CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 243

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	243	A243del		del	GCT	---	40472	40472	1	22289-22291
S	243	A243S		nonsyn	Gct	Tct	3898	3897	0.999743	22289-22291
S	243	A243S		nonsyn	GcT	TcA	3898	1	0.000256542	22289-22291
S	243	A243del1		del	Gct	-ct	916	898	0.980349	22289-22291
S	243	A243del1		del	gcT	gc-	916	13	0.0141921	22289-22291
S	243	A243del1		del	GCt	-Nt	916	3	0.00327511	22289-22291
S	243	A243del1		del	GCT	-NN	916	2	0.00218341	22289-22291
S	243	A243V		nonsyn	gCt	gTt	860	860	1	22289-22291
S	243	A243A		syn	gcT	gcC	331	290	0.876133	22289-22291
S	243	A243A		syn	gcT	gcG	331	28	0.0845921	22289-22291
S	243	A243A		syn	gcT	gcA	331	13	0.0392749	22289-22291
S	243	A243T		nonsyn	Gct	Act	193	192	0.994819	22289-22291
S	243	A243T		nonsyn	GcT	AcA	193	1	0.00518135	22289-22291
S	243	A243P		nonsyn	Gct	Cct	48	48	1	22289-22291
S	243	A243G		nonsyn	gCt	gGt	43	43	1	22289-22291
S	243	A243D		nonsyn	gCt	gAt	32	31	0.96875	22289-22291
S	243	A243D		nonsyn	gCT	gAC	32	1	0.03125	22289-22291
S	243	A243del2		del	GCT	--N	26	13	0.5	22289-22291
S	243	A243del2		del	GCt	--t	26	11	0.423077	22289-22291
S	243	A243del2		del	gCT	g--	26	2	0.0769231	22289-22291
S	243	A243L		nonsyn	GCT	TTA	1	1	1	22289-22291
S	243	A243H		nonsyn	GCt	CAt	1	1	1	22289-22291
S	243	A243C		nonsyn	GCt	TGt	1	1	1	22289-22291
S	243	A243F		nonsyn	GCt	TTt	1	1	1	22289-22291
S	243	A243R		nonsyn	GCT	AGA	1	1	1	22289-22291

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	243	A243del	GCT	---	40472	40472	All	0.007741
S	243	A243del	GCT	---	30131	30131	B.1.351	0.89569
S	243	A243S	Gct	Tct	3897	3898	All	0.000745
S	243	A243S	GcT	TcA	1	3898	All	0
S	243	A243del	GCT	---	3151	3151	B.1.351.2	0.953404
S	243	A243del	GCT	---	1031	1031	B.1.351.3	0.903593
S	243	A243del	GCT	---	999	999	B.1.620	0.945128
S	243	A243S	Gct	Tct	950	950	B.1.1.7	0.00085
S	243	A243del1	Gct	-ct	898	916	All	0.000172
S	243	A243del1	gcT	gc-	13	916	All	0.000002
S	243	A243del1	GCt	-Nt	3	916	All	0.000001
S	243	A243del1	GCT	-NN	2	916	All	0
S	243	A243S	Gct	Tct	899	899	AY.29	0.01418
S	243	A243V	gCt	gTt	860	860	All	0.000164
S	243	A243del1	Gct	-ct	830	830	B.1.351.5	0.497602
S	243	A243del	GCT	---	730	730	AY.4	0.001136
S	243	A243del	GCT	---	649	649	B.1.1.7	0.000581
S	243	A243del	GCT	---	619	619	B.1.351.5	0.371103
S	243	A243del	GCT	---	371	371	P.3	0.591707
S	243	A243V	gCt	gTt	367	367	B.1.1.7	0.000329
S	243	A243del	GCT	---	337	337	B.1	0.003087
S	243	A243A	gcT	gcC	290	331	All	0.000055
S	243	A243A	gcT	gcG	28	331	All	0.000005
S	243	A243A	gcT	gcA	13	331	All	0.000002
S	243	A243S	Gct	Tct	320	320	AY.4	0.000498
S	243	A243S	Gct	Tct	223	223	AY.25	0.001341
S	243	A243del	GCT	---	219	219	C.1.2	0.931915
S	243	A243T	Gct	Act	192	193	All	0.000037
S	243	A243T	GcT	AcA	1	193	All	0
S	243	A243del	GCT	---	180	180	B.1.617.2	0.000678
S	243	A243del	GCT	---	176	176	B.1.630	0.921466
S	243	A243S	Gct	Tct	170	170	B.1.429	0.004
S	243	A243S	Gct	Tct	145	146	AY.5	0.002994
S	243	A243S	GcT	TcA	1	146	AY.5	0.000021
S	243	A243S	Gct	Tct	133	133	B.1.525	0.01505
S	243	A243del	GCT	---	109	109	AY.44	0.000663
S	243	A243T	Gct	Act	99	99	B.1.351	0.002943
S	243	A243del	GCT	---	95	95	AY.4.2	0.00206
S	243	A243del	GCT	---	90	90	AY.43	0.000399
S	243	A243del	GCT	---	83	83	AY.25	0.000499
S	243	A243V	gCt	gTt	83	83	AY.4	0.000129
S	243	A243S	Gct	Tct	82	82	B.1.617.2	0.000309
S	243	A243del	GCT	---	76	76	B.1.1	0.001379
S	243	A243del	GCT	---	72	72	AY.103	0.000447
S	243	A243del	GCT	---	62	62	AY.3	0.000617
S	243	A243S	Gct	Tct	62	62	P.1	0.000977
S	243	A243S	Gct	Tct	57	57	B.1.2	0.000502
S	243	A243del	GCT	---	54	54	P.1	0.000851
S	243	A243A	gcT	gcC	54	54	R.1	0.00486
S	243	A243V	gCt	gTt	50	50	AY.103	0.00031
S	243	A243del	GCT	---	50	50	AY.120	0.001859
S	243	A243S	Gct	Tct	49	49	AY.103	0.000304
S	243	A243P	Gct	Cct	48	48	All	0.000009
S	243	A243del	GCT	---	48	48	B.1.2	0.000423
S	243	A243S	Gct	Tct	46	46	AY.43	0.000204
S	243	A243S	Gct	Tct	46	46	B.1.139	0.033724
S	243	A243S	Gct	Tct	45	45	B.1	0.000412
S	243	A243A	gcT	gcC	41	45	B.1.1.7	0.000037
S	243	A243A	gcT	gcG	2	45	B.1.1.7	0.000002
S	243	A243A	gcT	gcA	2	45	B.1.1.7	0.000002
S	243	A243G	gCt	gGt	43	43	All	0.000008
S	243	A243del	GCT	---	41	41	B.1.177	0.00054
S	243	A243del1	Gct	-ct	40	40	B.1.351	0.001189
S	243	A243del	GCT	---	39	39	AY.29	0.000615
S	243	A243V	gCt	gTt	39	39	B.1.1.228	0.118902
S	243	A243del	GCT	---	39	39	B.1.427	0.001969
