CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 23

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S23Q23HnonsyncaAcaT114510120.88384321629-21631
S23Q23HnonsyncaAcaC11451330.11615721629-21631
S23Q23RnonsyncAacGa6396340.99217521629-21631
S23Q23RnonsyncAAcGG63930.0046948421629-21631
S23Q23RnonsyncAAcGT63920.0031298921629-21631
S23Q23PnonsyncAacCa269269121629-21631
S23Q23LnonsyncAacTa154154121629-21631
S23Q23QsyncaAcaG9393121629-21631
S23Q23deldelCAA---9191121629-21631
S23Q23KnonsynCaaAaa8989121629-21631
S23Q23XnonsynCaaTaa4242121629-21631
S23Q23EnonsynCaaGaa42400.95238121629-21631
S23Q23EnonsynCaAGaG4220.04761921629-21631
S23Q23FnonsynCAATTT55121629-21631
S23Q23GnonsynCAAGGT420.521629-21631
S23Q23GnonsynCAAGGG420.521629-21631
S23Q23TnonsynCAaACa22121629-21631
S23Q23DnonsynCaAGaT22121629-21631
S23Q23del1delcAac-a11121629-21631
S23Q23WnonsynCAATGG11121629-21631
S23Q23InonsynCAaATa11121629-21631

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S23Q23HcaAcaT10121145All0.000194
S23Q23HcaAcaC1331145All0.000025
S23Q23HcaAcaT939939B.1.177.60.916992
S23Q23RcAacGa634639All0.000121
S23Q23RcAAcGG3639All0.000001
S23Q23RcAAcGT2639All0
S23Q23RcAacGa274274B.1.360.039977
S23Q23PcAacCa269269All0.000051
S23Q23PcAacCa241241AY.40.000375
S23Q23LcAacTa154154All0.000029
S23Q23QcaAcaG9393All0.000018
S23Q23RcAacGa9292B.1.1770.001211
S23Q23delCAA---9191All0.000017
S23Q23KCaaAaa8989All0.000017
S23Q23KCaaAaa5959B.1.1.330.024832
S23Q23RcAacGa5757P.10.000898
S23Q23HcaAcaC3549B.1.1.70.000031
S23Q23HcaAcaT1449B.1.1.70.000013
S23Q23LcAacTa4545B.1.1.70.00004
S23Q23XCaaTaa4242All0.000008
S23Q23ECaaGaa4042All0.000008
S23Q23ECaAGaG242All0
S23Q23RcAacGa3838AY.390.000939
S23Q23RcAacGa2626B.10.000238
S23Q23ECaaGaa2525AY.440.000152
S23Q23RcAacGa1616B.1.1.70.000014
S23Q23QcaAcaG1616B.1.177.590.258065
S23Q23LcAacTa1414AY.40.000022
S23Q23QcaAcaG1414B.1.1.70.000013
S23Q23HcaAcaC1314B.1.617.20.000049
S23Q23HcaAcaT114B.1.617.20.000004
S23Q23HcaAcaT1213AY.40.000019
S23Q23HcaAcaC113AY.40.000002
S23Q23RcAacGa1212AY.1030.000075
S23Q23LcAacTa1212AY.1190.000424
S23Q23QcaAcaG1212AY.440.000073
S23Q23RcAacGa1212B.1.1.4320.01519
S23Q23HcaAcaT1112B.1.1770.000145
S23Q23HcaAcaC112B.1.1770.000013
S23Q23delCAA---1111B.1.1.70.00001
S23Q23delCAA---1111B.1.4270.000555
S23Q23HcaAcaC1111B.1.6210.000974
S23Q23delCAA---1010AY.330.000668
S23Q23HcaAcaT710B.10.000064
S23Q23HcaAcaC310B.10.000027
S23Q23RcAacGa1010B.1.617.20.000038
S23Q23HcaAcaC99AY.420.000362
S23Q23HcaAcaC99B.1.1.5190.000357
S23Q23RcAacGa99B.1.1.5190.000357
S23Q23RcAacGa99B.1.110.30.006466
S23Q23RcAacGa88AY.40.000012
S23Q23HcaAcaC88AY.950.006088
S23Q23LcAacTa88B.1.177.860.001468
S23Q23PcAacCa88B.1.617.20.00003
S23Q23LcAacTa77AY.30.00007
S23Q23HcaAcaC77AY.99.10.01087
S23Q23HcaAcaC67B.1.10.000109
