CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 230

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S230P230PsynccAccT6785150.75958722250-22252
S230P230PsynccAccG6781210.17846622250-22252
S230P230PsynccAccC678420.061946922250-22252
S230P230deldelCCA---137137122250-22252
S230P230LnonsyncCacTa84830.98809522250-22252
S230P230LnonsyncCAcTT8410.011904822250-22252
S230P230QnonsyncCacAa64560.87522250-22252
S230P230QnonsyncCAcAG6480.12522250-22252
S230P230SnonsynCcaTca57560.98245622250-22252
S230P230SnonsynCcATcT5710.017543922250-22252
S230P230TnonsynCcAAcG50250.522250-22252
S230P230TnonsynCcaAca50140.2822250-22252
S230P230TnonsynCcAAcC50110.2222250-22252
S230P230HnonsyncCAcAC1313122250-22252
S230P230KnonsynCCAAAG88122250-22252
S230P230NnonsynCCAAAC88122250-22252
S230P230AnonsynCcaGca750.71428622250-22252
S230P230AnonsynCcAGcC710.14285722250-22252
S230P230AnonsynCcAGcT710.14285722250-22252
S230P230YnonsynCCATAT210.522250-22252
S230P230VnonsynCCAGTC210.522250-22252
S230P230VnonsynCCAGTT210.522250-22252
S230P230del1delCca-ca210.522250-22252
S230P230del1delCCa-Ta210.522250-22252
S230P230YnonsynCCATAC210.522250-22252
S230P230FnonsynCCATTC11122250-22252
S230P230DnonsynCCAGAC11122250-22252

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S230P230PccAccT515678All0.000098
S230P230PccAccG121678All0.000023
S230P230PccAccC42678All0.000008
S230P230PccAccT238238B.1.221.40.991667
S230P230delCCA---137137All0.000026
S230P230PccAccT111111B.1.2210.007885
S230P230LcCacTa8384All0.000016
S230P230LcCAcTT184All0
S230P230QcCacAa5664All0.000011
S230P230QcCAcAG864All0.000002
S230P230SCcaTca5657All0.000011
S230P230SCcATcT157All0
S230P230TCcAAcG2550All0.000005
S230P230TCcaAca1450All0.000003
S230P230TCcAAcC1150All0.000002
S230P230PccAccG4046AY.1030.000248
S230P230PccAccT646AY.1030.000037
S230P230TCcAAcG2133P.10.000331
S230P230PccAccG2033P.10.000315
S230P230PccAccC1233P.10.000189
S230P230TCcAAcC1033P.10.000158
S230P230TCcaAca233P.10.000032
S230P230PccAccT133P.10.000016
S230P230PccAccG1224B.1.1.70.000011
S230P230PccAccT724B.1.1.70.000006
S230P230PccAccC524B.1.1.70.000004
S230P230delCCA---2323B.1.1.70.000021
S230P230PccAccT1318AY.40.00002
S230P230PccAccC418AY.40.000006
S230P230PccAccG118AY.40.000002
S230P230PccAccT1717AY.9.20.000624
S230P230SCcaTca1717B.1.1.70.000015
S230P230LcCacTa1515AY.40.000023
S230P230PccAccT1315AY.430.000058
S230P230PccAccG215AY.430.000009
S230P230PccAccT1515B.1.1600.000468
S230P230HcCAcAC1313All0.000002
S230P230delCCA---1313C.370.001509
S230P230PccAccT1012AY.250.00006
S230P230PccAccG212AY.250.000012
S230P230delCCA---1212AY.430.000053
S230P230PccAccT712AY.440.000043
S230P230PccAccG512AY.440.00003