S	243	A243A	gcT	gcC	38	38	A.1	0.01071
S	243	A243S	Gct	Tct	38	38	AZ.5	0.133333
S	243	A243del	GCT	---	38	38	B.1.526	0.000893
S	243	A243del	GCT	---	37	37	B.1.160	0.001154
S	243	A243D	gCt	gAt	31	32	All	0.000006
S	243	A243D	gCT	gAC	1	32	All	0
S	243	A243A	gcT	gcC	32	32	B.1.1	0.000581
S	243	A243T	Gct	Act	32	32	B.1.1.7	0.000029
S	243	A243S	Gct	Tct	31	31	B.1.400	0.013299
S	243	A243V	gCt	gTt	28	28	B.1.617.2	0.000105
S	243	A243del	GCT	---	27	27	AY.119	0.000953
S	243	A243del2	GCT	--N	13	26	All	0.000002
S	243	A243del2	GCt	--t	11	26	All	0.000002
S	243	A243del2	gCT	g--	2	26	All	0
S	243	A243S	Gct	Tct	26	26	B.1.582	0.012758
S	243	A243S	Gct	Tct	24	24	B.1.351.5	0.014388
S	243	A243G	gCt	gGt	24	24	B.1.617.2	0.00009
S	243	A243del	GCT	---	23	23	B.1.429	0.000541
S	243	A243V	gCt	gTt	22	22	B.1.177	0.00029
S	243	A243S	Gct	Tct	21	21	AY.44	0.000128
S	243	A243S	Gct	Tct	21	21	B.1.1.519	0.000834
S	243	A243del	GCT	---	20	20	AY.36	0.002964
S	243	A243S	Gct	Tct	20	20	B.1.177	0.000263
S	243	A243A	gcT	gcC	13	19	AY.4	0.00002
S	243	A243A	gcT	gcG	6	19	AY.4	0.000009
S	243	A243del	GCT	---	19	19	AY.69	0.003547
S	243	A243del	GCT	---	18	18	AY.102	0.000477
S	243	A243del	GCT	---	18	18	AY.39	0.000445
S	243	A243V	gCt	gTt	18	18	AY.44	0.00011
S	243	A243del	GCT	---	18	18	B.1.525	0.002037
S	243	A243del	GCT	---	18	18	C.36.3.1	0.048913
S	243	A243S	Gct	Tct	17	17	B.1.427	0.000858
S	243	A243del	GCT	---	17	17	B.1.636	0.114094
S	243	A243S	Gct	Tct	16	16	AY.120.1	0.005136
S	243	A243del	GCT	---	16	16	AY.20	0.000622
S	243	A243V	gCt	gTt	16	16	AY.3	0.000159
S	243	A243del	GCT	---	16	16	AY.47	0.000498
S	243	A243V	gCt	gTt	16	16	B.1.2	0.000141
S	243	A243D	gCt	gAt	16	16	B.1.351	0.000476
S	243	A243V	gCt	gTt	15	15	AY.25	0.00009
S	243	A243del	GCT	---	15	15	AY.26	0.000425
S	243	A243A	gcT	gcC	14	14	AY.44	0.000085
S	243	A243del	GCT	---	14	14	AY.46	0.001457
S	243	A243T	Gct	Act	14	14	B.1.351.2	0.004236
S	243	A243S	Gct	Tct	14	14	P.1.15	0.003253
S	243	A243S	Gct	Tct	13	13	B.1.1	0.000236
S	243	A243del	GCT	---	13	13	B.1.1.297	0.029083
S	243	A243S	Gct	Tct	13	13	B.1.160	0.000405
S	243	A243del	GCT	---	13	13	B.1.177.7	0.002143
S	243	A243del	GCT	---	13	13	B.1.177.86	0.002385
S	243	A243del	GCT	---	13	13	B.1.214.2	0.007794
S	243	A243del	GCT	---	13	13	P.1.15	0.00302
S	243	A243del	GCT	---	12	12	AY.5	0.000248
S	243	A243del	GCT	---	12	12	B	0.001534
S	243	A243S	Gct	Tct	12	12	B.1.526	0.000282
S	243	A243S	Gct	Tct	11	11	AY.114	0.002542
S	243	A243del	GCT	---	11	11	AY.33	0.000735
S	243	A243A	gcT	gcC	9	11	B.1	0.000082
S	243	A243A	gcT	gcG	1	11	B.1	0.000009
S	243	A243A	gcT	gcA	1	11	B.1	0.000009
S	243	A243S	Gct	Tct	11	11	B.1.1.284	0.001181
S	243	A243del	GCT	---	11	11	B.1.596	0.000959
S	243	A243del	GCT	---	11	11	C.37	0.001277
S	243	A243del	GCT	---	10	10	AY.23	0.000697
S	243	A243S	Gct	Tct	10	10	AY.26	0.000283
S	243	A243del	GCT	---	10	10	AY.3.1	0.000853
S	243	A243S	Gct	Tct	10	10	AY.33	0.000668
S	243	A243P	Gct	Cct	10	10	AY.4	0.000016
S	243	A243T	Gct	Act	10	10	AY.4	0.000016
S	243	A243del	GCT	---	10	10	AY.99.2	0.000922
S	243	A243V	gCt	gTt	9	9	AY.108	0.009923
S	243	A243S	Gct	Tct	9	9	AY.39	0.000222
S	243	A243S	Gct	Tct	9	9	AY.4.5	0.000967
S	243	A243del	GCT	---	9	9	AY.45	0.001095
S	243	A243del	GCT	---	9	9	AY.46.6	0.00065
S	243	A243del	GCT	---	9	9	AY.75	0.000504
S	243	A243del	GCT	---	9	9	AY.9.2	0.000331
S	243	A243S	Gct	Tct	9	9	B.1.214	0.032967
S	243	A243A	gcT	gcC	9	9	B.1.367	0.007132
S	243	A243V	gCt	gTt	9	9	B.1.429	0.000212
S	243	A243del	GCT	---	9	9	B.1.554	0.039648
S	243	A243V	gCt	gTt	9	9	C.37	0.001045
S	243	A243S	Gct	Tct	9	9	P.1.14	0.00043
S	243	A243S	Gct	Tct	9	9	Q.3	0.001305
S	243	A243del	GCT	---	8	8	AY.100	0.000368
S	243	A243S	Gct	Tct	8	8	AY.111	0.001465
S	243	A243V	gCt	gTt	8	8	AY.114	0.001849
S	243	A243S	Gct	Tct	8	8	AY.3	0.00008
S	243	A243del2	GCt	--t	5	8	AY.4	0.000008
S	243	A243del2	GCT	--N	3	8	AY.4	0.000005
S	243	A243S	Gct	Tct	8	8	AY.70	0.001668
S	243	A243V	gCt	gTt	8	8	B.1	0.000073
S	243	A243V	gCt	gTt	8	8	B.1.1	0.000145
S	243	A243P	Gct	Cct	8	8	B.1.1.7	0.000007
S	243	A243V	gCt	gTt	8	8	B.1.177.60	0.001747
S	243	A243del	GCT	---	8	8	B.1.177.73	0.00453
S	243	A243A	gcT	gcC	7	8	B.1.2	0.000062
S	243	A243A	gcT	gcG	1	8	B.1.2	0.000009
S	243	A243del	GCT	---	8	8	B.1.369	0.002282
S	243	A243del	GCT	---	8	8	B.1.595	0.002088
S	243	A243del	GCT	---	8	8	P.1.4	0.007812
S	243	A243V	gCt	gTt	7	7	AY.26	0.000198
S	243	A243G	gCt	gGt	7	7	AY.43	0.000031
S	243	A243A	gcT	gcC	6	7	AY.43	0.000027
