CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 221 | S221S | syn | tcG | tcT | 11997 | 10117 | 0.843294 | 22223-22225 | |
S | 221 | S221S | syn | tcG | tcA | 11997 | 1294 | 0.10786 | 22223-22225 | |
S | 221 | S221S | syn | tcG | tcC | 11997 | 586 | 0.0488455 | 22223-22225 | |
S | 221 | S221L | nonsyn | tCg | tTg | 10622 | 10622 | 1 | 22223-22225 | |
S | 221 | S221A | nonsyn | Tcg | Gcg | 331 | 331 | 1 | 22223-22225 | |
S | 221 | S221del | del | TCG | --- | 162 | 162 | 1 | 22223-22225 | |
S | 221 | S221W | nonsyn | tCg | tGg | 26 | 26 | 1 | 22223-22225 | |
S | 221 | S221P | nonsyn | Tcg | Ccg | 22 | 20 | 0.909091 | 22223-22225 | |
S | 221 | S221P | nonsyn | TcG | CcC | 22 | 2 | 0.0909091 | 22223-22225 | |
S | 221 | S221F | nonsyn | tCG | tTT | 21 | 18 | 0.857143 | 22223-22225 | |
S | 221 | S221F | nonsyn | tCG | tTC | 21 | 3 | 0.142857 | 22223-22225 | |
S | 221 | S221X | nonsyn | tCg | tAg | 20 | 18 | 0.9 | 22223-22225 | |
S | 221 | S221X | nonsyn | tCG | tAA | 20 | 2 | 0.1 | 22223-22225 | |
S | 221 | S221T | nonsyn | Tcg | Acg | 14 | 11 | 0.785714 | 22223-22225 | |
S | 221 | S221T | nonsyn | TcG | AcT | 14 | 3 | 0.214286 | 22223-22225 | |
S | 221 | S221del1 | del | tCg | t-g | 9 | 4 | 0.444444 | 22223-22225 | |
S | 221 | S221del1 | del | tcG | tc- | 9 | 3 | 0.333333 | 22223-22225 | |
S | 221 | S221del1 | del | Tcg | -cg | 9 | 1 | 0.111111 | 22223-22225 | |
S | 221 | S221del1 | del | TCG | -NN | 9 | 1 | 0.111111 | 22223-22225 | |
S | 221 | S221K | nonsyn | TCg | AAg | 2 | 2 | 1 | 22223-22225 | |
S | 221 | S221M | nonsyn | TCg | ATg | 2 | 2 | 1 | 22223-22225 | |
S | 221 | S221Y | nonsyn | tCG | tAC | 2 | 2 | 1 | 22223-22225 | |
S | 221 | S221H | nonsyn | TCG | CAC | 2 | 2 | 1 | 22223-22225 | |
S | 221 | S221Q | nonsyn | TCg | CAg | 2 | 2 | 1 | 22223-22225 | |
S | 221 | S221del2 | del | TCg | --g | 1 | 1 | 1 | 22223-22225 | |
S | 221 | S221I | nonsyn | TCG | ATC | 1 | 1 | 1 | 22223-22225 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 221 | S221S | tcG | tcT | 10117 | 11997 | All | 0.001935 |
S | 221 | S221S | tcG | tcA | 1294 | 11997 | All | 0.000247 |
S | 221 | S221S | tcG | tcC | 586 | 11997 | All | 0.000112 |
S | 221 | S221L | tCg | tTg | 10622 | 10622 | All | 0.002032 |
S | 221 | S221L | tCg | tTg | 3739 | 3739 | B.1.1.7 | 0.003347 |
S | 221 | S221S | tcG | tcT | 1928 | 2168 | B.1.1.7 | 0.001726 |
S | 221 | S221S | tcG | tcA | 230 | 2168 | B.1.1.7 | 0.000206 |
S | 221 | S221S | tcG | tcC | 10 | 2168 | B.1.1.7 | 0.000009 |
S | 221 | S221L | tCg | tTg | 1662 | 1662 | AY.25 | 0.009997 |
S | 221 | S221S | tcG | tcT | 1287 | 1362 | AY.4 | 0.002003 |
S | 221 | S221S | tcG | tcA | 62 | 1362 | AY.4 | 0.000096 |
S | 221 | S221S | tcG | tcC | 13 | 1362 | AY.4 | 0.00002 |
S | 221 | S221L | tCg | tTg | 1056 | 1056 | AY.4 | 0.001644 |
S | 221 | S221S | tcG | tcT | 750 | 811 | B.1.617.2 | 0.002824 |
S | 221 | S221S | tcG | tcA | 41 | 811 | B.1.617.2 | 0.000154 |
S | 221 | S221S | tcG | tcC | 20 | 811 | B.1.617.2 | 0.000075 |
S | 221 | S221L | tCg | tTg | 705 | 705 | AY.20 | 0.0274 |
S | 221 | S221S | tcG | tcT | 530 | 530 | B.1.427 | 0.026764 |
S | 221 | S221S | tcG | tcT | 391 | 458 | AY.44 | 0.00238 |
S | 221 | S221S | tcG | tcA | 65 | 458 | AY.44 | 0.000396 |
S | 221 | S221S | tcG | tcC | 2 | 458 | AY.44 | 0.000012 |
S | 221 | S221S | tcG | tcT | 412 | 456 | AY.43 | 0.001825 |
S | 221 | S221S | tcG | tcC | 25 | 456 | AY.43 | 0.000111 |
S | 221 | S221S | tcG | tcA | 19 | 456 | AY.43 | 0.000084 |
S | 221 | S221S | tcG | tcT | 384 | 423 | AY.26 | 0.010871 |
S | 221 | S221S | tcG | tcA | 39 | 423 | AY.26 | 0.001104 |
S | 221 | S221L | tCg | tTg | 368 | 368 | B.1.617.2 | 0.001386 |
S | 221 | S221S | tcG | tcT | 362 | 366 | AY.5 | 0.007475 |
S | 221 | S221S | tcG | tcC | 2 | 366 | AY.5 | 0.000041 |
S | 221 | S221S | tcG | tcA | 2 | 366 | AY.5 | 0.000041 |
S | 221 | S221S | tcG | tcT | 348 | 363 | B.1.2 | 0.003064 |
