CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 242

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S242L242deldelCTT---3920539205122286-22288
S242L242FnonsynCttTtt9099080.998922286-22288
S242L242FnonsynCtTTtC90910.0011001122286-22288
S242L242LsynctTctC4052920.72098822286-22288
S242L242LsynctTctA405940.23209922286-22288
S242L242LsynctTctG405190.046913622286-22288
S242L242PnonsyncTtcCt3333320.99699722286-22288
S242L242PnonsyncTTcCC33310.00300322286-22288
S242L242HnonsyncTtcAt158158122286-22288
S242L242InonsynCttAtt129129122286-22288
S242L242QnonsyncTTcAA4040122286-22288
S242L242del2delcTTc--34220.64705922286-22288
S242L242del2delCTT--N34100.29411822286-22288
S242L242del2delCTt--t3420.058823522286-22288
S242L242del1delcTTc-N32100.312522286-22288
S242L242del1delctTct-3290.2812522286-22288
S242L242del1delCtt-tt3280.2522286-22288
S242L242del1delcTtc-t3240.12522286-22288
S242L242del1delCtTNt-3210.0312522286-22288
S242L242RnonsyncTtcGt16150.937522286-22288
S242L242RnonsynCTTAGA1610.062522286-22288
S242L242VnonsynCttGtt14130.92857122286-22288
S242L242VnonsynCtTGtC1410.071428622286-22288
S242L242SnonsynCTtTCt650.83333322286-22288
S242L242SnonsynCTTTCC610.16666722286-22288
S242L242TnonsynCTtACt22122286-22288
S242L242AnonsynCTtGCt210.522286-22288
S242L242AnonsynCTTGCC210.522286-22288
S242L242NnonsynCTtAAt11122286-22288
S242L242CnonsynCTtTGt11122286-22288
S242L242YnonsynCTtTAt11122286-22288

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S242L242delCTT---3920539205All0.007498
S242L242delCTT---3021630216B.1.3510.898216
S242L242delCTT---31363136B.1.351.20.948865
S242L242delCTT---13901390B.1.351.50.833333
S242L242delCTT---10351035B.1.351.30.907099
S242L242delCTT---10121012B.1.6200.957427
S242L242FCttTtt908909All0.000174
S242L242FCtTTtC1909All0
S242L242delCTT---649649AY.40.00101
S242L242LctTctC292405All0.000056
S242L242LctTctA94405All0.000018
S242L242LctTctG19405All0.000004
S242L242delCTT---371371B.1.1.70.000332
S242L242PcTtcCt332333All0.000063
S242L242PcTTcCC1333All0
S242L242delCTT---307307B.10.002812
S242L242HcTtcAt158158All0.00003
S242L242FCttTtt137137AY.1210.018539
S242L242FCttTtt132132B.1.1.70.000118
S242L242ICttAtt129129All0.000025
S242L242LctTctC126126AY.420.005069
S242L242delCTT---126126B.1.415.10.954545
S242L242PcTtcCt112112B.1.351.50.067146
S242L242HcTtcAt101101B.1.3510.003002
S242L242FCttTtt9595B.1.617.20.000358
S242L242PcTtcCt8282B.1.10.001488
S242L242FCttTtt7777P.10.001213
S242L242FCttTtt6666AY.920.01896
S242L242PcTtcCt6060B.1.3510.001784
S242L242LctTctA2955B.1.1.70.000026
S242L242LctTctC2555B.1.1.70.000022
S242L242LctTctG155B.1.1.70.000001
S242L242delCTT---5555B.1.617.20.000207
S242L242delCTT---4848B.1.10.000871
S242L242ICttAtt4343B.1.177.210.003288