S230P230PccAccG1012B.1.10.000181
S230P230PccAccT212B.1.10.000036
S230P230PccAccT1111AY.390.000272
S230P230delCCA---1111B.10.000101
S230P230PccAccT711B.1.617.20.000026
S230P230PccAccG311B.1.617.20.000011
S230P230PccAccC111B.1.617.20.000004
S230P230LcCacTa99B.1.4060.054545
S230P230delCCA---99P.1.150.002091
S230P230NCCAAAC88All0.000002
S230P230KCCAAAG88All0.000002
S230P230delCCA---88B.1.3510.000238
S230P230HcCAcAC88P.10.000126
S230P230QcCAcAG78P.10.00011
S230P230QcCacAa18P.10.000016
S230P230ACcaGca57All0.000001
S230P230ACcAGcT17All0
S230P230ACcAGcC17All0
S230P230PccAccT37B.10.000027
S230P230PccAccG37B.10.000027
S230P230PccAccC17B.10.000009
S230P230delCCA---77B.1.617.20.000026
S230P230KCCAAAG77P.10.00011
S230P230NCCAAAC77P.10.00011
S230P230PccAccT56AY.1000.00023
S230P230PccAccG16AY.1000.000046
S230P230PccAccT56AY.1020.000133
S230P230PccAccG16AY.1020.000027
S230P230QcCacAa66AY.250.000036
S230P230PccAccG66B.1.1.2160.005343
S230P230PccAccT66R.10.00054
S230P230SCcaTca55AY.40.000008
S230P230LcCacTa55AY.60.000206
S230P230LcCacTa55B.1.1.70.000004
S230P230delCCA---55B.1.1770.000066
S230P230delCCA---55P.10.000079
S230P230PccAccC44AY.30.00004
S230P230LcCacTa44AY.330.000267
S230P230QcCacAa44AY.40.000006
S230P230delCCA---44AY.40.000006
S230P230PccAccT44AY.420.000161
S230P230LcCacTa44AY.440.000024
S230P230LcCacTa44B.10.000037
S230P230QcCacAa44B.10.000037
S230P230TCcAAcG24B.1.1.280.000622
S230P230TCcAAcC14B.1.1.280.000311
S230P230TCcaAca14B.1.1.280.000311
S230P230PccAccT44B.1.20.000035
S230P230delCCA---33AY.1000.000138
S230P230SCcaTca33AY.1030.000019
S230P230PccAccC33AY.1080.003308
S230P230QcCacAa33AY.1190.000106
S230P230PccAccC23AY.1190.000071
S230P230PccAccT13AY.1190.000035
S230P230delCCA---33AY.250.000018
S230P230SCcaTca33AY.3.10.000256
S230P230delCCA---33AY.4.50.000322
S230P230LcCacTa33AY.430.000013
S230P230QcCacAa33AY.430.000013
S230P230QcCacAa33AY.440.000018
S230P230LcCacTa33AY.470.000093
S230P230PccAccT33AY.60.000123
S230P230SCcaTca33B.10.000027
S230P230PccAccG23B.1.1.280.000622
S230P230PccAccC13B.1.1.280.000311
S230P230QcCacAa33B.1.1.70.000003
S230P230PccAccC23B.1.6370.000146
S230P230PccAccT13B.1.6370.000073
S230P230PccAccG33B.400.001093
S230P230PccAccG33P.20.00056
S230P230delCCA---220.111111
S230P230LcCacTa220.111111
S230P230QcCacAa220.111111
S230P230SCcaTca120.055556
S230P230PccAccC120.055556
S230P230PccAccT120.055556
S230P230SCcATcT120.055556
S230P230YCCATAC12All0
S230P230YCCATAT12All0
S230P230del1CCa-Ta12All0
S230P230VCCAGTC12All0
S230P230del1Cca-ca12All0
S230P230VCCAGTT12All0
S230P230LcCacTa22AY.1030.000012
S230P230PccAccC22AY.1050.001286
S230P230LcCacTa22AY.250.000012