S | 221 | S221S | tcG | tcA | 15 | 363 | B.1.2 | 0.000132 |
S | 221 | S221A | Tcg | Gcg | 331 | 331 | All | 0.000063 |
S | 221 | S221S | tcG | tcC | 299 | 315 | AY.47 | 0.0093 |
S | 221 | S221S | tcG | tcT | 14 | 315 | AY.47 | 0.000435 |
S | 221 | S221S | tcG | tcA | 2 | 315 | AY.47 | 0.000062 |
S | 221 | S221L | tCg | tTg | 284 | 284 | AY.43 | 0.001258 |
S | 221 | S221L | tCg | tTg | 279 | 279 | AY.44 | 0.001698 |
S | 221 | S221S | tcG | tcT | 197 | 240 | B.1 | 0.001804 |
S | 221 | S221S | tcG | tcA | 41 | 240 | B.1 | 0.000376 |
S | 221 | S221S | tcG | tcC | 2 | 240 | B.1 | 0.000018 |
S | 221 | S221L | tCg | tTg | 217 | 217 | B.1.526 | 0.0051 |
S | 221 | S221L | tCg | tTg | 209 | 209 | AY.3 | 0.002079 |
S | 221 | S221S | tcG | tcT | 203 | 203 | B.1.366 | 0.990244 |
S | 221 | S221L | tCg | tTg | 202 | 202 | AY.46.6 | 0.014586 |
S | 221 | S221S | tcG | tcA | 179 | 194 | B.1.438.1 | 0.0192 |
S | 221 | S221S | tcG | tcT | 15 | 194 | B.1.438.1 | 0.001609 |
S | 221 | S221L | tCg | tTg | 188 | 188 | AY.103 | 0.001167 |
S | 221 | S221del | TCG | --- | 162 | 162 | All | 0.000031 |
S | 221 | S221S | tcG | tcT | 158 | 158 | B.1.214.2 | 0.094724 |
S | 221 | S221S | tcG | tcT | 99 | 153 | AY.103 | 0.000615 |
S | 221 | S221S | tcG | tcA | 47 | 153 | AY.103 | 0.000292 |
S | 221 | S221S | tcG | tcC | 7 | 153 | AY.103 | 0.000043 |
S | 221 | S221S | tcG | tcT | 118 | 139 | AY.25 | 0.00071 |
S | 221 | S221S | tcG | tcA | 17 | 139 | AY.25 | 0.000102 |
S | 221 | S221S | tcG | tcC | 4 | 139 | AY.25 | 0.000024 |
S | 221 | S221S | tcG | tcT | 117 | 129 | AY.102 | 0.003102 |
S | 221 | S221S | tcG | tcA | 12 | 129 | AY.102 | 0.000318 |
S | 221 | S221S | tcG | tcT | 88 | 123 | P.1 | 0.001386 |
S | 221 | S221S | tcG | tcA | 25 | 123 | P.1 | 0.000394 |
S | 221 | S221S | tcG | tcC | 10 | 123 | P.1 | 0.000158 |
S | 221 | S221S | tcG | tcC | 90 | 105 | AY.6 | 0.003702 |
S | 221 | S221S | tcG | tcT | 14 | 105 | AY.6 | 0.000576 |
S | 221 | S221S | tcG | tcA | 1 | 105 | AY.6 | 0.000041 |
S | 221 | S221S | tcG | tcT | 94 | 103 | AY.61 | 0.009849 |
S | 221 | S221S | tcG | tcA | 8 | 103 | AY.61 | 0.000838 |
S | 221 | S221S | tcG | tcC | 1 | 103 | AY.61 | 0.000105 |
S | 221 | S221S | tcG | tcT | 65 | 103 | B.1.177 | 0.000856 |
S | 221 | S221S | tcG | tcA | 35 | 103 | B.1.177 | 0.000461 |
S | 221 | S221S | tcG | tcC | 3 | 103 | B.1.177 | 0.00004 |
S | 221 | S221S | tcG | tcT | 87 | 94 | B.1.1 | 0.001578 |
S | 221 | S221S | tcG | tcA | 7 | 94 | B.1.1 | 0.000127 |
S | 221 | S221S | tcG | tcT | 91 | 94 | B.1.160 | 0.002838 |
S | 221 | S221S | tcG | tcA | 3 | 94 | B.1.160 | 0.000094 |
S | 221 | S221S | tcG | tcT | 89 | 91 | AY.39 | 0.002199 |
S | 221 | S221S | tcG | tcA | 2 | 91 | AY.39 | 0.000049 |
S | 221 | S221L | tCg | tTg | 90 | 90 | B.1 | 0.000824 |
S | 221 | S221S | tcG | tcT | 79 | 83 | AY.119 | 0.002789 |
S | 221 | S221S | tcG | tcA | 4 | 83 | AY.119 | 0.000141 |
S | 221 | S221S | tcG | tcT | 59 | 81 | AY.3 | 0.000587 |
S | 221 | S221S | tcG | tcA | 21 | 81 | AY.3 | 0.000209 |
S | 221 | S221S | tcG | tcC | 1 | 81 | AY.3 | 0.00001 |
S | 221 | S221L | tCg | tTg | 78 | 78 | AY.29 | 0.00123 |
S | 221 | S221L | tCg | tTg | 78 | 78 | B.1.2 | 0.000687 |
S | 221 | S221S | tcG | tcT | 77 | 77 | B.1.320 | 0.09589 |
S | 221 | S221S | tcG | tcT | 71 | 72 | B.1.1.70 | 0.024216 |
S | 221 | S221S | tcG | tcA | 1 | 72 | B.1.1.70 | 0.000341 |
S | 221 | S221A | Tcg | Gcg | 67 | 67 | AY.102 | 0.001776 |
S | 221 | S221S | tcG | tcT | 54 | 66 | B.1.526 | 0.001269 |
S | 221 | S221S | tcG | tcA | 12 | 66 | B.1.526 | 0.000282 |
S | 221 | S221L | tCg | tTg | 64 | 64 | B.1.320 | 0.079701 |
S | 221 | S221S | tcG | tcT | 60 | 60 | B.1.1.312 | 0.114723 |
S | 221 | S221S | tcG | tcT | 45 | 60 | B.1.258 | 0.002995 |
S | 221 | S221S | tcG | tcA | 15 | 60 | B.1.258 | 0.000998 |
S | 221 | S221L | tCg | tTg | 60 | 60 | Q.8 | 0.009894 |
