CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 242 | L242del | del | CTT | --- | 39205 | 39205 | 1 | 22286-22288 | |
S | 242 | L242F | nonsyn | Ctt | Ttt | 909 | 908 | 0.9989 | 22286-22288 | |
S | 242 | L242F | nonsyn | CtT | TtC | 909 | 1 | 0.00110011 | 22286-22288 | |
S | 242 | L242L | syn | ctT | ctC | 405 | 292 | 0.720988 | 22286-22288 | |
S | 242 | L242L | syn | ctT | ctA | 405 | 94 | 0.232099 | 22286-22288 | |
S | 242 | L242L | syn | ctT | ctG | 405 | 19 | 0.0469136 | 22286-22288 | |
S | 242 | L242P | nonsyn | cTt | cCt | 333 | 332 | 0.996997 | 22286-22288 | |
S | 242 | L242P | nonsyn | cTT | cCC | 333 | 1 | 0.003003 | 22286-22288 | |
S | 242 | L242H | nonsyn | cTt | cAt | 158 | 158 | 1 | 22286-22288 | |
S | 242 | L242I | nonsyn | Ctt | Att | 129 | 129 | 1 | 22286-22288 | |
S | 242 | L242Q | nonsyn | cTT | cAA | 40 | 40 | 1 | 22286-22288 | |
S | 242 | L242del2 | del | cTT | c-- | 34 | 22 | 0.647059 | 22286-22288 | |
S | 242 | L242del2 | del | CTT | --N | 34 | 10 | 0.294118 | 22286-22288 | |
S | 242 | L242del2 | del | CTt | --t | 34 | 2 | 0.0588235 | 22286-22288 | |
S | 242 | L242del1 | del | cTT | c-N | 32 | 10 | 0.3125 | 22286-22288 | |
S | 242 | L242del1 | del | ctT | ct- | 32 | 9 | 0.28125 | 22286-22288 | |
S | 242 | L242del1 | del | Ctt | -tt | 32 | 8 | 0.25 | 22286-22288 | |
S | 242 | L242del1 | del | cTt | c-t | 32 | 4 | 0.125 | 22286-22288 | |
S | 242 | L242del1 | del | CtT | Nt- | 32 | 1 | 0.03125 | 22286-22288 | |
S | 242 | L242R | nonsyn | cTt | cGt | 16 | 15 | 0.9375 | 22286-22288 | |
S | 242 | L242R | nonsyn | CTT | AGA | 16 | 1 | 0.0625 | 22286-22288 | |
S | 242 | L242V | nonsyn | Ctt | Gtt | 14 | 13 | 0.928571 | 22286-22288 | |
S | 242 | L242V | nonsyn | CtT | GtC | 14 | 1 | 0.0714286 | 22286-22288 | |
S | 242 | L242S | nonsyn | CTt | TCt | 6 | 5 | 0.833333 | 22286-22288 | |
S | 242 | L242S | nonsyn | CTT | TCC | 6 | 1 | 0.166667 | 22286-22288 | |
S | 242 | L242T | nonsyn | CTt | ACt | 2 | 2 | 1 | 22286-22288 | |
S | 242 | L242A | nonsyn | CTt | GCt | 2 | 1 | 0.5 | 22286-22288 | |
S | 242 | L242A | nonsyn | CTT | GCC | 2 | 1 | 0.5 | 22286-22288 | |
S | 242 | L242N | nonsyn | CTt | AAt | 1 | 1 | 1 | 22286-22288 | |
S | 242 | L242C | nonsyn | CTt | TGt | 1 | 1 | 1 | 22286-22288 | |
S | 242 | L242Y | nonsyn | CTt | TAt | 1 | 1 | 1 | 22286-22288 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 242 | L242del | CTT | --- | 39205 | 39205 | All | 0.007498 |
S | 242 | L242del | CTT | --- | 30216 | 30216 | B.1.351 | 0.898216 |
S | 242 | L242del | CTT | --- | 3136 | 3136 | B.1.351.2 | 0.948865 |
S | 242 | L242del | CTT | --- | 1390 | 1390 | B.1.351.5 | 0.833333 |
S | 242 | L242del | CTT | --- | 1035 | 1035 | B.1.351.3 | 0.907099 |
S | 242 | L242del | CTT | --- | 1012 | 1012 | B.1.620 | 0.957427 |
S | 242 | L242F | Ctt | Ttt | 908 | 909 | All | 0.000174 |
S | 242 | L242F | CtT | TtC | 1 | 909 | All | 0 |
S | 242 | L242del | CTT | --- | 649 | 649 | AY.4 | 0.00101 |
S | 242 | L242L | ctT | ctC | 292 | 405 | All | 0.000056 |
S | 242 | L242L | ctT | ctA | 94 | 405 | All | 0.000018 |
S | 242 | L242L | ctT | ctG | 19 | 405 | All | 0.000004 |
S | 242 | L242del | CTT | --- | 371 | 371 | B.1.1.7 | 0.000332 |
S | 242 | L242P | cTt | cCt | 332 | 333 | All | 0.000063 |
S | 242 | L242P | cTT | cCC | 1 | 333 | All | 0 |
S | 242 | L242del | CTT | --- | 307 | 307 | B.1 | 0.002812 |
S | 242 | L242H | cTt | cAt | 158 | 158 | All | 0.00003 |
S | 242 | L242F | Ctt | Ttt | 137 | 137 | AY.121 | 0.018539 |
S | 242 | L242F | Ctt | Ttt | 132 | 132 | B.1.1.7 | 0.000118 |
S | 242 | L242I | Ctt | Att | 129 | 129 | All | 0.000025 |
S | 242 | L242L | ctT | ctC | 126 | 126 | AY.42 | 0.005069 |
S | 242 | L242del | CTT | --- | 126 | 126 | B.1.415.1 | 0.954545 |
S | 242 | L242P | cTt | cCt | 112 | 112 | B.1.351.5 | 0.067146 |
S | 242 | L242H | cTt | cAt | 101 | 101 | B.1.351 | 0.003002 |
S | 242 | L242F | Ctt | Ttt | 95 | 95 | B.1.617.2 | 0.000358 |
S | 242 | L242P | cTt | cCt | 82 | 82 | B.1.1 | 0.001488 |
S | 242 | L242F | Ctt | Ttt | 77 | 77 | P.1 | 0.001213 |
S | 242 | L242F | Ctt | Ttt | 66 | 66 | AY.92 | 0.01896 |
S | 242 | L242P | cTt | cCt | 60 | 60 | B.1.351 | 0.001784 |
S | 242 | L242L | ctT | ctA | 29 | 55 | B.1.1.7 | 0.000026 |
S | 242 | L242L | ctT | ctC | 25 | 55 | B.1.1.7 | 0.000022 |
