CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 23 | Q23H | nonsyn | caA | caT | 1145 | 1012 | 0.883843 | 21629-21631 | |
S | 23 | Q23H | nonsyn | caA | caC | 1145 | 133 | 0.116157 | 21629-21631 | |
S | 23 | Q23R | nonsyn | cAa | cGa | 639 | 634 | 0.992175 | 21629-21631 | |
S | 23 | Q23R | nonsyn | cAA | cGG | 639 | 3 | 0.00469484 | 21629-21631 | |
S | 23 | Q23R | nonsyn | cAA | cGT | 639 | 2 | 0.00312989 | 21629-21631 | |
S | 23 | Q23P | nonsyn | cAa | cCa | 269 | 269 | 1 | 21629-21631 | |
S | 23 | Q23L | nonsyn | cAa | cTa | 154 | 154 | 1 | 21629-21631 | |
S | 23 | Q23Q | syn | caA | caG | 93 | 93 | 1 | 21629-21631 | |
S | 23 | Q23del | del | CAA | --- | 91 | 91 | 1 | 21629-21631 | |
S | 23 | Q23K | nonsyn | Caa | Aaa | 89 | 89 | 1 | 21629-21631 | |
S | 23 | Q23X | nonsyn | Caa | Taa | 42 | 42 | 1 | 21629-21631 | |
S | 23 | Q23E | nonsyn | Caa | Gaa | 42 | 40 | 0.952381 | 21629-21631 | |
S | 23 | Q23E | nonsyn | CaA | GaG | 42 | 2 | 0.047619 | 21629-21631 | |
S | 23 | Q23F | nonsyn | CAA | TTT | 5 | 5 | 1 | 21629-21631 | |
S | 23 | Q23G | nonsyn | CAA | GGT | 4 | 2 | 0.5 | 21629-21631 | |
S | 23 | Q23G | nonsyn | CAA | GGG | 4 | 2 | 0.5 | 21629-21631 | |
S | 23 | Q23T | nonsyn | CAa | ACa | 2 | 2 | 1 | 21629-21631 | |
S | 23 | Q23D | nonsyn | CaA | GaT | 2 | 2 | 1 | 21629-21631 | |
S | 23 | Q23del1 | del | cAa | c-a | 1 | 1 | 1 | 21629-21631 | |
S | 23 | Q23W | nonsyn | CAA | TGG | 1 | 1 | 1 | 21629-21631 | |
S | 23 | Q23I | nonsyn | CAa | ATa | 1 | 1 | 1 | 21629-21631 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 23 | Q23H | caA | caT | 1012 | 1145 | All | 0.000194 |
S | 23 | Q23H | caA | caC | 133 | 1145 | All | 0.000025 |
S | 23 | Q23H | caA | caT | 939 | 939 | B.1.177.6 | 0.916992 |
S | 23 | Q23R | cAa | cGa | 634 | 639 | All | 0.000121 |
S | 23 | Q23R | cAA | cGG | 3 | 639 | All | 0.000001 |
S | 23 | Q23R | cAA | cGT | 2 | 639 | All | 0 |
S | 23 | Q23R | cAa | cGa | 274 | 274 | B.1.36 | 0.039977 |
S | 23 | Q23P | cAa | cCa | 269 | 269 | All | 0.000051 |
S | 23 | Q23P | cAa | cCa | 241 | 241 | AY.4 | 0.000375 |
S | 23 | Q23L | cAa | cTa | 154 | 154 | All | 0.000029 |
S | 23 | Q23Q | caA | caG | 93 | 93 | All | 0.000018 |
S | 23 | Q23R | cAa | cGa | 92 | 92 | B.1.177 | 0.001211 |
S | 23 | Q23del | CAA | --- | 91 | 91 | All | 0.000017 |
S | 23 | Q23K | Caa | Aaa | 89 | 89 | All | 0.000017 |
S | 23 | Q23K | Caa | Aaa | 59 | 59 | B.1.1.33 | 0.024832 |
S | 23 | Q23R | cAa | cGa | 57 | 57 | P.1 | 0.000898 |
S | 23 | Q23H | caA | caC | 35 | 49 | B.1.1.7 | 0.000031 |
