CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 241

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S241L241deldelTTA---3870838708122283-22285
S241L241LsynTtaCta6615350.8093822283-22285
S241L241LsynttAttG6611260.1906222283-22285
S241L241del1delttAtt-87820.94252922283-22285
S241L241del1delTtANt-8730.034482822283-22285
S241L241del1delTTa-Ca8710.011494322283-22285
S241L241del1delTTA-NN8710.011494322283-22285
S241L241FnonsynttAttT40380.9522283-22285
S241L241FnonsynttAttC4020.0522283-22285
S241L241del2delTTa--a39260.66666722283-22285
S241L241del2delTTA--N39110.28205122283-22285
S241L241del2deltTAt--3920.051282122283-22285
S241L241VnonsynTtaGta3030122283-22285
S241L241SnonsyntTatCa1515122283-22285
S241L241XnonsyntTatAa13100.76923122283-22285
S241L241XnonsyntTatGa1320.15384622283-22285
S241L241XnonsyntTAtAG1310.076923122283-22285
S241L241InonsynTtaAta12110.91666722283-22285
S241L241InonsynTtAAtT1210.083333322283-22285
S241L241KnonsynTTaAAa320.66666722283-22285
S241L241KnonsynTTAAAG310.33333322283-22285
S241L241MnonsynTtAAtG22122283-22285
S241L241NnonsynTTAAAT11122283-22285
S241L241YnonsyntTAtAT11122283-22285
S241L241QnonsynTTaCAa11122283-22285
S241L241WnonsyntTAtGG11122283-22285

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S241L241delTTA---3870838708All0.007403
S241L241delTTA---3021130211B.1.3510.898068
S241L241delTTA---31363136B.1.351.20.948865
S241L241delTTA---13121312B.1.351.50.786571
S241L241delTTA---10401040B.1.351.30.911481
S241L241delTTA---997997B.1.6200.943236
S241L241LTtaCta535661All0.000102
S241L241LttAttG126661All0.000024
S241L241delTTA---567567AY.40.000882
S241L241delTTA---303303B.10.002775
S241L241LTtaCta283283AY.46.60.020435
S241L241delTTA---267267B.1.1.70.000239
S241L241del1ttAtt-8287All0.000016
S241L241del1TtANt-387All0.000001
S241L241del1TTa-Ca187All0
S241L241del1TTA-NN187All0
S241L241del1ttAtt-7476B.1.351.50.044365
S241L241del1TtANt-276B.1.351.50.001199
S241L241LTtaCta5967B.1.1.70.000053
S241L241LttAttG867B.1.1.70.000007
S241L241LttAttG6162AY.390.001507
S241L241LTtaCta162AY.390.000025
S241L241delTTA---5050B.1.617.20.000188
S241L241FttAttT3840All0.000007
S241L241FttAttC240All0
S241L241delTTA---4040AY.430.000177
S241L241del2TTa--a2639All0.000005
S241L241del2TTA--N1139All0.000002
S241L241del2tTAt--239All0
S241L241delTTA---3939AY.250.000235
S241L241delTTA---3737B.1.10.000671
S241L241delTTA---3333AY.440.000201
S241L241LTtaCta3031AY.30.000298
S241L241LttAttG131AY.30.00001
S241L241VTtaGta3030All0.000006
S241L241delTTA---2828AY.1030.000174
S241L241LTtaCta2828AY.39.10.001109
S241L241delTTA---2525B.1.1600.00078
S241L241delTTA---2424B.1.20.000211
S241L241delTTA---2323AY.30.000229
S241L241delTTA---2323B.1.1770.000303
S241L241delTTA---2323B.1.5260.000541
S241L241delTTA---2323P.10.000362
S241L241delTTA---2222C.370.002553
S241L241delTTA---1919AY.1190.000671
S241L241delTTA---1919P.30.030303
S241L241delTTA---1818B.1.4290.000424
S241L241LTtaCta1717AY.1030.000106
S241L241delTTA---1717B.1.6360.114094