S	243	A243A	gcT	gcG	1	7	AY.43	0.000004
S	243	A243del	GCT	---	7	7	AY.56	0.011236
S	243	A243del	GCT	---	7	7	AY.61	0.000733
S	243	A243del	GCT	---	7	7	AY.65	0.003731
S	243	A243del	GCT	---	7	7	AY.98.1	0.000339
S	243	A243S	Gct	Tct	7	7	AZ.2.1	0.056911
S	243	A243P	Gct	Cct	7	7	B.1	0.000064
S	243	A243del	GCT	---	7	7	B.1.1.519	0.000278
S	243	A243del2	GCT	--N	6	7	B.1.1.7	0.000005
S	243	A243del1	Gct	-ct	4	7	B.1.1.7	0.000004
S	243	A243del1	gcT	gc-	2	7	B.1.1.7	0.000002
S	243	A243del2	GCt	--t	1	7	B.1.1.7	0.000001
S	243	A243del1	GCT	-NN	1	7	B.1.1.7	0.000001
S	243	A243del	GCT	---	7	7	B.1.258	0.000466
S	243	A243A	gcT	gcC	5	7	B.1.617.2	0.000019
S	243	A243A	gcT	gcA	2	7	B.1.617.2	0.000008
S	243	A243del	GCT	---	7	7	B.1.621	0.00062
S	243	A243del	GCT	---	7	7	Q.1	0.000884
S	243	A243V	gCt	gTt	6	6	AY.102	0.000159
S	243	A243S	Gct	Tct	6	6	AY.102	0.000159
S	243	A243A	gcT	gcC	5	6	AY.103	0.000031
S	243	A243A	gcT	gcG	1	6	AY.103	0.000006
S	243	A243del	GCT	---	6	6	AY.34	0.000582
S	243	A243S	Gct	Tct	6	6	AY.42	0.000241
S	243	A243V	gCt	gTt	6	6	AY.43	0.000027
S	243	A243del	GCT	---	6	6	AY.74	0.000694
S	243	A243del	GCT	---	6	6	AY.75.1	0.001082
S	243	A243del1	Gct	-ct	4	6	B.1	0.000037
S	243	A243del1	gcT	gc-	2	6	B.1	0.000018
S	243	A243S	Gct	Tct	6	6	B.1.1.306	0.00263
S	243	A243del	GCT	---	6	6	B.1.1.432	0.007595
S	243	A243A	gcT	gcG	6	6	B.1.1.519	0.000238
S	243	A243S	Gct	Tct	6	6	B.1.265	0.007624
S	243	A243S	Gct	Tct	6	6	B.1.36.29	0.003104
S	243	A243V	gCt	gTt	6	6	B.1.525	0.000679
S	243	A243del	GCT	---	5	5	AY.101	0.002452
S	243	A243del	GCT	---	5	5	AY.113	0.000712
S	243	A243S	Gct	Tct	5	5	AY.121	0.000677
S	243	A243S	Gct	Tct	5	5	AY.20	0.000194
S	243	A243S	Gct	Tct	5	5	AY.23	0.000349
S	243	A243del	GCT	---	5	5	AY.42	0.000201
S	243	A243S	Gct	Tct	5	5	AY.46	0.00052
S	243	A243del	GCT	---	5	5	AY.46.4	0.000823
S	243	A243S	Gct	Tct	5	5	AY.46.6	0.000361
S	243	A243del	GCT	---	5	5	AY.5.3	0.001687
S	243	A243del	GCT	---	5	5	AY.9.1	0.000419
S	243	A243S	Gct	Tct	5	5	B.1.1.277	0.003794
S	243	A243V	gCt	gTt	5	5	B.1.177.73	0.002831
S	243	A243del	GCT	---	5	5	B.1.221	0.000355
S	243	A243V	gCt	gTt	5	5	B.1.258	0.000333
S	243	A243S	Gct	Tct	5	5	B.1.36.18	0.002101
S	243	A243del	GCT	---	5	5	B.1.409	0.003906
S	243	A243S	Gct	Tct	5	5	B.1.568	0.005556
S	243	A243S	Gct	Tct	5	5	B.1.617.1	0.000645
S	243	A243S	Gct	Tct	5	5	C.37	0.00058
S	243	A243V	gCt	gTt	5	5	P.1	0.000079
S	243	A243T	Gct	Act	4	4	AY.103	0.000025
S	243	A243S	Gct	Tct	4	4	AY.106	0.00134
S	243	A243S	Gct	Tct	4	4	AY.113	0.00057
S	243	A243del	GCT	---	4	4	AY.118	0.000251
S	243	A243del	GCT	---	4	4	AY.13	0.000644
S	243	A243del	GCT	---	4	4	AY.14	0.000352
S	243	A243del1	gcT	gc-	2	4	AY.25	0.000012
S	243	A243del1	Gct	-ct	1	4	AY.25	0.000006
S	243	A243del1	GCT	-NN	1	4	AY.25	0.000006
S	243	A243S	Gct	Tct	4	4	AY.29.1	0.000882
S	243	A243V	gCt	gTt	4	4	AY.39	0.000099
S	243	A243del1	Gct	-ct	3	4	AY.4	0.000005
S	243	A243del1	GCt	-Nt	1	4	AY.4	0.000002
S	243	A243del	GCT	---	4	4	AY.54	0.000381
S	243	A243del	GCT	---	4	4	AY.95	0.003044
S	243	A243V	gCt	gTt	4	4	B.1.1.164	0.020619
S	243	A243del	GCT	---	4	4	B.1.1.318	0.001207
S	243	A243S	Gct	Tct	4	4	B.1.1.326	0.007042
S	243	A243del	GCT	---	4	4	B.1.1.389	0.024242
S	243	A243D	gCt	gAt	4	4	B.1.1.7	0.000004
S	243	A243A	gcT	gcC	4	4	B.1.177	0.000053
S	243	A243del	GCT	---	4	4	B.1.177.81	0.000757
S	243	A243S	Gct	Tct	4	4	B.1.240	0.000862
S	243	A243S	Gct	Tct	4	4	B.1.243	0.000278
S	243	A243del1	Gct	-ct	4	4	B.1.351.2	0.00121
S	243	A243del	GCT	---	4	4	B.1.36	0.000584
S	243	A243A	gcT	gcC	4	4	B.1.429	0.000094
S	243	A243V	gCt	gTt	4	4	B.1.526	0.000094
S	243	A243S	Gct	Tct	4	4	B.1.565	0.003241
S	243	A243S	Gct	Tct	4	4	B.1.596	0.000349
S	243	A243del	GCT	---	4	4	B.1.609	0.001918
S	243	A243P	Gct	Cct	4	4	B.1.617.2	0.000015
S	243	A243T	Gct	Act	4	4	B.1.620	0.003784
S	243	A243del	GCT	---	4	4	D.2	0.0003
S	243	A243del	GCT	---	4	4	P.1.1	0.001271
S	243	A243A	gcT	gcC	4	4	P.1.2	0.004624
S	243	A243del	GCT	---	4	4	P.5	0.054795
S	243	A243del	GCT	---	4	4	Q.2	0.002454
S	243	A243del	GCT	---	4	4	Q.8	0.00066
S	243	A243del	GCT	---	3	3	A	0.001161
S	243	A243del	GCT	---	3	3	AY.1	0.001187
S	243	A243del	GCT	---	3	3	AY.106	0.001005
S	243	A243del	GCT	---	3	3	AY.116.1	0.000934
S	243	A243del	GCT	---	3	3	AY.117	0.000254
S	243	A243S	Gct	Tct	3	3	AY.120	0.000112
S	243	A243S	Gct	Tct	3	3	AY.14	0.000264
S	243	A243V	gCt	gTt	3	3	AY.20	0.000117
S	243	A243A	gcT	gcA	2	3	AY.25	0.000012
S	243	A243A	gcT	gcC	1	3	AY.25	0.000006
