CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 230

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S230P230PsynccAccT6785150.75958722250-22252
S230P230PsynccAccG6781210.17846622250-22252
S230P230PsynccAccC678420.061946922250-22252
S230P230deldelCCA---137137122250-22252
S230P230LnonsyncCacTa84830.98809522250-22252
S230P230LnonsyncCAcTT8410.011904822250-22252
S230P230QnonsyncCacAa64560.87522250-22252
S230P230QnonsyncCAcAG6480.12522250-22252
S230P230SnonsynCcaTca57560.98245622250-22252
S230P230SnonsynCcATcT5710.017543922250-22252
S230P230TnonsynCcAAcG50250.522250-22252
S230P230TnonsynCcaAca50140.2822250-22252
S230P230TnonsynCcAAcC50110.2222250-22252
S230P230HnonsyncCAcAC1313122250-22252
S230P230KnonsynCCAAAG88122250-22252
S230P230NnonsynCCAAAC88122250-22252
S230P230AnonsynCcaGca750.71428622250-22252
S230P230AnonsynCcAGcC710.14285722250-22252
S230P230AnonsynCcAGcT710.14285722250-22252
S230P230YnonsynCCATAT210.522250-22252
S230P230VnonsynCCAGTC210.522250-22252
S230P230VnonsynCCAGTT210.522250-22252
S230P230del1delCca-ca210.522250-22252
S230P230del1delCCa-Ta210.522250-22252
S230P230YnonsynCCATAC210.522250-22252
S230P230FnonsynCCATTC11122250-22252
S230P230DnonsynCCAGAC11122250-22252

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S230P230PccAccT515678All0.000098
S230P230PccAccG121678All0.000023
S230P230PccAccC42678All0.000008
S230P230PccAccT238238B.1.221.40.991667
S230P230delCCA---137137All0.000026
S230P230PccAccT111111B.1.2210.007885
S230P230LcCacTa8384All0.000016
S230P230LcCAcTT184All0
S230P230QcCacAa5664All0.000011
S230P230QcCAcAG864All0.000002
S230P230SCcaTca5657All0.000011
S230P230SCcATcT157All0
S230P230TCcAAcG2550All0.000005
S230P230TCcaAca1450All0.000003
S230P230TCcAAcC1150All0.000002
S230P230PccAccG4046AY.1030.000248
S230P230PccAccT646AY.1030.000037
S230P230TCcAAcG2133P.10.000331
S230P230PccAccG2033P.10.000315
S230P230PccAccC1233P.10.000189
S230P230TCcAAcC1033P.10.000158
S230P230TCcaAca233P.10.000032
S230P230PccAccT133P.10.000016
S230P230PccAccG1224B.1.1.70.000011
S230P230PccAccT724B.1.1.70.000006
S230P230PccAccC524B.1.1.70.000004
S230P230delCCA---2323B.1.1.70.000021
S230P230PccAccT1318AY.40.00002
S230P230PccAccC418AY.40.000006
S230P230PccAccG118AY.40.000002
S230P230PccAccT1717AY.9.20.000624
S230P230SCcaTca1717B.1.1.70.000015
S230P230LcCacTa1515AY.40.000023
S230P230PccAccT1315AY.430.000058
S230P230PccAccG215AY.430.000009
S230P230PccAccT1515B.1.1600.000468
S230P230HcCAcAC1313All0.000002
S230P230delCCA---1313C.370.001509
S230P230PccAccT1012AY.250.00006
S230P230PccAccG212AY.250.000012
S230P230delCCA---1212AY.430.000053
S230P230PccAccT712AY.440.000043
