CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 233

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S233I233VnonsynAttGtt17191719122259-22261
S233I233IsynatTatC5255130.97714322259-22261
S233I233IsynatTatA525120.022857122259-22261
S233I233deldelATT---113113122259-22261
S233I233LnonsynAttCtt78730.93589722259-22261
S233I233LnonsynAtTCtG7810.012820522259-22261
S233I233LnonsynAtTCtC7810.012820522259-22261
S233I233LnonsynAtTTtG7810.012820522259-22261
S233I233LnonsynAtTCtA7810.012820522259-22261
S233I233LnonsynAtTTtA7810.012820522259-22261
S233I233TnonsynaTtaCt41330.80487822259-22261
S233I233TnonsynaTTaCC4170.17073222259-22261
S233I233TnonsynaTTaCG4110.024390222259-22261
S233I233SnonsynaTtaGt16100.62522259-22261
S233I233SnonsynATtTCt1640.2522259-22261
S233I233SnonsynaTTaGC1620.12522259-22261
S233I233NnonsynaTtaAt1111122259-22261
S233I233FnonsynAttTtt980.88888922259-22261
S233I233FnonsynAtTTtC910.11111122259-22261
S233I233MnonsynatTatG88122259-22261
S233I233del1delAtt-tt630.522259-22261
S233I233del1delaTta-t620.33333322259-22261
S233I233del1delATT-NN610.16666722259-22261
S233I233RnonsynaTTaGA520.422259-22261
S233I233RnonsynATTCGA510.222259-22261
S233I233RnonsynaTTaGG510.222259-22261
S233I233RnonsynATtCGt510.222259-22261
S233I233del2delATT--N420.522259-22261
S233I233del2delaTTa--410.2522259-22261
S233I233del2delATt--t410.2522259-22261
S233I233PnonsynATtCCt210.522259-22261
S233I233PnonsynATTCCG210.522259-22261
S233I233KnonsynaTTaAG11122259-22261

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S233I233VAttGtt17191719All0.000329
S233I233VAttGtt722722B.1.1.3770.997238
S233I233IatTatC513525All0.000098
S233I233IatTatA12525All0.000002
S233I233VAttGtt391391B.1.438.10.041939
S233I233IatTatC113114B.1.1.70.000101
S233I233IatTatA1114B.1.1.70.000001
S233I233delATT---113113All0.000022
S233I233IatTatC108110B.1.617.20.000407
S233I233IatTatA2110B.1.617.20.000008
S233I233VAttGtt8282B.1.1.70.000073
S233I233LAttCtt7378All0.000014
S233I233LAtTCtC178All0
S233I233LAtTTtA178All0
S233I233LAtTCtG178All0
S233I233LAtTTtG178All0
S233I233LAtTCtA178All0
S233I233IatTatC7171AY.1020.001882
S233I233VAttGtt6868AY.40.000106
S233I233TaTtaCt3341All0.000006
S233I233TaTTaCC741All0.000001
S233I233TaTTaCG141All0
S233I233LAttCtt3737P.10.000583
S233I233VAttGtt3535AY.440.000213
S233I233VAttGtt3434B.1.617.20.000128
S233I233VAttGtt3131B.1.258.170.003223
S233I233VAttGtt2929AY.250.000174
S233I233VAttGtt2424B.1.2390.029304
S233I233VAttGtt2323B.1.3110.006315
S233I233delATT---2222B.1.1.70.00002
S233I233IatTatC2121AY.390.000519
S233I233IatTatC2020B.1.20.000176
S233I233VAttGtt1818B.1.3400.077253
S233I233SaTtaGt1016All0.000002
S233I233SATtTCt416All0.000001
S233I233SaTTaGC216All0
S233I233IatTatC1616AY.1190.000565
S233I233IatTatC1515AY.50.00031
S233I233IatTatC1314AY.430.000058
S233I233IatTatA114AY.430.000004
S233I233VAttGtt1414B.1.5430.14
S233I233VAttGtt1212AY.290.000189
S233I233VAttGtt1212AY.430.000053
S233I233VAttGtt1212B.10.00011
S233I233VAttGtt1212B.1.3510.000357
S233I233NaTtaAt1111All0.000002
S233I233IatTatC1111AY.740.001272
