | Aga | Cga | 11 | 144 | All | 0.000002 |
S | 246 | R246T | aGa | aCa | 138 | 141 | B.1.1.7 | 0.000124 |
S | 246 | R246T | aGA | aCT | 3 | 141 | B.1.1.7 | 0.000003 |
S | 246 | R246del | AGA | --- | 136 | 136 | B.1.1.7 | 0.000122 |
S | 246 | R246T | aGa | aCa | 128 | 128 | B.1.415.1 | 0.969697 |
S | 246 | R246S | agA | agC | 71 | 119 | All | 0.000014 |
S | 246 | R246S | agA | agT | 48 | 119 | All | 0.000009 |
S | 246 | R246K | aGa | aAa | 82 | 82 | AY.3 | 0.000816 |
S | 246 | R246R | agA | agG | 79 | 79 | B.1.1.7 | 0.000071 |
S | 246 | R246K | aGa | aAa | 79 | 79 | B.1.1.7 | 0.000071 |
S | 246 | R246K | aGa | aAa | 74 | 74 | R.1 | 0.006661 |
S | 246 | R246del | AGA | --- | 63 | 63 | B.1.243.2 | 0.913043 |
S | 246 | R246I | aGa | aTa | 61 | 61 | AY.4 | 0.000095 |
S | 246 | R246G | Aga | Gga | 54 | 54 | B.1.351 | 0.001605 |
S | 246 | R246S | agA | agC | 33 | 43 | B.1.1.7 | 0.00003 |
S | 246 | R246S | agA | agT | 10 | 43 | B.1.1.7 | 0.000009 |
S | 246 | R246I | aGa | aTa | 32 | 32 | B.1.617.2 | 0.00012 |
S | 246 | R246del | AGA | --- | 32 | 32 | C.40 | 0.888889 |
S | 246 | R246I | aGa | aTa | 31 | 31 | AY.42 | 0.001247 |
S | 246 | R246del2 | aGA | a-- | 28 | 30 | All | 0.000005 |
S | 246 | R246del2 | AGa | --a | 2 | 30 | All | 0 |
S | 246 | R246I | aGa | aTa | 30 | 30 | AY.43 | 0.000133 |
S | 246 | R246E | AGa | GAa | 28 | 29 | All | 0.000005 |
S | 246 | R246E | AGA | GAG | 1 | 29 | All | 0 |
S | 246 | R246G | Aga | Gga | 29 | 29 | AY.3 | 0.000288 |
S | 246 | R246del | AGA | --- | 29 | 29 | B.1 | 0.000266 |
S | 246 | R246del2 | aGA | a-- | 24 | 25 | C.37 | 0.002786 |
S | 246 | R246del2 | AGa | --a | 1 | 25 | C.37 | 0.000116 |
S | 246 | R246E | AGa | GAa | 20 | 20 | B.1.1.7 | 0.000018 |
S | 246 | R246G | Aga | Gga | 20 | 20 | B.1.1.7 | 0.000018 |
S | 246 | R246del | AGA | --- | 20 | 20 | P.1.15 | 0.004647 |
S | 246 | R246G | Aga | Gga | 19 | 19 | AY.4.2 | 0.000412 |
S | 246 | R246del | AGA | --- | 17 | 17 | B.1.177 | 0.000224 |
S | 246 | R246R | agA | agG | 16 | 16 | AY.9.1 | 0.00134 |
S | 246 | R246N | aGA | aAT | 15 | 15 | All | 0.000003 |
S | 246 | R246del1 | Aga | -ga | 8 | 15 | All | 0.000002 |
S | 246 | R246del1 | agA | ag- | 3 | 15 | All | 0.000001 |
S | 246 | R246del1 | aGA | a-N | 2 | 15 | All | 0 |
S | 246 | R246del1 | aGA | a-T | 1 | 15 | All | 0 |
S | 246 | R246del1 | aGa | a-a | 1 | 15 | All | 0 |
S | 246 | R246N | aGA | aAT | 15 | 15 | C.37 | 0.001741 |
S | 246 | R246del | AGA | --- | 14 | 14 | B.1.351.3 | 0.01227 |
S | 246 | R246G | Aga | Gga | 14 | 14 | B.1.617.2 | 0.000053 |
S | 246 | R246I | aGa | aTa | 13 | 13 | AY.44 | 0.000079 |
S | 246 | R246T | aGa | aCa | 12 | 12 | AY.103 | 0.000075 |
S | 246 | R246S | agA | agC | 10 | 11 | AY.103 | 0.000062 |
S | 246 | R246S | agA | agT | 1 | 11 | AY.103 | 0.000006 |
S | 246 | R246T | aGa | aCa | 11 | 11 | AY.4 | 0.000017 |
S | 246 | R246del | AGA | --- | 11 | 11 | B.1.1 | 0.0002 |
S | 246 | R246del | AGA | --- | 11 | 11 | B.1.2 | 0.000097 |
S | 246 | R246I | aGa | aTa | 10 | 10 | AY.5 | 0.000206 |
S | 246 | R246R | agA | agG | 10 | 10 | B.1.1.434 | 0.003486 |
S | 246 | R246del | AGA | --- | 10 | 10 | B.1.639 | 0.217391 |
S | 246 | R246T | aGa | aCa | 10 | 10 | P.1 | 0.000158 |
S | 246 | R246S | agA | agT | 7 | 9 | AY.4 | 0.000011 |