S | 242 | L242L | ctT | ctG | 1 | 55 | B.1.1.7 | 0.000001 |
S | 242 | L242del | CTT | --- | 55 | 55 | B.1.617.2 | 0.000207 |
S | 242 | L242del | CTT | --- | 48 | 48 | B.1.1 | 0.000871 |
S | 242 | L242I | Ctt | Att | 43 | 43 | B.1.177.21 | 0.003288 |
S | 242 | L242del | CTT | --- | 41 | 41 | AY.25 | 0.000247 |
S | 242 | L242L | ctT | ctA | 41 | 41 | B.1.547 | 1 |
S | 242 | L242Q | cTT | cAA | 40 | 40 | All | 0.000008 |
S | 242 | L242del | CTT | --- | 40 | 40 | AY.103 | 0.000248 |
S | 242 | L242del | CTT | --- | 40 | 40 | AY.43 | 0.000177 |
S | 242 | L242F | Ctt | Ttt | 37 | 37 | C.37 | 0.004294 |
S | 242 | L242del | CTT | --- | 36 | 36 | AY.44 | 0.000219 |
S | 242 | L242del2 | cTT | c-- | 22 | 34 | All | 0.000004 |
S | 242 | L242del2 | CTT | --N | 10 | 34 | All | 0.000002 |
S | 242 | L242del2 | CTt | --t | 2 | 34 | All | 0 |
S | 242 | L242F | Ctt | Ttt | 33 | 33 | B.1.2 | 0.000291 |
S | 242 | L242del1 | cTT | c-N | 10 | 32 | All | 0.000002 |
S | 242 | L242del1 | ctT | ct- | 9 | 32 | All | 0.000002 |
S | 242 | L242del1 | Ctt | -tt | 8 | 32 | All | 0.000002 |
S | 242 | L242del1 | cTt | c-t | 4 | 32 | All | 0.000001 |
S | 242 | L242del1 | CtT | Nt- | 1 | 32 | All | 0 |
S | 242 | L242del | CTT | --- | 31 | 31 | B.1.2 | 0.000273 |
S | 242 | L242Q | cTT | cAA | 31 | 31 | B.1.351 | 0.000922 |
S | 242 | L242F | Ctt | Ttt | 29 | 29 | AY.4 | 0.000045 |
S | 242 | L242F | Ctt | Ttt | 27 | 27 | B.1.177 | 0.000356 |
S | 242 | L242del | CTT | --- | 26 | 26 | AY.3 | 0.000259 |
S | 242 | L242del | CTT | --- | 26 | 26 | B.1.160 | 0.000811 |
S | 242 | L242H | cTt | cAt | 26 | 26 | B.1.351.5 | 0.015588 |
S | 242 | L242F | Ctt | Ttt | 26 | 26 | B.1.470 | 0.036517 |
S | 242 | L242F | Ctt | Ttt | 25 | 25 | AY.25 | 0.00015 |
S | 242 | L242L | ctT | ctC | 25 | 25 | AY.7.1 | 0.002818 |
S | 242 | L242del | CTT | --- | 25 | 25 | B.1.177 | 0.000329 |
S | 242 | L242I | Ctt | Att | 24 | 24 | B.1.1.7 | 0.000021 |
S | 242 | L242del | CTT | --- | 24 | 24 | B.1.526 | 0.000564 |
S | 242 | L242P | cTt | cCt | 23 | 23 | B.1.351.2 | 0.006959 |
S | 242 | L242del | CTT | --- | 23 | 23 | P.1 | 0.000362 |
S | 242 | L242del | CTT | --- | 21 | 21 | B.1.429 | 0.000494 |
S | 242 | L242del | CTT | --- | 20 | 20 | AY.119 | 0.000706 |
S | 242 | L242P | cTt | cCt | 19 | 19 | B.1.1.7 | 0.000017 |
S | 242 | L242L | ctT | ctC | 19 | 19 | B.1.177 | 0.00025 |
S | 242 | L242del | CTT | --- | 19 | 19 | P.3 | 0.030303 |
S | 242 | L242F | Ctt | Ttt | 18 | 18 | B.1 | 0.000165 |
S | 242 | L242F | Ctt | Ttt | 17 | 17 | B.1.1.166 | 0.566667 |
S | 242 | L242del | CTT | --- | 17 | 17 | B.1.636 | 0.114094 |
S | 242 | L242R | cTt | cGt | 15 | 16 | All | 0.000003 |
S | 242 | L242R | CTT | AGA | 1 | 16 | All | 0 |
S | 242 | L242L | ctT | ctG | 16 | 16 | B.1.240 | 0.003449 |
S | 242 | L242del | CTT | --- | 16 | 16 | C.37 | 0.001857 |
S | 242 | L242V | Ctt | Gtt | 13 | 14 | All | 0.000002 |
S | 242 | L242V | CtT | GtC | 1 | 14 | All | 0 |
S | 242 | L242L | ctT | ctC | 11 | 14 | AY.25 | 0.000066 |
S | 242 | L242L | ctT | ctA | 3 | 14 | AY.25 | 0.000018 |
S | 242 | L242F | Ctt | Ttt | 14 | 14 | AY.44 | 0.000085 |
S | 242 | L242F | Ctt | Ttt | 13 | 13 | AY.103 | 0.000081 |
S | 242 | L242L | ctT | ctA | 9 | 13 | AY.44 | 0.000055 |
S | 242 | L242L | ctT | ctC | 4 | 13 | AY.44 | 0.000024 |
S | 242 | L242del | CTT | --- | 13 | 13 | B.1.221 | 0.000923 |
S | 242 | L242H | cTt | cAt | 13 | 13 | B.1.351.3 | 0.011394 |
S | 242 | L242L | ctT | ctC | 13 | 13 | B.1.517 | 0.005551 |
S | 242 | L242del | CTT | --- | 12 | 12 | B.1.177.7 | 0.001978 |
S | 242 | L242del1 | ctT | ct- | 4 | 12 | B.1.351.5 | 0.002398 |
S | 242 | L242del1 | Ctt | -tt | 4 | 12 | B.1.351.5 | 0.002398 |
S | 242 | L242del1 | cTT | c-N | 3 | 12 | B.1.351.5 | 0.001799 |
S | 242 | L242del1 | cTt | c-t | 1 | 12 | B.1.351.5 | 0.0006 |
S | 242 | L242del | CTT | --- | 11 | 11 | AY.26 | 0.000311 |
S | 242 | L242F | Ctt | Ttt | 11 | 11 | B.1.391 | 0.012401 |
S | 242 | L242L | ctT | ctC | 9 | 11 | B.1.617.2 | 0.000034 |
S | 242 | L242L | ctT | ctA | 2 | 11 | B.1.617.2 | 0.000008 |
S | 242 | L242F | Ctt | Ttt | 10 | 10 | AY.43 | 0.000044 |
S | 242 | L242del | CTT | --- | 10 | 10 | B.1.177.86 | 0.001835 |
S | 242 | L242del | CTT | --- | 10 | 10 | P.1.15 | 0.002323 |
S | 242 | L242del | CTT | --- | 9 | 9 | AY.102 | 0.000239 |