S242L242delCTT---4141AY.250.000247
S242L242LctTctA4141B.1.5471
S242L242QcTTcAA4040All0.000008
S242L242delCTT---4040AY.1030.000248
S242L242delCTT---4040AY.430.000177
S242L242FCttTtt3737C.370.004294
S242L242delCTT---3636AY.440.000219
S242L242del2cTTc--2234All0.000004
S242L242del2CTT--N1034All0.000002
S242L242del2CTt--t234All0
S242L242FCttTtt3333B.1.20.000291
S242L242del1cTTc-N1032All0.000002
S242L242del1ctTct-932All0.000002
S242L242del1Ctt-tt832All0.000002
S242L242del1cTtc-t432All0.000001
S242L242del1CtTNt-132All0
S242L242delCTT---3131B.1.20.000273
S242L242QcTTcAA3131B.1.3510.000922
S242L242FCttTtt2929AY.40.000045
S242L242FCttTtt2727B.1.1770.000356
S242L242delCTT---2626AY.30.000259
S242L242delCTT---2626B.1.1600.000811
S242L242HcTtcAt2626B.1.351.50.015588
S242L242FCttTtt2626B.1.4700.036517
S242L242FCttTtt2525AY.250.00015
S242L242LctTctC2525AY.7.10.002818
S242L242delCTT---2525B.1.1770.000329
S242L242ICttAtt2424B.1.1.70.000021
S242L242delCTT---2424B.1.5260.000564
S242L242PcTtcCt2323B.1.351.20.006959
S242L242delCTT---2323P.10.000362
S242L242delCTT---2121B.1.4290.000494
S242L242delCTT---2020AY.1190.000706
S242L242PcTtcCt1919B.1.1.70.000017
S242L242LctTctC1919B.1.1770.00025
S242L242delCTT---1919P.30.030303
S242L242FCttTtt1818B.10.000165
S242L242FCttTtt1717B.1.1.1660.566667
S242L242delCTT---1717B.1.6360.114094
S242L242RcTtcGt1516All0.000003
S242L242RCTTAGA116All0
S242L242LctTctG1616B.1.2400.003449
S242L242delCTT---1616C.370.001857
S242L242VCttGtt1314All0.000002
S242L242VCtTGtC114All0
S242L242LctTctC1114AY.250.000066
S242L242LctTctA314AY.250.000018
S242L242FCttTtt1414AY.440.000085
S242L242FCttTtt1313AY.1030.000081
S242L242LctTctA913AY.440.000055
S242L242LctTctC413AY.440.000024
S242L242delCTT---1313B.1.2210.000923
S242L242HcTtcAt1313B.1.351.30.011394
S242L242LctTctC1313B.1.5170.005551
S242L242delCTT---1212B.1.177.70.001978
S242L242del1ctTct-412B.1.351.50.002398
S242L242del1Ctt-tt412B.1.351.50.002398
S242L242del1cTTc-N312B.1.351.50.001799
S242L242del1cTtc-t112B.1.351.50.0006
S242L242delCTT---1111AY.260.000311
S242L242FCttTtt1111B.1.3910.012401
S242L242LctTctC911B.1.617.20.000034
S242L242LctTctA211B.1.617.20.000008
S242L242FCttTtt1010AY.430.000044
S242L242delCTT---1010B.1.177.860.001835
S242L242delCTT---1010P.1.150.002323
S242L242delCTT---99AY.1020.000239
S242L242FCttTtt99AY.1020.000239
S242L242ICttAtt99AY.1200.000335
S242L242delCTT---99AY.230.000628
S242L242delCTT---99AY.4.20.000195
S242L242delCTT---99B0.00115
S242L242LctTctC99B.1.258.170.000936
S242L242del2cTTc--79B.1.3510.000208
S242L242del2CTT--N29B.1.3510.000059
S242L242delCTT---99B.1.5250.001018
S242L242delCTT---99B.1.5540.039648
S242L242FCttTtt88AY.390.000198
S242L242delCTT---88B.1.177.730.00453