S | 246 | R246S | agA | agC | 2 | 9 | AY.4 | 0.000003 |
S | 246 | R246del | AGA | --- | 9 | 9 | B.1.429 | 0.000212 |
S | 246 | R246T | aGa | aCa | 9 | 9 | B.1.617.2 | 0.000034 |
S | 246 | R246del | AGA | --- | 9 | 9 | B.1.637 | 0.000658 |
S | 246 | R246G | Aga | Gga | 8 | 8 | AY.103 | 0.00005 |
S | 246 | R246T | aGa | aCa | 8 | 8 | AY.43 | 0.000035 |
S | 246 | R246del | AGA | --- | 8 | 8 | AY.43 | 0.000035 |
S | 246 | R246K | aGa | aAa | 8 | 8 | AY.43 | 0.000035 |
S | 246 | R246K | aGa | aAa | 8 | 8 | AY.44 | 0.000049 |
S | 246 | R246I | aGa | aTa | 8 | 8 | B.1.2 | 0.00007 |
S | 246 | R246del | AGA | --- | 8 | 8 | B.1.351 | 0.000238 |
S | 246 | R246del | AGA | --- | 8 | 8 | B.1.617.2 | 0.00003 |
S | 246 | R246S | agA | agT | 4 | 8 | B.1.617.2 | 0.000015 |
S | 246 | R246S | agA | agC | 4 | 8 | B.1.617.2 | 0.000015 |
S | 246 | R246I | aGa | aTa | 7 | 7 | AY.103 | 0.000043 |
S | 246 | R246T | aGa | aCa | 7 | 7 | AY.120.2.1 | 0.003488 |
S | 246 | R246K | aGa | aAa | 7 | 7 | AY.25 | 0.000042 |
S | 246 | R246I | aGa | aTa | 7 | 7 | AY.3.1 | 0.000597 |
S | 246 | R246del | AGA | --- | 7 | 7 | P.1 | 0.00011 |
S | 246 | R246X | Aga | Tga | 4 | 6 | All | 0.000001 |
S | 246 | R246X | AGa | TAa | 1 | 6 | All | 0 |
S | 246 | R246X | AGA | TAG | 1 | 6 | All | 0 |
S | 246 | R246I | aGa | aTa | 6 | 6 | AY.25 | 0.000036 |
S | 246 | R246S | agA | agC | 5 | 6 | AY.25 | 0.00003 |
S | 246 | R246S | agA | agT | 1 | 6 | AY.25 | 0.000006 |
S | 246 | R246G | Aga | Gga | 6 | 6 | B.1 | 0.000055 |
S | 246 | R246I | aGa | aTa | 6 | 6 | B.1.1 | 0.000109 |
S | 246 | R246K | aGa | aAa | 6 | 6 | B.1.351.1 | 0.230769 |
S | 246 | R246K | aGa | aAa | 6 | 6 | B.1.617.2 | 0.000023 |
S | 246 | R246del | AGA | --- | 5 | 5 | A.30 | 0.714286 |
S | 246 | R246R | agA | agG | 5 | 5 | AY.25 | 0.00003 |
S | 246 | R246del1 | agA | ag- | 3 | 5 | AY.29 | 0.000047 |
S | 246 | R246del1 | Aga | -ga | 2 | 5 | AY.29 | 0.000032 |
S | 246 | R246S | agA | agT | 5 | 5 | AY.3 | 0.00005 |
S | 246 | R246del | AGA | --- | 5 | 5 | AY.4 | 0.000008 |
S | 246 | R246K | aGa | aAa | 5 | 5 | AY.4 | 0.000008 |
S | 246 | R246G | Aga | Gga | 5 | 5 | AY.4 | 0.000008 |
S | 246 | R246T | aGa | aCa | 5 | 5 | AY.4.2 | 0.000108 |
S | 246 | R246I | aGa | aTa | 5 | 5 | B.1 | 0.000046 |
S | 246 | R246K | aGa | aAa | 5 | 5 | B.1.177 | 0.000066 |
S | 246 | R246T | aGa | aCa | 5 | 5 | B.1.177 | 0.000066 |
S | 246 | R246T | aGa | aCa | 5 | 5 | B.1.2 | 0.000044 |
S | 246 | R246T | aGa | aCa | 5 | 5 | D.2 | 0.000375 |
S | 246 | R246del | AGA | --- | 5 | 5 | P.5 | 0.068493 |
S | 246 | R246del | AGA | --- | 5 | 5 | Q.1 | 0.000632 |
S | 246 | R246I | aGa | aTa | 4 | 4 | AY.120 | 0.000149 |
S | 246 | R246del | AGA | --- | 4 | 4 | AY.25 | 0.000024 |
S | 246 | R246G | Aga | Gga | 4 | 4 | AY.25 | 0.000024 |
S | 246 | R246I | aGa | aTa | 4 | 4 | AY.26 | 0.000113 |
S | 246 | R246R | agA | agG | 4 | 4 | AY.3 | 0.00004 |
S | 246 | R246I | aGa | aTa | 4 | 4 | AY.34 | 0.000388 |
S | 246 | R246I | aGa | aTa | 4 | 4 | AY.39 | 0.000099 |
S | 246 | R246I | aGa | aTa | 4 | 4 | AY.4.2 | 0.000087 |
S | 246 | R246T | aGa | aCa | 4 | 4 | B.1 | 0.000037 |
S | 246 | R246R | agA | agG | 3 | 4 | B.1 | 0.000027 |
S | 246 | R246R | Aga | Cga | 1 | 4 | B.1 | 0.000009 |
S | 246 | R246I | aGa | aTa | 4 | 4 | B.1.1.214 | 0.000222 |