S | 221 | S221S | tcG | tcT | 59 | 59 | AY.4.5 | 0.006342 |
S | 221 | S221S | tcG | tcT | 56 | 57 | AY.98 | 0.004424 |
S | 221 | S221S | tcG | tcA | 1 | 57 | AY.98 | 0.000079 |
S | 221 | S221L | tCg | tTg | 57 | 57 | B.1.1.214 | 0.003161 |
S | 221 | S221S | tcG | tcA | 49 | 56 | AY.76 | 0.236715 |
S | 221 | S221S | tcG | tcT | 7 | 56 | AY.76 | 0.033816 |
S | 221 | S221A | Tcg | Gcg | 56 | 56 | B.1.617.2 | 0.000211 |
S | 221 | S221A | Tcg | Gcg | 55 | 55 | B.1.1.7 | 0.000049 |
S | 221 | S221S | tcG | tcT | 52 | 52 | B.1.415.1 | 0.393939 |
S | 221 | S221S | tcG | tcT | 43 | 46 | B.1.429 | 0.001012 |
S | 221 | S221S | tcG | tcA | 3 | 46 | B.1.429 | 0.000071 |
S | 221 | S221S | tcG | tcA | 23 | 46 | B.1.596 | 0.002004 |
S | 221 | S221S | tcG | tcT | 22 | 46 | B.1.596 | 0.001917 |
S | 221 | S221S | tcG | tcC | 1 | 46 | B.1.596 | 0.000087 |
S | 221 | S221S | tcG | tcT | 36 | 42 | AY.20 | 0.001399 |
S | 221 | S221S | tcG | tcA | 4 | 42 | AY.20 | 0.000155 |
S | 221 | S221S | tcG | tcC | 2 | 42 | AY.20 | 0.000078 |
S | 221 | S221S | tcG | tcT | 33 | 41 | AY.33 | 0.002204 |
S | 221 | S221S | tcG | tcC | 6 | 41 | AY.33 | 0.000401 |
S | 221 | S221S | tcG | tcA | 2 | 41 | AY.33 | 0.000134 |
S | 221 | S221L | tCg | tTg | 40 | 40 | AY.8 | 0.024242 |
S | 221 | S221S | tcG | tcT | 34 | 40 | B.1.36 | 0.004961 |
S | 221 | S221S | tcG | tcA | 6 | 40 | B.1.36 | 0.000875 |
S | 221 | S221L | tCg | tTg | 39 | 39 | AY.102 | 0.001034 |
S | 221 | S221S | tcG | tcT | 38 | 39 | AY.16 | 0.014427 |
S | 221 | S221S | tcG | tcA | 1 | 39 | AY.16 | 0.00038 |
S | 221 | S221L | tCg | tTg | 39 | 39 | AY.46 | 0.004059 |
S | 221 | S221S | tcG | tcT | 38 | 39 | AY.99.2 | 0.003502 |
S | 221 | S221S | tcG | tcA | 1 | 39 | AY.99.2 | 0.000092 |
S | 221 | S221L | tCg | tTg | 38 | 38 | B.1.1 | 0.000689 |
S | 221 | S221S | tcG | tcT | 24 | 37 | AY.42 | 0.000966 |
S | 221 | S221S | tcG | tcA | 13 | 37 | AY.42 | 0.000523 |
S | 221 | S221S | tcG | tcA | 36 | 37 | B.1.36.36 | 0.021674 |
S | 221 | S221S | tcG | tcT | 1 | 37 | B.1.36.36 | 0.000602 |
S | 221 | S221L | tCg | tTg | 36 | 36 | AY.100 | 0.001656 |
S | 221 | S221S | tcG | tcT | 36 | 36 | R.1 | 0.00324 |
S | 221 | S221S | tcG | tcA | 28 | 35 | B.1.525 | 0.003168 |
S | 221 | S221S | tcG | tcT | 7 | 35 | B.1.525 | 0.000792 |
S | 221 | S221L | tCg | tTg | 34 | 34 | B.1.1.519 | 0.00135 |
S | 221 | S221L | tCg | tTg | 33 | 33 | AY.119 | 0.001165 |
S | 221 | S221A | Tcg | Gcg | 33 | 33 | AY.44 | 0.000201 |
S | 221 | S221L | tCg | tTg | 33 | 33 | AY.5 | 0.000681 |
S | 221 | S221L | tCg | tTg | 33 | 33 | B.1.258 | 0.002196 |
S | 221 | S221S | tcG | tcC | 20 | 31 | AY.23 | 0.001395 |
S | 221 | S221S | tcG | tcT | 8 | 31 | AY.23 | 0.000558 |
S | 221 | S221S | tcG | tcA | 3 | 31 | AY.23 | 0.000209 |
S | 221 | S221S | tcG | tcT | 18 | 31 | AY.4.2 | 0.00039 |
S | 221 | S221S | tcG | tcC | 9 | 31 | AY.4.2 | 0.000195 |
S | 221 | S221S | tcG | tcA | 4 | 31 | AY.4.2 | 0.000087 |
S | 221 | S221L | tCg | tTg | 31 | 31 | B.1.351 | 0.000922 |
S | 221 | S221L | tCg | tTg | 31 | 31 | B.1.525 | 0.003508 |
S | 221 | S221A | Tcg | Gcg | 31 | 31 | Q.2 | 0.019018 |
S | 221 | S221S | tcG | tcT | 30 | 30 | AY.118 | 0.001879 |
S | 221 | S221L | tCg | tTg | 30 | 30 | AY.42 | 0.001207 |
S | 221 | S221S | tcG | tcT | 20 | 30 | AY.9 | 0.001352 |
S | 221 | S221S | tcG | tcA | 10 | 30 | AY.9 | 0.000676 |
S | 221 | S221S | tcG | tcT | 22 | 30 | B.1.1.519 | 0.000874 |
S | 221 | S221S | tcG | tcA | 8 | 30 | B.1.1.519 | 0.000318 |
S | 221 | S221S | tcG | tcT | 27 | 29 | AY.120 | 0.001004 |
S | 221 | S221S | tcG | tcC | 1 | 29 | AY.120 | 0.000037 |
S | 221 | S221S | tcG | tcA | 1 | 29 | AY.120 | 0.000037 |
S | 221 | S221L | tCg | tTg | 29 | 29 | B.1.1.70 | 0.009891 |
S | 221 | S221S | tcG | tcT | 20 | 29 | B.1.351 | 0.000595 |
S | 221 | S221S | tcG | tcA | 9 | 29 | B.1.351 | 0.000268 |
S | 221 | S221del | TCG | --- | 28 | 28 | B.1.1.7 | 0.000025 |