S | 23 | Q23H | caA | caT | 14 | 49 | B.1.1.7 | 0.000013 |
S | 23 | Q23L | cAa | cTa | 45 | 45 | B.1.1.7 | 0.00004 |
S | 23 | Q23X | Caa | Taa | 42 | 42 | All | 0.000008 |
S | 23 | Q23E | Caa | Gaa | 40 | 42 | All | 0.000008 |
S | 23 | Q23E | CaA | GaG | 2 | 42 | All | 0 |
S | 23 | Q23R | cAa | cGa | 38 | 38 | AY.39 | 0.000939 |
S | 23 | Q23R | cAa | cGa | 26 | 26 | B.1 | 0.000238 |
S | 23 | Q23E | Caa | Gaa | 25 | 25 | AY.44 | 0.000152 |
S | 23 | Q23R | cAa | cGa | 16 | 16 | B.1.1.7 | 0.000014 |
S | 23 | Q23Q | caA | caG | 16 | 16 | B.1.177.59 | 0.258065 |
S | 23 | Q23L | cAa | cTa | 14 | 14 | AY.4 | 0.000022 |
S | 23 | Q23Q | caA | caG | 14 | 14 | B.1.1.7 | 0.000013 |
S | 23 | Q23H | caA | caC | 13 | 14 | B.1.617.2 | 0.000049 |
S | 23 | Q23H | caA | caT | 1 | 14 | B.1.617.2 | 0.000004 |
S | 23 | Q23H | caA | caT | 12 | 13 | AY.4 | 0.000019 |
S | 23 | Q23H | caA | caC | 1 | 13 | AY.4 | 0.000002 |
S | 23 | Q23R | cAa | cGa | 12 | 12 | AY.103 | 0.000075 |
S | 23 | Q23L | cAa | cTa | 12 | 12 | AY.119 | 0.000424 |
S | 23 | Q23Q | caA | caG | 12 | 12 | AY.44 | 0.000073 |
S | 23 | Q23R | cAa | cGa | 12 | 12 | B.1.1.432 | 0.01519 |
S | 23 | Q23H | caA | caT | 11 | 12 | B.1.177 | 0.000145 |
S | 23 | Q23H | caA | caC | 1 | 12 | B.1.177 | 0.000013 |
S | 23 | Q23del | CAA | --- | 11 | 11 | B.1.1.7 | 0.00001 |
S | 23 | Q23del | CAA | --- | 11 | 11 | B.1.427 | 0.000555 |
S | 23 | Q23H | caA | caC | 11 | 11 | B.1.621 | 0.000974 |
S | 23 | Q23del | CAA | --- | 10 | 10 | AY.33 | 0.000668 |
S | 23 | Q23H | caA | caT | 7 | 10 | B.1 | 0.000064 |
S | 23 | Q23H | caA | caC | 3 | 10 | B.1 | 0.000027 |
S | 23 | Q23R | cAa | cGa | 10 | 10 | B.1.617.2 | 0.000038 |
S | 23 | Q23H | caA | caC | 9 | 9 | AY.42 | 0.000362 |
S | 23 | Q23H | caA | caC | 9 | 9 | B.1.1.519 | 0.000357 |
S | 23 | Q23R | cAa | cGa | 9 | 9 | B.1.1.519 | 0.000357 |
S | 23 | Q23R | cAa | cGa | 9 | 9 | B.1.110.3 | 0.006466 |
S | 23 | Q23R | cAa | cGa | 8 | 8 | AY.4 | 0.000012 |
S | 23 | Q23H | caA | caC | 8 | 8 | AY.95 | 0.006088 |
S | 23 | Q23L | cAa | cTa | 8 | 8 | B.1.177.86 | 0.001468 |
S | 23 | Q23P | cAa | cCa | 8 | 8 | B.1.617.2 | 0.00003 |
S | 23 | Q23L | cAa | cTa | 7 | 7 | AY.3 | 0.00007 |
S | 23 | Q23H | caA | caC | 7 | 7 | AY.99.1 | 0.01087 |
S | 23 | Q23H | caA | caC | 6 | 7 | B.1.1 | 0.000109 |
S | 23 | Q23H | caA | caT | 1 | 7 | B.1.1 | 0.000018 |
S | 23 | Q23P | cAa | cCa | 6 | 6 | AY.47 | 0.000187 |
S | 23 | Q23R | cAa | cGa | 6 | 6 | B.1.1 | 0.000109 |
S | 23 | Q23del | CAA | --- | 6 | 6 | B.1.1 | 0.000109 |