S241L241StTatCa1515All0.000003
S241L241XtTatAa1013All0.000002
S241L241XtTatGa213All0
S241L241XtTAtAG113All0
S241L241LTtaCta1313AY.750.000728
S241L241VTtaGta1313B.1.1770.000171
S241L241del2TTa--a813B.1.351.30.007011
S241L241del2TTA--N513B.1.351.30.004382
S241L241ITtaAta1112All0.000002
S241L241ITtAAtT112All0
S241L241delTTA---1212B.1.177.70.001978
S241L241LTtaCta1212B.1.2210.000852
S241L241delTTA---1111AY.260.000311
S241L241delTTA---1010B.1.177.860.001835
S241L241delTTA---1010P.1.150.002323
S241L241delTTA---99AY.230.000628
S241L241LttAttG99AY.290.000142
S241L241delTTA---99B0.00115
S241L241LttAttG79B.1.10.000127
S241L241LTtaCta29B.1.10.000036
S241L241del2TTa--a99B.1.351.50.005396
S241L241delTTA---99B.1.5250.001018
S241L241delTTA---99B.1.5540.039648
S241L241delTTA---88AY.1020.000212
S241L241LTtaCta78AY.430.000031
S241L241LttAttG18AY.430.000004
S241L241delTTA---88B.1.177.730.00453
S241L241LttAttG88B.1.2400.001725
S241L241LTtaCta57AY.420.000201
S241L241LttAttG27AY.420.00008
S241L241delTTA---77AY.50.000145
S241L241delTTA---77AY.560.011236
S241L241delTTA---77AY.750.000392
S241L241delTTA---77AY.98.10.000339
S241L241FttAttT77B.1.20.000062
S241L241LTtaCta67B.1.617.20.000023
S241L241LttAttG17B.1.617.20.000004
S241L241LttAttG46AY.250.000024
S241L241LTtaCta26AY.250.000012
S241L241delTTA---66AY.330.000401
S241L241delTTA---66AY.390.000148
S241L241XtTatAa66AY.40.000009
S241L241delTTA---66AY.4.20.00013
S241L241delTTA---66B.1.5950.001566
S241L241LTtaCta55A.2.5.10.024038
S241L241LTtaCta55AY.1000.00023
S241L241LTtaCta35AY.40.000005
S241L241LttAttG25AY.40.000003
S241L241delTTA---55AY.46.60.000361
S241L241LTtaCta55AY.540.000477
S241L241delTTA---55AY.75.10.000902
S241L241LTtaCta55AY.920.001436
S241L241VTtaGta55B.1.1.70.000004
S241L241FttAttT55B.1.1.70.000004
S241L241LTtaCta45B.1.1770.000053
S241L241LttAttG15B.1.1770.000013
S241L241del2TTa--a45B.1.3510.000119
S241L241del2TTA--N15B.1.3510.00003
S241L241delTTA---44AY.1200.000149
S241L241delTTA---44AY.140.000352
S241L241delTTA---44AY.200.000155
S241L241StTatCa44AY.40.000006
S241L241LTtaCta24AY.440.000012
S241L241LttAttG24AY.440.000012
S241L241LTtaCta44B.10.000037
S241L241delTTA---44B.1.1.4320.005063
S241L241delTTA---44B.1.2580.000266
S241L241delTTA---44B.1.6090.001918
S241L241delTTA---44B.1.6210.000354
S241L241delTTA---44P.50.054795
S241L241KTTaAAa23All0
S241L241KTTAAAG13All0
S241L241delTTA---33AY.10.001187
S241L241delTTA---33AY.1000.000138
S241L241delTTA---33AY.1060.001005
S241L241delTTA---33AY.116.10.000934
S241L241LTtaCta23AY.200.000078
S241L241LttAttG13AY.200.000039
S241L241delTTA---33AY.360.000445
S241L241VTtaGta33AY.40.000005
S241L241del2TTA--N13AY.40.000002
S241L241del2tTAt--13AY.40.000002
S241L241del2TTa--a13AY.40.000002
S241L241delTTA---33AY.4.50.000322
S241L241delTTA---33AY.420.000121
S241L241delTTA---33AY.450.000365
S241L241LttAttG33AY.680.000821
S241L241delTTA---33B.1.1.3890.018182
S241L241XtTatGa23B.1.1.70.000002
S241L241XtTatAa13B.1.1.70.000001
S241L241delTTA---33B.1.1700.012931
S241L241LTtaCta33B.1.20.000026