S | 221 | S221L | tCg | tTg | 27 | 27 | AY.39 | 0.000667 |
S | 221 | S221L | tCg | tTg | 27 | 27 | AY.61 | 0.002829 |
S | 221 | S221W | tCg | tGg | 26 | 26 | All | 0.000005 |
S | 221 | S221S | tcG | tcT | 26 | 26 | B.1.1.372 | 0.017906 |
S | 221 | S221S | tcG | tcT | 21 | 26 | B.1.243 | 0.001461 |
S | 221 | S221S | tcG | tcA | 5 | 26 | B.1.243 | 0.000348 |
S | 221 | S221S | tcG | tcT | 19 | 25 | B.1.177.21 | 0.001453 |
S | 221 | S221S | tcG | tcA | 6 | 25 | B.1.177.21 | 0.000459 |
S | 221 | S221S | tcG | tcT | 24 | 25 | B.1.36.29 | 0.012416 |
S | 221 | S221S | tcG | tcA | 1 | 25 | B.1.36.29 | 0.000517 |
S | 221 | S221S | tcG | tcT | 23 | 24 | AY.13 | 0.003703 |
S | 221 | S221S | tcG | tcA | 1 | 24 | AY.13 | 0.000161 |
S | 221 | S221L | tCg | tTg | 24 | 24 | B.1.429 | 0.000565 |
S | 221 | S221S | tcG | tcT | 21 | 24 | C.37 | 0.002437 |
S | 221 | S221S | tcG | tcA | 3 | 24 | C.37 | 0.000348 |
S | 221 | S221S | tcG | tcT | 21 | 23 | B.1.221 | 0.001492 |
S | 221 | S221S | tcG | tcA | 2 | 23 | B.1.221 | 0.000142 |
S | 221 | S221S | tcG | tcT | 20 | 23 | B.1.621 | 0.00177 |
S | 221 | S221S | tcG | tcC | 3 | 23 | B.1.621 | 0.000266 |
S | 221 | S221P | Tcg | Ccg | 20 | 22 | All | 0.000004 |
S | 221 | S221P | TcG | CcC | 2 | 22 | All | 0 |
S | 221 | S221F | tCG | tTT | 18 | 21 | All | 0.000003 |
S | 221 | S221F | tCG | tTC | 3 | 21 | All | 0.000001 |
S | 221 | S221S | tcG | tcT | 16 | 21 | AY.29 | 0.000252 |
S | 221 | S221S | tcG | tcA | 5 | 21 | AY.29 | 0.000079 |
S | 221 | S221S | tcG | tcT | 14 | 21 | AY.98.1 | 0.000678 |
S | 221 | S221S | tcG | tcA | 6 | 21 | AY.98.1 | 0.000291 |
S | 221 | S221S | tcG | tcC | 1 | 21 | AY.98.1 | 0.000048 |
S | 221 | S221L | tCg | tTg | 21 | 21 | B.1.1.371 | 0.21875 |
S | 221 | S221L | tCg | tTg | 21 | 21 | C.36.3.1 | 0.057065 |
S | 221 | S221X | tCg | tAg | 18 | 20 | All | 0.000003 |
S | 221 | S221X | tCG | tAA | 2 | 20 | All | 0 |
S | 221 | S221L | tCg | tTg | 19 | 19 | AY.39.1 | 0.000753 |
S | 221 | S221L | tCg | tTg | 19 | 19 | AY.4.2 | 0.000412 |
S | 221 | S221L | tCg | tTg | 19 | 19 | AY.54 | 0.001812 |
S | 221 | S221S | tcG | tcT | 19 | 19 | AY.82 | 0.02578 |
S | 221 | S221S | tcG | tcT | 19 | 19 | AY.9.2 | 0.000698 |
S | 221 | S221S | tcG | tcC | 12 | 19 | B.1.1.28 | 0.003735 |
S | 221 | S221S | tcG | tcT | 7 | 19 | B.1.1.28 | 0.002179 |
S | 221 | S221S | tcG | tcT | 15 | 18 | AY.100 | 0.00069 |
S | 221 | S221S | tcG | tcA | 3 | 18 | AY.100 | 0.000138 |
S | 221 | S221L | tCg | tTg | 18 | 18 | AY.99.2 | 0.001659 |
S | 221 | S221S | tcG | tcA | 11 | 18 | P.2 | 0.002053 |
S | 221 | S221S | tcG | tcT | 7 | 18 | P.2 | 0.001306 |
S | 221 | S221F | tCG | tTT | 16 | 17 | AY.4 | 0.000025 |
S | 221 | S221F | tCG | tTC | 1 | 17 | AY.4 | 0.000002 |
S | 221 | S221S | tcG | tcT | 16 | 17 | AY.54 | 0.001526 |
S | 221 | S221S | tcG | tcA | 1 | 17 | AY.54 | 0.000095 |
S | 221 | S221S | tcG | tcT | 14 | 17 | B.1.177.60 | 0.003058 |
S | 221 | S221S | tcG | tcA | 3 | 17 | B.1.177.60 | 0.000655 |
S | 221 | S221S | tcG | tcT | 17 | 17 | B.1.258.11 | 0.006738 |
S | 221 | S221L | tCg | tTg | 16 | 16 | AY.98 | 0.001264 |
S | 221 | S221L | tCg | tTg | 16 | 16 | B.1.628 | 0.005638 |
S | 221 | S221S | tcG | tcT | 16 | 16 | P.1.10 | 0.004312 |
S | 221 | S221del | TCG | --- | 15 | 15 | AY.43 | 0.000066 |
S | 221 | S221L | tCg | tTg | 15 | 15 | AY.6 | 0.000617 |
S | 221 | S221S | tcG | tcA | 13 | 15 | B.1.1.348 | 0.01035 |
S | 221 | S221S | tcG | tcT | 2 | 15 | B.1.1.348 | 0.001592 |
S | 221 | S221L | tCg | tTg | 15 | 15 | B.1.177 | 0.000198 |
S | 221 | S221S | tcG | tcT | 14 | 15 | P.1.14 | 0.000669 |
S | 221 | S221S | tcG | tcA | 1 | 15 | P.1.14 | 0.000048 |
S | 221 | S221T | Tcg | Acg | 11 | 14 | All | 0.000002 |
S | 221 | S221T | TcG | AcT | 3 | 14 | All | 0.000001 |
S | 221 | S221S | tcG | tcT | 12 | 14 | AY.39.1 | 0.000475 |
S | 221 | S221S | tcG | tcA | 2 | 14 | AY.39.1 | 0.000079 |