S | 23 | Q23H | caA | caC | 3 | 6 | B.1.258 | 0.0002 |
S | 23 | Q23H | caA | caT | 3 | 6 | B.1.258 | 0.0002 |
S | 23 | Q23F | CAA | TTT | 5 | 5 | All | 0.000001 |
S | 23 | Q23del | CAA | --- | 5 | 5 | AY.103 | 0.000031 |
S | 23 | Q23X | Caa | Taa | 5 | 5 | AY.4 | 0.000008 |
S | 23 | Q23R | cAa | cGa | 4 | 5 | AY.43 | 0.000018 |
S | 23 | Q23R | cAA | cGG | 1 | 5 | AY.43 | 0.000004 |
S | 23 | Q23K | Caa | Aaa | 5 | 5 | B.1 | 0.000046 |
S | 23 | Q23Q | caA | caG | 5 | 5 | B.1 | 0.000046 |
S | 23 | Q23L | cAa | cTa | 5 | 5 | B.1.320 | 0.006227 |
S | 23 | Q23E | Caa | Gaa | 5 | 5 | B.1.351 | 0.000149 |
S | 23 | Q23R | cAa | cGa | 5 | 5 | B.1.429 | 0.000118 |
S | 23 | Q23R | cAa | cGa | 5 | 5 | B.1.456 | 0.01634 |
S | 23 | Q23H | caA | caT | 5 | 5 | B.1.617.1 | 0.000645 |
S | 23 | Q23L | cAa | cTa | 5 | 5 | P.1 | 0.000079 |
S | 23 | Q23R | cAA | cGG | 2 | 4 | 0.111111 | |
S | 23 | Q23G | CAA | GGG | 2 | 4 | 0.111111 | |
S | 23 | Q23G | CAA | GGT | 2 | 4 | 0.111111 | |
S | 23 | Q23R | cAA | cGT | 2 | 4 | 0.111111 | |
S | 23 | Q23G | CAA | GGG | 2 | 4 | All | 0 |
S | 23 | Q23G | CAA | GGT | 2 | 4 | All | 0 |
S | 23 | Q23H | caA | caC | 2 | 4 | AY.103 | 0.000012 |
S | 23 | Q23H | caA | caT | 2 | 4 | AY.103 | 0.000012 |
S | 23 | Q23del | CAA | --- | 4 | 4 | AY.120 | 0.000149 |
S | 23 | Q23del | CAA | --- | 4 | 4 | AY.4 | 0.000006 |
S | 23 | Q23del | CAA | --- | 4 | 4 | AY.43 | 0.000018 |
S | 23 | Q23X | Caa | Taa | 4 | 4 | B.1 | 0.000037 |
S | 23 | Q23E | Caa | Gaa | 4 | 4 | B.1.1 | 0.000073 |
S | 23 | Q23F | CAA | TTT | 4 | 4 | B.1.1.7 | 0.000004 |
S | 23 | Q23X | Caa | Taa | 4 | 4 | B.1.1.7 | 0.000004 |
S | 23 | Q23Q | caA | caG | 4 | 4 | B.1.2 | 0.000035 |
S | 23 | Q23L | cAa | cTa | 4 | 4 | B.1.2 | 0.000035 |
S | 23 | Q23H | caA | caC | 3 | 4 | B.1.2 | 0.000026 |
S | 23 | Q23H | caA | caT | 1 | 4 | B.1.2 | 0.000009 |
S | 23 | Q23Q | caA | caG | 4 | 4 | B.1.526 | 0.000094 |
S | 23 | Q23H | caA | caC | 4 | 4 | C.36 | 0.003643 |
S | 23 | Q23R | cAa | cGa | 3 | 3 | AY.102 | 0.00008 |
S | 23 | Q23K | Caa | Aaa | 3 | 3 | AY.121 | 0.000406 |
S | 23 | Q23P | cAa | cCa | 3 | 3 | AY.20 | 0.000117 |
S | 23 | Q23H | caA | caT | 3 | 3 | AY.25 | 0.000018 |
S | 23 | Q23L | cAa | cTa | 3 | 3 | AY.43 | 0.000013 |
S | 23 | Q23H | caA | caC | 3 | 3 | AY.5 | 0.000062 |
S | 23 | Q23Q | caA | caG | 3 | 3 | B.1.177 | 0.00004 |
S | 23 | Q23R | cAa | cGa | 3 | 3 | B.1.260 | 0.010033 |
S | 23 | Q23del | CAA | --- | 3 | 3 | B.1.525 | 0.000339 |
S | 23 | Q23L | cAa | cTa | 3 | 3 | B.1.617.2 | 0.000011 |
S | 23 | Q23Q | caA | caG | 3 | 3 | B.1.617.2 | 0.000011 |