S	243	A243del	GCT	---	3	3	AY.27	0.000194
S	243	A243A	gcT	gcC	2	3	AY.29	0.000032
S	243	A243A	gcT	gcG	1	3	AY.29	0.000016
S	243	A243del	GCT	---	3	3	AY.32	0.001597
S	243	A243A	gcT	gcC	3	3	AY.36	0.000445
S	243	A243del	GCT	---	3	3	AY.38	0.001498
S	243	A243S	Gct	Tct	3	3	AY.39.1	0.000119
S	243	A243G	gCt	gGt	3	3	AY.4	0.000005
S	243	A243del	GCT	---	3	3	AY.4.5	0.000322
S	243	A243P	Gct	Cct	3	3	AY.43	0.000013
S	243	A243A	gcT	gcC	3	3	AY.46	0.000312
S	243	A243del	GCT	---	3	3	AY.5.4	0.00083
S	243	A243V	gCt	gTt	3	3	AY.54	0.000286
S	243	A243del	GCT	---	3	3	AY.6	0.000123
S	243	A243V	gCt	gTt	3	3	AY.61	0.000314
S	243	A243del	GCT	---	3	3	AY.70	0.000626
S	243	A243S	Gct	Tct	3	3	AY.80	0.003386
S	243	A243S	Gct	Tct	3	3	AY.87	0.002498
S	243	A243S	Gct	Tct	3	3	AY.9.1	0.000251
S	243	A243S	Gct	Tct	3	3	AY.90	0.002053
S	243	A243S	Gct	Tct	3	3	AY.98.1	0.000145
S	243	A243V	gCt	gTt	3	3	B	0.000383
S	243	A243T	Gct	Act	2	3	B.1	0.000018
S	243	A243T	GcT	AcA	1	3	B.1	0.000009
S	243	A243S	Gct	Tct	3	3	B.1.1.222	0.000612
S	243	A243S	Gct	Tct	3	3	B.1.1.318	0.000905
S	243	A243del	GCT	---	3	3	B.1.1.50	0.002037
S	243	A243del	GCT	---	3	3	B.1.170	0.012931
S	243	A243del	GCT	---	3	3	B.1.177.16	0.001993
S	243	A243del	GCT	---	3	3	B.1.177.60	0.000655
S	243	A243S	Gct	Tct	3	3	B.1.177.81	0.000568
S	243	A243A	gcT	gcC	3	3	B.1.218	0.015464
S	243	A243del	GCT	---	3	3	B.1.240	0.000647
S	243	A243S	Gct	Tct	3	3	B.1.241	0.002435
S	243	A243S	Gct	Tct	3	3	B.1.258	0.0002
S	243	A243S	Gct	Tct	3	3	B.1.351	0.000089
S	243	A243del	GCT	---	3	3	B.1.416	0.003807
S	243	A243V	gCt	gTt	3	3	B.1.596	0.000261
S	243	A243del1	Gct	-ct	2	3	B.1.620	0.001892
S	243	A243del1	GCt	-Nt	1	3	B.1.620	0.000946
S	243	A243del	GCT	---	3	3	B.1.637	0.000219
S	243	A243S	Gct	Tct	3	3	B.1.637	0.000219
S	243	A243del	GCT	---	3	3	C.16	0.003181
S	243	A243A	gcT	gcC	2	3	D.2	0.00015
S	243	A243A	gcT	gcG	1	3	D.2	0.000075
S	243	A243del	GCT	---	3	3	P.1.14	0.000143
S	243	A243S	Gct	Tct	3	3	Q.1	0.000379
S	243	A243del	GCT	---	3	3	Q.3	0.000435
S	243	A243S	Gct	Tct	3	3	Q.8	0.000495
S	243	A243del	GCT	---	2	2		0.111111
S	243	A243S	Gct	Tct	2	2	A.1	0.000564
S	243	A243del	GCT	---	2	2	A.2	0.001324
S	243	A243del	GCT	---	2	2	AB.1	0.016393
S	243	A243del	GCT	---	2	2	AY.105	0.001286
S	243	A243S	Gct	Tct	2	2	AY.108	0.002205
S	243	A243del	GCT	---	2	2	AY.114	0.000462
S	243	A243S	Gct	Tct	2	2	AY.119	0.000071
S	243	A243V	gCt	gTt	2	2	AY.120.1	0.000642
S	243	A243V	gCt	gTt	2	2	AY.14	0.000176
S	243	A243T	Gct	Act	2	2	AY.20	0.000078
S	243	A243V	gCt	gTt	2	2	AY.23	0.000139
S	243	A243V	gCt	gTt	2	2	AY.29	0.000032
S	243	A243del1	gcT	gc-	2	2	AY.29	0.000032
S	243	A243A	gcT	gcC	1	2	AY.3	0.00001
S	243	A243A	gcT	gcG	1	2	AY.3	0.00001
S	243	A243S	Gct	Tct	2	2	AY.3.1	0.000171
S	243	A243del	GCT	---	2	2	AY.30	0.000791
S	243	A243S	Gct	Tct	2	2	AY.34	0.000194
S	243	A243del	GCT	---	2	2	AY.37	0.000632
S	243	A243A	gcT	gcC	1	2	AY.39	0.000025
S	243	A243A	gcT	gcG	1	2	AY.39	0.000025
S	243	A243A	gcT	gcC	2	2	AY.39.1	0.000079
S	243	A243del	GCT	---	2	2	AY.4.4	0.000818
S	243	A243D	gCt	gAt	1	2	AY.42	0.00004
S	243	A243D	gCT	gAC	1	2	AY.42	0.00004
S	243	A243T	Gct	Act	2	2	AY.44	0.000012
S	243	A243del1	gcT	gc-	1	2	AY.44	0.000006
S	243	A243del1	GCt	-Nt	1	2	AY.44	0.000006
S	243	A243S	Gct	Tct	2	2	AY.45	0.000243
S	243	A243A	gcT	gcA	2	2	AY.46.6	0.000144
S	243	A243S	Gct	Tct	2	2	AY.6	0.000082
S	243	A243del	GCT	---	2	2	AY.63	0.000774
S	243	A243del	GCT	---	2	2	AY.7	0.000392
S	243	A243S	Gct	Tct	2	2	AY.75	0.000112
S	243	A243A	gcT	gcC	2	2	AY.75	0.000112
S	243	A243P	Gct	Cct	2	2	AY.9.2	0.000073
S	243	A243S	Gct	Tct	2	2	AY.93	0.000546
S	243	A243del	GCT	---	2	2	AY.98	0.000158
S	243	A243G	gCt	gGt	2	2	AY.99.2	0.000184
S	243	A243S	Gct	Tct	2	2	AZ.2	0.001642
S	243	A243S	Gct	Tct	2	2	B	0.000256
S	243	A243del2	GCt	--t	1	2	B.1	0.000009
S	243	A243del2	gCT	g--	1	2	B.1	0.000009
S	243	A243D	gCt	gAt	2	2	B.1.1	0.000036
S	243	A243del	GCT	---	2	2	B.1.1.214	0.000111
S	243	A243del	GCT	---	2	2	B.1.1.222	0.000408
S	243	A243del	GCT	---	2	2	B.1.1.28	0.000622
S	243	A243del	GCT	---	2	2	B.1.1.294	0.002532
S	243	A243del	GCT	---	2	2	B.1.1.375	0.02381
S	243	A243del	GCT	---	2	2	B.1.1.39	0.001019
S	243	A243S	Gct	Tct	2	2	B.1.1.409	0.005666
S	243	A243del	GCT	---	2	2	B.1.1.507	0.017391
S	243	A243del	GCT	---	2	2	B.1.1.524	0.041667
S	243	A243del	GCT	---	2	2	B.1.1.528	0.009615
S	243	A243del	GCT	---	2	2	B.1.1.95	0.039216
S	243	A243A	gcT	gcC	2	2	B.1.160.9	0.014388
S	243	A243V	gCt	gTt	2	2	B.1.177.12	0.000303