S | 221 | S221S | tcG | tcT | 14 | 14 | AY.75.1 | 0.002524 |
S | 221 | S221S | tcG | tcT | 14 | 14 | B.1.1.217 | 0.050909 |
S | 221 | S221S | tcG | tcT | 12 | 14 | B.1.1.33 | 0.005051 |
S | 221 | S221S | tcG | tcC | 2 | 14 | B.1.1.33 | 0.000842 |
S | 221 | S221S | tcG | tcT | 14 | 14 | B.1.1.63 | 0.005401 |
S | 221 | S221S | tcG | tcT | 14 | 14 | B.1.177.17 | 0.011494 |
S | 221 | S221S | tcG | tcT | 14 | 14 | B.1.177.81 | 0.002651 |
S | 221 | S221S | tcG | tcA | 14 | 14 | B.1.258.17 | 0.001456 |
S | 221 | S221S | tcG | tcT | 14 | 14 | B.1.369 | 0.003993 |
S | 221 | S221S | tcG | tcT | 14 | 14 | B.1.469 | 0.050542 |
S | 221 | S221S | tcG | tcT | 14 | 14 | B.1.596.1 | 0.130841 |
S | 221 | S221L | tCg | tTg | 14 | 14 | Q.1 | 0.001769 |
S | 221 | S221S | tcG | tcT | 12 | 13 | AY.117 | 0.001014 |
S | 221 | S221S | tcG | tcA | 1 | 13 | AY.117 | 0.000085 |
S | 221 | S221L | tCg | tTg | 13 | 13 | AY.118 | 0.000814 |
S | 221 | S221L | tCg | tTg | 13 | 13 | AY.45 | 0.001582 |
S | 221 | S221S | tcG | tcT | 11 | 13 | AY.45 | 0.001339 |
S | 221 | S221S | tcG | tcA | 2 | 13 | AY.45 | 0.000243 |
S | 221 | S221S | tcG | tcT | 8 | 13 | AY.46 | 0.000833 |
S | 221 | S221S | tcG | tcC | 4 | 13 | AY.46 | 0.000416 |
S | 221 | S221S | tcG | tcA | 1 | 13 | AY.46 | 0.000104 |
S | 221 | S221L | tCg | tTg | 13 | 13 | B.1.177.21 | 0.000994 |
S | 221 | S221L | tCg | tTg | 12 | 12 | AY.113 | 0.001709 |
S | 221 | S221S | tcG | tcT | 11 | 12 | AY.121 | 0.001488 |
S | 221 | S221S | tcG | tcA | 1 | 12 | AY.121 | 0.000135 |
S | 221 | S221L | tCg | tTg | 12 | 12 | AY.26 | 0.00034 |
S | 221 | S221S | tcG | tcT | 7 | 12 | B.1.311 | 0.001922 |
S | 221 | S221S | tcG | tcA | 5 | 12 | B.1.311 | 0.001373 |
S | 221 | S221L | tCg | tTg | 11 | 11 | AY.1 | 0.004353 |
S | 221 | S221L | tCg | tTg | 11 | 11 | AY.23 | 0.000767 |
S | 221 | S221S | tcG | tcT | 10 | 11 | AY.34 | 0.00097 |
S | 221 | S221S | tcG | tcC | 1 | 11 | AY.34 | 0.000097 |
S | 221 | S221S | tcG | tcT | 9 | 11 | AY.59 | 0.004767 |
S | 221 | S221S | tcG | tcA | 2 | 11 | AY.59 | 0.001059 |
S | 221 | S221L | tCg | tTg | 11 | 11 | AY.98.1 | 0.000533 |
S | 221 | S221del | TCG | --- | 11 | 11 | B.1 | 0.000101 |
S | 221 | S221A | Tcg | Gcg | 11 | 11 | B.1.240 | 0.002371 |
S | 221 | S221S | tcG | tcT | 11 | 11 | B.1.351.2 | 0.003328 |
S | 221 | S221S | tcG | tcT | 11 | 11 | B.1.637 | 0.000804 |
S | 221 | S221L | tCg | tTg | 11 | 11 | C.37 | 0.001277 |
S | 221 | S221S | tcG | tcA | 11 | 11 | P.1.2 | 0.012717 |
S | 221 | S221L | tCg | tTg | 10 | 10 | AY.32 | 0.005325 |
S | 221 | S221A | Tcg | Gcg | 10 | 10 | AY.39 | 0.000247 |
S | 221 | S221S | tcG | tcT | 10 | 10 | AY.46.6 | 0.000722 |
S | 221 | S221S | tcG | tcT | 9 | 10 | B.1.1.222 | 0.001836 |
S | 221 | S221S | tcG | tcA | 1 | 10 | B.1.1.222 | 0.000204 |
S | 221 | S221S | tcG | tcT | 10 | 10 | B.1.177.75 | 0.010406 |
S | 221 | S221L | tCg | tTg | 10 | 10 | B.1.396 | 0.007057 |
S | 221 | S221S | tcG | tcT | 9 | 10 | B.1.617.1 | 0.001161 |
S | 221 | S221S | tcG | tcA | 1 | 10 | B.1.617.1 | 0.000129 |
S | 221 | S221S | tcG | tcT | 8 | 10 | Q.8 | 0.001319 |
S | 221 | S221S | tcG | tcA | 2 | 10 | Q.8 | 0.00033 |
S | 221 | S221del1 | tCg | t-g | 4 | 9 | All | 0.000001 |
S | 221 | S221del1 | tcG | tc- | 3 | 9 | All | 0.000001 |
S | 221 | S221del1 | TCG | -NN | 1 | 9 | All | 0 |
S | 221 | S221del1 | Tcg | -cg | 1 | 9 | All | 0 |
S | 221 | S221W | tCg | tGg | 9 | 9 | AY.4 | 0.000014 |
S | 221 | S221S | tcG | tcA | 5 | 9 | AY.4.2.1 | 0.000745 |
S | 221 | S221S | tcG | tcT | 4 | 9 | AY.4.2.1 | 0.000596 |
S | 221 | S221L | tCg | tTg | 9 | 9 | AY.46.4 | 0.001481 |
S | 221 | S221S | tcG | tcT | 7 | 9 | AY.9.1 | 0.000586 |
S | 221 | S221S | tcG | tcA | 2 | 9 | AY.9.1 | 0.000167 |
S | 221 | S221S | tcG | tcT | 9 | 9 | B.1.1.263 | 0.014019 |
S | 221 | S221S | tcG | tcT | 9 | 9 | B.1.1.306 | 0.003946 |
S | 221 | S221S | tcG | tcT | 9 | 9 | B.1.1.374 | 0.021378 |
