CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 242

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S242L242deldelCTT---3920539205122286-22288
S242L242FnonsynCttTtt9099080.998922286-22288
S242L242FnonsynCtTTtC90910.0011001122286-22288
S242L242LsynctTctC4052920.72098822286-22288
S242L242LsynctTctA405940.23209922286-22288
S242L242LsynctTctG405190.046913622286-22288
S242L242PnonsyncTtcCt3333320.99699722286-22288
S242L242PnonsyncTTcCC33310.00300322286-22288
S242L242HnonsyncTtcAt158158122286-22288
S242L242InonsynCttAtt129129122286-22288
S242L242QnonsyncTTcAA4040122286-22288
S242L242del2delcTTc--34220.64705922286-22288
S242L242del2delCTT--N34100.29411822286-22288
S242L242del2delCTt--t3420.058823522286-22288
S242L242del1delcTTc-N32100.312522286-22288
S242L242del1delctTct-3290.2812522286-22288
S242L242del1delCtt-tt3280.2522286-22288
S242L242del1delcTtc-t3240.12522286-22288
S242L242del1delCtTNt-3210.0312522286-22288
S242L242RnonsyncTtcGt16150.937522286-22288
S242L242RnonsynCTTAGA1610.062522286-22288
S242L242VnonsynCttGtt14130.92857122286-22288
S242L242VnonsynCtTGtC1410.071428622286-22288
S242L242SnonsynCTtTCt650.83333322286-22288
S242L242SnonsynCTTTCC610.16666722286-22288
S242L242TnonsynCTtACt22122286-22288
S242L242AnonsynCTtGCt210.522286-22288
S242L242AnonsynCTTGCC210.522286-22288
S242L242NnonsynCTtAAt11122286-22288
S242L242CnonsynCTtTGt11122286-22288
S242L242YnonsynCTtTAt11122286-22288

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S242L242delCTT---3920539205All0.007498
S242L242delCTT---3021630216B.1.3510.898216
S242L242delCTT---31363136B.1.351.20.948865
S242L242delCTT---13901390B.1.351.50.833333
S242L242delCTT---10351035B.1.351.30.907099
S242L242delCTT---10121012B.1.6200.957427
S242L242FCttTtt908909All0.000174
S242L242FCtTTtC1909All0
S242L242delCTT---649649AY.40.00101
S242L242LctTctC292405All0.000056
S242L242LctTctA94405All0.000018
S242L242LctTctG19405All0.000004
S242L242delCTT---371371B.1.1.70.000332
S242L242PcTtcCt332333All0.000063
S242L242PcTTcCC1333All0
S242L242delCTT---307307B.10.002812
S242L242HcTtcAt158158All0.00003
S242L242FCttTtt137137AY.1210.018539
S242L242FCttTtt132132B.1.1.70.000118
S242L242ICttAtt129129All0.000025
S242L242LctTctC126126AY.420.005069
S242L242delCTT---126126B.1.415.10.954545
S242L242PcTtcCt112112B.1.351.50.067146
S242L242HcTtcAt101101B.1.3510.003002
S242L242FCttTtt9595B.1.617.20.000358
S242L242PcTtcCt8282B.1.10.001488
S242L242FCttTtt7777P.10.001213
S242L242FCttTtt6666AY.920.01896
S242L242PcTtcCt6060B.1.3510.001784
S242L242LctTctA2955B.1.1.70.000026
S242L242LctTctC2555B.1.1.70.000022
S242L242LctTctG155B.1.1.70.000001
S242L242delCTT---5555B.1.617.20.000207
S242L242delCTT---4848B.1.10.000871
S242L242ICttAtt4343B.1.177.210.003288
S242L242delCTT---4141AY.250.000247
S242L242LctTctA4141B.1.5471
S242L242QcTTcAA4040All0.000008
S242L242delCTT---4040AY.1030.000248
S242L242delCTT---4040AY.430.000177
S242L242FCttTtt3737C.370.004294