S | 242 | L242F | Ctt | Ttt | 9 | 9 | AY.102 | 0.000239 |
S | 242 | L242I | Ctt | Att | 9 | 9 | AY.120 | 0.000335 |
S | 242 | L242del | CTT | --- | 9 | 9 | AY.23 | 0.000628 |
S | 242 | L242del | CTT | --- | 9 | 9 | AY.4.2 | 0.000195 |
S | 242 | L242del | CTT | --- | 9 | 9 | B | 0.00115 |
S | 242 | L242L | ctT | ctC | 9 | 9 | B.1.258.17 | 0.000936 |
S | 242 | L242del2 | cTT | c-- | 7 | 9 | B.1.351 | 0.000208 |
S | 242 | L242del2 | CTT | --N | 2 | 9 | B.1.351 | 0.000059 |
S | 242 | L242del | CTT | --- | 9 | 9 | B.1.525 | 0.001018 |
S | 242 | L242del | CTT | --- | 9 | 9 | B.1.554 | 0.039648 |
S | 242 | L242F | Ctt | Ttt | 8 | 8 | AY.39 | 0.000198 |
S | 242 | L242del | CTT | --- | 8 | 8 | B.1.177.73 | 0.00453 |
S | 242 | L242del1 | cTT | c-N | 7 | 8 | B.1.351 | 0.000208 |
S | 242 | L242del1 | ctT | ct- | 1 | 8 | B.1.351 | 0.00003 |
S | 242 | L242H | cTt | cAt | 8 | 8 | B.1.351.2 | 0.002421 |
S | 242 | L242del | CTT | --- | 8 | 8 | B.1.595 | 0.002088 |
S | 242 | L242del2 | cTT | c-- | 7 | 7 | AY.29 | 0.00011 |
S | 242 | L242del | CTT | --- | 7 | 7 | AY.39 | 0.000173 |
S | 242 | L242del | CTT | --- | 7 | 7 | AY.5 | 0.000145 |
S | 242 | L242del | CTT | --- | 7 | 7 | AY.56 | 0.011236 |
S | 242 | L242del | CTT | --- | 7 | 7 | AY.75 | 0.000392 |
S | 242 | L242del | CTT | --- | 7 | 7 | AY.98.1 | 0.000339 |
S | 242 | L242L | ctT | ctC | 6 | 7 | B.1 | 0.000055 |
S | 242 | L242L | ctT | ctA | 1 | 7 | B.1 | 0.000009 |
S | 242 | L242del | CTT | --- | 7 | 7 | B.1.1.432 | 0.008861 |
S | 242 | L242F | Ctt | Ttt | 7 | 7 | B.1.1.519 | 0.000278 |
S | 242 | L242I | Ctt | Att | 7 | 7 | B.1.2 | 0.000062 |
S | 242 | L242Q | cTT | cAA | 7 | 7 | B.1.351.2 | 0.002118 |
S | 242 | L242del | CTT | --- | 7 | 7 | Q.1 | 0.000884 |
S | 242 | L242S | CTt | TCt | 5 | 6 | All | 0.000001 |
S | 242 | L242S | CTT | TCC | 1 | 6 | All | 0 |
S | 242 | L242F | Ctt | Ttt | 6 | 6 | AY.23 | 0.000418 |
S | 242 | L242del | CTT | --- | 6 | 6 | AY.33 | 0.000401 |
S | 242 | L242L | ctT | ctC | 5 | 6 | AY.4 | 0.000008 |
S | 242 | L242L | ctT | ctA | 1 | 6 | AY.4 | 0.000002 |
S | 242 | L242L | ctT | ctC | 5 | 5 | AY.29 | 0.000079 |
S | 242 | L242I | Ctt | Att | 5 | 5 | AY.4 | 0.000008 |
S | 242 | L242del | CTT | --- | 5 | 5 | AY.46.6 | 0.000361 |
S | 242 | L242del | CTT | --- | 5 | 5 | AY.75.1 | 0.000902 |
S | 242 | L242F | Ctt | Ttt | 5 | 5 | B.1.1 | 0.000091 |
S | 242 | L242del2 | cTT | c-- | 4 | 5 | B.1.1.7 | 0.000004 |
S | 242 | L242del2 | CTt | --t | 1 | 5 | B.1.1.7 | 0.000001 |
S | 242 | L242del2 | CTT | --N | 5 | 5 | B.1.351.3 | 0.004382 |
S | 242 | L242F | Ctt | Ttt | 4 | 4 | AY.100 | 0.000184 |
S | 242 | L242F | Ctt | Ttt | 4 | 4 | AY.110 | 0.000451 |
S | 242 | L242del | CTT | --- | 4 | 4 | AY.120 | 0.000149 |
S | 242 | L242del | CTT | --- | 4 | 4 | AY.14 | 0.000352 |
S | 242 | L242del | CTT | --- | 4 | 4 | AY.20 | 0.000155 |
S | 242 | L242I | Ctt | Att | 4 | 4 | AY.43 | 0.000018 |
S | 242 | L242F | Ctt | Ttt | 4 | 4 | AY.5 | 0.000083 |
S | 242 | L242I | Ctt | Att | 4 | 4 | AY.5 | 0.000083 |
S | 242 | L242P | cTt | cCt | 4 | 4 | B.1 | 0.000037 |
S | 242 | L242L | ctT | ctC | 4 | 4 | B.1.1 | 0.000073 |
S | 242 | L242del | CTT | --- | 4 | 4 | B.1.1.389 | 0.024242 |
S | 242 | L242P | cTt | cCt | 4 | 4 | B.1.177.10 | 0.003512 |
S | 242 | L242I | Ctt | Att | 4 | 4 | B.1.177.81 | 0.000757 |
S | 242 | L242del | CTT | --- | 4 | 4 | B.1.258 | 0.000266 |
S | 242 | L242P | cTt | cCt | 4 | 4 | B.1.351.3 | 0.003506 |
S | 242 | L242del | CTT | --- | 4 | 4 | B.1.609 | 0.001918 |
S | 242 | L242S | CTt | TCt | 4 | 4 | B.1.620 | 0.003784 |
S | 242 | L242del | CTT | --- | 4 | 4 | B.1.621 | 0.000354 |
S | 242 | L242I | Ctt | Att | 4 | 4 | P.1.8 | 0.019139 |
S | 242 | L242del | CTT | --- | 4 | 4 | P.5 | 0.054795 |
S | 242 | L242del | CTT | --- | 3 | 3 | AY.1 | 0.001187 |
S | 242 | L242del | CTT | --- | 3 | 3 | AY.100 | 0.000138 |
S | 242 | L242L | ctT | ctC | 3 | 3 | AY.103 | 0.000019 |
S | 242 | L242del | CTT | --- | 3 | 3 | AY.106 | 0.001005 |
S | 242 | L242del | CTT | --- | 3 | 3 | AY.116.1 | 0.000934 |
S | 242 | L242F | Ctt | Ttt | 3 | 3 | AY.20 | 0.000117 |
S | 242 | L242del | CTT | --- | 3 | 3 | AY.29 | 0.000047 |
S | 242 | L242del | CTT | --- | 3 | 3 | AY.36 | 0.000445 |
S | 242 | L242H | cTt | cAt | 3 | 3 | AY.4 | 0.000005 |
S | 242 | L242del | CTT | --- | 3 | 3 | AY.4.5 | 0.000322 |
