CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 230 & Codon = ccC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S230P230PsynccAccC678420.061946922250-22252

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S230P230PccAccC42678All0.000008
S230P230PccAccC1233P.10.000189
S230P230PccAccC524B.1.1.70.000004
S230P230PccAccC418AY.40.000006
S230P230PccAccC111B.1.617.20.000004
S230P230PccAccC17B.10.000009
S230P230PccAccC44AY.30.00004
S230P230PccAccC33AY.1080.003308
S230P230PccAccC23AY.1190.000071
S230P230PccAccC13B.1.1.280.000311
S230P230PccAccC23B.1.6370.000146
S230P230PccAccC120.055556
S230P230PccAccC22AY.1050.001286
S230P230PccAccC22B.1.1.330.000842
S230P230PccAccC12B.1.1770.000013
S230P230PccAccC12B.1.910.002075

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.