S | 23 | Q23L | cAa | cTa | 3 | 3 | C.37 | 0.000348 |
S | 23 | Q23del | CAA | --- | 3 | 3 | P.1 | 0.000047 |
S | 23 | Q23D | CaA | GaT | 2 | 2 | 0.111111 | |
S | 23 | Q23H | caA | caT | 2 | 2 | 0.111111 | |
S | 23 | Q23E | CaA | GaG | 2 | 2 | 0.111111 | |
S | 23 | Q23Q | caA | caG | 2 | 2 | 0.111111 | |
S | 23 | Q23D | CaA | GaT | 2 | 2 | All | 0 |
S | 23 | Q23T | CAa | ACa | 2 | 2 | All | 0 |
S | 23 | Q23Q | caA | caG | 2 | 2 | AY.103 | 0.000012 |
S | 23 | Q23Q | caA | caG | 2 | 2 | AY.118 | 0.000125 |
S | 23 | Q23Q | caA | caG | 2 | 2 | AY.25 | 0.000012 |
S | 23 | Q23L | cAa | cTa | 2 | 2 | AY.25 | 0.000012 |
S | 23 | Q23P | cAa | cCa | 2 | 2 | AY.27 | 0.000129 |
S | 23 | Q23L | cAa | cTa | 2 | 2 | AY.29 | 0.000032 |
S | 23 | Q23X | Caa | Taa | 2 | 2 | AY.39 | 0.000049 |
S | 23 | Q23Q | caA | caG | 2 | 2 | AY.4 | 0.000003 |
S | 23 | Q23X | Caa | Taa | 2 | 2 | AY.43 | 0.000009 |
S | 23 | Q23L | cAa | cTa | 2 | 2 | AY.47 | 0.000062 |
S | 23 | Q23R | cAa | cGa | 2 | 2 | AY.47 | 0.000062 |
S | 23 | Q23H | caA | caT | 2 | 2 | AY.75 | 0.000112 |
S | 23 | Q23R | cAa | cGa | 2 | 2 | AY.9.1 | 0.000167 |
S | 23 | Q23del | CAA | --- | 2 | 2 | B.1 | 0.000018 |
S | 23 | Q23L | cAa | cTa | 2 | 2 | B.1 | 0.000018 |
S | 23 | Q23K | Caa | Aaa | 2 | 2 | B.1.1 | 0.000036 |
S | 23 | Q23R | cAa | cGa | 2 | 2 | B.1.1.176 | 0.000879 |
S | 23 | Q23Q | caA | caG | 2 | 2 | B.1.1.216 | 0.001781 |
S | 23 | Q23H | caA | caC | 2 | 2 | B.1.1.222 | 0.000408 |
S | 23 | Q23P | cAa | cCa | 2 | 2 | B.1.1.7 | 0.000002 |
S | 23 | Q23L | cAa | cTa | 2 | 2 | B.1.177 | 0.000026 |
S | 23 | Q23X | Caa | Taa | 2 | 2 | B.1.2 | 0.000018 |
S | 23 | Q23R | cAa | cGa | 2 | 2 | B.1.36.16 | 0.002849 |
S | 23 | Q23L | cAa | cTa | 2 | 2 | B.1.36.22 | 0.002415 |
S | 23 | Q23L | cAa | cTa | 2 | 2 | B.1.369 | 0.00057 |
S | 23 | Q23Q | caA | caG | 2 | 2 | B.1.400 | 0.000858 |
S | 23 | Q23T | CAa | ACa | 2 | 2 | B.1.429 | 0.000047 |
S | 23 | Q23Q | caA | caG | 2 | 2 | B.1.466.2 | 0.000782 |
S | 23 | Q23R | cAa | cGa | 2 | 2 | B.1.468 | 0.011429 |
S | 23 | Q23R | cAa | cGa | 2 | 2 | B.1.617.1 | 0.000258 |
S | 23 | Q23K | Caa | Aaa | 2 | 2 | B.1.617.2 | 0.000008 |
S | 23 | Q23L | cAa | cTa | 2 | 2 | C.16 | 0.002121 |
S | 23 | Q23H | caA | caC | 2 | 2 | C.17 | 0.111111 |
S | 23 | Q23K | Caa | Aaa | 2 | 2 | D.2 | 0.00015 |
S | 23 | Q23P | cAa | cCa | 2 | 2 | P.1 | 0.000032 |
S | 23 | Q23R | cAa | cGa | 2 | 2 | P.1.12 | 0.000968 |
S | 23 | Q23H | caA | caT | 2 | 2 | Q.8 | 0.00033 |
S | 23 | Q23I | CAa | ATa | 1 | 1 | 0.055556 | |