S | 242 | L242del | CTT | --- | 3 | 3 | AY.42 | 0.000121 |
S | 242 | L242del | CTT | --- | 3 | 3 | AY.45 | 0.000365 |
S | 242 | L242F | Ctt | Ttt | 3 | 3 | AY.47 | 0.000093 |
S | 242 | L242del | CTT | --- | 3 | 3 | AY.47 | 0.000093 |
S | 242 | L242L | ctT | ctC | 3 | 3 | AY.78 | 0.004622 |
S | 242 | L242del | CTT | --- | 3 | 3 | B.1.1.519 | 0.000119 |
S | 242 | L242R | cTt | cGt | 2 | 3 | B.1.1.7 | 0.000002 |
S | 242 | L242R | CTT | AGA | 1 | 3 | B.1.1.7 | 0.000001 |
S | 242 | L242del | CTT | --- | 3 | 3 | B.1.170 | 0.012931 |
S | 242 | L242P | cTt | cCt | 3 | 3 | B.1.177 | 0.00004 |
S | 242 | L242del | CTT | --- | 3 | 3 | B.1.240 | 0.000647 |
S | 242 | L242del | CTT | --- | 3 | 3 | B.1.336 | 0.007317 |
S | 242 | L242L | ctT | ctC | 3 | 3 | B.1.36.9 | 0.009646 |
S | 242 | L242F | Ctt | Ttt | 3 | 3 | B.1.396 | 0.002117 |
S | 242 | L242del | CTT | --- | 3 | 3 | B.1.416 | 0.003807 |
S | 242 | L242F | Ctt | Ttt | 3 | 3 | B.1.427 | 0.000151 |
S | 242 | L242del | CTT | --- | 3 | 3 | B.1.427 | 0.000151 |
S | 242 | L242F | Ctt | Ttt | 3 | 3 | B.1.429 | 0.000071 |
S | 242 | L242F | Ctt | Ttt | 3 | 3 | B.1.517 | 0.001281 |
S | 242 | L242del | CTT | --- | 3 | 3 | B.1.596 | 0.000261 |
S | 242 | L242del | CTT | --- | 3 | 3 | B.1.617.1 | 0.000387 |
S | 242 | L242I | Ctt | Att | 3 | 3 | B.1.617.2 | 0.000011 |
S | 242 | L242V | Ctt | Gtt | 3 | 3 | B.1.617.2 | 0.000011 |
S | 242 | L242F | Ctt | Ttt | 3 | 3 | P.1.12 | 0.001452 |
S | 242 | L242del | CTT | --- | 2 | 2 | 0.111111 | |
S | 242 | L242F | CtT | TtC | 1 | 2 | 0.055556 | |
S | 242 | L242S | CTt | TCt | 1 | 2 | 0.055556 | |
S | 242 | L242F | Ctt | Ttt | 1 | 2 | 0.055556 | |
S | 242 | L242S | CTT | TCC | 1 | 2 | 0.055556 | |
S | 242 | L242A | CTt | GCt | 1 | 2 | 0.055556 | |
S | 242 | L242V | CtT | GtC | 1 | 2 | 0.055556 | |
S | 242 | L242A | CTT | GCC | 1 | 2 | 0.055556 | |
S | 242 | L242V | Ctt | Gtt | 1 | 2 | 0.055556 | |
S | 242 | L242P | cTt | cCt | 1 | 2 | 0.055556 | |
S | 242 | L242P | cTT | cCC | 1 | 2 | 0.055556 | |
S | 242 | L242T | CTt | ACt | 2 | 2 | All | 0 |
S | 242 | L242A | CTt | GCt | 1 | 2 | All | 0 |
S | 242 | L242A | CTT | GCC | 1 | 2 | All | 0 |
S | 242 | L242R | cTt | cGt | 2 | 2 | AY.103 | 0.000012 |
S | 242 | L242del | CTT | --- | 2 | 2 | AY.105 | 0.001286 |
S | 242 | L242del | CTT | --- | 2 | 2 | AY.114 | 0.000462 |
S | 242 | L242del | CTT | --- | 2 | 2 | AY.118 | 0.000125 |
S | 242 | L242F | Ctt | Ttt | 2 | 2 | AY.120 | 0.000074 |
S | 242 | L242del | CTT | --- | 2 | 2 | AY.13 | 0.000322 |
S | 242 | L242P | cTt | cCt | 2 | 2 | AY.23.1 | 0.000835 |
S | 242 | L242R | cTt | cGt | 2 | 2 | AY.25 | 0.000012 |
S | 242 | L242V | Ctt | Gtt | 2 | 2 | AY.29 | 0.000032 |
S | 242 | L242F | Ctt | Ttt | 2 | 2 | AY.3 | 0.00002 |
S | 242 | L242R | cTt | cGt | 2 | 2 | AY.3 | 0.00002 |
S | 242 | L242L | ctT | ctC | 2 | 2 | AY.3 | 0.00002 |
S | 242 | L242L | ctT | ctC | 2 | 2 | AY.3.1 | 0.000171 |
S | 242 | L242del | CTT | --- | 2 | 2 | AY.3.1 | 0.000171 |
S | 242 | L242V | Ctt | Gtt | 2 | 2 | AY.33 | 0.000134 |
S | 242 | L242del1 | cTt | c-t | 1 | 2 | AY.4 | 0.000002 |
S | 242 | L242del1 | ctT | ct- | 1 | 2 | AY.4 | 0.000002 |
S | 242 | L242F | Ctt | Ttt | 2 | 2 | AY.42 | 0.00008 |
S | 242 | L242L | ctT | ctA | 1 | 2 | AY.43 | 0.000004 |
S | 242 | L242L | ctT | ctC | 1 | 2 | AY.43 | 0.000004 |
S | 242 | L242del1 | Ctt | -tt | 1 | 2 | AY.44 | 0.000006 |
S | 242 | L242del1 | cTt | c-t | 1 | 2 | AY.44 | 0.000006 |
S | 242 | L242del | CTT | --- | 2 | 2 | AY.46 | 0.000208 |
S | 242 | L242del | CTT | --- | 2 | 2 | AY.5.3 | 0.000675 |
S | 242 | L242del | CTT | --- | 2 | 2 | AY.63 | 0.000774 |
S | 242 | L242del | CTT | --- | 2 | 2 | AY.70 | 0.000417 |
S | 242 | L242del | CTT | --- | 2 | 2 | AY.95 | 0.001522 |
S | 242 | L242del | CTT | --- | 2 | 2 | AY.98 | 0.000158 |
S | 242 | L242del | CTT | --- | 2 | 2 | AY.99.2 | 0.000184 |
S | 242 | L242I | Ctt | Att | 2 | 2 | B.1.1 | 0.000036 |
S | 242 | L242del1 | CtT | Nt- | 1 | 2 | B.1.1 | 0.000018 |
S | 242 | L242del1 | ctT | ct- | 1 | 2 | B.1.1 | 0.000018 |
S | 242 | L242del | CTT | --- | 2 | 2 | B.1.1.222 | 0.000408 |
S | 242 | L242del | CTT | --- | 2 | 2 | B.1.1.28 | 0.000622 |
S | 242 | L242del | CTT | --- | 2 | 2 | B.1.1.294 | 0.002532 |
S | 242 | L242del | CTT | --- | 2 | 2 | B.1.1.318 | 0.000604 |