S230P230PccAccG512AY.440.00003
S230P230PccAccG1012B.1.10.000181
S230P230PccAccT212B.1.10.000036
S230P230PccAccT1111AY.390.000272
S230P230delCCA---1111B.10.000101
S230P230PccAccT711B.1.617.20.000026
S230P230PccAccG311B.1.617.20.000011
S230P230PccAccC111B.1.617.20.000004
S230P230LcCacTa99B.1.4060.054545
S230P230delCCA---99P.1.150.002091
S230P230NCCAAAC88All0.000002
S230P230KCCAAAG88All0.000002
S230P230delCCA---88B.1.3510.000238
S230P230HcCAcAC88P.10.000126
S230P230QcCAcAG78P.10.00011
S230P230QcCacAa18P.10.000016
S230P230ACcaGca57All0.000001
S230P230ACcAGcT17All0
S230P230ACcAGcC17All0
S230P230PccAccT37B.10.000027
S230P230PccAccG37B.10.000027
S230P230PccAccC17B.10.000009
S230P230delCCA---77B.1.617.20.000026
S230P230KCCAAAG77P.10.00011
S230P230NCCAAAC77P.10.00011
S230P230PccAccT56AY.1000.00023
S230P230PccAccG16AY.1000.000046
S230P230PccAccT56AY.1020.000133
S230P230PccAccG16AY.1020.000027
S230P230QcCacAa66AY.250.000036
S230P230PccAccG66B.1.1.2160.005343
S230P230PccAccT66R.10.00054
S230P230SCcaTca55AY.40.000008
S230P230LcCacTa55AY.60.000206
S230P230LcCacTa55B.1.1.70.000004
S230P230delCCA---55B.1.1770.000066
S230P230delCCA---55P.10.000079
S230P230PccAccC44AY.30.00004
S230P230LcCacTa44AY.330.000267
S230P230QcCacAa44AY.40.000006
S230P230delCCA---44AY.40.000006
S230P230PccAccT44AY.420.000161
S230P230LcCacTa44AY.440.000024
S230P230LcCacTa44B.10.000037
S230P230QcCacAa44B.10.000037
S230P230TCcAAcG24B.1.1.280.000622
S230P230TCcAAcC14B.1.1.280.000311
S230P230TCcaAca14B.1.1.280.000311
S230P230PccAccT44B.1.20.000035
S230P230delCCA---33AY.1000.000138
S230P230SCcaTca33AY.1030.000019
S230P230PccAccC33AY.1080.003308
S230P230QcCacAa33AY.1190.000106
S230P230PccAccC23AY.1190.000071
S230P230PccAccT13AY.1190.000035
S230P230delCCA---33AY.250.000018
S230P230SCcaTca33AY.3.10.000256
S230P230delCCA---33AY.4.50.000322
S230P230LcCacTa33AY.430.000013
S230P230QcCacAa33AY.430.000013
S230P230QcCacAa33AY.440.000018
S230P230LcCacTa33AY.470.000093
S230P230PccAccT33AY.60.000123
S230P230SCcaTca33B.10.000027
S230P230PccAccG23B.1.1.280.000622
S230P230PccAccC13B.1.1.280.000311
S230P230QcCacAa33B.1.1.70.000003
S230P230PccAccC23B.1.6370.000146
S230P230PccAccT13B.1.6370.000073
S230P230PccAccG33B.400.001093
S230P230PccAccG33P.20.00056
S230P230delCCA---220.111111
S230P230LcCacTa220.111111
S230P230QcCacAa220.111111
S230P230SCcaTca120.055556
S230P230PccAccC120.055556
S230P230PccAccT120.055556
S230P230SCcATcT120.055556
S230P230YCCATAC12All0
S230P230YCCATAT12All0
S230P230del1CCa-Ta12All0
S230P230VCCAGTC12All0
S230P230del1Cca-ca12All0
S230P230VCCAGTT12All0
S230P230LcCacTa22AY.1030.000012
S230P230PccAccC22AY.1050.001286
S230P230LcCacTa22AY.250.000012