S | 23 | Q23K | Caa | Aaa | 1 | 1 | 0.055556 | |
S | 23 | Q23L | cAa | cTa | 1 | 1 | 0.055556 | |
S | 23 | Q23del | CAA | --- | 1 | 1 | A.2.4 | 0.003367 |
S | 23 | Q23H | caA | caC | 1 | 1 | A.2.4 | 0.003367 |
S | 23 | Q23L | cAa | cTa | 1 | 1 | A.2.4 | 0.003367 |
S | 23 | Q23R | cAa | cGa | 1 | 1 | A.2.5 | 0.000499 |
S | 23 | Q23E | Caa | Gaa | 1 | 1 | A.2.5.2 | 0.001572 |
S | 23 | Q23H | caA | caT | 1 | 1 | A.2.5.2 | 0.001572 |
S | 23 | Q23I | CAa | ATa | 1 | 1 | All | 0 |
S | 23 | Q23W | CAA | TGG | 1 | 1 | All | 0 |
S | 23 | Q23del1 | cAa | c-a | 1 | 1 | All | 0 |
S | 23 | Q23R | cAa | cGa | 1 | 1 | AU.2 | 0.002421 |
S | 23 | Q23P | cAa | cCa | 1 | 1 | AY.100 | 0.000046 |
S | 23 | Q23L | cAa | cTa | 1 | 1 | AY.100 | 0.000046 |
S | 23 | Q23X | Caa | Taa | 1 | 1 | AY.100 | 0.000046 |
S | 23 | Q23del | CAA | --- | 1 | 1 | AY.100 | 0.000046 |
S | 23 | Q23del | CAA | --- | 1 | 1 | AY.101 | 0.00049 |
S | 23 | Q23L | cAa | cTa | 1 | 1 | AY.102 | 0.000027 |
S | 23 | Q23L | cAa | cTa | 1 | 1 | AY.103 | 0.000006 |
S | 23 | Q23E | Caa | Gaa | 1 | 1 | AY.103 | 0.000006 |
S | 23 | Q23L | cAa | cTa | 1 | 1 | AY.116 | 0.000287 |
S | 23 | Q23L | cAa | cTa | 1 | 1 | AY.116.1 | 0.000311 |
S | 23 | Q23X | Caa | Taa | 1 | 1 | AY.118 | 0.000063 |
S | 23 | Q23L | cAa | cTa | 1 | 1 | AY.121 | 0.000135 |
S | 23 | Q23H | caA | caC | 1 | 1 | AY.20 | 0.000039 |
S | 23 | Q23L | cAa | cTa | 1 | 1 | AY.20 | 0.000039 |
S | 23 | Q23L | cAa | cTa | 1 | 1 | AY.23 | 0.00007 |
S | 23 | Q23Q | caA | caG | 1 | 1 | AY.23.1 | 0.000417 |
S | 23 | Q23del | CAA | --- | 1 | 1 | AY.25 | 0.000006 |
S | 23 | Q23L | cAa | cTa | 1 | 1 | AY.26 | 0.000028 |
S | 23 | Q23Q | caA | caG | 1 | 1 | AY.29 | 0.000016 |
S | 23 | Q23H | caA | caC | 1 | 1 | AY.29 | 0.000016 |
S | 23 | Q23del | CAA | --- | 1 | 1 | AY.3 | 0.00001 |
S | 23 | Q23Q | caA | caG | 1 | 1 | AY.3 | 0.00001 |
S | 23 | Q23L | cAa | cTa | 1 | 1 | AY.3.1 | 0.000085 |
S | 23 | Q23del | CAA | --- | 1 | 1 | AY.32 | 0.000532 |
S | 23 | Q23Q | caA | caG | 1 | 1 | AY.34.1 | 0.00051 |
S | 23 | Q23R | cAa | cGa | 1 | 1 | AY.36 | 0.000148 |
S | 23 | Q23H | caA | caT | 1 | 1 | AY.39 | 0.000025 |
S | 23 | Q23del | CAA | --- | 1 | 1 | AY.39 | 0.000025 |
S | 23 | Q23del | CAA | --- | 1 | 1 | AY.39.1 | 0.00004 |
S | 23 | Q23K | Caa | Aaa | 1 | 1 | AY.4 | 0.000002 |
S | 23 | Q23X | Caa | Taa | 1 | 1 | AY.4.2 | 0.000022 |
S | 23 | Q23L | cAa | cTa | 1 | 1 | AY.4.2 | 0.000022 |
S | 23 | Q23X | Caa | Taa | 1 | 1 | AY.40 | 0.000964 |
S | 23 | Q23del | CAA | --- | 1 | 1 | AY.42 | 0.00004 |