S23Q23HcaAcaT17B.1.10.000018
S23Q23PcAacCa66AY.470.000187
S23Q23RcAacGa66B.1.10.000109
S23Q23delCAA---66B.1.10.000109
S23Q23HcaAcaC36B.1.2580.0002
S23Q23HcaAcaT36B.1.2580.0002
S23Q23FCAATTT55All0.000001
S23Q23delCAA---55AY.1030.000031
S23Q23XCaaTaa55AY.40.000008
S23Q23RcAacGa45AY.430.000018
S23Q23RcAAcGG15AY.430.000004
S23Q23KCaaAaa55B.10.000046
S23Q23QcaAcaG55B.10.000046
S23Q23LcAacTa55B.1.3200.006227
S23Q23ECaaGaa55B.1.3510.000149
S23Q23RcAacGa55B.1.4290.000118
S23Q23RcAacGa55B.1.4560.01634
S23Q23HcaAcaT55B.1.617.10.000645
S23Q23LcAacTa55P.10.000079
S23Q23RcAAcGG240.111111
S23Q23GCAAGGG240.111111
S23Q23GCAAGGT240.111111
S23Q23RcAAcGT240.111111
S23Q23GCAAGGG24All0
S23Q23GCAAGGT24All0
S23Q23HcaAcaC24AY.1030.000012
S23Q23HcaAcaT24AY.1030.000012
S23Q23delCAA---44AY.1200.000149
S23Q23delCAA---44AY.40.000006
S23Q23delCAA---44AY.430.000018
S23Q23XCaaTaa44B.10.000037
S23Q23ECaaGaa44B.1.10.000073
S23Q23FCAATTT44B.1.1.70.000004
S23Q23XCaaTaa44B.1.1.70.000004
S23Q23QcaAcaG44B.1.20.000035
S23Q23LcAacTa44B.1.20.000035
S23Q23HcaAcaC34B.1.20.000026
S23Q23HcaAcaT14B.1.20.000009
S23Q23QcaAcaG44B.1.5260.000094
S23Q23HcaAcaC44C.360.003643
S23Q23RcAacGa33AY.1020.00008
S23Q23KCaaAaa33AY.1210.000406
S23Q23PcAacCa33AY.200.000117
S23Q23HcaAcaT33AY.250.000018
S23Q23LcAacTa33AY.430.000013
S23Q23HcaAcaC33AY.50.000062
S23Q23QcaAcaG33B.1.1770.00004
S23Q23RcAacGa33B.1.2600.010033
S23Q23delCAA---33B.1.5250.000339
S23Q23LcAacTa33B.1.617.20.000011
S23Q23QcaAcaG33B.1.617.20.000011
S23Q23LcAacTa33C.370.000348
S23Q23delCAA---33P.10.000047
S23Q23DCaAGaT220.111111
S23Q23HcaAcaT220.111111
S23Q23ECaAGaG220.111111
S23Q23QcaAcaG220.111111
S23Q23DCaAGaT22All0
S23Q23TCAaACa22All0
S23Q23QcaAcaG22AY.1030.000012
S23Q23QcaAcaG22AY.1180.000125
S23Q23QcaAcaG22AY.250.000012
S23Q23LcAacTa22AY.250.000012
S23Q23PcAacCa22AY.270.000129
S23Q23LcAacTa22AY.290.000032
S23Q23XCaaTaa22AY.390.000049
S23Q23QcaAcaG22AY.40.000003
S23Q23XCaaTaa22AY.430.000009
S23Q23LcAacTa22AY.470.000062
S23Q23RcAacGa22AY.470.000062
S23Q23HcaAcaT22AY.750.000112
S23Q23RcAacGa22AY.9.10.000167
S23Q23delCAA---22B.10.000018
S23Q23LcAacTa22B.10.000018
S23Q23KCaaAaa22B.1.10.000036
S23Q23RcAacGa22B.1.1.1760.000879
S23Q23QcaAcaG22B.1.1.2160.001781
S23Q23HcaAcaC22B.1.1.2220.000408
S23Q23PcAacCa22B.1.1.70.000002
S23Q23LcAacTa22B.1.1770.000026
S23Q23XCaaTaa22B.1.20.000018
S23Q23RcAacGa22B.1.36.160.002849
S23Q23LcAacTa22B.1.36.220.002415
S23Q23LcAacTa22B.1.3690.00057
S23Q23QcaAcaG22B.1.4000.000858
S23Q23TCAaACa22B.1.4290.000047
S23Q23QcaAcaG22B.1.466.20.000782
S23Q23RcAacGa22B.1.4680.011429
S23Q23RcAacGa22B.1.617.10.000258
S23Q23KCaaAaa22B.1.617.20.000008
S23Q23LcAacTa22C.160.002121
S23Q23HcaAcaC22C.170.111111
S23Q23KCaaAaa22D.20.00015
S23Q23PcAacCa22P.10.000032