S242L242del1cTTc-N78B.1.3510.000208
S242L242del1ctTct-18B.1.3510.00003
S242L242HcTtcAt88B.1.351.20.002421
S242L242delCTT---88B.1.5950.002088
S242L242del2cTTc--77AY.290.00011
S242L242delCTT---77AY.390.000173
S242L242delCTT---77AY.50.000145
S242L242delCTT---77AY.560.011236
S242L242delCTT---77AY.750.000392
S242L242delCTT---77AY.98.10.000339
S242L242LctTctC67B.10.000055
S242L242LctTctA17B.10.000009
S242L242delCTT---77B.1.1.4320.008861
S242L242FCttTtt77B.1.1.5190.000278
S242L242ICttAtt77B.1.20.000062
S242L242QcTTcAA77B.1.351.20.002118
S242L242delCTT---77Q.10.000884
S242L242SCTtTCt56All0.000001
S242L242SCTTTCC16All0
S242L242FCttTtt66AY.230.000418
S242L242delCTT---66AY.330.000401
S242L242LctTctC56AY.40.000008
S242L242LctTctA16AY.40.000002
S242L242LctTctC55AY.290.000079
S242L242ICttAtt55AY.40.000008
S242L242delCTT---55AY.46.60.000361
S242L242delCTT---55AY.75.10.000902
S242L242FCttTtt55B.1.10.000091
S242L242del2cTTc--45B.1.1.70.000004
S242L242del2CTt--t15B.1.1.70.000001
S242L242del2CTT--N55B.1.351.30.004382
S242L242FCttTtt44AY.1000.000184
S242L242FCttTtt44AY.1100.000451
S242L242delCTT---44AY.1200.000149
S242L242delCTT---44AY.140.000352
S242L242delCTT---44AY.200.000155
S242L242ICttAtt44AY.430.000018
S242L242FCttTtt44AY.50.000083
S242L242ICttAtt44AY.50.000083
S242L242PcTtcCt44B.10.000037
S242L242LctTctC44B.1.10.000073
S242L242delCTT---44B.1.1.3890.024242
S242L242PcTtcCt44B.1.177.100.003512
S242L242ICttAtt44B.1.177.810.000757
S242L242delCTT---44B.1.2580.000266
S242L242PcTtcCt44B.1.351.30.003506
S242L242delCTT---44B.1.6090.001918
S242L242SCTtTCt44B.1.6200.003784
S242L242delCTT---44B.1.6210.000354
S242L242ICttAtt44P.1.80.019139
S242L242delCTT---44P.50.054795
S242L242delCTT---33AY.10.001187
S242L242delCTT---33AY.1000.000138
S242L242LctTctC33AY.1030.000019
S242L242delCTT---33AY.1060.001005
S242L242delCTT---33AY.116.10.000934
S242L242FCttTtt33AY.200.000117
S242L242delCTT---33AY.290.000047
S242L242delCTT---33AY.360.000445
S242L242HcTtcAt33AY.40.000005
S242L242delCTT---33AY.4.50.000322
S242L242delCTT---33AY.420.000121
S242L242delCTT---33AY.450.000365
S242L242FCttTtt33AY.470.000093
S242L242delCTT---33AY.470.000093
S242L242LctTctC33AY.780.004622
S242L242delCTT---33B.1.1.5190.000119
S242L242RcTtcGt23B.1.1.70.000002
S242L242RCTTAGA13B.1.1.70.000001
S242L242delCTT---33B.1.1700.012931
S242L242PcTtcCt33B.1.1770.00004
S242L242delCTT---33B.1.2400.000647
S242L242delCTT---33B.1.3360.007317
S242L242LctTctC33B.1.36.90.009646
S242L242FCttTtt33B.1.3960.002117
S242L242delCTT---33B.1.4160.003807
S242L242FCttTtt33B.1.4270.000151
S242L242delCTT---33B.1.4270.000151
S242L242FCttTtt33B.1.4290.000071
S242L242FCttTtt33B.1.5170.001281
S242L242delCTT---33B.1.5960.000261
S242L242delCTT---33B.1.617.10.000387