S | 23 | Q23K | Caa | Aaa | 1 | 1 | AY.42 | 0.00004 |
S | 23 | Q23P | cAa | cCa | 1 | 1 | AY.43 | 0.000004 |
S | 23 | Q23Q | caA | caG | 1 | 1 | AY.43 | 0.000004 |
S | 23 | Q23K | Caa | Aaa | 1 | 1 | AY.43 | 0.000004 |
S | 23 | Q23H | caA | caC | 1 | 1 | AY.43 | 0.000004 |
S | 23 | Q23X | Caa | Taa | 1 | 1 | AY.44 | 0.000006 |
S | 23 | Q23R | cAa | cGa | 1 | 1 | AY.44 | 0.000006 |
S | 23 | Q23H | caA | caC | 1 | 1 | AY.44 | 0.000006 |
S | 23 | Q23del | CAA | --- | 1 | 1 | AY.44 | 0.000006 |
S | 23 | Q23L | cAa | cTa | 1 | 1 | AY.44 | 0.000006 |
S | 23 | Q23R | cAa | cGa | 1 | 1 | AY.45 | 0.000122 |
S | 23 | Q23H | caA | caC | 1 | 1 | AY.46 | 0.000104 |
S | 23 | Q23X | Caa | Taa | 1 | 1 | AY.46 | 0.000104 |
S | 23 | Q23E | Caa | Gaa | 1 | 1 | AY.46 | 0.000104 |
S | 23 | Q23P | cAa | cCa | 1 | 1 | AY.46.4 | 0.000165 |
S | 23 | Q23Q | caA | caG | 1 | 1 | AY.46.4 | 0.000165 |
S | 23 | Q23Q | caA | caG | 1 | 1 | AY.47 | 0.000031 |
S | 23 | Q23Q | caA | caG | 1 | 1 | AY.51 | 0.000909 |
S | 23 | Q23del | CAA | --- | 1 | 1 | AY.54 | 0.000095 |
S | 23 | Q23P | cAa | cCa | 1 | 1 | AY.6 | 0.000041 |
S | 23 | Q23del | CAA | --- | 1 | 1 | AY.68 | 0.000274 |
S | 23 | Q23R | cAa | cGa | 1 | 1 | AY.7 | 0.000196 |
S | 23 | Q23del | CAA | --- | 1 | 1 | AY.75.1 | 0.00018 |
S | 23 | Q23R | cAa | cGa | 1 | 1 | AY.75.1 | 0.00018 |
S | 23 | Q23P | cAa | cCa | 1 | 1 | AY.85 | 0.000427 |
S | 23 | Q23Q | caA | caG | 1 | 1 | AY.9 | 0.000068 |
S | 23 | Q23R | cAa | cGa | 1 | 1 | AY.9.2 | 0.000037 |
S | 23 | Q23del | CAA | --- | 1 | 1 | AY.98 | 0.000079 |
S | 23 | Q23L | cAa | cTa | 1 | 1 | AY.98 | 0.000079 |
S | 23 | Q23L | cAa | cTa | 1 | 1 | AY.98.1 | 0.000048 |
S | 23 | Q23K | Caa | Aaa | 1 | 1 | AY.99.1 | 0.001553 |
S | 23 | Q23del1 | cAa | c-a | 1 | 1 | B | 0.000128 |
S | 23 | Q23X | Caa | Taa | 1 | 1 | B.1.1 | 0.000018 |
S | 23 | Q23L | cAa | cTa | 1 | 1 | B.1.1 | 0.000018 |
S | 23 | Q23Q | caA | caG | 1 | 1 | B.1.1.170 | 0.001247 |
S | 23 | Q23X | Caa | Taa | 1 | 1 | B.1.1.217 | 0.003636 |
S | 23 | Q23H | caA | caT | 1 | 1 | B.1.1.28 | 0.000311 |
S | 23 | Q23Q | caA | caG | 1 | 1 | B.1.1.284 | 0.000107 |
S | 23 | Q23R | cAa | cGa | 1 | 1 | B.1.1.291 | 0.000742 |
S | 23 | Q23R | cAa | cGa | 1 | 1 | B.1.1.306 | 0.000438 |
S | 23 | Q23del | CAA | --- | 1 | 1 | B.1.1.306 | 0.000438 |
S | 23 | Q23del | CAA | --- | 1 | 1 | B.1.1.315 | 0.008475 |
S | 23 | Q23R | cAa | cGa | 1 | 1 | B.1.1.39 | 0.00051 |
S | 23 | Q23del | CAA | --- | 1 | 1 | B.1.1.401 | 0.066667 |
S | 23 | Q23H | caA | caT | 1 | 1 | B.1.1.411 | 0.014706 |