S | 246 | R246S | agA | agC | 3 | 4 | B.1.2 | 0.000026 |
S | 246 | R246S | agA | agT | 1 | 4 | B.1.2 | 0.000009 |
S | 246 | R246del | AGA | --- | 4 | 4 | B.1.36 | 0.000584 |
S | 246 | R246T | aGa | aCa | 4 | 4 | B.1.429 | 0.000094 |
S | 246 | R246del | AGA | --- | 4 | 4 | B.1.526 | 0.000094 |
S | 246 | R246T | aGa | aCa | 4 | 4 | B.1.617.1 | 0.000516 |
S | 246 | R246del | AGA | --- | 4 | 4 | B.1.621 | 0.000354 |
S | 246 | R246T | aGa | aCa | 4 | 4 | Q.8 | 0.00066 |
S | 246 | R246del | AGA | --- | 4 | 4 | R.1 | 0.00036 |
S | 246 | R246del | AGA | --- | 3 | 3 | AY.102 | 0.00008 |
S | 246 | R246I | aGa | aTa | 3 | 3 | AY.102 | 0.00008 |
S | 246 | R246T | aGa | aCa | 3 | 3 | AY.102 | 0.00008 |
S | 246 | R246I | aGa | aTa | 3 | 3 | AY.29 | 0.000047 |
S | 246 | R246I | aGa | aTa | 3 | 3 | AY.3 | 0.00003 |
S | 246 | R246T | aGa | aCa | 3 | 3 | AY.39 | 0.000074 |
S | 246 | R246K | aGa | aAa | 3 | 3 | AY.39 | 0.000074 |
S | 246 | R246R | agA | agG | 3 | 3 | AY.4 | 0.000005 |
S | 246 | R246del | AGA | --- | 3 | 3 | AY.4.5 | 0.000322 |
S | 246 | R246del | AGA | --- | 3 | 3 | AY.44 | 0.000018 |
S | 246 | R246I | aGa | aTa | 3 | 3 | AY.6 | 0.000123 |
S | 246 | R246T | aGa | aCa | 3 | 3 | B.1.1 | 0.000054 |
S | 246 | R246K | aGa | aAa | 3 | 3 | B.1.1 | 0.000054 |
S | 246 | R246del | AGA | --- | 3 | 3 | B.1.1.189 | 0.004539 |
S | 246 | R246T | aGa | aCa | 3 | 3 | B.1.1.28 | 0.000934 |
S | 246 | R246del | AGA | --- | 3 | 3 | B.1.1.294 | 0.003797 |
S | 246 | R246I | aGa | aTa | 3 | 3 | B.1.177 | 0.00004 |
S | 246 | R246I | aGa | aTa | 3 | 3 | B.1.214.2 | 0.001799 |
S | 246 | R246del | AGA | --- | 3 | 3 | B.1.234 | 0.000396 |
S | 246 | R246T | aGa | aCa | 3 | 3 | B.1.234 | 0.000396 |
S | 246 | R246T | aGa | aCa | 3 | 3 | B.1.36.36 | 0.001806 |
S | 246 | R246I | aGa | aTa | 3 | 3 | B.1.429 | 0.000071 |
S | 246 | R246I | aGa | aTa | 3 | 3 | B.1.524 | 0.004219 |
S | 246 | R246T | aGa | aCa | 3 | 3 | B.1.526 | 0.000071 |
S | 246 | R246del | AGA | --- | 3 | 3 | B.1.617.1 | 0.000387 |
S | 246 | R246I | aGa | aTa | 3 | 3 | B.1.632 | 0.020134 |
S | 246 | R246E | AGa | GAa | 3 | 3 | B.1.637 | 0.000219 |
S | 246 | R246T | aGa | aCa | 3 | 3 | C.11 | 0.031915 |
S | 246 | R246G | Aga | Gga | 3 | 3 | P.1 | 0.000047 |
S | 246 | R246del | AGA | --- | 2 | 2 | 0.111111 | |
S | 246 | R246G | Aga | Gga | 2 | 2 | A | 0.000774 |
S | 246 | R246del | AGA | --- | 2 | 2 | A.2.5 | 0.000998 |
S | 246 | R246del | AGA | --- | 2 | 2 | AY.100 | 0.000092 |
S | 246 | R246del | AGA | --- | 2 | 2 | AY.101 | 0.000981 |
S | 246 | R246K | aGa | aAa | 2 | 2 | AY.102 | 0.000053 |
S | 246 | R246R | Aga | Cga | 2 | 2 | AY.103 | 0.000012 |
S | 246 | R246I | aGa | aTa | 1 | 2 | AY.16.1 | 0.00047 |
S | 246 | R246I | aGA | aTT | 1 | 2 | AY.16.1 | 0.00047 |
S | 246 | R246T | aGa | aCa | 2 | 2 | AY.25 | 0.000012 |
S | 246 | R246K | aGa | aAa | 2 | 2 | AY.26 | 0.000057 |
S | 246 | R246I | aGa | aTa | 2 | 2 | AY.27 | 0.000129 |
S | 246 | R246T | aGa | aCa | 2 | 2 | AY.3 | 0.00002 |
S | 246 | R246del | AGA | --- | 2 | 2 | AY.3 | 0.00002 |
S | 246 | R246T | aGa | aCa | 2 | 2 | AY.32 | 0.001065 |
S | 246 | R246R | Aga | Cga | 2 | 2 | AY.43 | 0.000009 |
S | 246 | R246S | agA | agC | 2 | 2 | AY.43 | 0.000009 |