S233I233TaTtaCt611B.1.1.70.000005
S233I233TaTTaCC511B.1.1.70.000004
S233I233IatTatC910AY.250.000054
S233I233IatTatA110AY.250.000006
S233I233VAttGtt1010AY.520.008143
S233I233VAttGtt1010B.1.10.000181
S233I233delATT---1010P.1.150.002323
S233I233FAttTtt89All0.000002
S233I233FAtTTtC19All0
S233I233MatTatG88All0.000002
S233I233LAttCtt88B.1.1.280.00249
S233I233VAttGtt88B.1.1770.000105
S233I233IatTatC57AY.1030.000031
S233I233IatTatA27AY.1030.000012
S233I233LAttCtt67AY.300.002374
S233I233LAtTCtG17AY.300.000396
S233I233delATT---77AY.430.000031
S233I233IatTatC67AY.440.000037
S233I233IatTatA17AY.440.000006
S233I233IatTatC77AY.470.000218
S233I233delATT---77B.10.000064
S233I233delATT---77B.1.617.20.000026
S233I233del1Att-tt36All0.000001
S233I233del1aTta-t26All0
S233I233del1ATT-NN16All0
S233I233VAttGtt66AY.1030.000037
S233I233IatTatC66AY.1200.000223
S233I233VAttGtt66AY.200.000233
S233I233VAttGtt66AY.60.000247
S233I233VAttGtt66AY.98.10.000291
S233I233delATT---66B.1.1770.000079
S233I233LAttCtt36B.1.617.20.000011
S233I233LAtTCtA16B.1.617.20.000004
S233I233LAtTTtA16B.1.617.20.000004
S233I233LAtTCtC16B.1.617.20.000004
S233I233RaTTaGA25All0
S233I233RaTTaGG15All0
S233I233RATtCGt15All0
S233I233RATTCGA15All0
S233I233VAttGtt55AY.1190.000177
S233I233VAttGtt55AY.260.000142
S233I233IatTatC55AY.30.00005
S233I233VAttGtt55AY.330.000334
S233I233IatTatC55AY.40.000008
S233I233IatTatC55AY.460.00052
S233I233VAttGtt55AY.470.000156
S233I233VAttGtt55B.1.20.000044
S233I233NaTtaAt55B.1.3510.000149
S233I233IatTatC55B.1.5640.002129
S233I233VAttGtt55B.1.6370.000365
S233I233TaTTaCC240.111111
S233I233TaTtaCt240.111111
S233I233del2ATT--N24All0
S233I233del2ATt--t14All0
S233I233del2aTTa--14All0
S233I233VAttGtt44AY.1020.000106
S233I233VAttGtt44AY.1170.000338
S233I233VAttGtt44AY.1210.000541
S233I233VAttGtt44AY.30.00004
S233I233VAttGtt44AY.3.10.000341
S233I233VAttGtt44AY.50.000083
S233I233IatTatC44B.10.000037
S233I233IatTatC44B.1.1770.000053
S233I233IatTatC44B.1.177.450.001525
S233I233VAttGtt44B.1.214.20.002398
S233I233IatTatC44B.1.4290.000094
S233I233VAttGtt44B.1.617.10.000516
S233I233IatTatC44B.1.6370.000292
S233I233IatTatC44B.400.001457
S233I233delATT---44C.370.000464
S233I233delATT---44P.10.000063
S233I233delATT---33AY.1000.000138
S233I233VAttGtt33AY.1000.000138
S233I233IatTatC33AY.1110.000549
S233I233SATtTCt33AY.1190.000106
S233I233IatTatC33AY.1210.000406
S233I233delATT---33AY.250.000018
S233I233TaTtaCt33AY.30.00003
S233I233delATT---33AY.4.50.000322
S233I233TaTtaCt33AY.440.000018
S233I233SaTtaGt13AY.440.000006
S233I233SATtTCt13AY.440.000006
S233I233SaTTaGC13AY.440.000006
S233I233IatTatC33AY.450.000365
S233I233VAttGtt33AY.5.30.001012
S233I233IatTatA23AY.690.000373
S233I233IatTatC13AY.690.000187
S233I233SaTtaGt23B.1.1.70.000002
S233I233SaTTaGC13B.1.1.70.000001
S233I233VAttGtt33B.1.1600.000094
S233I233VAttGtt33B.1.177.810.000568
S233I233IatTatC33B.1.243.10.066667
S233I233delATT---33B.1.3510.000089
S233I233VAttGtt33B.1.5260.000071
S233I233del1aTta-t23B.1.617.10.000258
S233I233del1Att-tt13B.1.617.10.000129
S233I233FAttTtt23B.1.617.20.000008