S242L242ICttAtt33B.1.617.20.000011
S242L242VCttGtt33B.1.617.20.000011
S242L242FCttTtt33P.1.120.001452
S242L242delCTT---220.111111
S242L242FCtTTtC120.055556
S242L242SCTtTCt120.055556
S242L242FCttTtt120.055556
S242L242SCTTTCC120.055556
S242L242ACTtGCt120.055556
S242L242VCtTGtC120.055556
S242L242ACTTGCC120.055556
S242L242VCttGtt120.055556
S242L242PcTtcCt120.055556
S242L242PcTTcCC120.055556
S242L242TCTtACt22All0
S242L242ACTtGCt12All0
S242L242ACTTGCC12All0
S242L242RcTtcGt22AY.1030.000012
S242L242delCTT---22AY.1050.001286
S242L242delCTT---22AY.1140.000462
S242L242delCTT---22AY.1180.000125
S242L242FCttTtt22AY.1200.000074
S242L242delCTT---22AY.130.000322
S242L242PcTtcCt22AY.23.10.000835
S242L242RcTtcGt22AY.250.000012
S242L242VCttGtt22AY.290.000032
S242L242FCttTtt22AY.30.00002
S242L242RcTtcGt22AY.30.00002
S242L242LctTctC22AY.30.00002
S242L242LctTctC22AY.3.10.000171
S242L242delCTT---22AY.3.10.000171
S242L242VCttGtt22AY.330.000134
S242L242del1cTtc-t12AY.40.000002
S242L242del1ctTct-12AY.40.000002
S242L242FCttTtt22AY.420.00008
S242L242LctTctA12AY.430.000004
S242L242LctTctC12AY.430.000004
S242L242del1Ctt-tt12AY.440.000006
S242L242del1cTtc-t12AY.440.000006
S242L242delCTT---22AY.460.000208
S242L242delCTT---22AY.5.30.000675
S242L242delCTT---22AY.630.000774
S242L242delCTT---22AY.700.000417
S242L242delCTT---22AY.950.001522
S242L242delCTT---22AY.980.000158
S242L242delCTT---22AY.99.20.000184
S242L242ICttAtt22B.1.10.000036
S242L242del1CtTNt-12B.1.10.000018
S242L242del1ctTct-12B.1.10.000018
S242L242delCTT---22B.1.1.2220.000408
S242L242delCTT---22B.1.1.280.000622
S242L242delCTT---22B.1.1.2940.002532
S242L242delCTT---22B.1.1.3180.000604
S242L242ICttAtt22B.1.1.3540.008772
S242L242delCTT---22B.1.1.3750.02381
S242L242delCTT---22B.1.1.5070.017391
S242L242delCTT---22B.1.1.5280.009615
S242L242FCttTtt22B.1.1600.000062
S242L242delCTT---22B.1.177.160.001329
S242L242delCTT---22B.1.177.20.009091
S242L242delCTT---22B.1.177.310.022989
S242L242delCTT---22B.1.177.540.001213
S242L242delCTT---22B.1.177.810.000379
S242L242LctTctC22B.1.20.000018
S242L242FCttTtt22B.1.2100.004264
S242L242FCttTtt22B.1.2210.000142
S242L242delCTT---22B.1.2430.000139
S242L242FCttTtt22B.1.2580.000133
S242L242LctTctC22B.1.2580.000133
S242L242delCTT---22B.1.258.110.000793
S242L242ICttAtt22B.1.258.170.000208
S242L242delCTT---22B.1.258.30.00335
S242L242delCTT---22B.1.351.10.076923
S242L242delCTT---22B.1.360.000292
S242L242LctTctA22B.1.438.10.000215
S242L242FCttTtt22B.1.466.20.000782
S242L242FCttTtt22B.1.5640.000852
S242L242delCTT---22B.1.5760.001813
S242L242FCttTtt22B.1.617.10.000258
S242L242RcTtcGt22B.1.617.20.000008
S242L242delCTT---22B.1.6230.001073
S242L242FCttTtt22B.1.6370.000146
S242L242delCTT---22B.1.6370.000146