S | 242 | L242I | Ctt | Att | 2 | 2 | B.1.1.354 | 0.008772 |
S | 242 | L242del | CTT | --- | 2 | 2 | B.1.1.375 | 0.02381 |
S | 242 | L242del | CTT | --- | 2 | 2 | B.1.1.507 | 0.017391 |
S | 242 | L242del | CTT | --- | 2 | 2 | B.1.1.528 | 0.009615 |
S | 242 | L242F | Ctt | Ttt | 2 | 2 | B.1.160 | 0.000062 |
S | 242 | L242del | CTT | --- | 2 | 2 | B.1.177.16 | 0.001329 |
S | 242 | L242del | CTT | --- | 2 | 2 | B.1.177.2 | 0.009091 |
S | 242 | L242del | CTT | --- | 2 | 2 | B.1.177.31 | 0.022989 |
S | 242 | L242del | CTT | --- | 2 | 2 | B.1.177.54 | 0.001213 |
S | 242 | L242del | CTT | --- | 2 | 2 | B.1.177.81 | 0.000379 |
S | 242 | L242L | ctT | ctC | 2 | 2 | B.1.2 | 0.000018 |
S | 242 | L242F | Ctt | Ttt | 2 | 2 | B.1.210 | 0.004264 |
S | 242 | L242F | Ctt | Ttt | 2 | 2 | B.1.221 | 0.000142 |
S | 242 | L242del | CTT | --- | 2 | 2 | B.1.243 | 0.000139 |
S | 242 | L242F | Ctt | Ttt | 2 | 2 | B.1.258 | 0.000133 |
S | 242 | L242L | ctT | ctC | 2 | 2 | B.1.258 | 0.000133 |
S | 242 | L242del | CTT | --- | 2 | 2 | B.1.258.11 | 0.000793 |
S | 242 | L242I | Ctt | Att | 2 | 2 | B.1.258.17 | 0.000208 |
S | 242 | L242del | CTT | --- | 2 | 2 | B.1.258.3 | 0.00335 |
S | 242 | L242del | CTT | --- | 2 | 2 | B.1.351.1 | 0.076923 |
S | 242 | L242del | CTT | --- | 2 | 2 | B.1.36 | 0.000292 |
S | 242 | L242L | ctT | ctA | 2 | 2 | B.1.438.1 | 0.000215 |
S | 242 | L242F | Ctt | Ttt | 2 | 2 | B.1.466.2 | 0.000782 |
S | 242 | L242F | Ctt | Ttt | 2 | 2 | B.1.564 | 0.000852 |
S | 242 | L242del | CTT | --- | 2 | 2 | B.1.576 | 0.001813 |
S | 242 | L242F | Ctt | Ttt | 2 | 2 | B.1.617.1 | 0.000258 |
S | 242 | L242R | cTt | cGt | 2 | 2 | B.1.617.2 | 0.000008 |
S | 242 | L242del | CTT | --- | 2 | 2 | B.1.623 | 0.001073 |
S | 242 | L242F | Ctt | Ttt | 2 | 2 | B.1.637 | 0.000146 |
S | 242 | L242del | CTT | --- | 2 | 2 | B.1.637 | 0.000146 |
S | 242 | L242del | CTT | --- | 2 | 2 | C.16 | 0.002121 |
S | 242 | L242del | CTT | --- | 2 | 2 | C.36.3 | 0.001134 |
S | 242 | L242H | cTt | cAt | 2 | 2 | C.37 | 0.000232 |
S | 242 | L242F | Ctt | Ttt | 2 | 2 | D.2 | 0.00015 |
S | 242 | L242L | ctT | ctC | 2 | 2 | P.1 | 0.000032 |
S | 242 | L242del | CTT | --- | 2 | 2 | P.1.12 | 0.000968 |
S | 242 | L242F | Ctt | Ttt | 2 | 2 | P.1.14 | 0.000096 |
S | 242 | L242F | Ctt | Ttt | 2 | 2 | P.1.17 | 0.000324 |
S | 242 | L242P | cTt | cCt | 2 | 2 | P.2 | 0.000373 |
S | 242 | L242del | CTT | --- | 2 | 2 | Q.2 | 0.001227 |
S | 242 | L242del | CTT | --- | 2 | 2 | Q.4 | 0.00091 |
S | 242 | L242F | Ctt | Ttt | 2 | 2 | Q.8 | 0.00033 |
S | 242 | L242del | CTT | --- | 2 | 2 | Q.8 | 0.00033 |
S | 242 | L242I | Ctt | Att | 1 | 1 | 0.055556 | |
S | 242 | L242N | CTt | AAt | 1 | 1 | 0.055556 | |
S | 242 | L242H | cTt | cAt | 1 | 1 | 0.055556 | |
S | 242 | L242L | ctT | ctC | 1 | 1 | 0.055556 | |
S | 242 | L242del | CTT | --- | 1 | 1 | A | 0.000387 |
S | 242 | L242P | cTt | cCt | 1 | 1 | A.1 | 0.000282 |
S | 242 | L242P | cTt | cCt | 1 | 1 | A.12 | 0.166667 |
S | 242 | L242del | CTT | --- | 1 | 1 | A.19 | 0.009434 |
S | 242 | L242del | CTT | --- | 1 | 1 | A.2 | 0.000662 |
S | 242 | L242P | cTt | cCt | 1 | 1 | A.2.4 | 0.003367 |
S | 242 | L242del | CTT | --- | 1 | 1 | A.2.5 | 0.000499 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | A.2.5 | 0.000499 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | A.2.5.1 | 0.004808 |
S | 242 | L242del | CTT | --- | 1 | 1 | A.23 | 0.010526 |
S | 242 | L242P | cTt | cCt | 1 | 1 | A.23.1 | 0.000704 |
S | 242 | L242del | CTT | --- | 1 | 1 | A.27 | 0.001656 |
S | 242 | L242del | CTT | --- | 1 | 1 | A.29 | 0.005319 |
S | 242 | L242del | CTT | --- | 1 | 1 | AD.2 | 0.000219 |
S | 242 | L242C | CTt | TGt | 1 | 1 | All | 0 |
S | 242 | L242N | CTt | AAt | 1 | 1 | All | 0 |
S | 242 | L242Y | CTt | TAt | 1 | 1 | All | 0 |
S | 242 | L242del | CTT | --- | 1 | 1 | AU.3 | 0.00211 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | AY.1 | 0.000396 |
S | 242 | L242L | ctT | ctA | 1 | 1 | AY.100 | 0.000046 |
S | 242 | L242del | CTT | --- | 1 | 1 | AY.101 | 0.00049 |
S | 242 | L242L | ctT | ctC | 1 | 1 | AY.102 | 0.000027 |
S | 242 | L242del1 | Ctt | -tt | 1 | 1 | AY.103 | 0.000006 |
S | 242 | L242I | Ctt | Att | 1 | 1 | AY.111 | 0.000183 |
S | 242 | L242del | CTT | --- | 1 | 1 | AY.111 | 0.000183 |
S | 242 | L242del | CTT | --- | 1 | 1 | AY.113 | 0.000142 |