S241L241delTTA---33B.1.2210.000213
S241L241delTTA---33B.1.2400.000647
S241L241LTtaCta33B.1.2410.002435
S241L241del2TTa--a23B.1.351.20.000605
S241L241del2TTA--N13B.1.351.20.000303
S241L241ITtaAta33B.1.360.000438
S241L241delTTA---33B.1.4160.003807
S241L241delTTA---33B.1.4270.000151
S241L241LttAttG33B.1.4800.007463
S241L241delTTA---33B.1.5960.000261
S241L241LTtaCta33P.10.000047
S241L241delTTA---220.111111
S241L241ITtaAta120.055556
S241L241KTTaAAa120.055556
S241L241ITtAAtT120.055556
S241L241XtTAtAG120.055556
S241L241XtTatAa120.055556
S241L241KTTAAAG120.055556
S241L241MTtAAtG22All0
S241L241delTTA---22AY.1050.001286
S241L241delTTA---22AY.1140.000462
S241L241delTTA---22AY.1180.000125
S241L241delTTA---22AY.130.000322
S241L241del1TTA-NN12AY.250.000006
S241L241del1ttAtt-12AY.250.000006
S241L241LTtaCta12AY.260.000028
S241L241LttAttG12AY.260.000028
S241L241del1ttAtt-22AY.290.000032
S241L241FttAttT22AY.30.00002
S241L241delTTA---22AY.3.10.000171
S241L241ITtaAta22AY.360.000296
S241L241LttAttG12AY.4.20.000022
S241L241LTtaCta12AY.4.20.000022
S241L241StTatCa22AY.430.000009
S241L241VTtaGta22AY.430.000009
S241L241delTTA---22AY.460.000208
S241L241delTTA---22AY.470.000062
S241L241LTtaCta22AY.50.000041
S241L241delTTA---22AY.5.30.000675
S241L241LTtaCta22AY.60.000082
S241L241LTtaCta22AY.630.000774
S241L241delTTA---22AY.630.000774
S241L241delTTA---22AY.700.000417
S241L241delTTA---22AY.950.001522
S241L241delTTA---22AY.980.000158
S241L241delTTA---22AY.99.20.000184
S241L241ITtaAta22B.10.000018
S241L241FttAttT22B.10.000018
S241L241delTTA---22B.1.1.2220.000408
S241L241delTTA---22B.1.1.280.000622
S241L241delTTA---22B.1.1.3180.000604
S241L241delTTA---22B.1.1.3750.02381
S241L241FttAttT22B.1.1.4320.002532
S241L241delTTA---22B.1.1.5070.017391
S241L241delTTA---22B.1.1.5190.000079
S241L241FttAttT22B.1.1.5190.000079
S241L241delTTA---22B.1.1.5280.009615
S241L241LTtaCta12B.1.1600.000031
S241L241LttAttG12B.1.1600.000031
S241L241delTTA---22B.1.177.20.009091
S241L241delTTA---22B.1.177.310.022989
S241L241delTTA---22B.1.177.540.001213
S241L241LTtaCta22B.1.177.600.000437
S241L241delTTA---22B.1.177.810.000379
S241L241delTTA---22B.1.258.110.000793
S241L241delTTA---22B.1.258.30.00335
S241L241delTTA---22B.1.3360.004878
S241L241del1ttAtt-22B.1.3510.000059
S241L241delTTA---22B.1.351.10.076923
S241L241LTtaCta22B.1.5260.000047
S241L241delTTA---22B.1.617.10.000258
S241L241FttAttC12B.1.617.20.000004
S241L241FttAttT12B.1.617.20.000004
S241L241delTTA---22B.1.6230.001073
S241L241delTTA---22B.1.6370.000146
S241L241delTTA---22C.160.002121
S241L241delTTA---22C.36.30.001134
S241L241delTTA---22P.1.120.000968
S241L241delTTA---22Q.10.000253
S241L241LttAttG110.055556
S241L241YtTAtAT110.055556
S241L241MTtAAtG110.055556
S241L241NTTAAAT110.055556
S241L241FttAttT110.055556
S241L241delTTA---11A0.000387
S241L241delTTA---11A.20.000662
S241L241LttAttG11A.20.000662
S241L241delTTA---11A.2.50.000499
S241L241LttAttG11A.2.5.20.001572
S241L241delTTA---11A.230.010526
S241L241delTTA---11A.270.001656