S242L242delCTT---3636AY.440.000219
S242L242del2cTTc--2234All0.000004
S242L242del2CTT--N1034All0.000002
S242L242del2CTt--t234All0
S242L242FCttTtt3333B.1.20.000291
S242L242del1cTTc-N1032All0.000002
S242L242del1ctTct-932All0.000002
S242L242del1Ctt-tt832All0.000002
S242L242del1cTtc-t432All0.000001
S242L242del1CtTNt-132All0
S242L242delCTT---3131B.1.20.000273
S242L242QcTTcAA3131B.1.3510.000922
S242L242FCttTtt2929AY.40.000045
S242L242FCttTtt2727B.1.1770.000356
S242L242delCTT---2626AY.30.000259
S242L242delCTT---2626B.1.1600.000811
S242L242HcTtcAt2626B.1.351.50.015588
S242L242FCttTtt2626B.1.4700.036517
S242L242FCttTtt2525AY.250.00015
S242L242LctTctC2525AY.7.10.002818
S242L242delCTT---2525B.1.1770.000329
S242L242ICttAtt2424B.1.1.70.000021
S242L242delCTT---2424B.1.5260.000564
S242L242PcTtcCt2323B.1.351.20.006959
S242L242delCTT---2323P.10.000362
S242L242delCTT---2121B.1.4290.000494
S242L242delCTT---2020AY.1190.000706
S242L242PcTtcCt1919B.1.1.70.000017
S242L242LctTctC1919B.1.1770.00025
S242L242delCTT---1919P.30.030303
S242L242FCttTtt1818B.10.000165
S242L242FCttTtt1717B.1.1.1660.566667
S242L242delCTT---1717B.1.6360.114094
S242L242RcTtcGt1516All0.000003
S242L242RCTTAGA116All0
S242L242LctTctG1616B.1.2400.003449
S242L242delCTT---1616C.370.001857
S242L242VCttGtt1314All0.000002
S242L242VCtTGtC114All0
S242L242LctTctC1114AY.250.000066
S242L242LctTctA314AY.250.000018
S242L242FCttTtt1414AY.440.000085
S242L242FCttTtt1313AY.1030.000081
S242L242LctTctA913AY.440.000055
S242L242LctTctC413AY.440.000024
S242L242delCTT---1313B.1.2210.000923
S242L242HcTtcAt1313B.1.351.30.011394
S242L242LctTctC1313B.1.5170.005551
S242L242delCTT---1212B.1.177.70.001978
S242L242del1ctTct-412B.1.351.50.002398
S242L242del1Ctt-tt412B.1.351.50.002398
S242L242del1cTTc-N312B.1.351.50.001799
S242L242del1cTtc-t112B.1.351.50.0006
S242L242delCTT---1111AY.260.000311
S242L242FCttTtt1111B.1.3910.012401
S242L242LctTctC911B.1.617.20.000034
S242L242LctTctA211B.1.617.20.000008
S242L242FCttTtt1010AY.430.000044
S242L242delCTT---1010B.1.177.860.001835
S242L242delCTT---1010P.1.150.002323
S242L242delCTT---99AY.1020.000239
S242L242FCttTtt99AY.1020.000239
S242L242ICttAtt99AY.1200.000335
S242L242delCTT---99AY.230.000628
S242L242delCTT---99AY.4.20.000195
S242L242delCTT---99B0.00115
S242L242LctTctC99B.1.258.170.000936
S242L242del2cTTc--79B.1.3510.000208
S242L242del2CTT--N29B.1.3510.000059
S242L242delCTT---99B.1.5250.001018
S242L242delCTT---99B.1.5540.039648
S242L242FCttTtt88AY.390.000198
S242L242delCTT---88B.1.177.730.00453
S242L242del1cTTc-N78B.1.3510.000208
S242L242del1ctTct-18B.1.3510.00003
S242L242HcTtcAt88B.1.351.20.002421
S242L242delCTT---88B.1.5950.002088
S242L242del2cTTc--77AY.290.00011
S242L242delCTT---77AY.390.000173
S242L242delCTT---77AY.50.000145
S242L242delCTT---77AY.560.011236
S242L242delCTT---77AY.750.000392
S242L242delCTT---77AY.98.10.000339
S242L242LctTctC67B.10.000055
S242L242LctTctA17B.10.000009
S242L242delCTT---77B.1.1.4320.008861