S	243	A243del	GCT	---	2	2	B.1.177.12	0.000303
S	243	A243S	Gct	Tct	2	2	B.1.177.14	0.012195
S	243	A243del	GCT	---	2	2	B.1.177.2	0.009091
S	243	A243V	gCt	gTt	2	2	B.1.177.21	0.000153
S	243	A243del	GCT	---	2	2	B.1.177.31	0.022989
S	243	A243del	GCT	---	2	2	B.1.177.54	0.001213
S	243	A243del	GCT	---	2	2	B.1.177.87	0.001456
S	243	A243del1	gcT	gc-	2	2	B.1.2	0.000018
S	243	A243V	gCt	gTt	2	2	B.1.221	0.000142
S	243	A243S	Gct	Tct	2	2	B.1.232	0.001075
S	243	A243S	Gct	Tct	2	2	B.1.239	0.002442
S	243	A243del	GCT	---	2	2	B.1.243	0.000139
S	243	A243V	gCt	gTt	2	2	B.1.243	0.000139
S	243	A243del	GCT	---	2	2	B.1.258.11	0.000793
S	243	A243del	GCT	---	2	2	B.1.258.14	0.001961
S	243	A243del	GCT	---	2	2	B.1.258.17	0.000208
S	243	A243S	Gct	Tct	2	2	B.1.311	0.000549
S	243	A243del	GCT	---	2	2	B.1.332	0.006993
S	243	A243A	gcT	gcA	2	2	B.1.336	0.004878
S	243	A243del	GCT	---	2	2	B.1.336	0.004878
S	243	A243del	GCT	---	2	2	B.1.351.1	0.076923
S	243	A243V	gCt	gTt	2	2	B.1.36	0.000292
S	243	A243S	Gct	Tct	2	2	B.1.36	0.000292
S	243	A243V	gCt	gTt	2	2	B.1.36.27	0.001527
S	243	A243A	gcT	gcG	2	2	B.1.36.8	0.002
S	243	A243del	GCT	---	2	2	B.1.400	0.000858
S	243	A243del	GCT	---	2	2	B.1.404	0.002604
S	243	A243S	Gct	Tct	2	2	B.1.470	0.002809
S	243	A243del	GCT	---	2	2	B.1.517	0.000854
S	243	A243S	Gct	Tct	2	2	B.1.538	0.016129
S	243	A243S	Gct	Tct	2	2	B.1.543	0.02
S	243	A243S	Gct	Tct	2	2	B.1.561	0.000794
S	243	A243del	GCT	---	2	2	B.1.568	0.002222
S	243	A243del	GCT	---	2	2	B.1.576	0.001813
S	243	A243del	GCT	---	2	2	B.1.599	0.007299
S	243	A243del	GCT	---	2	2	B.1.617.1	0.000258
S	243	A243del	GCT	---	2	2	B.1.619	0.001742
S	243	A243del	GCT	---	2	2	B.1.623	0.001073
S	243	A243V	gCt	gTt	2	2	B.40	0.000729
S	243	A243S	Gct	Tct	2	2	B.6.6	0.001778
S	243	A243S	Gct	Tct	2	2	C.36	0.001821
S	243	A243del	GCT	---	2	2	C.36.3	0.001134
S	243	A243V	gCt	gTt	2	2	D.2	0.00015
S	243	A243T	Gct	Act	2	2	P.1	0.000032
S	243	A243G	gCt	gGt	2	2	P.1	0.000032
S	243	A243del	GCT	---	2	2	P.1.12	0.000968
S	243	A243A	gcT	gcG	1	2	P.1.14	0.000048
S	243	A243A	gcT	gcC	1	2	P.1.14	0.000048
S	243	A243del	GCT	---	2	2	P.1.16	0.000748
S	243	A243del	GCT	---	2	2	P.1.6	0.003891
S	243	A243S	Gct	Tct	2	2	P.1.7	0.000639
S	243	A243A	gcT	gcA	2	2	P.4	0.007605
S	243	A243del	GCT	---	2	2	Q.4	0.00091
S	243	A243S	Gct	Tct	1	1		0.055556
S	243	A243F	GCt	TTt	1	1		0.055556
S	243	A243V	gCt	gTt	1	1		0.055556
S	243	A243S	Gct	Tct	1	1	A	0.000387
S	243	A243V	gCt	gTt	1	1	A.1	0.000282
S	243	A243del	GCT	---	1	1	A.2.5	0.000499
S	243	A243del	GCT	---	1	1	A.23	0.010526
S	243	A243del	GCT	---	1	1	A.23.1	0.000704
S	243	A243del	GCT	---	1	1	A.27	0.001656
S	243	A243del	GCT	---	1	1	A.29	0.005319
S	243	A243S	Gct	Tct	1	1	A.29	0.005319
S	243	A243del	GCT	---	1	1	A.3	0.002096
S	243	A243del	GCT	---	1	1	AA.1	0.007246
S	243	A243del	GCT	---	1	1	AD.2	0.000219
S	243	A243S	Gct	Tct	1	1	AD.2	0.000219
S	243	A243V	gCt	gTt	1	1	AL.1	0.012987
S	243	A243F	GCt	TTt	1	1	All	0
S	243	A243C	GCt	TGt	1	1	All	0
S	243	A243H	GCt	CAt	1	1	All	0
S	243	A243L	GCT	TTA	1	1	All	0
S	243	A243R	GCT	AGA	1	1	All	0
S	243	A243del	GCT	---	1	1	AU.3	0.00211
S	243	A243V	gCt	gTt	1	1	AY.100	0.000046
S	243	A243A	gcT	gcC	1	1	AY.100	0.000046
S	243	A243T	Gct	Act	1	1	AY.102	0.000027
S	243	A243A	gcT	gcC	1	1	AY.102	0.000027
S	243	A243P	Gct	Cct	1	1	AY.103	0.000006
S	243	A243S	Gct	Tct	1	1	AY.109	0.00074
S	243	A243del	GCT	---	1	1	AY.111	0.000183
S	243	A243del	GCT	---	1	1	AY.116	0.000287
S	243	A243A	gcT	gcC	1	1	AY.116	0.000287
S	243	A243S	Gct	Tct	1	1	AY.117	0.000085
S	243	A243V	gCt	gTt	1	1	AY.117	0.000085
S	243	A243A	gcT	gcC	1	1	AY.118	0.000063
S	243	A243del2	GCT	--N	1	1	AY.120	0.000037
S	243	A243del	GCT	---	1	1	AY.120.2	0.001285
S	243	A243del	GCT	---	1	1	AY.121	0.000135
S	243	A243A	gcT	gcC	1	1	AY.13	0.000161
S	243	A243V	gCt	gTt	1	1	AY.13	0.000161
S	243	A243V	gCt	gTt	1	1	AY.16	0.00038
S	243	A243del	GCT	---	1	1	AY.16	0.00038
S	243	A243S	Gct	Tct	1	1	AY.16	0.00038
S	243	A243S	Gct	Tct	1	1	AY.17	0.008197
S	243	A243del	GCT	---	1	1	AY.2	0.000356
S	243	A243A	gcT	gcG	1	1	AY.20	0.000039
S	243	A243del1	Gct	-ct	1	1	AY.23	0.00007
S	243	A243A	gcT	gcC	1	1	AY.23.1	0.000417
S	243	A243T	Gct	Act	1	1	AY.23.1	0.000417
S	243	A243del2	gCT	g--	1	1	AY.25	0.000006
S	243	A243T	Gct	Act	1	1	AY.25	0.000006
S	243	A243A	gcT	gcC	1	1	AY.26	0.000028
S	243	A243A	gcT	gcC	1	1	AY.27	0.000065
S	243	A243del	GCT	---	1	1	AY.29.1	0.000221
S	243	A243del1	Gct	-ct	1	1	AY.3	0.00001