S241L241delTTA---11A.290.005319
S241L241FttAttT11A.30.002096
S241L241delTTA---11AD.20.000219
S241L241QTTaCAa11All0
S241L241YtTAtAT11All0
S241L241NTTAAAT11All0
S241L241WtTAtGG11All0
S241L241delTTA---11AU.30.00211
S241L241del2TTA--N11AY.1000.000046
S241L241delTTA---11AY.1010.00049
S241L241LttAttG11AY.1020.000027
S241L241StTatCa11AY.1030.000006
S241L241delTTA---11AY.1110.000183
S241L241delTTA---11AY.1130.000142
S241L241delTTA---11AY.1170.000085
S241L241delTTA---11AY.1210.000135
S241L241delTTA---11AY.20.000356
S241L241StTatCa11AY.23.10.000417
S241L241delTTA---11AY.240.000431
S241L241ITtaAta11AY.250.000006
S241L241del2tTAt--11AY.250.000006
S241L241LTtaCta11AY.280.00189
S241L241delTTA---11AY.290.000016
S241L241LttAttG11AY.29.10.000221
S241L241delTTA---11AY.300.000396
S241L241LTtaCta11AY.350.000233
S241L241delTTA---11AY.370.000316
S241L241FttAttT11AY.390.000025
S241L241delTTA---11AY.39.10.00004
S241L241FttAttT11AY.40.000002
S241L241delTTA---11AY.4.2.10.000149
S241L241delTTA---11AY.400.000964
S241L241XtTatAa11AY.420.00004
S241L241KTTaAAa11AY.420.00004
S241L241del1TTa-Ca11AY.430.000004
S241L241QTTaCAa11AY.430.000004
S241L241FttAttT11AY.440.000006
S241L241StTatCa11AY.440.000006
S241L241delTTA---11AY.46.10.001027
S241L241StTatCa11AY.46.50.000198
S241L241FttAttT11AY.470.000031
S241L241XtTatAa11AY.50.000021
S241L241delTTA---11AY.5.40.000277
S241L241delTTA---11AY.500.000799
S241L241delTTA---11AY.510.000909
S241L241delTTA---11AY.540.000095
S241L241LTtaCta11AY.580.000907
S241L241delTTA---11AY.580.000907
S241L241LttAttG11AY.590.00053
S241L241delTTA---11AY.590.00053
S241L241delTTA---11AY.60.000041
S241L241LTtaCta11AY.610.000105
S241L241delTTA---11AY.610.000105
S241L241delTTA---11AY.650.000533
S241L241FttAttT11AY.680.000274
S241L241LTtaCta11AY.7.10.000113
S241L241delTTA---11AY.7.20.000559
S241L241delTTA---11AY.730.000665
S241L241delTTA---11AY.740.000116
S241L241delTTA---11AY.780.001541
S241L241delTTA---11AY.890.004902
S241L241delTTA---11AY.90.000068
S241L241LTtaCta11AY.9.20.000037
S241L241delTTA---11AY.910.00073
S241L241StTatCa11AY.98.10.000048
S241L241del2TTA--N11B.10.000009
S241L241StTatCa11B.10.000009
S241L241VTtaGta11B.10.000009
S241L241ITtaAta11B.1.10.000018
S241L241delTTA---11B.1.1.1480.008772
S241L241delTTA---11B.1.1.1590.004673
S241L241delTTA---11B.1.1.1920.002309
S241L241LTtaCta11B.1.1.1940.00495
S241L241delTTA---11B.1.1.2140.000055
S241L241delTTA---11B.1.1.2170.003636
S241L241LTtaCta11B.1.1.2200.001859
S241L241delTTA---11B.1.1.2360.006897
S241L241delTTA---11B.1.1.2840.000107
S241L241delTTA---11B.1.1.2980.000862
S241L241delTTA---11B.1.1.3230.014085
S241L241FttAttT11B.1.1.3520.03125
S241L241delTTA---11B.1.1.3560.008547
S241L241delTTA---11B.1.1.3690.000446
S241L241delTTA---11B.1.1.3720.000689
S241L241FttAttT11B.1.1.3890.006061
S241L241delTTA---11B.1.1.390.00051
S241L241delTTA---11B.1.1.4090.002833
S241L241del1ttAtt-11B.1.1.4320.001266
S241L241delTTA---11B.1.1.4480.002033
S241L241delTTA---11B.1.1.4640.001473