S242L242delCTT---22C.160.002121
S242L242delCTT---22C.36.30.001134
S242L242HcTtcAt22C.370.000232
S242L242FCttTtt22D.20.00015
S242L242LctTctC22P.10.000032
S242L242delCTT---22P.1.120.000968
S242L242FCttTtt22P.1.140.000096
S242L242FCttTtt22P.1.170.000324
S242L242PcTtcCt22P.20.000373
S242L242delCTT---22Q.20.001227
S242L242delCTT---22Q.40.00091
S242L242FCttTtt22Q.80.00033
S242L242delCTT---22Q.80.00033
S242L242ICttAtt110.055556
S242L242NCTtAAt110.055556
S242L242HcTtcAt110.055556
S242L242LctTctC110.055556
S242L242delCTT---11A0.000387
S242L242PcTtcCt11A.10.000282
S242L242PcTtcCt11A.120.166667
S242L242delCTT---11A.190.009434
S242L242delCTT---11A.20.000662
S242L242PcTtcCt11A.2.40.003367
S242L242delCTT---11A.2.50.000499
S242L242FCttTtt11A.2.50.000499
S242L242FCttTtt11A.2.5.10.004808
S242L242delCTT---11A.230.010526
S242L242PcTtcCt11A.23.10.000704
S242L242delCTT---11A.270.001656
S242L242delCTT---11A.290.005319
S242L242delCTT---11AD.20.000219
S242L242CCTtTGt11All0
S242L242NCTtAAt11All0
S242L242YCTtTAt11All0
S242L242delCTT---11AU.30.00211
S242L242FCttTtt11AY.10.000396
S242L242LctTctA11AY.1000.000046
S242L242delCTT---11AY.1010.00049
S242L242LctTctC11AY.1020.000027
S242L242del1Ctt-tt11AY.1030.000006
S242L242ICttAtt11AY.1110.000183
S242L242delCTT---11AY.1110.000183
S242L242delCTT---11AY.1130.000142
S242L242delCTT---11AY.1170.000085
S242L242RcTtcGt11AY.1180.000063
S242L242del2cTTc--11AY.1180.000063
S242L242delCTT---11AY.1210.000135
S242L242delCTT---11AY.20.000356
S242L242ICttAtt11AY.200.000039
S242L242del1ctTct-11AY.230.00007
S242L242LctTctC11AY.230.00007
S242L242FCttTtt11AY.260.000028
S242L242ICttAtt11AY.280.00189
S242L242ICttAtt11AY.290.000016
S242L242PcTtcCt11AY.30.00001
S242L242ICttAtt11AY.30.00001
S242L242delCTT---11AY.300.000396
S242L242PcTtcCt11AY.330.000067
S242L242delCTT---11AY.370.000316
S242L242LctTctC11AY.390.000025
S242L242delCTT---11AY.39.10.00004
S242L242PcTtcCt11AY.40.000002
S242L242FCttTtt11AY.4.20.000022
S242L242delCTT---11AY.4.2.10.000149
S242L242FCttTtt11AY.4.50.000107
S242L242delCTT---11AY.400.000964
S242L242LctTctC11AY.410.000294
S242L242FCttTtt11AY.410.000294
S242L242RcTtcGt11AY.420.00004
S242L242TCTtACt11AY.430.000004
S242L242PcTtcCt11AY.440.000006
S242L242del2cTTc--11AY.440.000006
S242L242FCttTtt11AY.450.000122
S242L242delCTT---11AY.46.10.001027
S242L242FCttTtt11AY.46.20.000635
S242L242del2cTTc--11AY.46.60.000072
S242L242FCttTtt11AY.46.60.000072
S242L242RcTtcGt11AY.5.40.000277
S242L242delCTT---11AY.5.40.000277
S242L242FCttTtt11AY.500.000799
S242L242delCTT---11AY.500.000799
S242L242delCTT---11AY.510.000909
S242L242FCttTtt11AY.540.000095
S242L242delCTT---11AY.540.000095
S242L242delCTT---11AY.580.000907
S242L242delCTT---11AY.590.00053