S	243	A243V	gCt	gTt	1	1	AY.3.1	0.000085
S	243	A243P	Gct	Cct	1	1	AY.3.1	0.000085
S	243	A243V	gCt	gTt	1	1	AY.33	0.000067
S	243	A243A	gcT	gcC	1	1	AY.34	0.000097
S	243	A243del	GCT	---	1	1	AY.35	0.000233
S	243	A243S	Gct	Tct	1	1	AY.36	0.000148
S	243	A243S	Gct	Tct	1	1	AY.37	0.000316
S	243	A243S	Gct	Tct	1	1	AY.38	0.000499
S	243	A243G	gCt	gGt	1	1	AY.39	0.000025
S	243	A243del	GCT	---	1	1	AY.39.1	0.00004
S	243	A243D	gCt	gAt	1	1	AY.4	0.000002
S	243	A243S	Gct	Tct	1	1	AY.4.2	0.000022
S	243	A243A	gcT	gcC	1	1	AY.4.2	0.000022
S	243	A243del	GCT	---	1	1	AY.4.2.1	0.000149
S	243	A243V	gCt	gTt	1	1	AY.4.2.1	0.000149
S	243	A243S	Gct	Tct	1	1	AY.4.2.1	0.000149
S	243	A243P	Gct	Cct	1	1	AY.4.4	0.000409
S	243	A243A	gcT	gcG	1	1	AY.4.5	0.000107
S	243	A243del	GCT	---	1	1	AY.40	0.000964
S	243	A243V	gCt	gTt	1	1	AY.42	0.00004
S	243	A243T	Gct	Act	1	1	AY.43	0.000004
S	243	A243L	GCT	TTA	1	1	AY.43	0.000004
S	243	A243P	Gct	Cct	1	1	AY.44	0.000006
S	243	A243D	gCt	gAt	1	1	AY.44	0.000006
S	243	A243V	gCt	gTt	1	1	AY.46	0.000104
S	243	A243S	Gct	Tct	1	1	AY.46.1	0.001027
S	243	A243del	GCT	---	1	1	AY.46.1	0.001027
S	243	A243S	Gct	Tct	1	1	AY.46.5	0.000198
S	243	A243T	Gct	Act	1	1	AY.47	0.000031
S	243	A243A	gcT	gcG	1	1	AY.47	0.000031
S	243	A243S	Gct	Tct	1	1	AY.47	0.000031
S	243	A243V	gCt	gTt	1	1	AY.5	0.000021
S	243	A243G	gCt	gGt	1	1	AY.5	0.000021
S	243	A243P	Gct	Cct	1	1	AY.5	0.000021
S	243	A243del	GCT	---	1	1	AY.50	0.000799
S	243	A243del	GCT	---	1	1	AY.51	0.000909
S	243	A243S	Gct	Tct	1	1	AY.54	0.000095
S	243	A243A	gcT	gcC	1	1	AY.55	0.000917
S	243	A243del	GCT	---	1	1	AY.58	0.000907
S	243	A243V	gCt	gTt	1	1	AY.59	0.00053
S	243	A243del	GCT	---	1	1	AY.59	0.00053
S	243	A243T	Gct	Act	1	1	AY.59	0.00053
S	243	A243S	Gct	Tct	1	1	AY.61	0.000105
S	243	A243del	GCT	---	1	1	AY.64	0.000595
S	243	A243del	GCT	---	1	1	AY.67	0.000464
S	243	A243T	Gct	Act	1	1	AY.67	0.000464
S	243	A243S	Gct	Tct	1	1	AY.67	0.000464
S	243	A243V	gCt	gTt	1	1	AY.7.1	0.000113
S	243	A243del	GCT	---	1	1	AY.7.2	0.000559
S	243	A243T	Gct	Act	1	1	AY.7.2	0.000559
S	243	A243T	Gct	Act	1	1	AY.73	0.000665
S	243	A243del	GCT	---	1	1	AY.73	0.000665
S	243	A243S	Gct	Tct	1	1	AY.74	0.000116
S	243	A243T	Gct	Act	1	1	AY.75	0.000056
S	243	A243V	gCt	gTt	1	1	AY.75	0.000056
S	243	A243S	Gct	Tct	1	1	AY.77	0.001127
S	243	A243del	GCT	---	1	1	AY.78	0.001541
S	243	A243del	GCT	---	1	1	AY.82	0.001357
S	243	A243del	GCT	---	1	1	AY.84	0.000437
S	243	A243S	Gct	Tct	1	1	AY.86	0.00083
S	243	A243del	GCT	---	1	1	AY.88	0.000884
S	243	A243del	GCT	---	1	1	AY.89	0.004902
S	243	A243del2	GCt	--t	1	1	AY.9	0.000068
S	243	A243S	Gct	Tct	1	1	AY.9.2	0.000037
S	243	A243V	gCt	gTt	1	1	AY.9.2	0.000037
S	243	A243S	Gct	Tct	1	1	AY.9.2.1	0.001976
S	243	A243del	GCT	---	1	1	AY.90	0.000684
S	243	A243del	GCT	---	1	1	AY.91	0.00073
S	243	A243del	GCT	---	1	1	AY.92	0.000287
S	243	A243S	Gct	Tct	1	1	AY.92	0.000287
S	243	A243V	gCt	gTt	1	1	AY.98	0.000079
S	243	A243S	Gct	Tct	1	1	AY.99.2	0.000092
S	243	A243V	gCt	gTt	1	1	AZ.2	0.000821
S	243	A243del1	Gct	-ct	1	1	B	0.000128
S	243	A243A	gcT	gcC	1	1	B	0.000128
S	243	A243D	gCt	gAt	1	1	B.1	0.000009
S	243	A243H	GCt	CAt	1	1	B.1	0.000009
S	243	A243C	GCt	TGt	1	1	B.1.1	0.000018
S	243	A243del1	Gct	-ct	1	1	B.1.1	0.000018
S	243	A243P	Gct	Cct	1	1	B.1.1	0.000018
S	243	A243T	Gct	Act	1	1	B.1.1	0.000018
S	243	A243del2	GCt	--t	1	1	B.1.1	0.000018
S	243	A243G	gCt	gGt	1	1	B.1.1	0.000018
S	243	A243del	GCT	---	1	1	B.1.1.1	0.000327
S	243	A243T	Gct	Act	1	1	B.1.1.1	0.000327
S	243	A243S	Gct	Tct	1	1	B.1.1.1	0.000327
S	243	A243del	GCT	---	1	1	B.1.1.153	0.001095
S	243	A243del	GCT	---	1	1	B.1.1.159	0.004673
S	243	A243T	Gct	Act	1	1	B.1.1.161	0.003534
S	243	A243del	GCT	---	1	1	B.1.1.165	0.015385
S	243	A243del	GCT	---	1	1	B.1.1.192	0.002309
S	243	A243A	gcT	gcC	1	1	B.1.1.198	0.001468
S	243	A243V	gCt	gTt	1	1	B.1.1.214	0.000055
S	243	A243T	Gct	Act	1	1	B.1.1.214	0.000055
S	243	A243S	Gct	Tct	1	1	B.1.1.214	0.000055
S	243	A243V	gCt	gTt	1	1	B.1.1.216	0.00089
S	243	A243del	GCT	---	1	1	B.1.1.217	0.003636
S	243	A243S	Gct	Tct	1	1	B.1.1.228	0.003049
S	243	A243S	Gct	Tct	1	1	B.1.1.269	0.001353
S	243	A243del	GCT	---	1	1	B.1.1.277	0.000759
S	243	A243del	GCT	---	1	1	B.1.1.280	0.003086
S	243	A243del	GCT	---	1	1	B.1.1.284	0.000107
S	243	A243del	GCT	---	1	1	B.1.1.298	0.000862
S	243	A243S	Gct	Tct	1	1	B.1.1.305	0.003861
S	243	A243V	gCt	gTt	1	1	B.1.1.306	0.000438
S	243	A243del	GCT	---	1	1	B.1.1.306	0.000438
S	243	A243del	GCT	---	1	1	B.1.1.311	0.000358