S | 246 | R246T | aGa | aCa | 2 | 2 | AY.44 | 0.000012 |
S | 246 | R246I | aGa | aTa | 2 | 2 | AY.46.4 | 0.000329 |
S | 246 | R246I | aGa | aTa | 2 | 2 | AY.46.6 | 0.000144 |
S | 246 | R246T | aGa | aCa | 2 | 2 | AY.47 | 0.000062 |
S | 246 | R246S | agA | agC | 2 | 2 | AY.6 | 0.000082 |
S | 246 | R246T | aGa | aCa | 2 | 2 | AY.61 | 0.00021 |
S | 246 | R246I | aGa | aTa | 2 | 2 | AY.61 | 0.00021 |
S | 246 | R246T | aGa | aCa | 2 | 2 | AY.9 | 0.000135 |
S | 246 | R246I | aGa | aTa | 2 | 2 | AY.9.1 | 0.000167 |
S | 246 | R246del | AGA | --- | 2 | 2 | AY.95 | 0.001522 |
S | 246 | R246K | aGa | aAa | 2 | 2 | B.1 | 0.000018 |
S | 246 | R246S | agA | agT | 2 | 2 | B.1 | 0.000018 |
S | 246 | R246del | AGA | --- | 2 | 2 | B.1.1.28 | 0.000622 |
S | 246 | R246T | aGa | aCa | 2 | 2 | B.1.1.337 | 0.007194 |
S | 246 | R246del | AGA | --- | 2 | 2 | B.1.1.432 | 0.002532 |
S | 246 | R246del | AGA | --- | 2 | 2 | B.1.1.464 | 0.002946 |
S | 246 | R246T | aGa | aCa | 2 | 2 | B.1.160 | 0.000062 |
S | 246 | R246G | Aga | Gga | 2 | 2 | B.1.177 | 0.000026 |
S | 246 | R246K | aGa | aAa | 2 | 2 | B.1.177.20 | 0.003035 |
S | 246 | R246I | aGa | aTa | 2 | 2 | B.1.177.44 | 0.001038 |
S | 246 | R246T | aGa | aCa | 2 | 2 | B.1.177.5 | 0.002484 |
S | 246 | R246S | agA | agT | 2 | 2 | B.1.177.83 | 0.002963 |
S | 246 | R246K | aGa | aAa | 2 | 2 | B.1.2 | 0.000018 |
S | 246 | R246X | Aga | Tga | 2 | 2 | B.1.2 | 0.000018 |
S | 246 | R246G | Aga | Gga | 2 | 2 | B.1.332 | 0.006993 |
S | 246 | R246K | aGa | aAa | 2 | 2 | B.1.351 | 0.000059 |
S | 246 | R246T | aGa | aCa | 2 | 2 | B.1.36 | 0.000292 |
S | 246 | R246S | agA | agC | 2 | 2 | B.1.36.29 | 0.001035 |
S | 246 | R246T | aGa | aCa | 2 | 2 | B.1.409 | 0.001563 |
S | 246 | R246del | AGA | --- | 2 | 2 | B.1.416 | 0.002538 |
S | 246 | R246I | aGa | aTa | 2 | 2 | B.1.427 | 0.000101 |
S | 246 | R246R | agA | agG | 2 | 2 | B.1.429 | 0.000047 |
S | 246 | R246S | agA | agT | 1 | 2 | B.1.429 | 0.000024 |
S | 246 | R246S | agA | agC | 1 | 2 | B.1.429 | 0.000024 |
S | 246 | R246I | aGa | aTa | 2 | 2 | B.1.480 | 0.004975 |
S | 246 | R246del | AGA | --- | 2 | 2 | B.1.525 | 0.000226 |
S | 246 | R246T | aGa | aCa | 2 | 2 | B.1.525 | 0.000226 |
S | 246 | R246I | aGa | aTa | 2 | 2 | B.1.526 | 0.000047 |
S | 246 | R246I | aGa | aTa | 2 | 2 | B.1.637 | 0.000146 |
S | 246 | R246T | aGa | aCa | 2 | 2 | B.1.637 | 0.000146 |
S | 246 | R246S | agA | agT | 2 | 2 | C.37 | 0.000232 |
S | 246 | R246del1 | aGA | a-N | 2 | 2 | C.37 | 0.000232 |
S | 246 | R246K | aGa | aAa | 2 | 2 | C.37 | 0.000232 |
S | 246 | R246del2 | aGA | a-- | 2 | 2 | C.37.1 | 0.005236 |
S | 246 | R246del | AGA | --- | 2 | 2 | C.39 | 0.037736 |
S | 246 | R246del2 | aGA | a-- | 2 | 2 | C.40 | 0.055556 |
S | 246 | R246I | aGa | aTa | 2 | 2 | L.3 | 0.007092 |
S | 246 | R246S | agA | agT | 2 | 2 | P.1 | 0.000032 |
S | 246 | R246I | aGa | aTa | 2 | 2 | Q.3 | 0.00029 |
S | 246 | R246del | AGA | --- | 2 | 2 | Q.4 | 0.00091 |
S | 246 | R246T | aGa | aCa | 1 | 1 | A | 0.000387 |
S | 246 | R246R | agA | agG | 1 | 1 | A.2.5 | 0.000499 |
S | 246 | R246T | aGa | aCa | 1 | 1 | A.2.5.2 | 0.001572 |
S | 246 | R246K | aGa | aAa | 1 | 1 | AE.5 | 0.018519 |
S | 246 | R246C | AgA | TgC | 1 | 1 | All | 0 |
S | 246 | R246L | AGa | TTa | 1 | 1 | All | 0 |