S242L242FCttTtt77B.1.1.5190.000278
S242L242ICttAtt77B.1.20.000062
S242L242QcTTcAA77B.1.351.20.002118
S242L242delCTT---77Q.10.000884
S242L242SCTtTCt56All0.000001
S242L242SCTTTCC16All0
S242L242FCttTtt66AY.230.000418
S242L242delCTT---66AY.330.000401
S242L242LctTctC56AY.40.000008
S242L242LctTctA16AY.40.000002
S242L242LctTctC55AY.290.000079
S242L242ICttAtt55AY.40.000008
S242L242delCTT---55AY.46.60.000361
S242L242delCTT---55AY.75.10.000902
S242L242FCttTtt55B.1.10.000091
S242L242del2cTTc--45B.1.1.70.000004
S242L242del2CTt--t15B.1.1.70.000001
S242L242del2CTT--N55B.1.351.30.004382
S242L242FCttTtt44AY.1000.000184
S242L242FCttTtt44AY.1100.000451
S242L242delCTT---44AY.1200.000149
S242L242delCTT---44AY.140.000352
S242L242delCTT---44AY.200.000155
S242L242ICttAtt44AY.430.000018
S242L242FCttTtt44AY.50.000083
S242L242ICttAtt44AY.50.000083
S242L242PcTtcCt44B.10.000037
S242L242LctTctC44B.1.10.000073
S242L242delCTT---44B.1.1.3890.024242
S242L242PcTtcCt44B.1.177.100.003512
S242L242ICttAtt44B.1.177.810.000757
S242L242delCTT---44B.1.2580.000266
S242L242PcTtcCt44B.1.351.30.003506
S242L242delCTT---44B.1.6090.001918
S242L242SCTtTCt44B.1.6200.003784
S242L242delCTT---44B.1.6210.000354
S242L242ICttAtt44P.1.80.019139
S242L242delCTT---44P.50.054795
S242L242delCTT---33AY.10.001187
S242L242delCTT---33AY.1000.000138
S242L242LctTctC33AY.1030.000019
S242L242delCTT---33AY.1060.001005
S242L242delCTT---33AY.116.10.000934
S242L242FCttTtt33AY.200.000117
S242L242delCTT---33AY.290.000047
S242L242delCTT---33AY.360.000445
S242L242HcTtcAt33AY.40.000005
S242L242delCTT---33AY.4.50.000322
S242L242delCTT---33AY.420.000121
S242L242delCTT---33AY.450.000365
S242L242FCttTtt33AY.470.000093
S242L242delCTT---33AY.470.000093
S242L242LctTctC33AY.780.004622
S242L242delCTT---33B.1.1.5190.000119
S242L242RcTtcGt23B.1.1.70.000002
S242L242RCTTAGA13B.1.1.70.000001
S242L242delCTT---33B.1.1700.012931
S242L242PcTtcCt33B.1.1770.00004
S242L242delCTT---33B.1.2400.000647
S242L242delCTT---33B.1.3360.007317
S242L242LctTctC33B.1.36.90.009646
S242L242FCttTtt33B.1.3960.002117
S242L242delCTT---33B.1.4160.003807
S242L242FCttTtt33B.1.4270.000151
S242L242delCTT---33B.1.4270.000151
S242L242FCttTtt33B.1.4290.000071
S242L242FCttTtt33B.1.5170.001281
S242L242delCTT---33B.1.5960.000261
S242L242delCTT---33B.1.617.10.000387
S242L242ICttAtt33B.1.617.20.000011
S242L242VCttGtt33B.1.617.20.000011
S242L242FCttTtt33P.1.120.001452
S242L242delCTT---220.111111
S242L242FCtTTtC120.055556
S242L242SCTtTCt120.055556
S242L242FCttTtt120.055556
S242L242SCTTTCC120.055556
S242L242ACTtGCt120.055556
S242L242VCtTGtC120.055556
S242L242ACTTGCC120.055556
S242L242VCttGtt120.055556
S242L242PcTtcCt120.055556
S242L242PcTTcCC120.055556
S242L242TCTtACt22All0
S242L242ACTtGCt12All0
S242L242ACTTGCC12All0
S242L242RcTtcGt22AY.1030.000012
S242L242delCTT---22AY.1050.001286
S242L242delCTT---22AY.1140.000462
S242L242delCTT---22AY.1180.000125
S242L242FCttTtt22AY.1200.000074