S241L241delTTA---11B.1.1.4860.001577
S241L241LttAttG11B.1.1.50.008333
S241L241LTtaCta11B.1.1.5190.00004
S241L241ITtaAta11B.1.1.70.000001
S241L241del1ttAtt-11B.1.1.70.000001
S241L241VTtaGta11B.1.1.700.000341
S241L241delTTA---11B.1.110.30.000718
S241L241delTTA---11B.1.1110.001175
S241L241delTTA---11B.1.1390.000733
S241L241WtTAtGG11B.1.1570.002985
S241L241FttAttT11B.1.1600.000031
S241L241delTTA---11B.1.160.230.004831
S241L241delTTA---11B.1.160.70.002079
S241L241delTTA---11B.1.177.160.000664
S241L241delTTA---11B.1.177.180.00116
S241L241StTatCa11B.1.177.40.000211
S241L241delTTA---11B.1.177.40.000211
S241L241delTTA---11B.1.177.510.004566
S241L241delTTA---11B.1.177.600.000218
S241L241delTTA---11B.1.177.620.001192
S241L241delTTA---11B.1.177.690.001484
S241L241delTTA---11B.1.177.770.000726
S241L241delTTA---11B.1.177.820.000477
S241L241delTTA---11B.1.177.850.005435
S241L241delTTA---11B.1.177.870.000728
S241L241del2TTa--a11B.1.20.000009
S241L241StTatCa11B.1.2060.000816
S241L241delTTA---11B.1.220.001318
S241L241delTTA---11B.1.2370.004975
S241L241delTTA---11B.1.2430.00007
S241L241delTTA---11B.1.258.140.00098
S241L241delTTA---11B.1.258.170.000104
S241L241FttAttT11B.1.3110.000275
S241L241VTtaGta11B.1.3110.000275
S241L241VTtaGta11B.1.3320.003497
S241L241FttAttT11B.1.3510.00003
S241L241MTtAAtG11B.1.351.10.038462
S241L241delTTA---11B.1.360.000146
S241L241FttAttT11B.1.360.000146
S241L241delTTA---11B.1.36.200.016949
S241L241VTtaGta11B.1.36.290.000517
S241L241delTTA---11B.1.36.370.002778
S241L241delTTA---11B.1.3670.000792
S241L241delTTA---11B.1.3690.000285
S241L241delTTA---11B.1.3750.00082
S241L241delTTA---11B.1.3990.001934
S241L241FttAttT11B.1.3990.001934
S241L241delTTA---11B.1.4000.000429
S241L241delTTA---11B.1.4090.000781
S241L241del2TTa--a11B.1.4090.000781
S241L241delTTA---11B.1.416.10.001563
S241L241delTTA---11B.1.4170.028571
S241L241LttAttG11B.1.4290.000024
S241L241delTTA---11B.1.438.10.000107
S241L241delTTA---11B.1.4410.009615
S241L241StTatCa11B.1.4560.003268
S241L241delTTA---11B.1.4970.000315
S241L241delTTA---11B.1.5170.000427
S241L241FttAttT11B.1.5250.000113
S241L241delTTA---11B.1.5610.000397
S241L241FttAttT11B.1.5760.000907
S241L241delTTA---11B.1.5760.000907
S241L241LTtaCta11B.1.5820.000491
S241L241delTTA---11B.1.5820.000491
S241L241delTTA---11B.1.5990.00365
S241L241LTtaCta11B.1.6090.000479
S241L241del2TTA--N11B.1.6200.000946
S241L241del1TtANt-11B.1.6200.000946
S241L241LTtaCta11B.1.6210.000089
S241L241LTtaCta11B.1.6370.000073
S241L241delTTA---11B.1.80.001972
S241L241VTtaGta11B.400.000364
S241L241LttAttG11B.400.000364
S241L241delTTA---11B.60.00091
S241L241FttAttC11B.600.015873
S241L241delTTA---11C.1.10.076923
S241L241delTTA---11C.1.20.004255
S241L241delTTA---11C.360.000911
S241L241VTtaGta11P.10.000016
S241L241del1ttAtt-11P.10.000016
S241L241delTTA---11P.1.10.000318
S241L241delTTA---11P.1.140.000048
S241L241delTTA---11P.1.60.001946
S241L241delTTA---11Q.20.000613
S241L241delTTA---11Q.30.000145
S241L241delTTA---11Q.80.000165
S241L241FttAttT11Q.80.000165