S | 246 | R246Q | AGa | CAa | 1 | 1 | All | 0 |
S | 246 | R246T | aGa | aCa | 1 | 1 | AU.1 | 0.001266 |
S | 246 | R246R | agA | agG | 1 | 1 | AY.1 | 0.000396 |
S | 246 | R246I | aGa | aTa | 1 | 1 | AY.100 | 0.000046 |
S | 246 | R246S | agA | agT | 1 | 1 | AY.102 | 0.000027 |
S | 246 | R246L | AGa | TTa | 1 | 1 | AY.102 | 0.000027 |
S | 246 | R246X | AGA | TAG | 1 | 1 | AY.103 | 0.000006 |
S | 246 | R246del | AGA | --- | 1 | 1 | AY.103 | 0.000006 |
S | 246 | R246del1 | Aga | -ga | 1 | 1 | AY.103 | 0.000006 |
S | 246 | R246I | aGa | aTa | 1 | 1 | AY.109 | 0.00074 |
S | 246 | R246I | aGa | aTa | 1 | 1 | AY.110 | 0.000113 |
S | 246 | R246del | AGA | --- | 1 | 1 | AY.111 | 0.000183 |
S | 246 | R246R | agA | agG | 1 | 1 | AY.114 | 0.000231 |
S | 246 | R246I | aGa | aTa | 1 | 1 | AY.114 | 0.000231 |
S | 246 | R246del | AGA | --- | 1 | 1 | AY.118 | 0.000063 |
S | 246 | R246T | aGa | aCa | 1 | 1 | AY.118 | 0.000063 |
S | 246 | R246G | AgA | GgT | 1 | 1 | AY.121 | 0.000135 |
S | 246 | R246K | aGa | aAa | 1 | 1 | AY.13 | 0.000161 |
S | 246 | R246S | agA | agT | 1 | 1 | AY.16.1 | 0.00047 |
S | 246 | R246R | Aga | Cga | 1 | 1 | AY.20 | 0.000039 |
S | 246 | R246S | agA | agT | 1 | 1 | AY.23 | 0.00007 |
S | 246 | R246S | agA | agC | 1 | 1 | AY.23.1 | 0.000417 |
S | 246 | R246I | aGa | aTa | 1 | 1 | AY.23.1 | 0.000417 |
S | 246 | R246K | aGa | aAa | 1 | 1 | AY.23.1 | 0.000417 |
S | 246 | R246del1 | Aga | -ga | 1 | 1 | AY.25 | 0.000006 |
S | 246 | R246del1 | Aga | -ga | 1 | 1 | AY.3 | 0.00001 |
S | 246 | R246R | agA | agG | 1 | 1 | AY.33 | 0.000067 |
S | 246 | R246I | aGa | aTa | 1 | 1 | AY.34.1 | 0.00051 |
S | 246 | R246K | aGa | aAa | 1 | 1 | AY.35 | 0.000233 |
S | 246 | R246T | aGa | aCa | 1 | 1 | AY.36 | 0.000148 |
S | 246 | R246I | aGa | aTa | 1 | 1 | AY.36 | 0.000148 |
S | 246 | R246G | Aga | Gga | 1 | 1 | AY.37 | 0.000316 |
S | 246 | R246S | agA | agT | 1 | 1 | AY.4.2 | 0.000022 |
S | 246 | R246K | aGa | aAa | 1 | 1 | AY.42 | 0.00004 |
S | 246 | R246del1 | Aga | -ga | 1 | 1 | AY.43 | 0.000004 |
S | 246 | R246G | Aga | Gga | 1 | 1 | AY.43 | 0.000004 |
S | 246 | R246Q | AGa | CAa | 1 | 1 | AY.44 | 0.000006 |
S | 246 | R246S | agA | agT | 1 | 1 | AY.44 | 0.000006 |
S | 246 | R246G | Aga | Gga | 1 | 1 | AY.44 | 0.000006 |
S | 246 | R246X | AGa | TAa | 1 | 1 | AY.44 | 0.000006 |
S | 246 | R246K | aGa | aAa | 1 | 1 | AY.46 | 0.000104 |
S | 246 | R246I | aGa | aTa | 1 | 1 | AY.46.5 | 0.000198 |
S | 246 | R246del | AGA | --- | 1 | 1 | AY.46.6 | 0.000072 |
S | 246 | R246I | aGa | aTa | 1 | 1 | AY.47 | 0.000031 |
S | 246 | R246S | agA | agC | 1 | 1 | AY.5 | 0.000021 |
S | 246 | R246del | AGA | --- | 1 | 1 | AY.5 | 0.000021 |
S | 246 | R246G | Aga | Gga | 1 | 1 | AY.5.3 | 0.000337 |
S | 246 | R246R | agA | agG | 1 | 1 | AY.5.3 | 0.000337 |
S | 246 | R246E | AGA | GAG | 1 | 1 | AY.52 | 0.000814 |
S | 246 | R246I | aGa | aTa | 1 | 1 | AY.53 | 0.000288 |
S | 246 | R246T | aGa | aCa | 1 | 1 | AY.53 | 0.000288 |
S | 246 | R246T | aGa | aCa | 1 | 1 | AY.54 | 0.000095 |
S | 246 | R246S | agA | agT | 1 | 1 | AY.55 | 0.000917 |
S | 246 | R246T | aGa | aCa | 1 | 1 | AY.60 | 0.000938 |
S | 246 | R246del | AGA | --- | 1 | 1 | AY.65 | 0.000533 |
S | 246 | R246T | aGa | aCa | 1 | 1 | AY.7.1 | 0.000113 |
S | 246 | R246I | aGa | aTa | 1 | 1 | AY.7.1 | 0.000113 |