S242L242delCTT---22AY.130.000322
S242L242PcTtcCt22AY.23.10.000835
S242L242RcTtcGt22AY.250.000012
S242L242VCttGtt22AY.290.000032
S242L242FCttTtt22AY.30.00002
S242L242RcTtcGt22AY.30.00002
S242L242LctTctC22AY.30.00002
S242L242LctTctC22AY.3.10.000171
S242L242delCTT---22AY.3.10.000171
S242L242VCttGtt22AY.330.000134
S242L242del1cTtc-t12AY.40.000002
S242L242del1ctTct-12AY.40.000002
S242L242FCttTtt22AY.420.00008
S242L242LctTctA12AY.430.000004
S242L242LctTctC12AY.430.000004
S242L242del1Ctt-tt12AY.440.000006
S242L242del1cTtc-t12AY.440.000006
S242L242delCTT---22AY.460.000208
S242L242delCTT---22AY.5.30.000675
S242L242delCTT---22AY.630.000774
S242L242delCTT---22AY.700.000417
S242L242delCTT---22AY.950.001522
S242L242delCTT---22AY.980.000158
S242L242delCTT---22AY.99.20.000184
S242L242ICttAtt22B.1.10.000036
S242L242del1CtTNt-12B.1.10.000018
S242L242del1ctTct-12B.1.10.000018
S242L242delCTT---22B.1.1.2220.000408
S242L242delCTT---22B.1.1.280.000622
S242L242delCTT---22B.1.1.2940.002532
S242L242delCTT---22B.1.1.3180.000604
S242L242ICttAtt22B.1.1.3540.008772
S242L242delCTT---22B.1.1.3750.02381
S242L242delCTT---22B.1.1.5070.017391
S242L242delCTT---22B.1.1.5280.009615
S242L242FCttTtt22B.1.1600.000062
S242L242delCTT---22B.1.177.160.001329
S242L242delCTT---22B.1.177.20.009091
S242L242delCTT---22B.1.177.310.022989
S242L242delCTT---22B.1.177.540.001213
S242L242delCTT---22B.1.177.810.000379
S242L242LctTctC22B.1.20.000018
S242L242FCttTtt22B.1.2100.004264
S242L242FCttTtt22B.1.2210.000142
S242L242delCTT---22B.1.2430.000139
S242L242FCttTtt22B.1.2580.000133
S242L242LctTctC22B.1.2580.000133
S242L242delCTT---22B.1.258.110.000793
S242L242ICttAtt22B.1.258.170.000208
S242L242delCTT---22B.1.258.30.00335
S242L242delCTT---22B.1.351.10.076923
S242L242delCTT---22B.1.360.000292
S242L242LctTctA22B.1.438.10.000215
S242L242FCttTtt22B.1.466.20.000782
S242L242FCttTtt22B.1.5640.000852
S242L242delCTT---22B.1.5760.001813
S242L242FCttTtt22B.1.617.10.000258
S242L242RcTtcGt22B.1.617.20.000008
S242L242delCTT---22B.1.6230.001073
S242L242FCttTtt22B.1.6370.000146
S242L242delCTT---22B.1.6370.000146
S242L242delCTT---22C.160.002121
S242L242delCTT---22C.36.30.001134
S242L242HcTtcAt22C.370.000232
S242L242FCttTtt22D.20.00015
S242L242LctTctC22P.10.000032
S242L242delCTT---22P.1.120.000968
S242L242FCttTtt22P.1.140.000096
S242L242FCttTtt22P.1.170.000324
S242L242PcTtcCt22P.20.000373
S242L242delCTT---22Q.20.001227
S242L242delCTT---22Q.40.00091
S242L242FCttTtt22Q.80.00033
S242L242delCTT---22Q.80.00033
S242L242ICttAtt110.055556
S242L242NCTtAAt110.055556
S242L242HcTtcAt110.055556
S242L242LctTctC110.055556
S242L242delCTT---11A0.000387
S242L242PcTtcCt11A.10.000282
S242L242PcTtcCt11A.120.166667
S242L242delCTT---11A.190.009434
S242L242delCTT---11A.20.000662
S242L242PcTtcCt11A.2.40.003367
S242L242delCTT---11A.2.50.000499
S242L242FCttTtt11A.2.50.000499
S242L242FCttTtt11A.2.5.10.004808
S242L242delCTT---11A.230.010526
S242L242PcTtcCt11A.23.10.000704