S | 23 | Q23Q | caA | caG | 1 | 1 | B.1.1.411 | 0.014706 |
S | 23 | Q23R | cAa | cGa | 1 | 1 | B.1.1.420 | 0.001006 |
S | 23 | Q23del | CAA | --- | 1 | 1 | B.1.1.46 | 0.004367 |
S | 23 | Q23K | Caa | Aaa | 1 | 1 | B.1.1.519 | 0.00004 |
S | 23 | Q23K | Caa | Aaa | 1 | 1 | B.1.1.7 | 0.000001 |
S | 23 | Q23W | CAA | TGG | 1 | 1 | B.1.1.7 | 0.000001 |
S | 23 | Q23X | Caa | Taa | 1 | 1 | B.1.128 | 0.000635 |
S | 23 | Q23L | cAa | cTa | 1 | 1 | B.1.160 | 0.000031 |
S | 23 | Q23X | Caa | Taa | 1 | 1 | B.1.177.12 | 0.000152 |
S | 23 | Q23H | caA | caT | 1 | 1 | B.1.177.21 | 0.000076 |
S | 23 | Q23R | cAa | cGa | 1 | 1 | B.1.177.21 | 0.000076 |
S | 23 | Q23X | Caa | Taa | 1 | 1 | B.1.177.4 | 0.000211 |
S | 23 | Q23R | cAa | cGa | 1 | 1 | B.1.177.6 | 0.000977 |
S | 23 | Q23R | cAa | cGa | 1 | 1 | B.1.177.63 | 0.002703 |
S | 23 | Q23del | CAA | --- | 1 | 1 | B.1.177.68 | 0.015152 |
S | 23 | Q23R | cAa | cGa | 1 | 1 | B.1.177.83 | 0.001481 |
S | 23 | Q23del | CAA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
S | 23 | Q23X | Caa | Taa | 1 | 1 | B.1.177.9 | 0.001332 |
S | 23 | Q23del | CAA | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 23 | Q23K | Caa | Aaa | 1 | 1 | B.1.2 | 0.000009 |
S | 23 | Q23Q | caA | caG | 1 | 1 | B.1.210 | 0.002132 |
S | 23 | Q23del | CAA | --- | 1 | 1 | B.1.221 | 0.000071 |
S | 23 | Q23R | cAa | cGa | 1 | 1 | B.1.232 | 0.000537 |
S | 23 | Q23Q | caA | caG | 1 | 1 | B.1.232 | 0.000537 |
S | 23 | Q23K | Caa | Aaa | 1 | 1 | B.1.232 | 0.000537 |
S | 23 | Q23L | cAa | cTa | 1 | 1 | B.1.234 | 0.000132 |
S | 23 | Q23X | Caa | Taa | 1 | 1 | B.1.234 | 0.000132 |
S | 23 | Q23L | cAa | cTa | 1 | 1 | B.1.243 | 0.00007 |
S | 23 | Q23del | CAA | --- | 1 | 1 | B.1.36 | 0.000146 |
S | 23 | Q23R | cAa | cGa | 1 | 1 | B.1.36.10 | 0.004785 |
S | 23 | Q23R | cAa | cGa | 1 | 1 | B.1.36.17 | 0.000494 |
S | 23 | Q23X | Caa | Taa | 1 | 1 | B.1.36.17 | 0.000494 |
S | 23 | Q23L | cAa | cTa | 1 | 1 | B.1.36.18 | 0.00042 |
S | 23 | Q23R | cAa | cGa | 1 | 1 | B.1.36.18 | 0.00042 |
S | 23 | Q23H | caA | caC | 1 | 1 | B.1.36.35 | 0.002604 |
S | 23 | Q23R | cAa | cGa | 1 | 1 | B.1.36.8 | 0.001 |
S | 23 | Q23X | Caa | Taa | 1 | 1 | B.1.369 | 0.000285 |
S | 23 | Q23E | Caa | Gaa | 1 | 1 | B.1.382 | 0.008929 |
S | 23 | Q23R | cAa | cGa | 1 | 1 | B.1.397 | 0.004854 |
S | 23 | Q23E | Caa | Gaa | 1 | 1 | B.1.404 | 0.001302 |
S | 23 | Q23H | caA | caC | 1 | 1 | B.1.416 | 0.001269 |
S | 23 | Q23R | cAa | cGa | 1 | 1 | B.1.427 | 0.00005 |
S | 23 | Q23X | Caa | Taa | 1 | 1 | B.1.427 | 0.00005 |