S | 246 | R246T | aGa | aCa | 1 | 1 | AY.72 | 0.001361 |
S | 246 | R246del | AGA | --- | 1 | 1 | AY.75 | 0.000056 |
S | 246 | R246I | aGa | aTa | 1 | 1 | AY.75 | 0.000056 |
S | 246 | R246E | AGa | GAa | 1 | 1 | AY.75 | 0.000056 |
S | 246 | R246I | aGa | aTa | 1 | 1 | AY.75.1 | 0.00018 |
S | 246 | R246T | aGa | aCa | 1 | 1 | AY.9.1 | 0.000084 |
S | 246 | R246R | agA | agG | 1 | 1 | AY.9.2 | 0.000037 |
S | 246 | R246S | agA | agT | 1 | 1 | AY.9.2 | 0.000037 |
S | 246 | R246K | aGa | aAa | 1 | 1 | AY.9.2 | 0.000037 |
S | 246 | R246I | aGa | aTa | 1 | 1 | AY.95 | 0.000761 |
S | 246 | R246I | aGa | aTa | 1 | 1 | AY.98 | 0.000079 |
S | 246 | R246del | AGA | --- | 1 | 1 | AY.98 | 0.000079 |
S | 246 | R246S | agA | agC | 1 | 1 | AY.98 | 0.000079 |
S | 246 | R246G | Aga | Gga | 1 | 1 | AY.98.1 | 0.000048 |
S | 246 | R246I | aGa | aTa | 1 | 1 | AZ.1 | 0.000867 |
S | 246 | R246I | aGa | aTa | 1 | 1 | AZ.5 | 0.003509 |
S | 246 | R246C | AgA | TgC | 1 | 1 | B | 0.000128 |
S | 246 | R246del2 | AGa | --a | 1 | 1 | B.1 | 0.000009 |
S | 246 | R246E | AGa | GAa | 1 | 1 | B.1 | 0.000009 |
S | 246 | R246del1 | Aga | -ga | 1 | 1 | B.1 | 0.000009 |
S | 246 | R246R | Aga | Cga | 1 | 1 | B.1.1 | 0.000018 |
S | 246 | R246del1 | aGA | a-T | 1 | 1 | B.1.1 | 0.000018 |
S | 246 | R246E | AGa | GAa | 1 | 1 | B.1.1 | 0.000018 |
S | 246 | R246del | AGA | --- | 1 | 1 | B.1.1.1 | 0.000327 |
S | 246 | R246K | aGa | aAa | 1 | 1 | B.1.1.10 | 0.001115 |
S | 246 | R246T | aGa | aCa | 1 | 1 | B.1.1.153 | 0.001095 |
S | 246 | R246del | AGA | --- | 1 | 1 | B.1.1.159 | 0.004673 |
S | 246 | R246T | aGa | aCa | 1 | 1 | B.1.1.169 | 0.018182 |
S | 246 | R246R | agA | agG | 1 | 1 | B.1.1.176 | 0.000439 |
S | 246 | R246G | Aga | Gga | 1 | 1 | B.1.1.207 | 0.001182 |
S | 246 | R246K | aGa | aAa | 1 | 1 | B.1.1.208 | 0.012195 |
S | 246 | R246S | agA | agC | 1 | 1 | B.1.1.214 | 0.000055 |
S | 246 | R246I | aGa | aTa | 1 | 1 | B.1.1.222 | 0.000204 |
S | 246 | R246T | aGa | aCa | 1 | 1 | B.1.1.25 | 0.000569 |
S | 246 | R246T | aGa | aCa | 1 | 1 | B.1.1.265 | 0.003155 |
S | 246 | R246del | AGA | --- | 1 | 1 | B.1.1.284 | 0.000107 |
S | 246 | R246T | aGa | aCa | 1 | 1 | B.1.1.284 | 0.000107 |
S | 246 | R246del | AGA | --- | 1 | 1 | B.1.1.298 | 0.000862 |
S | 246 | R246T | aGa | aCa | 1 | 1 | B.1.1.304 | 0.002809 |
S | 246 | R246del | AGA | --- | 1 | 1 | B.1.1.317 | 0.000412 |
S | 246 | R246I | aGa | aTa | 1 | 1 | B.1.1.318 | 0.000302 |
S | 246 | R246del | AGA | --- | 1 | 1 | B.1.1.318 | 0.000302 |
S | 246 | R246T | aGa | aCa | 1 | 1 | B.1.1.318 | 0.000302 |
S | 246 | R246I | aGa | aTa | 1 | 1 | B.1.1.324 | 0.052632 |
S | 246 | R246G | Aga | Gga | 1 | 1 | B.1.1.33 | 0.000421 |
S | 246 | R246del1 | Aga | -ga | 1 | 1 | B.1.1.331 | 0.011628 |
S | 246 | R246I | aGa | aTa | 1 | 1 | B.1.1.334 | 0.016393 |
S | 246 | R246K | aGa | aAa | 1 | 1 | B.1.1.348 | 0.000796 |
S | 246 | R246del | AGA | --- | 1 | 1 | B.1.1.348 | 0.000796 |
S | 246 | R246del | AGA | --- | 1 | 1 | B.1.1.368 | 0.003086 |
S | 246 | R246S | agA | agT | 1 | 1 | B.1.1.37 | 0.000193 |
S | 246 | R246del | AGA | --- | 1 | 1 | B.1.1.372 | 0.000689 |
S | 246 | R246del | AGA | --- | 1 | 1 | B.1.1.389 | 0.006061 |
S | 246 | R246I | aGa | aTa | 1 | 1 | B.1.1.39 | 0.00051 |