S | 242 | L242del | CTT | --- | 1 | 1 | AY.117 | 0.000085 |
S | 242 | L242R | cTt | cGt | 1 | 1 | AY.118 | 0.000063 |
S | 242 | L242del2 | cTT | c-- | 1 | 1 | AY.118 | 0.000063 |
S | 242 | L242del | CTT | --- | 1 | 1 | AY.121 | 0.000135 |
S | 242 | L242del | CTT | --- | 1 | 1 | AY.2 | 0.000356 |
S | 242 | L242I | Ctt | Att | 1 | 1 | AY.20 | 0.000039 |
S | 242 | L242del1 | ctT | ct- | 1 | 1 | AY.23 | 0.00007 |
S | 242 | L242L | ctT | ctC | 1 | 1 | AY.23 | 0.00007 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | AY.26 | 0.000028 |
S | 242 | L242I | Ctt | Att | 1 | 1 | AY.28 | 0.00189 |
S | 242 | L242I | Ctt | Att | 1 | 1 | AY.29 | 0.000016 |
S | 242 | L242P | cTt | cCt | 1 | 1 | AY.3 | 0.00001 |
S | 242 | L242I | Ctt | Att | 1 | 1 | AY.3 | 0.00001 |
S | 242 | L242del | CTT | --- | 1 | 1 | AY.30 | 0.000396 |
S | 242 | L242P | cTt | cCt | 1 | 1 | AY.33 | 0.000067 |
S | 242 | L242del | CTT | --- | 1 | 1 | AY.37 | 0.000316 |
S | 242 | L242L | ctT | ctC | 1 | 1 | AY.39 | 0.000025 |
S | 242 | L242del | CTT | --- | 1 | 1 | AY.39.1 | 0.00004 |
S | 242 | L242P | cTt | cCt | 1 | 1 | AY.4 | 0.000002 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | AY.4.2 | 0.000022 |
S | 242 | L242del | CTT | --- | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | AY.4.5 | 0.000107 |
S | 242 | L242del | CTT | --- | 1 | 1 | AY.40 | 0.000964 |
S | 242 | L242L | ctT | ctC | 1 | 1 | AY.41 | 0.000294 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | AY.41 | 0.000294 |
S | 242 | L242R | cTt | cGt | 1 | 1 | AY.42 | 0.00004 |
S | 242 | L242T | CTt | ACt | 1 | 1 | AY.43 | 0.000004 |
S | 242 | L242P | cTt | cCt | 1 | 1 | AY.44 | 0.000006 |
S | 242 | L242del2 | cTT | c-- | 1 | 1 | AY.44 | 0.000006 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | AY.45 | 0.000122 |
S | 242 | L242del | CTT | --- | 1 | 1 | AY.46.1 | 0.001027 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | AY.46.2 | 0.000635 |
S | 242 | L242del2 | cTT | c-- | 1 | 1 | AY.46.6 | 0.000072 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | AY.46.6 | 0.000072 |
S | 242 | L242R | cTt | cGt | 1 | 1 | AY.5.4 | 0.000277 |
S | 242 | L242del | CTT | --- | 1 | 1 | AY.5.4 | 0.000277 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | AY.50 | 0.000799 |
S | 242 | L242del | CTT | --- | 1 | 1 | AY.50 | 0.000799 |
S | 242 | L242del | CTT | --- | 1 | 1 | AY.51 | 0.000909 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | AY.54 | 0.000095 |
S | 242 | L242del | CTT | --- | 1 | 1 | AY.54 | 0.000095 |
S | 242 | L242del | CTT | --- | 1 | 1 | AY.58 | 0.000907 |
S | 242 | L242del | CTT | --- | 1 | 1 | AY.59 | 0.00053 |
S | 242 | L242L | ctT | ctA | 1 | 1 | AY.6 | 0.000041 |
S | 242 | L242del | CTT | --- | 1 | 1 | AY.6 | 0.000041 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | AY.61 | 0.000105 |
S | 242 | L242del | CTT | --- | 1 | 1 | AY.61 | 0.000105 |
S | 242 | L242L | ctT | ctG | 1 | 1 | AY.64 | 0.000595 |
S | 242 | L242del | CTT | --- | 1 | 1 | AY.65 | 0.000533 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | AY.65 | 0.000533 |
S | 242 | L242del | CTT | --- | 1 | 1 | AY.7.2 | 0.000559 |
S | 242 | L242del | CTT | --- | 1 | 1 | AY.73 | 0.000665 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | AY.74 | 0.000116 |
S | 242 | L242del | CTT | --- | 1 | 1 | AY.74 | 0.000116 |
S | 242 | L242L | ctT | ctC | 1 | 1 | AY.75 | 0.000056 |
S | 242 | L242H | cTt | cAt | 1 | 1 | AY.75.1 | 0.00018 |
S | 242 | L242del | CTT | --- | 1 | 1 | AY.78 | 0.001541 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | AY.85 | 0.000427 |
S | 242 | L242P | cTt | cCt | 1 | 1 | AY.87 | 0.000833 |
S | 242 | L242del | CTT | --- | 1 | 1 | AY.89 | 0.004902 |
S | 242 | L242L | ctT | ctG | 1 | 1 | AY.9 | 0.000068 |
S | 242 | L242del | CTT | --- | 1 | 1 | AY.9 | 0.000068 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | AY.9.1 | 0.000084 |
S | 242 | L242P | cTt | cCt | 1 | 1 | AY.9.1 | 0.000084 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | AY.9.2 | 0.000037 |
S | 242 | L242del | CTT | --- | 1 | 1 | AY.91 | 0.00073 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | AY.96 | 0.002075 |
S | 242 | L242I | Ctt | Att | 1 | 1 | AY.97 | 0.001701 |
S | 242 | L242L | ctT | ctC | 1 | 1 | B | 0.000128 |
S | 242 | L242I | Ctt | Att | 1 | 1 | B.1 | 0.000009 |