S230P230SCcaTca22AY.250.000012
S230P230LcCacTa22AY.30.00002
S230P230QcCacAa22AY.30.00002
S230P230PccAccT22AY.4.20.000043
S230P230QcCacAa22AY.420.00008
S230P230SCcaTca22AY.430.000009
S230P230PccAccT22AY.460.000208
S230P230PccAccG22AY.46.60.000144
S230P230delCCA---22AY.950.001522
S230P230LcCAcTT12B0.000128
S230P230LcCacTa12B0.000128
S230P230ACcaGca12B.10.000009
S230P230ACcAGcC12B.10.000009
S230P230PccAccC22B.1.1.330.000842
S230P230HcCAcAC22B.1.1.70.000002
S230P230YCCATAC12B.1.1.70.000001
S230P230YCCATAT12B.1.1.70.000001
S230P230PccAccT12B.1.1770.000013
S230P230PccAccC12B.1.1770.000013
S230P230QcCacAa22B.1.20.000018
S230P230SCcaTca22B.1.20.000018
S230P230PccAccT22B.1.36.380.003284
S230P230QcCacAa22B.1.4290.000047
S230P230PccAccT22B.1.4290.000047
S230P230PccAccC12B.1.910.002075
S230P230PccAccG12B.1.910.002075
S230P230TCcAAcG12P.1.20.001156
S230P230TCcaAca12P.1.20.001156
S230P230PccAccT22P.1.60.003891
S230P230QcCacAa11A0.000387
S230P230delCCA---11A.2.50.000499
S230P230SCcaTca11A.2.50.000499
S230P230PccAccT11A.2.50.000499
S230P230FCCATTC11All0
S230P230DCCAGAC11All0
S230P230delCCA---11AY.1010.00049
S230P230QcCacAa11AY.1030.000006
S230P230SCcaTca11AY.1070.000466
S230P230LcCacTa11AY.1160.000287
S230P230delCCA---11AY.1180.000063
S230P230LcCacTa11AY.1190.000035
S230P230SCcaTca11AY.1190.000035
S230P230delCCA---11AY.1200.000037
S230P230PccAccT11AY.160.00038
S230P230TCcaAca11AY.200.000039
S230P230LcCacTa11AY.230.00007
S230P230QcCacAa11AY.230.00007
S230P230delCCA---11AY.240.000431
S230P230LcCacTa11AY.260.000028
S230P230QcCacAa11AY.260.000028
S230P230SCcaTca11AY.290.000016
S230P230LcCacTa11AY.3.10.000085
S230P230PccAccT11AY.300.000396
S230P230LcCacTa11AY.320.000532
S230P230TCcaAca11AY.390.000025
S230P230QcCacAa11AY.390.000025
S230P230LcCacTa11AY.390.000025
S230P230TCcaAca11AY.40.000002
S230P230SCcaTca11AY.4.20.000022
S230P230SCcaTca11AY.4.50.000107
S230P230LcCacTa11AY.410.000294
S230P230TCcaAca11AY.420.00004
S230P230LcCacTa11AY.420.00004
S230P230ACcAGcT11AY.430.000004
S230P230TCcaAca11AY.430.000004
S230P230delCCA---11AY.440.000006
S230P230SCcaTca11AY.440.000006
S230P230del1CCa-Ta11AY.440.000006
S230P230LcCacTa11AY.450.000122
S230P230VCCAGTT11AY.460.000104
S230P230QcCacAa11AY.470.000031
S230P230delCCA---11AY.50.000021
S230P230LcCacTa11AY.50.000021
S230P230LcCacTa11AY.590.00053
S230P230PccAccT11AY.610.000105
S230P230LcCacTa11AY.610.000105
S230P230delCCA---11AY.650.000533
S230P230del1Cca-ca11AY.670.000464
S230P230TCcaAca11AY.690.000187
S230P230PccAccG11AY.7.20.000559
S230P230QcCacAa11AY.780.001541
S230P230ACcaGca11AY.850.000427
S230P230SCcaTca11AY.850.000427
S230P230TCcaAca11AY.90.000068