S | 221 | S221S | tcG | tcT | 9 | 9 | B.1.160.14 | 0.019068 |
S | 221 | S221S | tcG | tcT | 8 | 9 | B.1.240 | 0.001725 |
S | 221 | S221S | tcG | tcC | 1 | 9 | B.1.240 | 0.000216 |
S | 221 | S221L | tCg | tTg | 9 | 9 | B.1.596 | 0.000784 |
S | 221 | S221S | tcG | tcT | 9 | 9 | C.36.1 | 0.037344 |
S | 221 | S221del | TCG | --- | 9 | 9 | P.1.15 | 0.002091 |
S | 221 | S221S | tcG | tcT | 8 | 8 | AY.120.1 | 0.002568 |
S | 221 | S221L | tCg | tTg | 8 | 8 | AY.33 | 0.000534 |
S | 221 | S221L | tCg | tTg | 8 | 8 | AY.36 | 0.001186 |
S | 221 | S221S | tcG | tcC | 8 | 8 | AY.62 | 0.003486 |
S | 221 | S221S | tcG | tcT | 7 | 8 | B | 0.000895 |
S | 221 | S221S | tcG | tcA | 1 | 8 | B | 0.000128 |
S | 221 | S221S | tcG | tcT | 8 | 8 | B.1.1.416 | 0.00724 |
S | 221 | S221L | tCg | tTg | 8 | 8 | B.1.1.8 | 0.028674 |
S | 221 | S221S | tcG | tcT | 8 | 8 | B.1.416.1 | 0.0125 |
S | 221 | S221S | tcG | tcT | 6 | 7 | AY.113 | 0.000854 |
S | 221 | S221S | tcG | tcA | 1 | 7 | AY.113 | 0.000142 |
S | 221 | S221L | tCg | tTg | 7 | 7 | AY.120 | 0.00026 |
S | 221 | S221L | tCg | tTg | 7 | 7 | AY.121 | 0.000947 |
S | 221 | S221S | tcG | tcT | 6 | 7 | AY.3.1 | 0.000512 |
S | 221 | S221S | tcG | tcA | 1 | 7 | AY.3.1 | 0.000085 |
S | 221 | S221S | tcG | tcT | 7 | 7 | AY.4.4 | 0.002864 |
S | 221 | S221L | tCg | tTg | 7 | 7 | AY.75 | 0.000392 |
S | 221 | S221S | tcG | tcT | 6 | 7 | B.1.1.37 | 0.001157 |
S | 221 | S221S | tcG | tcC | 1 | 7 | B.1.1.37 | 0.000193 |
S | 221 | S221S | tcG | tcT | 7 | 7 | B.1.1.485 | 0.116667 |
S | 221 | S221del | TCG | --- | 7 | 7 | B.1.177 | 0.000092 |
S | 221 | S221S | tcG | tcT | 7 | 7 | B.1.177.80 | 0.013384 |
S | 221 | S221S | tcG | tcT | 7 | 7 | B.1.362 | 0.010786 |
S | 221 | S221L | tCg | tTg | 7 | 7 | B.1.637 | 0.000512 |
S | 221 | S221S | tcG | tcT | 7 | 7 | C.36.3 | 0.003971 |
S | 221 | S221del | TCG | --- | 7 | 7 | C.37 | 0.000812 |
S | 221 | S221A | Tcg | Gcg | 6 | 6 | AY.103 | 0.000037 |
S | 221 | S221L | tCg | tTg | 6 | 6 | AY.111 | 0.001099 |
S | 221 | S221L | tCg | tTg | 6 | 6 | AY.117 | 0.000507 |
S | 221 | S221S | tcG | tcT | 4 | 6 | AY.14 | 0.000352 |
S | 221 | S221S | tcG | tcA | 1 | 6 | AY.14 | 0.000088 |
S | 221 | S221S | tcG | tcC | 1 | 6 | AY.14 | 0.000088 |
S | 221 | S221del | TCG | --- | 6 | 6 | AY.25 | 0.000036 |
S | 221 | S221S | tcG | tcT | 6 | 6 | AY.27 | 0.000388 |
S | 221 | S221L | tCg | tTg | 6 | 6 | AY.3.1 | 0.000512 |
S | 221 | S221L | tCg | tTg | 6 | 6 | AY.34 | 0.000582 |
S | 221 | S221S | tcG | tcT | 6 | 6 | AY.36 | 0.000889 |
S | 221 | S221A | Tcg | Gcg | 6 | 6 | AY.42 | 0.000241 |
S | 221 | S221L | tCg | tTg | 6 | 6 | AY.69 | 0.00112 |
S | 221 | S221S | tcG | tcT | 3 | 6 | AY.75 | 0.000168 |
S | 221 | S221S | tcG | tcC | 3 | 6 | AY.75 | 0.000168 |
S | 221 | S221A | Tcg | Gcg | 6 | 6 | AY.91 | 0.004383 |
S | 221 | S221S | tcG | tcT | 6 | 6 | B.1.232 | 0.003224 |
S | 221 | S221S | tcG | tcT | 6 | 6 | B.1.324 | 0.009631 |
S | 221 | S221S | tcG | tcT | 6 | 6 | B.1.351.3 | 0.005259 |
S | 221 | S221del | TCG | --- | 6 | 6 | B.1.617.2 | 0.000023 |
S | 221 | S221L | tCg | tTg | 6 | 6 | B.1.621 | 0.000531 |
S | 221 | S221S | tcG | tcA | 6 | 6 | C.26 | 0.044118 |
S | 221 | S221A | Tcg | Gcg | 5 | 5 | AY.100 | 0.00023 |
S | 221 | S221L | tCg | tTg | 5 | 5 | AY.108 | 0.005513 |
S | 221 | S221S | tcG | tcT | 5 | 5 | AY.12 | 0.00158 |
S | 221 | S221A | Tcg | Gcg | 5 | 5 | AY.4 | 0.000008 |
S | 221 | S221S | tcG | tcT | 4 | 5 | AY.46.4 | 0.000658 |
S | 221 | S221S | tcG | tcA | 1 | 5 | AY.46.4 | 0.000165 |
S | 221 | S221L | tCg | tTg | 5 | 5 | AY.47 | 0.000156 |
S | 221 | S221L | tCg | tTg | 5 | 5 | AY.5.3 | 0.001687 |
S | 221 | S221L | tCg | tTg | 5 | 5 | AY.5.4 | 0.001384 |
S | 221 | S221L | tCg | tTg | 5 | 5 | AY.58 | 0.004537 |
S | 221 | S221L | tCg | tTg | 5 | 5 | AY.67 | 0.002321 |
S | 221 | S221S | tcG | tcT | 3 | 5 | AY.69 | 0.00056 |
S | 221 | S221S | tcG | tcA | 2 | 5 | AY.69 | 0.000373 |