S | 242 | L242V | Ctt | Gtt | 1 | 1 | B.1 | 0.000009 |
S | 242 | L242del1 | Ctt | -tt | 1 | 1 | B.1 | 0.000009 |
S | 242 | L242Q | cTT | cAA | 1 | 1 | B.1 | 0.000009 |
S | 242 | L242del2 | CTT | --N | 1 | 1 | B.1.1 | 0.000018 |
S | 242 | L242T | CTt | ACt | 1 | 1 | B.1.1 | 0.000018 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | B.1.1.141 | 0.002012 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.1.148 | 0.008772 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.1.159 | 0.004673 |
S | 242 | L242del1 | cTt | c-t | 1 | 1 | B.1.1.161 | 0.003534 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.1.192 | 0.002309 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.1.214 | 0.000055 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.1.217 | 0.003636 |
S | 242 | L242del2 | CTT | --N | 1 | 1 | B.1.1.236 | 0.006897 |
S | 242 | L242H | cTt | cAt | 1 | 1 | B.1.1.28 | 0.000311 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.1.284 | 0.000107 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.1.298 | 0.000862 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.1.323 | 0.014085 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.1.352 | 0.03125 |
S | 242 | L242V | Ctt | Gtt | 1 | 1 | B.1.1.354 | 0.004386 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.1.356 | 0.008547 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.1.369 | 0.000446 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.1.372 | 0.000689 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | B.1.1.372 | 0.000689 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.1.39 | 0.00051 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | B.1.1.39 | 0.00051 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | B.1.1.434 | 0.000349 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.1.448 | 0.002033 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.1.464 | 0.001473 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.1.486 | 0.001577 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | B.1.1.50 | 0.000679 |
S | 242 | L242L | ctT | ctC | 1 | 1 | B.1.1.523 | 0.001563 |
S | 242 | L242H | cTt | cAt | 1 | 1 | B.1.1.7 | 0.000001 |
S | 242 | L242del1 | ctT | ct- | 1 | 1 | B.1.1.7 | 0.000001 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.110.3 | 0.000718 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.111 | 0.001175 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.139 | 0.000733 |
S | 242 | L242Q | cTT | cAA | 1 | 1 | B.1.157 | 0.002985 |
S | 242 | L242H | cTt | cAt | 1 | 1 | B.1.160 | 0.000031 |
S | 242 | L242del2 | CTt | --t | 1 | 1 | B.1.160.23 | 0.004831 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.160.7 | 0.002079 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | B.1.177.18 | 0.00116 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.177.18 | 0.00116 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.177.28 | 0.007407 |
S | 242 | L242I | Ctt | Att | 1 | 1 | B.1.177.39 | 0.015385 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.177.44 | 0.000519 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.177.51 | 0.004566 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | B.1.177.54 | 0.000606 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.177.60 | 0.000218 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.177.62 | 0.001192 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.177.69 | 0.001484 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.177.77 | 0.000726 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.177.82 | 0.000477 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | B.1.177.83 | 0.001481 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.177.85 | 0.005435 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.177.87 | 0.000728 |
S | 242 | L242del1 | Ctt | -tt | 1 | 1 | B.1.2 | 0.000009 |
S | 242 | L242P | cTt | cCt | 1 | 1 | B.1.2 | 0.000009 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.22 | 0.001318 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | B.1.232 | 0.000537 |
S | 242 | L242P | cTt | cCt | 1 | 1 | B.1.234 | 0.000132 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.237 | 0.004975 |
S | 242 | L242V | Ctt | Gtt | 1 | 1 | B.1.240 | 0.000216 |
S | 242 | L242I | Ctt | Att | 1 | 1 | B.1.243 | 0.00007 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | B.1.243 | 0.00007 |