S242L242LctTctA11AY.60.000041
S242L242delCTT---11AY.60.000041
S242L242FCttTtt11AY.610.000105
S242L242delCTT---11AY.610.000105
S242L242LctTctG11AY.640.000595
S242L242delCTT---11AY.650.000533
S242L242FCttTtt11AY.650.000533
S242L242delCTT---11AY.7.20.000559
S242L242delCTT---11AY.730.000665
S242L242FCttTtt11AY.740.000116
S242L242delCTT---11AY.740.000116
S242L242LctTctC11AY.750.000056
S242L242HcTtcAt11AY.75.10.00018
S242L242delCTT---11AY.780.001541
S242L242FCttTtt11AY.850.000427
S242L242PcTtcCt11AY.870.000833
S242L242delCTT---11AY.890.004902
S242L242LctTctG11AY.90.000068
S242L242delCTT---11AY.90.000068
S242L242FCttTtt11AY.9.10.000084
S242L242PcTtcCt11AY.9.10.000084
S242L242FCttTtt11AY.9.20.000037
S242L242delCTT---11AY.910.00073
S242L242FCttTtt11AY.960.002075
S242L242ICttAtt11AY.970.001701
S242L242LctTctC11B0.000128
S242L242ICttAtt11B.10.000009
S242L242VCttGtt11B.10.000009
S242L242del1Ctt-tt11B.10.000009
S242L242QcTTcAA11B.10.000009
S242L242del2CTT--N11B.1.10.000018
S242L242TCTtACt11B.1.10.000018
S242L242FCttTtt11B.1.1.1410.002012
S242L242delCTT---11B.1.1.1480.008772
S242L242delCTT---11B.1.1.1590.004673
S242L242del1cTtc-t11B.1.1.1610.003534
S242L242delCTT---11B.1.1.1920.002309
S242L242delCTT---11B.1.1.2140.000055
S242L242delCTT---11B.1.1.2170.003636
S242L242del2CTT--N11B.1.1.2360.006897
S242L242HcTtcAt11B.1.1.280.000311
S242L242delCTT---11B.1.1.2840.000107
S242L242delCTT---11B.1.1.2980.000862
S242L242delCTT---11B.1.1.3230.014085
S242L242delCTT---11B.1.1.3520.03125
S242L242VCttGtt11B.1.1.3540.004386
S242L242delCTT---11B.1.1.3560.008547
S242L242delCTT---11B.1.1.3690.000446
S242L242delCTT---11B.1.1.3720.000689
S242L242FCttTtt11B.1.1.3720.000689
S242L242delCTT---11B.1.1.390.00051
S242L242FCttTtt11B.1.1.390.00051
S242L242delCTT---11B.1.1.4090.002833
S242L242FCttTtt11B.1.1.4340.000349
S242L242delCTT---11B.1.1.4480.002033
S242L242delCTT---11B.1.1.4640.001473
S242L242delCTT---11B.1.1.4860.001577
S242L242FCttTtt11B.1.1.500.000679
S242L242LctTctC11B.1.1.5230.001563
S242L242HcTtcAt11B.1.1.70.000001
S242L242del1ctTct-11B.1.1.70.000001
S242L242delCTT---11B.1.110.30.000718
S242L242delCTT---11B.1.1110.001175
S242L242delCTT---11B.1.1390.000733
S242L242QcTTcAA11B.1.1570.002985
S242L242HcTtcAt11B.1.1600.000031
S242L242del2CTt--t11B.1.160.230.004831
S242L242delCTT---11B.1.160.70.002079
S242L242FCttTtt11B.1.177.180.00116
S242L242delCTT---11B.1.177.180.00116
S242L242delCTT---11B.1.177.280.007407
S242L242ICttAtt11B.1.177.390.015385
S242L242delCTT---11B.1.177.40.000211
S242L242delCTT---11B.1.177.440.000519
S242L242delCTT---11B.1.177.510.004566
S242L242FCttTtt11B.1.177.540.000606
S242L242delCTT---11B.1.177.600.000218
S242L242delCTT---11B.1.177.620.001192
S242L242delCTT---11B.1.177.690.001484