S230P230delCCA---11AY.90.000068
S230P230LcCacTa11AY.9.20.000037
S230P230delCCA---11AY.960.002075
S230P230delCCA---11AY.980.000079
S230P230delCCA---11AY.98.10.000048
S230P230LcCacTa11AY.99.10.001553
S230P230SCcaTca11B0.000128
S230P230TCcaAca11B.10.000009
S230P230delCCA---11B.1.10.000018
S230P230delCCA---11B.1.1.1590.004673
S230P230TCcaAca11B.1.1.1860.003436
S230P230PccAccT11B.1.1.250.000569
S230P230PccAccG11B.1.1.2610.008621
S230P230KCCAAAG11B.1.1.280.000311
S230P230delCCA---11B.1.1.280.000311
S230P230NCCAAAC11B.1.1.280.000311
S230P230QcCAcAG11B.1.1.280.000311
S230P230HcCAcAC11B.1.1.280.000311
S230P230HcCAcAC11B.1.1.330.000421
S230P230QcCacAa11B.1.1.330.000421
S230P230QcCacAa11B.1.1.5190.00004
S230P230DCCAGAC11B.1.1.70.000001
S230P230VCCAGTC11B.1.1.70.000001
S230P230PccAccT11B.1.1280.000635
S230P230ACcaGca11B.1.1600.000031
S230P230LcCacTa11B.1.1600.000031
S230P230delCCA---11B.1.160.230.004831
S230P230QcCacAa11B.1.1770.000013
S230P230PccAccT11B.1.177.100.000878
S230P230SCcaTca11B.1.177.180.00116
S230P230QcCacAa11B.1.177.210.000076
S230P230delCCA---11B.1.177.620.001192
S230P230delCCA---11B.1.177.630.002703
S230P230delCCA---11B.1.177.690.001484
S230P230TCcaAca11B.1.20.000009
S230P230delCCA---11B.1.230.006061
S230P230QcCacAa11B.1.3010.005917
S230P230SCcaTca11B.1.3260.007576
S230P230LcCacTa11B.1.3510.00003
S230P230PccAccT11B.1.36.170.000494
S230P230PccAccT11B.1.3690.000285
S230P230LcCacTa11B.1.3690.000285
S230P230LcCacTa11B.1.4290.000024
S230P230SCcaTca11B.1.4290.000024
S230P230delCCA---11B.1.5250.000113
S230P230QcCacAa11B.1.5580.004566
S230P230delCCA---11B.1.5610.000397
S230P230PccAccT11B.1.5640.000426
S230P230SCcaTca11B.1.5680.001111
S230P230QcCacAa11B.1.5810.009434
S230P230QcCacAa11B.1.5950.000261
S230P230SCcaTca11B.1.5950.000261
S230P230LcCacTa11B.1.5950.000261
S230P230QcCacAa11B.1.5960.000087
S230P230SCcaTca11B.1.617.10.000129
S230P230delCCA---11B.1.617.10.000129
S230P230ACcaGca11B.1.617.10.000129
S230P230SCcaTca11B.1.617.20.000004
S230P230FCCATTC11B.1.617.20.000004
S230P230QcCacAa11B.1.617.20.000004
S230P230PccAccT11B.1.619.10.000641
S230P230delCCA---11B.1.6200.000946
S230P230delCCA---11B.1.6210.000089
S230P230PccAccT11B.1.621.10.000506
S230P230QcCacAa11B.1.6230.000536
S230P230HcCAcAC11B.1.910.002075
S230P230QcCacAa11B.1.910.002075
S230P230PccAccT11B.100.008264
S230P230SCcaTca11P.10.000016
S230P230delCCA---11P.1.10.000318
S230P230LcCacTa11P.1.140.000048
S230P230ACcaGca11P.1.150.000232
S230P230LcCacTa11P.1.160.000374
S230P230TCcAAcG11P.1.170.000162
S230P230PccAccG11P.1.170.000162
S230P230PccAccG11P.1.20.001156
S230P230delCCA---11Q.10.000126
S230P230SCcaTca11Q.20.000613