S233I233FAtTTtC13B.1.617.20.000004
S233I233RATtCGt13B.1.617.20.000004
S233I233RaTTaGA13B.1.617.20.000004
S233I233RATTCGA13B.1.617.20.000004
S233I233VAttGtt33B.1.6200.002838
S233I233LAttCtt33P.1.170.000485
S233I233LAttCtt33P.20.00056
S233I233IatTatC220.111111
S233I233PATTCCG12All0
S233I233PATtCCt12All0
S233I233VAttGtt22AY.10.000791
S233I233TaTtaCt22AY.1130.000285
S233I233IatTatC22AY.1160.000574
S233I233VAttGtt22AY.1180.000125
S233I233VAttGtt22AY.160.000759
S233I233IatTatC22AY.200.000078
S233I233VAttGtt22AY.270.000129
S233I233IatTatC22AY.290.000032
S233I233TaTTaCG12AY.300.000396
S233I233PATTCCG12AY.300.000396
S233I233TaTtaCt12AY.300.000396
S233I233PATtCCt12AY.300.000396
S233I233TaTtaCt22AY.390.000049
S233I233VAttGtt22AY.390.000049
S233I233delATT---22AY.40.000003
S233I233IatTatC22AY.46.20.001271
S233I233IatTatC22AY.46.40.000329
S233I233VAttGtt22AY.540.000191
S233I233SaTtaGt22AY.690.000373
S233I233LAttCtt22AY.850.000854
S233I233IatTatC22AY.850.000854
S233I233delATT---22AY.950.001522
S233I233LAttCtt22B.10.000018
S233I233LAttCtt22B.1.1.330.000842
S233I233VAttGtt22B.1.1.410.012658
S233I233VAttGtt22B.1.177.210.000153
S233I233VAttGtt22B.1.177.650.001331
S233I233MatTatG22B.1.36.170.000988
S233I233VAttGtt22B.1.5610.000794
S233I233VAttGtt22B.1.5770.001375
S233I233IatTatA22B.1.6280.000705
S233I233LAttCtt22B.1.910.004149
S233I233VAttGtt22C.370.000232
S233I233IatTatC22C.370.000232
S233I233VAttGtt22P.10.000032
S233I233LAttCtt22P.1.20.002312
S233I233VAttGtt22Q.80.00033
S233I233FAttTtt110.055556
S233I233delATT---11A.2.50.000499
S233I233KaTTaAG11All0
S233I233delATT---11AY.1010.00049
S233I233delATT---11AY.1020.000027
S233I233TaTtaCt11AY.1030.000006
S233I233LAttCtt11AY.1030.000006
S233I233IatTatC11AY.1060.000335
S233I233LAtTTtG11AY.1060.000335
S233I233VAttGtt11AY.1130.000142
S233I233VAttGtt11AY.1140.000231
S233I233VAttGtt11AY.116.10.000311
S233I233delATT---11AY.1180.000063
S233I233LAttCtt11AY.1190.000035
S233I233NaTtaAt11AY.1190.000035
S233I233delATT---11AY.1200.000037
S233I233IatTatC11AY.120.10.000321
S233I233VAttGtt11AY.130.000161
S233I233SaTtaGt11AY.160.00038
S233I233VAttGtt11AY.190.00114
S233I233NaTtaAt11AY.230.00007
S233I233IatTatC11AY.230.00007
S233I233TaTtaCt11AY.23.10.000417
S233I233IatTatC11AY.23.10.000417
S233I233NaTtaAt11AY.23.10.000417
S233I233delATT---11AY.240.000431
S233I233del2aTTa--11AY.250.000006
S233I233TaTtaCt11AY.250.000006
S233I233TaTtaCt11AY.270.000065
S233I233TaTtaCt11AY.290.000016
S233I233VAttGtt11AY.29.10.000221
S233I233VAttGtt11AY.300.000396
S233I233MatTatG11AY.300.000396
S233I233IatTatC11AY.330.000067
S233I233SaTtaGt11AY.390.000025
S233I233VAttGtt11AY.39.10.00004
S233I233TaTtaCt11AY.40.000002
S233I233FAttTtt11AY.40.000002
S233I233del2ATT--N11AY.40.000002
S233I233VAttGtt11AY.4.20.000022
S233I233FAttTtt11AY.4.50.000107
S233I233KaTTaAG11AY.420.00004
S233I233VAttGtt11AY.420.00004
S233I233del1Att-tt11AY.430.000004
S233I233delATT---11AY.440.000006
S233I233TaTtaCt11AY.450.000122
S233I233VAttGtt11AY.480.000465
S233I233delATT---11AY.50.000021
S233I233VAttGtt11AY.510.000909
S233I233delATT---11AY.610.000105