S | 221 | S221L | tCg | tTg | 5 | 5 | AY.79 | 0.006053 |
S | 221 | S221S | tcG | tcT | 5 | 5 | B.1.1.241 | 0.010352 |
S | 221 | S221S | tcG | tcT | 5 | 5 | B.1.1.318 | 0.001509 |
S | 221 | S221L | tCg | tTg | 5 | 5 | B.1.1.39 | 0.002548 |
S | 221 | S221S | tcG | tcT | 5 | 5 | B.1.1.47 | 0.026738 |
S | 221 | S221P | Tcg | Ccg | 5 | 5 | B.1.1.7 | 0.000004 |
S | 221 | S221S | tcG | tcT | 5 | 5 | B.1.111 | 0.005875 |
S | 221 | S221L | tCg | tTg | 5 | 5 | B.1.243 | 0.000348 |
S | 221 | S221L | tCg | tTg | 5 | 5 | B.1.258.11 | 0.001982 |
S | 221 | S221S | tcG | tcA | 5 | 5 | B.1.258.3 | 0.008375 |
S | 221 | S221L | tCg | tTg | 5 | 5 | B.1.351.5 | 0.002998 |
S | 221 | S221L | tCg | tTg | 5 | 5 | P.1 | 0.000079 |
S | 221 | S221del | TCG | --- | 5 | 5 | P.1 | 0.000079 |
S | 221 | S221L | tCg | tTg | 5 | 5 | P.1.14 | 0.000239 |
S | 221 | S221S | tcG | tcT | 4 | 5 | P.1.15 | 0.000929 |
S | 221 | S221S | tcG | tcA | 1 | 5 | P.1.15 | 0.000232 |
S | 221 | S221S | tcG | tcT | 4 | 5 | P.7 | 0.017467 |
S | 221 | S221S | tcG | tcA | 1 | 5 | P.7 | 0.004367 |
S | 221 | S221L | tCg | tTg | 4 | 4 | AY.101 | 0.001962 |
S | 221 | S221A | Tcg | Gcg | 4 | 4 | AY.117 | 0.000338 |
S | 221 | S221S | tcG | tcT | 4 | 4 | AY.19 | 0.004561 |
S | 221 | S221S | tcG | tcT | 4 | 4 | AY.2 | 0.001425 |
S | 221 | S221L | tCg | tTg | 4 | 4 | AY.30 | 0.001583 |
S | 221 | S221del | TCG | --- | 4 | 4 | AY.4 | 0.000006 |
S | 221 | S221L | tCg | tTg | 4 | 4 | AY.46.5 | 0.000794 |
S | 221 | S221S | tcG | tcT | 4 | 4 | AY.5.3 | 0.00135 |
S | 221 | S221S | tcG | tcT | 4 | 4 | AY.74 | 0.000463 |
S | 221 | S221S | tcG | tcT | 4 | 4 | AY.84 | 0.00175 |
S | 221 | S221L | tCg | tTg | 4 | 4 | AY.9.2 | 0.000147 |
S | 221 | S221S | tcG | tcT | 4 | 4 | B.1.1.170 | 0.004988 |
S | 221 | S221S | tcG | tcT | 4 | 4 | B.1.1.216 | 0.003562 |
S | 221 | S221S | tcG | tcT | 4 | 4 | B.1.1.231 | 0.012384 |
S | 221 | S221S | tcG | tcT | 4 | 4 | B.1.1.266 | 0.04878 |
S | 221 | S221L | tCg | tTg | 4 | 4 | B.1.1.311 | 0.001433 |
S | 221 | S221L | tCg | tTg | 4 | 4 | B.1.1.448 | 0.00813 |
S | 221 | S221L | tCg | tTg | 4 | 4 | B.1.160 | 0.000125 |
S | 221 | S221S | tcG | tcT | 2 | 4 | B.1.177.54 | 0.001213 |
S | 221 | S221S | tcG | tcC | 2 | 4 | B.1.177.54 | 0.001213 |
S | 221 | S221S | tcG | tcT | 4 | 4 | B.1.203 | 0.25 |
S | 221 | S221L | tCg | tTg | 4 | 4 | B.1.221 | 0.000284 |
S | 221 | S221S | tcG | tcA | 4 | 4 | B.1.221.2 | 0.016064 |
S | 221 | S221S | tcG | tcT | 4 | 4 | B.1.234 | 0.000528 |
S | 221 | S221L | tCg | tTg | 4 | 4 | B.1.36 | 0.000584 |
S | 221 | S221S | tcG | tcT | 4 | 4 | B.1.36.19 | 0.037037 |
S | 221 | S221S | tcG | tcT | 4 | 4 | B.1.398 | 0.011905 |
S | 221 | S221S | tcG | tcT | 4 | 4 | B.1.406 | 0.024242 |
S | 221 | S221A | Tcg | Gcg | 4 | 4 | B.1.429 | 0.000094 |
S | 221 | S221S | tcG | tcC | 3 | 4 | B.1.517 | 0.001281 |
S | 221 | S221S | tcG | tcA | 1 | 4 | B.1.517 | 0.000427 |
S | 221 | S221S | tcG | tcT | 4 | 4 | B.1.565 | 0.003241 |
S | 221 | S221S | tcG | tcT | 4 | 4 | B.1.575 | 0.001214 |
S | 221 | S221L | tCg | tTg | 4 | 4 | B.1.617.1 | 0.000516 |
S | 221 | S221S | tcG | tcT | 4 | 4 | C.1 | 0.009569 |
S | 221 | S221S | tcG | tcA | 4 | 4 | Q.3 | 0.00058 |
S | 221 | S221L | tCg | tTg | 3 | 3 | A.2.5 | 0.001497 |
S | 221 | S221S | tcG | tcT | 2 | 3 | A.23.1 | 0.001408 |
S | 221 | S221S | tcG | tcA | 1 | 3 | A.23.1 | 0.000704 |
S | 221 | S221L | tCg | tTg | 3 | 3 | A.28 | 0.007937 |
S | 221 | S221S | tcG | tcT | 3 | 3 | AD.2 | 0.000657 |
S | 221 | S221L | tCg | tTg | 3 | 3 | AE.1 | 0.034091 |
S | 221 | S221S | tcG | tcT | 3 | 3 | AY.1 | 0.001187 |
S | 221 | S221del | TCG | --- | 3 | 3 | AY.100 | 0.000138 |
S | 221 | S221L | tCg | tTg | 3 | 3 | AY.106 | 0.001005 |
S | 221 | S221S | tcG | tcT | 2 | 3 | AY.106 | 0.00067 |
S | 221 | S221S | tcG | tcA | 1 | 3 | AY.106 | 0.000335 |
S | 221 | S221L | tCg | tTg | 3 | 3 | AY.109 | 0.002219 |