S230P230SCcaTca22AY.250.000012
S230P230LcCacTa22AY.30.00002
S230P230QcCacAa22AY.30.00002
S230P230PccAccT22AY.4.20.000043
S230P230QcCacAa22AY.420.00008
S230P230SCcaTca22AY.430.000009
S230P230PccAccT22AY.460.000208
S230P230PccAccG22AY.46.60.000144
S230P230delCCA---22AY.950.001522
S230P230LcCAcTT12B0.000128
S230P230LcCacTa12B0.000128
S230P230ACcaGca12B.10.000009
S230P230ACcAGcC12B.10.000009
S230P230PccAccC22B.1.1.330.000842
S230P230HcCAcAC22B.1.1.70.000002
S230P230YCCATAC12B.1.1.70.000001
S230P230YCCATAT12B.1.1.70.000001
S230P230PccAccT12B.1.1770.000013
S230P230PccAccC12B.1.1770.000013
S230P230QcCacAa22B.1.20.000018
S230P230SCcaTca22B.1.20.000018
S230P230PccAccT22B.1.36.380.003284
S230P230QcCacAa22B.1.4290.000047
S230P230PccAccT22B.1.4290.000047
S230P230PccAccC12B.1.910.002075
S230P230PccAccG12B.1.910.002075
S230P230TCcAAcG12P.1.20.001156
S230P230TCcaAca12P.1.20.001156
S230P230PccAccT22P.1.60.003891
S230P230QcCacAa11A0.000387
S230P230delCCA---11A.2.50.000499
S230P230SCcaTca11A.2.50.000499
S230P230PccAccT11A.2.50.000499
S230P230FCCATTC11All0
S230P230DCCAGAC11All0
S230P230delCCA---11AY.1010.00049
S230P230QcCacAa11AY.1030.000006
S230P230SCcaTca11AY.1070.000466
S230P230LcCacTa11AY.1160.000287
S230P230delCCA---11AY.1180.000063
S230P230LcCacTa11AY.1190.000035
S230P230SCcaTca11AY.1190.000035
S230P230delCCA---11AY.1200.000037
S230P230PccAccT11AY.160.00038
S230P230TCcaAca11AY.200.000039
S230P230LcCacTa11AY.230.00007
S230P230QcCacAa11AY.230.00007
S230P230delCCA---11AY.240.000431
S230P230LcCacTa11AY.260.000028
S230P230QcCacAa11AY.260.000028
S230P230SCcaTca11AY.290.000016
S230P230LcCacTa11AY.3.10.000085
S230P230PccAccT11AY.300.000396
S230P230LcCacTa11AY.320.000532
S230P230TCcaAca11AY.390.000025
S230P230QcCacAa11AY.390.000025
S230P230LcCacTa11AY.390.000025
S230P230TCcaAca11AY.40.000002
S230P230SCcaTca11AY.4.20.000022
S230P230SCcaTca11AY.4.50.000107
S230P230LcCacTa11AY.410.000294
S230P230TCcaAca11AY.420.00004
S230P230LcCacTa11AY.420.00004
S230P230ACcAGcT11AY.430.000004
S230P230TCcaAca11AY.430.000004
S230P230delCCA---11AY.440.000006
S230P230SCcaTca11AY.440.000006
S230P230del1CCa-Ta11AY.440.000006
S230P230LcCacTa11AY.450.000122
S230P230VCCAGTT11AY.460.000104
S230P230QcCacAa11AY.470.000031
S230P230delCCA---11AY.50.000021
S230P230LcCacTa11AY.50.000021
S230P230LcCacTa11AY.590.00053
S230P230PccAccT11AY.610.000105
S230P230LcCacTa11AY.610.000105
S230P230delCCA---11AY.650.000533
S230P230del1Cca-ca11AY.670.000464
S230P230TCcaAca11AY.690.000187
S230P230PccAccG11AY.7.20.000559
S230P230QcCacAa11AY.780.001541
S230P230ACcaGca11AY.850.000427
S230P230SCcaTca11AY.850.000427
S230P230TCcaAca11AY.90.000068
S230P230delCCA---11AY.90.000068