S | 23 | Q23H | caA | caC | 1 | 1 | B.1.427 | 0.00005 |
S | 23 | Q23L | cAa | cTa | 1 | 1 | B.1.428 | 0.00102 |
S | 23 | Q23H | caA | caT | 1 | 1 | B.1.428.2 | 0.033333 |
S | 23 | Q23del | CAA | --- | 1 | 1 | B.1.429 | 0.000024 |
S | 23 | Q23H | caA | caT | 1 | 1 | B.1.438.1 | 0.000107 |
S | 23 | Q23Q | caA | caG | 1 | 1 | B.1.499 | 0.00105 |
S | 23 | Q23L | cAa | cTa | 1 | 1 | B.1.517 | 0.000427 |
S | 23 | Q23L | cAa | cTa | 1 | 1 | B.1.525 | 0.000113 |
S | 23 | Q23L | cAa | cTa | 1 | 1 | B.1.526 | 0.000024 |
S | 23 | Q23R | cAa | cGa | 1 | 1 | B.1.530 | 0.007143 |
S | 23 | Q23R | cAa | cGa | 1 | 1 | B.1.533 | 0.009615 |
S | 23 | Q23R | cAa | cGa | 1 | 1 | B.1.565 | 0.00081 |
S | 23 | Q23X | Caa | Taa | 1 | 1 | B.1.576 | 0.000907 |
S | 23 | Q23X | Caa | Taa | 1 | 1 | B.1.582 | 0.000491 |
S | 23 | Q23X | Caa | Taa | 1 | 1 | B.1.596 | 0.000087 |
S | 23 | Q23K | Caa | Aaa | 1 | 1 | B.1.596 | 0.000087 |
S | 23 | Q23del | CAA | --- | 1 | 1 | B.1.605 | 0.005952 |
S | 23 | Q23X | Caa | Taa | 1 | 1 | B.1.617.1 | 0.000129 |
S | 23 | Q23E | Caa | Gaa | 1 | 1 | B.1.617.2 | 0.000004 |
S | 23 | Q23del | CAA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
S | 23 | Q23L | cAa | cTa | 1 | 1 | B.1.619.1 | 0.000641 |
S | 23 | Q23del | CAA | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 23 | Q23Q | caA | caG | 1 | 1 | B.1.628 | 0.000352 |
S | 23 | Q23K | Caa | Aaa | 1 | 1 | B.1.637 | 0.000073 |
S | 23 | Q23X | Caa | Taa | 1 | 1 | B.1.637 | 0.000073 |
S | 23 | Q23R | cAa | cGa | 1 | 1 | B.1.637 | 0.000073 |
S | 23 | Q23K | Caa | Aaa | 1 | 1 | B.4 | 0.002208 |
S | 23 | Q23del | CAA | --- | 1 | 1 | B.61 | 0.005747 |
S | 23 | Q23R | cAa | cGa | 1 | 1 | C.28 | 0.04 |
S | 23 | Q23F | CAA | TTT | 1 | 1 | C.36.3 | 0.000567 |
S | 23 | Q23X | Caa | Taa | 1 | 1 | D.2 | 0.000075 |
S | 23 | Q23K | Caa | Aaa | 1 | 1 | N.1 | 0.016949 |
S | 23 | Q23K | Caa | Aaa | 1 | 1 | N.10 | 0.029412 |
S | 23 | Q23K | Caa | Aaa | 1 | 1 | N.3 | 0.005814 |
S | 23 | Q23R | cAa | cGa | 1 | 1 | P.1.1 | 0.000318 |
S | 23 | Q23R | cAa | cGa | 1 | 1 | P.1.10 | 0.000269 |
S | 23 | Q23X | Caa | Taa | 1 | 1 | P.1.12 | 0.000484 |
S | 23 | Q23L | cAa | cTa | 1 | 1 | P.1.14 | 0.000048 |
S | 23 | Q23H | caA | caC | 1 | 1 | P.1.15 | 0.000232 |
S | 23 | Q23R | cAa | cGa | 1 | 1 | P.1.15 | 0.000232 |
S | 23 | Q23K | Caa | Aaa | 1 | 1 | P.2 | 0.000187 |
S | 23 | Q23L | cAa | cTa | 1 | 1 | Q.1 | 0.000126 |
S | 23 | Q23L | cAa | cTa | 1 | 1 | Q.3 | 0.000145 |
S | 23 | Q23H | caA | caC | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|