S233I233NaTtaAt11AY.620.000436
S233I233delATT---11AY.650.000533
S233I233VAttGtt11AY.670.000464
S233I233IatTatC11AY.7.20.000559
S233I233VAttGtt11AY.820.001357
S233I233IatTatC11AY.840.000437
S233I233delATT---11AY.90.000068
S233I233IatTatC11AY.9.20.000037
S233I233MatTatG11AY.9.20.000037
S233I233VAttGtt11AY.950.000761
S233I233delATT---11AY.960.002075
S233I233delATT---11AY.980.000079
S233I233IatTatC11AY.98.10.000048
S233I233del1ATT-NN11B.10.000009
S233I233del2ATT--N11B.10.000009
S233I233MatTatG11B.1.10.000018
S233I233TaTtaCt11B.1.10.000018
S233I233delATT---11B.1.10.000018
S233I233VAttGtt11B.1.1.1530.001095
S233I233delATT---11B.1.1.1590.004673
S233I233NaTtaAt11B.1.1.2200.001859
S233I233VAttGtt11B.1.1.2220.000204
S233I233VAttGtt11B.1.1.2400.004695
S233I233VAttGtt11B.1.1.2750.011236
S233I233IatTatC11B.1.1.3480.000796
S233I233delATT---11B.1.1.3770.001381
S233I233del1Att-tt11B.1.1.3770.001381
S233I233VAttGtt11B.1.1.4640.001473
S233I233VAttGtt11B.1.1.5190.00004
S233I233VAttGtt11B.1.1.5230.001563
S233I233VAttGtt11B.1.1.560.017857
S233I233VAttGtt11B.1.1.630.000386
S233I233RaTTaGG11B.1.1.70.000001
S233I233FAttTtt11B.1.1.70.000001
S233I233MatTatG11B.1.1.70.000001
S233I233VAttGtt11B.1.1.830.00271
S233I233delATT---11B.1.1390.000733
S233I233FAttTtt11B.1.1600.000031
S233I233VAttGtt11B.1.160.140.002119
S233I233delATT---11B.1.160.230.004831
S233I233VAttGtt11B.1.160.270.015152
S233I233IatTatC11B.1.1700.00431
S233I233TaTtaCt11B.1.1770.000013
S233I233VAttGtt11B.1.177.160.000664
S233I233delATT---11B.1.177.620.001192
S233I233delATT---11B.1.177.630.002703
S233I233delATT---11B.1.177.690.001484
S233I233TaTtaCt11B.1.20.000009
S233I233delATT---11B.1.230.006061
S233I233SaTtaGt11B.1.2340.000132
S233I233VAttGtt11B.1.2410.000812
S233I233VAttGtt11B.1.2430.00007
S233I233IatTatC11B.1.2580.000067
S233I233SaTtaGt11B.1.3330.010526
S233I233RaTTaGA11B.1.3330.010526
S233I233TaTtaCt11B.1.3330.010526
S233I233VAttGtt11B.1.360.000146
S233I233VAttGtt11B.1.36.360.000602
S233I233VAttGtt11B.1.36.80.001
S233I233VAttGtt11B.1.4000.000429
S233I233VAttGtt11B.1.4040.001302
S233I233IatTatC11B.1.416.10.001563
S233I233VAttGtt11B.1.4270.00005
S233I233MatTatG11B.1.4290.000024
S233I233VAttGtt11B.1.4290.000024
S233I233IatTatC11B.1.5090.000866
S233I233IatTatC11B.1.5240.001406
S233I233delATT---11B.1.5250.000113
S233I233delATT---11B.1.5610.000397
S233I233IatTatC11B.1.5960.000087
S233I233TaTtaCt11B.1.5960.000087
S233I233delATT---11B.1.617.10.000129
S233I233TaTtaCt11B.1.617.10.000129
S233I233NaTtaAt11B.1.617.20.000004
S233I233SaTtaGt11B.1.617.20.000004
S233I233del2ATt--t11B.1.617.30.002985
S233I233delATT---11B.1.6200.000946
S233I233delATT---11B.1.6210.000089
S233I233MatTatG11B.1.6290.013333
S233I233delATT---11C.37.10.002618
S233I233FAttTtt11D.20.000075
S233I233TaTtaCt11D.20.000075
S233I233VAttGtt11D.20.000075
S233I233delATT---11P.1.10.000318
S233I233VAttGtt11P.1.150.000232
S233I233IatTatC11P.1.170.000162
S233I233LAttCtt11P.70.004367
S233I233VAttGtt11Q.10.000126
S233I233delATT---11Q.10.000126
S233I233IatTatC11Q.20.000613
S233I233IatTatC11Q.80.000165