S | 242 | L242R | cTt | cGt | 1 | 1 | B.1.243 | 0.00007 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | B.1.243.1 | 0.022222 |
S | 242 | L242P | cTt | cCt | 1 | 1 | B.1.258 | 0.000067 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.258.14 | 0.00098 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.258.17 | 0.000104 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | B.1.320 | 0.001245 |
S | 242 | L242L | ctT | ctA | 1 | 1 | B.1.351 | 0.00003 |
S | 242 | L242Y | CTt | TAt | 1 | 1 | B.1.351 | 0.00003 |
S | 242 | L242C | CTt | TGt | 1 | 1 | B.1.351.1 | 0.038462 |
S | 242 | L242del2 | cTT | c-- | 1 | 1 | B.1.351.5 | 0.0006 |
S | 242 | L242L | ctT | ctC | 1 | 1 | B.1.36 | 0.000146 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.36.20 | 0.016949 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.36.37 | 0.002778 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.367 | 0.000792 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | B.1.369 | 0.000285 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.369 | 0.000285 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.375 | 0.00082 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.399 | 0.001934 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.400 | 0.000429 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.409 | 0.000781 |
S | 242 | L242I | Ctt | Att | 1 | 1 | B.1.409 | 0.000781 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | B.1.415 | 0.014286 |
S | 242 | L242L | ctT | ctA | 1 | 1 | B.1.415.1 | 0.007576 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.417 | 0.028571 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | B.1.424 | 0.008065 |
S | 242 | L242I | Ctt | Att | 1 | 1 | B.1.429 | 0.000024 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.438.1 | 0.000107 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.441 | 0.009615 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.497 | 0.000315 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | B.1.499.1 | 0.111111 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.517 | 0.000427 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | B.1.525 | 0.000113 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | B.1.526 | 0.000024 |
S | 242 | L242I | Ctt | Att | 1 | 1 | B.1.526 | 0.000024 |
S | 242 | L242P | cTt | cCt | 1 | 1 | B.1.530 | 0.007143 |
S | 242 | L242V | Ctt | Gtt | 1 | 1 | B.1.560 | 0.00463 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.561 | 0.000397 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.582 | 0.000491 |
S | 242 | L242P | cTt | cCt | 1 | 1 | B.1.595 | 0.000261 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | B.1.596 | 0.000087 |
S | 242 | L242L | ctT | ctC | 1 | 1 | B.1.596 | 0.000087 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.599 | 0.00365 |
S | 242 | L242I | Ctt | Att | 1 | 1 | B.1.619 | 0.000871 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | B.1.620 | 0.000946 |
S | 242 | L242del2 | CTT | --N | 1 | 1 | B.1.620 | 0.000946 |
S | 242 | L242L | ctT | ctC | 1 | 1 | B.1.621 | 0.000089 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.1.8 | 0.001972 |
S | 242 | L242I | Ctt | Att | 1 | 1 | B.35 | 0.007812 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | B.4 | 0.002208 |
S | 242 | L242del | CTT | --- | 1 | 1 | B.6 | 0.00091 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | B.60 | 0.015873 |
S | 242 | L242del | CTT | --- | 1 | 1 | C.1.1 | 0.076923 |
S | 242 | L242del | CTT | --- | 1 | 1 | C.1.2 | 0.004255 |
S | 242 | L242del | CTT | --- | 1 | 1 | C.36 | 0.000911 |
S | 242 | L242R | cTt | cGt | 1 | 1 | D.2 | 0.000075 |
S | 242 | L242P | cTt | cCt | 1 | 1 | P.1 | 0.000016 |
S | 242 | L242I | Ctt | Att | 1 | 1 | P.1 | 0.000016 |
S | 242 | L242del | CTT | --- | 1 | 1 | P.1.1 | 0.000318 |
S | 242 | L242del | CTT | --- | 1 | 1 | P.1.14 | 0.000048 |
S | 242 | L242F | Ctt | Ttt | 1 | 1 | P.1.15 | 0.000232 |
S | 242 | L242del | CTT | --- | 1 | 1 | P.1.6 | 0.001946 |
S | 242 | L242V | Ctt | Gtt | 1 | 1 | Q.1 | 0.000126 |
S | 242 | L242del | CTT | --- | 1 | 1 | Q.3 | 0.000145 |
S | 242 | L242L | ctT | ctA | 1 | 1 | Q.3 | 0.000145 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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