S	243	A243V	gCt	gTt	1	1	B.1.1.316	0.000925
S	243	A243S	Gct	Tct	1	1	B.1.1.317	0.000412
S	243	A243del	GCT	---	1	1	B.1.1.322	0.008772
S	243	A243del	GCT	---	1	1	B.1.1.323	0.014085
S	243	A243del	GCT	---	1	1	B.1.1.33	0.000421
S	243	A243S	Gct	Tct	1	1	B.1.1.348	0.000796
S	243	A243del	GCT	---	1	1	B.1.1.352	0.03125
S	243	A243del	GCT	---	1	1	B.1.1.356	0.008547
S	243	A243del	GCT	---	1	1	B.1.1.369	0.000446
S	243	A243del2	GCT	--N	1	1	B.1.1.369	0.000446
S	243	A243del	GCT	---	1	1	B.1.1.37	0.000193
S	243	A243del2	GCT	--N	1	1	B.1.1.37	0.000193
S	243	A243del	GCT	---	1	1	B.1.1.372	0.000689
S	243	A243del	GCT	---	1	1	B.1.1.374	0.002375
S	243	A243del2	GCt	--t	1	1	B.1.1.374	0.002375
S	243	A243V	gCt	gTt	1	1	B.1.1.39	0.00051
S	243	A243del	GCT	---	1	1	B.1.1.402	0.011111
S	243	A243del	GCT	---	1	1	B.1.1.409	0.002833
S	243	A243V	gCt	gTt	1	1	B.1.1.420	0.001006
S	243	A243del	GCT	---	1	1	B.1.1.420	0.001006
S	243	A243S	Gct	Tct	1	1	B.1.1.427	0.142857
S	243	A243V	gCt	gTt	1	1	B.1.1.432	0.001266
S	243	A243del1	Gct	-ct	1	1	B.1.1.432	0.001266
S	243	A243S	Gct	Tct	1	1	B.1.1.434	0.000349
S	243	A243A	gcT	gcC	1	1	B.1.1.434	0.000349
S	243	A243del	GCT	---	1	1	B.1.1.44	0.00241
S	243	A243del	GCT	---	1	1	B.1.1.448	0.002033
S	243	A243del	GCT	---	1	1	B.1.1.464	0.001473
S	243	A243A	gcT	gcC	1	1	B.1.1.486	0.001577
S	243	A243del	GCT	---	1	1	B.1.1.486	0.001577
S	243	A243V	gCt	gTt	1	1	B.1.1.50	0.000679
S	243	A243P	Gct	Cct	1	1	B.1.1.519	0.00004
S	243	A243D	gCt	gAt	1	1	B.1.1.519	0.00004
S	243	A243S	Gct	Tct	1	1	B.1.1.525	0.005464
S	243	A243del	GCT	---	1	1	B.1.1.526	0.003546
S	243	A243del	GCT	---	1	1	B.1.1.53	0.013699
S	243	A243R	GCT	AGA	1	1	B.1.1.7	0.000001
S	243	A243T	Gct	Act	1	1	B.1.1.70	0.000341
S	243	A243S	Gct	Tct	1	1	B.1.1.89	0.006061
S	243	A243A	gcT	gcC	1	1	B.1.1.99	0.02381
S	243	A243del	GCT	---	1	1	B.1.110.3	0.000718
S	243	A243del	GCT	---	1	1	B.1.111	0.001175
S	243	A243S	Gct	Tct	1	1	B.1.111	0.001175
S	243	A243del	GCT	---	1	1	B.1.139	0.000733
S	243	A243del	GCT	---	1	1	B.1.147	0.000756
S	243	A243T	Gct	Act	1	1	B.1.160	0.000031
S	243	A243del1	Gct	-ct	1	1	B.1.160	0.000031
S	243	A243del	GCT	---	1	1	B.1.160.29	0.004219
S	243	A243del	GCT	---	1	1	B.1.160.7	0.002079
S	243	A243V	gCt	gTt	1	1	B.1.166	0.008475
S	243	A243P	Gct	Cct	1	1	B.1.177	0.000013
S	243	A243S	Gct	Tct	1	1	B.1.177.10	0.000878
S	243	A243V	gCt	gTt	1	1	B.1.177.15	0.000631
S	243	A243del	GCT	---	1	1	B.1.177.17	0.000821
S	243	A243del	GCT	---	1	1	B.1.177.18	0.00116
S	243	A243A	gcT	gcC	1	1	B.1.177.21	0.000076
S	243	A243del	GCT	---	1	1	B.1.177.21	0.000076
S	243	A243del	GCT	---	1	1	B.1.177.24	0.001295
S	243	A243V	gCt	gTt	1	1	B.1.177.35	0.000691
S	243	A243del	GCT	---	1	1	B.1.177.4	0.000211
S	243	A243S	Gct	Tct	1	1	B.1.177.44	0.000519
S	243	A243del	GCT	---	1	1	B.1.177.51	0.004566
S	243	A243P	Gct	Cct	1	1	B.1.177.52	0.001757
S	243	A243A	gcT	gcC	1	1	B.1.177.57	0.000281
S	243	A243S	Gct	Tct	1	1	B.1.177.60	0.000218
S	243	A243del2	GCT	--N	1	1	B.1.177.62	0.001192
S	243	A243S	Gct	Tct	1	1	B.1.177.66	0.041667
S	243	A243del	GCT	---	1	1	B.1.177.69	0.001484
S	243	A243del	GCT	---	1	1	B.1.177.77	0.000726
S	243	A243S	Gct	Tct	1	1	B.1.177.82	0.000477
S	243	A243del	GCT	---	1	1	B.1.177.82	0.000477
S	243	A243del	GCT	---	1	1	B.1.177.85	0.005435
S	243	A243V	gCt	gTt	1	1	B.1.182	0.007246
S	243	A243S	Gct	Tct	1	1	B.1.206	0.000816
S	243	A243del	GCT	---	1	1	B.1.213	0.014925
S	243	A243S	Gct	Tct	1	1	B.1.214.3	0.007143
S	243	A243del	GCT	---	1	1	B.1.22	0.001318
S	243	A243del	GCT	---	1	1	B.1.220	0.01087
S	243	A243S	Gct	Tct	1	1	B.1.23	0.006061
S	243	A243V	gCt	gTt	1	1	B.1.232	0.000537
S	243	A243V	gCt	gTt	1	1	B.1.234	0.000132
S	243	A243A	gcT	gcC	1	1	B.1.234	0.000132
S	243	A243del	GCT	---	1	1	B.1.234	0.000132
S	243	A243S	Gct	Tct	1	1	B.1.234	0.000132
S	243	A243del	GCT	---	1	1	B.1.237	0.004975
S	243	A243del	GCT	---	1	1	B.1.241	0.000812
S	243	A243P	Gct	Cct	1	1	B.1.258	0.000067
S	243	A243S	Gct	Tct	1	1	B.1.258.17	0.000104
S	243	A243del	GCT	---	1	1	B.1.258.3	0.001675
S	243	A243D	gCt	gAt	1	1	B.1.319	0.003049
S	243	A243V	gCt	gTt	1	1	B.1.320	0.001245
S	243	A243V	gCt	gTt	1	1	B.1.325	0.006897
S	243	A243P	Gct	Cct	1	1	B.1.351	0.00003
S	243	A243del1	Gct	-ct	1	1	B.1.351.3	0.000876
S	243	A243V	gCt	gTt	1	1	B.1.36.1	0.00114
S	243	A243V	gCt	gTt	1	1	B.1.36.17	0.000494
S	243	A243del	GCT	---	1	1	B.1.36.17	0.000494
S	243	A243P	Gct	Cct	1	1	B.1.36.17	0.000494
S	243	A243del	GCT	---	1	1	B.1.36.20	0.016949