S230P230LcCacTa11AY.9.20.000037
S230P230delCCA---11AY.960.002075
S230P230delCCA---11AY.980.000079
S230P230delCCA---11AY.98.10.000048
S230P230LcCacTa11AY.99.10.001553
S230P230SCcaTca11B0.000128
S230P230TCcaAca11B.10.000009
S230P230delCCA---11B.1.10.000018
S230P230delCCA---11B.1.1.1590.004673
S230P230TCcaAca11B.1.1.1860.003436
S230P230PccAccT11B.1.1.250.000569
S230P230PccAccG11B.1.1.2610.008621
S230P230KCCAAAG11B.1.1.280.000311
S230P230delCCA---11B.1.1.280.000311
S230P230NCCAAAC11B.1.1.280.000311
S230P230QcCAcAG11B.1.1.280.000311
S230P230HcCAcAC11B.1.1.280.000311
S230P230HcCAcAC11B.1.1.330.000421
S230P230QcCacAa11B.1.1.330.000421
S230P230QcCacAa11B.1.1.5190.00004
S230P230DCCAGAC11B.1.1.70.000001
S230P230VCCAGTC11B.1.1.70.000001
S230P230PccAccT11B.1.1280.000635
S230P230ACcaGca11B.1.1600.000031
S230P230LcCacTa11B.1.1600.000031
S230P230delCCA---11B.1.160.230.004831
S230P230QcCacAa11B.1.1770.000013
S230P230PccAccT11B.1.177.100.000878
S230P230SCcaTca11B.1.177.180.00116
S230P230QcCacAa11B.1.177.210.000076
S230P230delCCA---11B.1.177.620.001192
S230P230delCCA---11B.1.177.630.002703
S230P230delCCA---11B.1.177.690.001484
S230P230TCcaAca11B.1.20.000009
S230P230delCCA---11B.1.230.006061
S230P230QcCacAa11B.1.3010.005917
S230P230SCcaTca11B.1.3260.007576
S230P230LcCacTa11B.1.3510.00003
S230P230PccAccT11B.1.36.170.000494
S230P230PccAccT11B.1.3690.000285
S230P230LcCacTa11B.1.3690.000285
S230P230LcCacTa11B.1.4290.000024
S230P230SCcaTca11B.1.4290.000024
S230P230delCCA---11B.1.5250.000113
S230P230QcCacAa11B.1.5580.004566
S230P230delCCA---11B.1.5610.000397
S230P230PccAccT11B.1.5640.000426
S230P230SCcaTca11B.1.5680.001111
S230P230QcCacAa11B.1.5810.009434
S230P230QcCacAa11B.1.5950.000261
S230P230SCcaTca11B.1.5950.000261
S230P230LcCacTa11B.1.5950.000261
S230P230QcCacAa11B.1.5960.000087
S230P230SCcaTca11B.1.617.10.000129
S230P230delCCA---11B.1.617.10.000129
S230P230ACcaGca11B.1.617.10.000129
S230P230SCcaTca11B.1.617.20.000004
S230P230FCCATTC11B.1.617.20.000004
S230P230QcCacAa11B.1.617.20.000004
S230P230PccAccT11B.1.619.10.000641
S230P230delCCA---11B.1.6200.000946
S230P230delCCA---11B.1.6210.000089
S230P230PccAccT11B.1.621.10.000506
S230P230QcCacAa11B.1.6230.000536
S230P230HcCAcAC11B.1.910.002075
S230P230QcCacAa11B.1.910.002075
S230P230PccAccT11B.100.008264
S230P230SCcaTca11P.10.000016
S230P230delCCA---11P.1.10.000318
S230P230LcCacTa11P.1.140.000048
S230P230ACcaGca11P.1.150.000232
S230P230LcCacTa11P.1.160.000374
S230P230TCcAAcG11P.1.170.000162
S230P230PccAccG11P.1.170.000162
S230P230PccAccG11P.1.20.001156
S230P230delCCA---11Q.10.000126
S230P230SCcaTca11Q.20.000613

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.