S | 246 | R246I | aGa | aTa | 1 | 1 | B.1.1.416 | 0.000905 |
S | 246 | R246G | Aga | Gga | 1 | 1 | B.1.1.420 | 0.001006 |
S | 246 | R246T | aGa | aCa | 1 | 1 | B.1.1.434 | 0.000349 |
S | 246 | R246del | AGA | --- | 1 | 1 | B.1.1.434 | 0.000349 |
S | 246 | R246G | Aga | Gga | 1 | 1 | B.1.1.487 | 0.005587 |
S | 246 | R246del | AGA | --- | 1 | 1 | B.1.1.528 | 0.004808 |
S | 246 | R246del | AGA | --- | 1 | 1 | B.1.1.54 | 0.003021 |
S | 246 | R246K | aGa | aAa | 1 | 1 | B.1.1.8 | 0.003584 |
S | 246 | R246S | agA | agC | 1 | 1 | B.1.157 | 0.002985 |
S | 246 | R246K | aGa | aAa | 1 | 1 | B.1.160 | 0.000031 |
S | 246 | R246I | aGa | aTa | 1 | 1 | B.1.160 | 0.000031 |
S | 246 | R246G | Aga | Gga | 1 | 1 | B.1.160.29 | 0.004219 |
S | 246 | R246R | agA | agG | 1 | 1 | B.1.177 | 0.000013 |
S | 246 | R246S | agA | agC | 1 | 1 | B.1.177 | 0.000013 |
S | 246 | R246T | aGa | aCa | 1 | 1 | B.1.177.15 | 0.000631 |
S | 246 | R246G | Aga | Gga | 1 | 1 | B.1.177.17 | 0.000821 |
S | 246 | R246I | aGa | aTa | 1 | 1 | B.1.177.18 | 0.00116 |
S | 246 | R246I | aGa | aTa | 1 | 1 | B.1.177.19 | 0.001431 |
S | 246 | R246X | Aga | Tga | 1 | 1 | B.1.177.23 | 0.003236 |
S | 246 | R246T | aGa | aCa | 1 | 1 | B.1.177.35 | 0.000691 |
S | 246 | R246del | AGA | --- | 1 | 1 | B.1.177.60 | 0.000218 |
S | 246 | R246T | aGa | aCa | 1 | 1 | B.1.177.65 | 0.000665 |
S | 246 | R246del | AGA | --- | 1 | 1 | B.1.177.69 | 0.001484 |
S | 246 | R246X | Aga | Tga | 1 | 1 | B.1.177.7 | 0.000165 |
S | 246 | R246I | aGa | aTa | 1 | 1 | B.1.189 | 0.004292 |
S | 246 | R246I | aGa | aTa | 1 | 1 | B.1.199 | 0.004132 |
S | 246 | R246del1 | aGa | a-a | 1 | 1 | B.1.2 | 0.000009 |
S | 246 | R246G | Aga | Gga | 1 | 1 | B.1.2 | 0.000009 |
S | 246 | R246E | AGa | GAa | 1 | 1 | B.1.2 | 0.000009 |
S | 246 | R246I | aGa | aTa | 1 | 1 | B.1.210 | 0.002132 |
S | 246 | R246T | aGa | aCa | 1 | 1 | B.1.218 | 0.005155 |
S | 246 | R246del | AGA | --- | 1 | 1 | B.1.221 | 0.000071 |
S | 246 | R246T | aGa | aCa | 1 | 1 | B.1.221 | 0.000071 |
S | 246 | R246I | aGa | aTa | 1 | 1 | B.1.221 | 0.000071 |
S | 246 | R246T | aGa | aCa | 1 | 1 | B.1.232 | 0.000537 |
S | 246 | R246K | aGa | aAa | 1 | 1 | B.1.235 | 0.002519 |
S | 246 | R246del | AGA | --- | 1 | 1 | B.1.237 | 0.004975 |
S | 246 | R246T | aGa | aCa | 1 | 1 | B.1.243 | 0.00007 |
S | 246 | R246del | AGA | --- | 1 | 1 | B.1.243 | 0.00007 |
S | 246 | R246K | aGa | aAa | 1 | 1 | B.1.243 | 0.00007 |
S | 246 | R246del | AGA | --- | 1 | 1 | B.1.258 | 0.000067 |
S | 246 | R246I | aGa | aTa | 1 | 1 | B.1.258 | 0.000067 |
S | 246 | R246I | aGa | aTa | 1 | 1 | B.1.258.11 | 0.000396 |
S | 246 | R246I | aGa | aTa | 1 | 1 | B.1.258.17 | 0.000104 |
S | 246 | R246T | aGa | aCa | 1 | 1 | B.1.258.17 | 0.000104 |
S | 246 | R246T | aGa | aCa | 1 | 1 | B.1.311 | 0.000275 |
S | 246 | R246I | aGa | aTa | 1 | 1 | B.1.311 | 0.000275 |
S | 246 | R246R | Aga | Cga | 1 | 1 | B.1.332 | 0.003497 |
S | 246 | R246T | aGa | aCa | 1 | 1 | B.1.351 | 0.00003 |
S | 246 | R246G | Aga | Gga | 1 | 1 | B.1.351.3 | 0.000876 |
S | 246 | R246S | agA | agT | 1 | 1 | B.1.36 | 0.000146 |
S | 246 | R246G | Aga | Gga | 1 | 1 | B.1.36 | 0.000146 |
S | 246 | R246T | aGa | aCa | 1 | 1 | B.1.36.12 | 0.009615 |
S | 246 | R246R | agA | agG | 1 | 1 | B.1.36.18 | 0.00042 |