S	243	A243S	Gct	Tct	1	1	B.1.36.22	0.001208
S	243	A243S	Gct	Tct	1	1	B.1.36.26	0.002857
S	243	A243del	GCT	---	1	1	B.1.36.37	0.002778
S	243	A243S	Gct	Tct	1	1	B.1.366	0.004878
S	243	A243S	Gct	Tct	1	1	B.1.367	0.000792
S	243	A243del	GCT	---	1	1	B.1.367	0.000792
S	243	A243V	gCt	gTt	1	1	B.1.369	0.000285
S	243	A243del	GCT	---	1	1	B.1.375	0.00082
S	243	A243del	GCT	---	1	1	B.1.389	0.001002
S	243	A243del	GCT	---	1	1	B.1.399	0.001934
S	243	A243del1	Gct	-ct	1	1	B.1.400	0.000429
S	243	A243del	GCT	---	1	1	B.1.416.1	0.001563
S	243	A243del	GCT	---	1	1	B.1.417	0.028571
S	243	A243del	GCT	---	1	1	B.1.424	0.008065
S	243	A243V	gCt	gTt	1	1	B.1.427	0.00005
S	243	A243T	Gct	Act	1	1	B.1.429	0.000024
S	243	A243del	GCT	---	1	1	B.1.433	0.003195
S	243	A243S	Gct	Tct	1	1	B.1.436	0.001029
S	243	A243V	gCt	gTt	1	1	B.1.438.1	0.000107
S	243	A243del	GCT	---	1	1	B.1.438.1	0.000107
S	243	A243del	GCT	---	1	1	B.1.439	0.005917
S	243	A243del	GCT	---	1	1	B.1.441	0.009615
S	243	A243del	GCT	---	1	1	B.1.445	0.011765
S	243	A243del	GCT	---	1	1	B.1.453	0.003236
S	243	A243S	Gct	Tct	1	1	B.1.459	0.004082
S	243	A243T	Gct	Act	1	1	B.1.465	0.003802
S	243	A243del	GCT	---	1	1	B.1.466.2	0.000391
S	243	A243del	GCT	---	1	1	B.1.468	0.005714
S	243	A243del	GCT	---	1	1	B.1.470	0.001404
S	243	A243S	Gct	Tct	1	1	B.1.497	0.000315
S	243	A243del	GCT	---	1	1	B.1.497	0.000315
S	243	A243V	gCt	gTt	1	1	B.1.497	0.000315
S	243	A243S	Gct	Tct	1	1	B.1.499	0.00105
S	243	A243del	GCT	---	1	1	B.1.499	0.00105
S	243	A243V	gCt	gTt	1	1	B.1.505	0.004386
S	243	A243S	Gct	Tct	1	1	B.1.517	0.000427
S	243	A243A	gcT	gcC	1	1	B.1.526	0.000024
S	243	A243V	gCt	gTt	1	1	B.1.538	0.008065
S	243	A243S	Gct	Tct	1	1	B.1.541	0.004425
S	243	A243del	GCT	---	1	1	B.1.551	0.00129
S	243	A243del	GCT	---	1	1	B.1.561	0.000397
S	243	A243S	Gct	Tct	1	1	B.1.574	0.002151
S	243	A243del	GCT	---	1	1	B.1.582	0.000491
S	243	A243V	gCt	gTt	1	1	B.1.588	0.00091
S	243	A243del	GCT	---	1	1	B.1.589	0.007576
S	243	A243V	gCt	gTt	1	1	B.1.590	0.004545
S	243	A243V	gCt	gTt	1	1	B.1.595	0.000261
S	243	A243S	Gct	Tct	1	1	B.1.595	0.000261
S	243	A243A	gcT	gcC	1	1	B.1.596	0.000087
S	243	A243T	Gct	Act	1	1	B.1.596	0.000087
S	243	A243del1	gcT	gc-	1	1	B.1.596	0.000087
S	243	A243del	GCT	---	1	1	B.1.596.1	0.009346
S	243	A243S	Gct	Tct	1	1	B.1.597	0.00463
S	243	A243del	GCT	---	1	1	B.1.604	0.017241
S	243	A243del	GCT	---	1	1	B.1.606	0.006024
S	243	A243T	Gct	Act	1	1	B.1.617.1	0.000129
S	243	A243del1	gcT	gc-	1	1	B.1.617.1	0.000129
S	243	A243del1	Gct	-ct	1	1	B.1.617.2	0.000004
S	243	A243T	Gct	Act	1	1	B.1.617.2	0.000004
S	243	A243A	gcT	gcC	1	1	B.1.621	0.000089
S	243	A243S	Gct	Tct	1	1	B.1.621	0.000089
S	243	A243del	GCT	---	1	1	B.1.621.1	0.000506
S	243	A243V	gCt	gTt	1	1	B.1.625	0.002353
S	243	A243S	Gct	Tct	1	1	B.1.625	0.002353
S	243	A243del2	GCt	--t	1	1	B.1.630	0.005236
S	243	A243S	Gct	Tct	1	1	B.1.632	0.006711
S	243	A243D	gCt	gAt	1	1	B.1.637	0.000073
S	243	A243V	gCt	gTt	1	1	B.1.637	0.000073
S	243	A243del	GCT	---	1	1	B.1.8	0.001972
S	243	A243P	Gct	Cct	1	1	B.40	0.000364
S	243	A243del	GCT	---	1	1	B.40	0.000364
S	243	A243V	gCt	gTt	1	1	B.46	0.020833
S	243	A243del	GCT	---	1	1	B.6	0.00091
S	243	A243del1	Gct	-ct	1	1	B.6	0.00091
S	243	A243S	Gct	Tct	1	1	C.1	0.002392
S	243	A243del	GCT	---	1	1	C.1	0.002392
S	243	A243del	GCT	---	1	1	C.1.1	0.076923
S	243	A243V	gCt	gTt	1	1	C.14	0.004329
S	243	A243S	Gct	Tct	1	1	C.16	0.00106
S	243	A243S	Gct	Tct	1	1	C.26	0.007353
S	243	A243del	GCT	---	1	1	C.35	0.000774
S	243	A243del	GCT	---	1	1	C.36	0.000911
S	243	A243D	gCt	gAt	1	1	C.37	0.000116
S	243	A243V	gCt	gTt	1	1	C.37.1	0.002618
S	243	A243S	Gct	Tct	1	1	C.8	0.004464
S	243	A243G	gCt	gGt	1	1	D.2	0.000075
S	243	A243S	Gct	Tct	1	1	D.2	0.000075
S	243	A243V	gCt	gTt	1	1	N.4	0.004255
S	243	A243del	GCT	---	1	1	N.5	0.001767
S	243	A243P	Gct	Cct	1	1	P.1	0.000016
S	243	A243V	gCt	gTt	1	1	P.1.10	0.000269
S	243	A243G	gCt	gGt	1	1	P.1.17	0.000162
S	243	A243S	Gct	Tct	1	1	P.1.17	0.000162
S	243	A243S	Gct	Tct	1	1	P.1.17.1	0.000875
S	243	A243del	GCT	---	1	1	P.1.2	0.001156
S	243	A243V	gCt	gTt	1	1	P.1.7	0.000319
S	243	A243D	gCt	gAt	1	1	P.2	0.000187
S	243	A243del	GCT	---	1	1	P.2	0.000187
S	243	A243S	Gct	Tct	1	1	P.2	0.000187
S	243	A243S	Gct	Tct	1	1	P.4	0.003802
S	243	A243V	gCt	gTt	1	1	Q.3	0.000145
S	243	A243V	gCt	gTt	1	1	Q.7	0.001111
S	243	A243del	GCT	---	1	1	Q.7	0.001111
S	243	A243S	Gct	Tct	1	1	Q.7	0.001111
S	243	A243S	Gct	Tct	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.