S242L242delCTT---11A.270.001656
S242L242delCTT---11A.290.005319
S242L242delCTT---11AD.20.000219
S242L242CCTtTGt11All0
S242L242NCTtAAt11All0
S242L242YCTtTAt11All0
S242L242delCTT---11AU.30.00211
S242L242FCttTtt11AY.10.000396
S242L242LctTctA11AY.1000.000046
S242L242delCTT---11AY.1010.00049
S242L242LctTctC11AY.1020.000027
S242L242del1Ctt-tt11AY.1030.000006
S242L242ICttAtt11AY.1110.000183
S242L242delCTT---11AY.1110.000183
S242L242delCTT---11AY.1130.000142
S242L242delCTT---11AY.1170.000085
S242L242RcTtcGt11AY.1180.000063
S242L242del2cTTc--11AY.1180.000063
S242L242delCTT---11AY.1210.000135
S242L242delCTT---11AY.20.000356
S242L242ICttAtt11AY.200.000039
S242L242del1ctTct-11AY.230.00007
S242L242LctTctC11AY.230.00007
S242L242FCttTtt11AY.260.000028
S242L242ICttAtt11AY.280.00189
S242L242ICttAtt11AY.290.000016
S242L242PcTtcCt11AY.30.00001
S242L242ICttAtt11AY.30.00001
S242L242delCTT---11AY.300.000396
S242L242PcTtcCt11AY.330.000067
S242L242delCTT---11AY.370.000316
S242L242LctTctC11AY.390.000025
S242L242delCTT---11AY.39.10.00004
S242L242PcTtcCt11AY.40.000002
S242L242FCttTtt11AY.4.20.000022
S242L242delCTT---11AY.4.2.10.000149
S242L242FCttTtt11AY.4.50.000107
S242L242delCTT---11AY.400.000964
S242L242LctTctC11AY.410.000294
S242L242FCttTtt11AY.410.000294
S242L242RcTtcGt11AY.420.00004
S242L242TCTtACt11AY.430.000004
S242L242PcTtcCt11AY.440.000006
S242L242del2cTTc--11AY.440.000006
S242L242FCttTtt11AY.450.000122
S242L242delCTT---11AY.46.10.001027
S242L242FCttTtt11AY.46.20.000635
S242L242del2cTTc--11AY.46.60.000072
S242L242FCttTtt11AY.46.60.000072
S242L242RcTtcGt11AY.5.40.000277
S242L242delCTT---11AY.5.40.000277
S242L242FCttTtt11AY.500.000799
S242L242delCTT---11AY.500.000799
S242L242delCTT---11AY.510.000909
S242L242FCttTtt11AY.540.000095
S242L242delCTT---11AY.540.000095
S242L242delCTT---11AY.580.000907
S242L242delCTT---11AY.590.00053
S242L242LctTctA11AY.60.000041
S242L242delCTT---11AY.60.000041
S242L242FCttTtt11AY.610.000105
S242L242delCTT---11AY.610.000105
S242L242LctTctG11AY.640.000595
S242L242delCTT---11AY.650.000533
S242L242FCttTtt11AY.650.000533
S242L242delCTT---11AY.7.20.000559
S242L242delCTT---11AY.730.000665
S242L242FCttTtt11AY.740.000116
S242L242delCTT---11AY.740.000116
S242L242LctTctC11AY.750.000056
S242L242HcTtcAt11AY.75.10.00018
S242L242delCTT---11AY.780.001541
S242L242FCttTtt11AY.850.000427
S242L242PcTtcCt11AY.870.000833
S242L242delCTT---11AY.890.004902
S242L242LctTctG11AY.90.000068
S242L242delCTT---11AY.90.000068
S242L242FCttTtt11AY.9.10.000084
S242L242PcTtcCt11AY.9.10.000084
S242L242FCttTtt11AY.9.20.000037
S242L242delCTT---11AY.910.00073
S242L242FCttTtt11AY.960.002075
S242L242ICttAtt11AY.970.001701
S242L242LctTctC11B0.000128
S242L242ICttAtt11B.10.000009
S242L242VCttGtt11B.10.000009
S242L242del1Ctt-tt11B.10.000009
S242L242QcTTcAA11B.10.000009
S242L242del2CTT--N11B.1.10.000018
S242L242TCTtACt11B.1.10.000018
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