S242L242delCTT---11B.1.177.770.000726
S242L242delCTT---11B.1.177.820.000477
S242L242FCttTtt11B.1.177.830.001481
S242L242delCTT---11B.1.177.850.005435
S242L242delCTT---11B.1.177.870.000728
S242L242del1Ctt-tt11B.1.20.000009
S242L242PcTtcCt11B.1.20.000009
S242L242delCTT---11B.1.220.001318
S242L242FCttTtt11B.1.2320.000537
S242L242PcTtcCt11B.1.2340.000132
S242L242delCTT---11B.1.2370.004975
S242L242VCttGtt11B.1.2400.000216
S242L242ICttAtt11B.1.2430.00007
S242L242FCttTtt11B.1.2430.00007
S242L242RcTtcGt11B.1.2430.00007
S242L242FCttTtt11B.1.243.10.022222
S242L242PcTtcCt11B.1.2580.000067
S242L242delCTT---11B.1.258.140.00098
S242L242delCTT---11B.1.258.170.000104
S242L242FCttTtt11B.1.3200.001245
S242L242LctTctA11B.1.3510.00003
S242L242YCTtTAt11B.1.3510.00003
S242L242CCTtTGt11B.1.351.10.038462
S242L242del2cTTc--11B.1.351.50.0006
S242L242LctTctC11B.1.360.000146
S242L242delCTT---11B.1.36.200.016949
S242L242delCTT---11B.1.36.370.002778
S242L242delCTT---11B.1.3670.000792
S242L242FCttTtt11B.1.3690.000285
S242L242delCTT---11B.1.3690.000285
S242L242delCTT---11B.1.3750.00082
S242L242delCTT---11B.1.3990.001934
S242L242delCTT---11B.1.4000.000429
S242L242delCTT---11B.1.4090.000781
S242L242ICttAtt11B.1.4090.000781
S242L242FCttTtt11B.1.4150.014286
S242L242LctTctA11B.1.415.10.007576
S242L242delCTT---11B.1.416.10.001563
S242L242delCTT---11B.1.4170.028571
S242L242FCttTtt11B.1.4240.008065
S242L242ICttAtt11B.1.4290.000024
S242L242delCTT---11B.1.438.10.000107
S242L242delCTT---11B.1.4410.009615
S242L242delCTT---11B.1.4970.000315
S242L242FCttTtt11B.1.499.10.111111
S242L242delCTT---11B.1.5170.000427
S242L242FCttTtt11B.1.5250.000113
S242L242FCttTtt11B.1.5260.000024
S242L242ICttAtt11B.1.5260.000024
S242L242PcTtcCt11B.1.5300.007143
S242L242VCttGtt11B.1.5600.00463
S242L242delCTT---11B.1.5610.000397
S242L242delCTT---11B.1.5820.000491
S242L242PcTtcCt11B.1.5950.000261
S242L242FCttTtt11B.1.5960.000087
S242L242LctTctC11B.1.5960.000087
S242L242delCTT---11B.1.5990.00365
S242L242ICttAtt11B.1.6190.000871
S242L242FCttTtt11B.1.6200.000946
S242L242del2CTT--N11B.1.6200.000946
S242L242LctTctC11B.1.6210.000089
S242L242delCTT---11B.1.80.001972
S242L242ICttAtt11B.350.007812
S242L242FCttTtt11B.40.002208
S242L242delCTT---11B.60.00091
S242L242FCttTtt11B.600.015873
S242L242delCTT---11C.1.10.076923
S242L242delCTT---11C.1.20.004255
S242L242delCTT---11C.360.000911
S242L242RcTtcGt11D.20.000075
S242L242PcTtcCt11P.10.000016
S242L242ICttAtt11P.10.000016
S242L242delCTT---11P.1.10.000318
S242L242delCTT---11P.1.140.000048
S242L242FCttTtt11P.1.150.000232
S242L242delCTT---11P.1.60.001946
S242L242VCttGtt11Q.10.000126
S242L242delCTT---11Q.30.000145
S242L242LctTctA11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.