S23Q23RcAacGa22P.1.120.000968
S23Q23HcaAcaT22Q.80.00033
S23Q23ICAaATa110.055556
S23Q23KCaaAaa110.055556
S23Q23LcAacTa110.055556
S23Q23delCAA---11A.2.40.003367
S23Q23HcaAcaC11A.2.40.003367
S23Q23LcAacTa11A.2.40.003367
S23Q23RcAacGa11A.2.50.000499
S23Q23ECaaGaa11A.2.5.20.001572
S23Q23HcaAcaT11A.2.5.20.001572
S23Q23ICAaATa11All0
S23Q23WCAATGG11All0
S23Q23del1cAac-a11All0
S23Q23RcAacGa11AU.20.002421
S23Q23PcAacCa11AY.1000.000046
S23Q23LcAacTa11AY.1000.000046
S23Q23XCaaTaa11AY.1000.000046
S23Q23delCAA---11AY.1000.000046
S23Q23delCAA---11AY.1010.00049
S23Q23LcAacTa11AY.1020.000027
S23Q23LcAacTa11AY.1030.000006
S23Q23ECaaGaa11AY.1030.000006
S23Q23LcAacTa11AY.1160.000287
S23Q23LcAacTa11AY.116.10.000311
S23Q23XCaaTaa11AY.1180.000063
S23Q23LcAacTa11AY.1210.000135
S23Q23HcaAcaC11AY.200.000039
S23Q23LcAacTa11AY.200.000039
S23Q23LcAacTa11AY.230.00007
S23Q23QcaAcaG11AY.23.10.000417
S23Q23delCAA---11AY.250.000006
S23Q23LcAacTa11AY.260.000028
S23Q23QcaAcaG11AY.290.000016
S23Q23HcaAcaC11AY.290.000016
S23Q23delCAA---11AY.30.00001
S23Q23QcaAcaG11AY.30.00001
S23Q23LcAacTa11AY.3.10.000085
S23Q23delCAA---11AY.320.000532
S23Q23QcaAcaG11AY.34.10.00051
S23Q23RcAacGa11AY.360.000148
S23Q23HcaAcaT11AY.390.000025
S23Q23delCAA---11AY.390.000025
S23Q23delCAA---11AY.39.10.00004
S23Q23KCaaAaa11AY.40.000002
S23Q23XCaaTaa11AY.4.20.000022
S23Q23LcAacTa11AY.4.20.000022
S23Q23XCaaTaa11AY.400.000964
S23Q23delCAA---11AY.420.00004
S23Q23KCaaAaa11AY.420.00004
S23Q23PcAacCa11AY.430.000004
S23Q23QcaAcaG11AY.430.000004
S23Q23KCaaAaa11AY.430.000004
S23Q23HcaAcaC11AY.430.000004
S23Q23XCaaTaa11AY.440.000006
S23Q23RcAacGa11AY.440.000006
S23Q23HcaAcaC11AY.440.000006
S23Q23delCAA---11AY.440.000006
S23Q23LcAacTa11AY.440.000006
S23Q23RcAacGa11AY.450.000122
S23Q23HcaAcaC11AY.460.000104
S23Q23XCaaTaa11AY.460.000104
S23Q23ECaaGaa11AY.460.000104
S23Q23PcAacCa11AY.46.40.000165
S23Q23QcaAcaG11AY.46.40.000165
S23Q23QcaAcaG11AY.470.000031
S23Q23QcaAcaG11AY.510.000909
S23Q23delCAA---11AY.540.000095
S23Q23PcAacCa11AY.60.000041
S23Q23delCAA---11AY.680.000274
S23Q23RcAacGa11AY.70.000196
S23Q23delCAA---11AY.75.10.00018
S23Q23RcAacGa11AY.75.10.00018
S23Q23PcAacCa11AY.850.000427
S23Q23QcaAcaG11AY.90.000068
S23Q23RcAacGa11AY.9.20.000037
S23Q23delCAA---11AY.980.000079
S23Q23LcAacTa11AY.980.000079
S23Q23LcAacTa11AY.98.10.000048
S23Q23KCaaAaa11AY.99.10.001553
S23Q23del1cAac-a11B0.000128
S23Q23XCaaTaa11B.1.10.000018
S23Q23LcAacTa11B.1.10.000018
S23Q23QcaAcaG11B.1.1.1700.001247
S23Q23XCaaTaa11B.1.1.2170.003636
S23Q23HcaAcaT11B.1.1.280.000311
S23Q23QcaAcaG11B.1.1.2840.000107
S23Q23RcAacGa11B.1.1.2910.000742
S23Q23RcAacGa11B.1.1.3060.000438
S23Q23delCAA---11B.1.1.3060.000438
S23Q23delCAA---11B.1.1.3150.008475
S23Q23RcAacGa11B.1.1.390.00051
S23Q23delCAA---11B.1.1.4010.066667