S | 246 | R246R | agA | agG | 1 | 1 | B.1.36.31 | 0.001751 |
S | 246 | R246I | aGa | aTa | 1 | 1 | B.1.362.2 | 0.004717 |
S | 246 | R246I | aGa | aTa | 1 | 1 | B.1.369 | 0.000285 |
S | 246 | R246T | aGa | aCa | 1 | 1 | B.1.369 | 0.000285 |
S | 246 | R246I | aGa | aTa | 1 | 1 | B.1.395 | 0.007042 |
S | 246 | R246T | aGa | aCa | 1 | 1 | B.1.400 | 0.000429 |
S | 246 | R246K | aGa | aAa | 1 | 1 | B.1.405 | 0.012346 |
S | 246 | R246del | AGA | --- | 1 | 1 | B.1.427 | 0.00005 |
S | 246 | R246G | Aga | Gga | 1 | 1 | B.1.427 | 0.00005 |
S | 246 | R246R | Aga | Cga | 1 | 1 | B.1.427 | 0.00005 |
S | 246 | R246I | aGa | aTa | 1 | 1 | B.1.428 | 0.00102 |
S | 246 | R246T | aGa | aCa | 1 | 1 | B.1.438.1 | 0.000107 |
S | 246 | R246R | Aga | Cga | 1 | 1 | B.1.462 | 0.007246 |
S | 246 | R246K | aGa | aAa | 1 | 1 | B.1.466.2 | 0.000391 |
S | 246 | R246I | aGa | aTa | 1 | 1 | B.1.466.2 | 0.000391 |
S | 246 | R246K | aGa | aAa | 1 | 1 | B.1.468 | 0.005714 |
S | 246 | R246I | aGa | aTa | 1 | 1 | B.1.478 | 0.011765 |
S | 246 | R246I | aGa | aTa | 1 | 1 | B.1.525 | 0.000113 |
S | 246 | R246K | aGa | aAa | 1 | 1 | B.1.526 | 0.000024 |
S | 246 | R246S | agA | agT | 1 | 1 | B.1.526 | 0.000024 |
S | 246 | R246I | aGa | aTa | 1 | 1 | B.1.544 | 0.006024 |
S | 246 | R246I | aGa | aTa | 1 | 1 | B.1.554 | 0.004405 |
S | 246 | R246del | AGA | --- | 1 | 1 | B.1.561 | 0.000397 |
S | 246 | R246I | aGa | aTa | 1 | 1 | B.1.561 | 0.000397 |
S | 246 | R246del | AGA | --- | 1 | 1 | B.1.575 | 0.000303 |
S | 246 | R246T | aGa | aCa | 1 | 1 | B.1.576 | 0.000907 |
S | 246 | R246R | Aga | Cga | 1 | 1 | B.1.617.2 | 0.000004 |
S | 246 | R246del | AGA | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 246 | R246T | aGa | aCa | 1 | 1 | B.1.620 | 0.000946 |
S | 246 | R246T | aGa | aCa | 1 | 1 | B.1.621 | 0.000089 |
S | 246 | R246I | aGa | aTa | 1 | 1 | B.1.621 | 0.000089 |
S | 246 | R246E | AGa | GAa | 1 | 1 | B.1.621 | 0.000089 |
S | 246 | R246I | aGa | aTa | 1 | 1 | B.1.627 | 0.00202 |
S | 246 | R246K | aGa | aAa | 1 | 1 | B.1.633 | 0.041667 |
S | 246 | R246I | aGa | aTa | 1 | 1 | B.23 | 0.002924 |
S | 246 | R246I | aGa | aTa | 1 | 1 | B.3 | 0.000831 |
S | 246 | R246S | agA | agC | 1 | 1 | B.40 | 0.000364 |
S | 246 | R246del | AGA | --- | 1 | 1 | C.30 | 0.001727 |
S | 246 | R246I | aGa | aTa | 1 | 1 | C.36.3 | 0.000567 |
S | 246 | R246del | AGA | --- | 1 | 1 | C.36.3 | 0.000567 |
S | 246 | R246del | AGA | --- | 1 | 1 | C.4 | 0.01 |
S | 246 | R246del | AGA | --- | 1 | 1 | C.6 | 0.037037 |
S | 246 | R246I | aGa | aTa | 1 | 1 | D.2 | 0.000075 |
S | 246 | R246del | AGA | --- | 1 | 1 | L.1 | 0.001905 |
S | 246 | R246I | aGa | aTa | 1 | 1 | P.1 | 0.000016 |
S | 246 | R246R | agA | agG | 1 | 1 | P.1 | 0.000016 |
S | 246 | R246G | Aga | Gga | 1 | 1 | P.1.1 | 0.000318 |
S | 246 | R246del | AGA | --- | 1 | 1 | P.1.1 | 0.000318 |
S | 246 | R246del | AGA | --- | 1 | 1 | P.1.12 | 0.000484 |
S | 246 | R246G | Aga | Gga | 1 | 1 | P.1.14 | 0.000048 |
S | 246 | R246K | aGa | aAa | 1 | 1 | P.2 | 0.000187 |
S | 246 | R246I | aGa | aTa | 1 | 1 | P.2 | 0.000187 |
S | 246 | R246del | AGA | --- | 1 | 1 | Q.8 | 0.000165 |
S | 246 | R246I | aGa | aTa | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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