S23Q23HcaAcaT11B.1.1.4110.014706
S23Q23QcaAcaG11B.1.1.4110.014706
S23Q23RcAacGa11B.1.1.4200.001006
S23Q23delCAA---11B.1.1.460.004367
S23Q23KCaaAaa11B.1.1.5190.00004
S23Q23KCaaAaa11B.1.1.70.000001
S23Q23WCAATGG11B.1.1.70.000001
S23Q23XCaaTaa11B.1.1280.000635
S23Q23LcAacTa11B.1.1600.000031
S23Q23XCaaTaa11B.1.177.120.000152
S23Q23HcaAcaT11B.1.177.210.000076
S23Q23RcAacGa11B.1.177.210.000076
S23Q23XCaaTaa11B.1.177.40.000211
S23Q23RcAacGa11B.1.177.60.000977
S23Q23RcAacGa11B.1.177.630.002703
S23Q23delCAA---11B.1.177.680.015152
S23Q23RcAacGa11B.1.177.830.001481
S23Q23delCAA---11B.1.177.830.001481
S23Q23XCaaTaa11B.1.177.90.001332
S23Q23delCAA---11B.1.20.000009
S23Q23KCaaAaa11B.1.20.000009
S23Q23QcaAcaG11B.1.2100.002132
S23Q23delCAA---11B.1.2210.000071
S23Q23RcAacGa11B.1.2320.000537
S23Q23QcaAcaG11B.1.2320.000537
S23Q23KCaaAaa11B.1.2320.000537
S23Q23LcAacTa11B.1.2340.000132
S23Q23XCaaTaa11B.1.2340.000132
S23Q23LcAacTa11B.1.2430.00007
S23Q23delCAA---11B.1.360.000146
S23Q23RcAacGa11B.1.36.100.004785
S23Q23RcAacGa11B.1.36.170.000494
S23Q23XCaaTaa11B.1.36.170.000494
S23Q23LcAacTa11B.1.36.180.00042
S23Q23RcAacGa11B.1.36.180.00042
S23Q23HcaAcaC11B.1.36.350.002604
S23Q23RcAacGa11B.1.36.80.001
S23Q23XCaaTaa11B.1.3690.000285
S23Q23ECaaGaa11B.1.3820.008929
S23Q23RcAacGa11B.1.3970.004854
S23Q23ECaaGaa11B.1.4040.001302
S23Q23HcaAcaC11B.1.4160.001269
S23Q23RcAacGa11B.1.4270.00005
S23Q23XCaaTaa11B.1.4270.00005
S23Q23HcaAcaC11B.1.4270.00005
S23Q23LcAacTa11B.1.4280.00102
S23Q23HcaAcaT11B.1.428.20.033333
S23Q23delCAA---11B.1.4290.000024
S23Q23HcaAcaT11B.1.438.10.000107
S23Q23QcaAcaG11B.1.4990.00105
S23Q23LcAacTa11B.1.5170.000427
S23Q23LcAacTa11B.1.5250.000113
S23Q23LcAacTa11B.1.5260.000024
S23Q23RcAacGa11B.1.5300.007143
S23Q23RcAacGa11B.1.5330.009615
S23Q23RcAacGa11B.1.5650.00081
S23Q23XCaaTaa11B.1.5760.000907
S23Q23XCaaTaa11B.1.5820.000491
S23Q23XCaaTaa11B.1.5960.000087
S23Q23KCaaAaa11B.1.5960.000087
S23Q23delCAA---11B.1.6050.005952
S23Q23XCaaTaa11B.1.617.10.000129
S23Q23ECaaGaa11B.1.617.20.000004
S23Q23delCAA---11B.1.617.20.000004
S23Q23LcAacTa11B.1.619.10.000641
S23Q23delCAA---11B.1.6200.000946
S23Q23QcaAcaG11B.1.6280.000352
S23Q23KCaaAaa11B.1.6370.000073
S23Q23XCaaTaa11B.1.6370.000073
S23Q23RcAacGa11B.1.6370.000073
S23Q23KCaaAaa11B.40.002208
S23Q23delCAA---11B.610.005747
S23Q23RcAacGa11C.280.04
S23Q23FCAATTT11C.36.30.000567
S23Q23XCaaTaa11D.20.000075
S23Q23KCaaAaa11N.10.016949
S23Q23KCaaAaa11N.100.029412
S23Q23KCaaAaa11N.30.005814
S23Q23RcAacGa11P.1.10.000318
S23Q23RcAacGa11P.1.100.000269
S23Q23XCaaTaa11P.1.120.000484
S23Q23LcAacTa11P.1.140.000048
S23Q23HcaAcaC11P.1.150.000232
S23Q23RcAacGa11P.1.150.000232
S23Q23KCaaAaa11P.20.000187
S23Q23LcAacTa11Q.10.000126
S23Q23LcAacTa11Q.30.000145
S23Q23HcaAcaC11R.10.00009