S | 221 | S221L | tCg | tTg | 3 | 3 | AY.116.1 | 0.000934 |
S | 221 | S221L | tCg | tTg | 3 | 3 | AY.14 | 0.000264 |
S | 221 | S221S | tcG | tcT | 3 | 3 | AY.23.1 | 0.001252 |
S | 221 | S221S | tcG | tcA | 3 | 3 | AY.28 | 0.005671 |
S | 221 | S221S | tcG | tcT | 3 | 3 | AY.38 | 0.001498 |
S | 221 | S221P | Tcg | Ccg | 3 | 3 | AY.4 | 0.000005 |
S | 221 | S221S | tcG | tcT | 3 | 3 | AY.4.3 | 0.002525 |
S | 221 | S221del | TCG | --- | 3 | 3 | AY.4.5 | 0.000322 |
S | 221 | S221S | tcG | tcT | 3 | 3 | AY.48 | 0.001395 |
S | 221 | S221S | tcG | tcT | 3 | 3 | AY.53 | 0.000863 |
S | 221 | S221S | tcG | tcT | 3 | 3 | AY.55 | 0.002752 |
S | 221 | S221S | tcG | tcT | 3 | 3 | AY.67 | 0.001393 |
S | 221 | S221S | tcG | tcT | 3 | 3 | AY.68 | 0.000821 |
S | 221 | S221S | tcG | tcT | 3 | 3 | AY.70 | 0.000626 |
S | 221 | S221S | tcG | tcT | 3 | 3 | AY.71 | 0.001425 |
S | 221 | S221S | tcG | tcT | 3 | 3 | AY.73 | 0.001996 |
S | 221 | S221L | tCg | tTg | 3 | 3 | AY.78 | 0.004622 |
S | 221 | S221L | tCg | tTg | 3 | 3 | AY.84 | 0.001312 |
S | 221 | S221A | Tcg | Gcg | 3 | 3 | AY.85 | 0.001282 |
S | 221 | S221S | tcG | tcT | 2 | 3 | AY.85 | 0.000854 |
S | 221 | S221S | tcG | tcC | 1 | 3 | AY.85 | 0.000427 |
S | 221 | S221L | tCg | tTg | 3 | 3 | AY.87 | 0.002498 |
S | 221 | S221L | tCg | tTg | 3 | 3 | AY.91 | 0.002191 |
S | 221 | S221S | tcG | tcA | 3 | 3 | AY.91.1 | 0.012195 |
S | 221 | S221S | tcG | tcT | 3 | 3 | AY.92 | 0.000862 |
S | 221 | S221L | tCg | tTg | 3 | 3 | AY.99 | 0.003148 |
S | 221 | S221W | tCg | tGg | 3 | 3 | B.1 | 0.000027 |
S | 221 | S221S | tcG | tcT | 3 | 3 | B.1.1.1 | 0.00098 |
S | 221 | S221L | tCg | tTg | 3 | 3 | B.1.1.10 | 0.003344 |
S | 221 | S221S | tcG | tcT | 3 | 3 | B.1.1.214 | 0.000166 |
S | 221 | S221S | tcG | tcT | 3 | 3 | B.1.1.322 | 0.026316 |
S | 221 | S221L | tCg | tTg | 3 | 3 | B.1.1.348 | 0.002389 |
S | 221 | S221S | tcG | tcT | 3 | 3 | B.1.1.397 | 0.006757 |
S | 221 | S221T | Tcg | Acg | 3 | 3 | B.1.1.7 | 0.000003 |
S | 221 | S221X | tCg | tAg | 3 | 3 | B.1.1.7 | 0.000003 |
S | 221 | S221L | tCg | tTg | 3 | 3 | B.1.1.71 | 0.018182 |
S | 221 | S221S | tcG | tcT | 3 | 3 | B.1.177.10 | 0.002634 |
S | 221 | S221S | tcG | tcA | 3 | 3 | B.1.177.7 | 0.000495 |
S | 221 | S221L | tCg | tTg | 3 | 3 | B.1.177.77 | 0.002179 |
S | 221 | S221S | tcG | tcT | 3 | 3 | B.1.177.86 | 0.00055 |
S | 221 | S221S | tcG | tcT | 3 | 3 | B.1.214.3 | 0.021429 |
S | 221 | S221S | tcG | tcA | 3 | 3 | B.1.233 | 0.042254 |
S | 221 | S221S | tcG | tcT | 3 | 3 | B.1.239 | 0.003663 |
S | 221 | S221L | tCg | tTg | 3 | 3 | B.1.258.4 | 0.010345 |
S | 221 | S221L | tCg | tTg | 3 | 3 | B.1.324 | 0.004815 |
S | 221 | S221L | tCg | tTg | 3 | 3 | B.1.336 | 0.007317 |
S | 221 | S221del | TCG | --- | 3 | 3 | B.1.351 | 0.000089 |
S | 221 | S221L | tCg | tTg | 3 | 3 | B.1.351.2 | 0.000908 |
S | 221 | S221S | tcG | tcT | 3 | 3 | B.1.351.5 | 0.001799 |
S | 221 | S221L | tCg | tTg | 3 | 3 | B.1.36.29 | 0.001552 |
S | 221 | S221S | tcG | tcT | 3 | 3 | B.1.396 | 0.002117 |
S | 221 | S221S | tcG | tcT | 2 | 3 | B.1.459 | 0.008163 |
S | 221 | S221S | tcG | tcC | 1 | 3 | B.1.459 | 0.004082 |
S | 221 | S221S | tcG | tcT | 3 | 3 | B.1.466.2 | 0.001174 |
S | 221 | S221L | tCg | tTg | 3 | 3 | B.1.566 | 0.057692 |
S | 221 | S221S | tcG | tcT | 3 | 3 | B.1.577 | 0.002062 |
S | 221 | S221S | tcG | tcT | 3 | 3 | B.1.588 | 0.00273 |
S | 221 | S221S | tcG | tcT | 3 | 3 | B.1.631 | 0.010101 |
S | 221 | S221S | tcG | tcT | 3 | 3 | B.31 | 0.011194 |
S | 221 | S221L | tCg | tTg | 3 | 3 | C.16 | 0.003181 |
S | 221 | S221S | tcG | tcT | 3 | 3 | C.36 | 0.002732 |
S | 221 | S221P | Tcg | Ccg | 3 | 3 | D.2 | 0.000225 |
S | 221 | S221T | Tcg | Acg | 2 | 3 | P.1 | 0.000032 |
S | 221 | S221T | TcG | AcT | 1 | 3 | P.1 | 0.000016 |
S | 221 | S221S | tcG | tcT | 3 | 3 | P.1.1 | 0.000953 |
S | 221 | S221S | tcG | tcT | 3 | 3 | P.1.12 | 0.001452 |
S | 221 | S221S | tcG | tcT | 2 | 3 | P.1.17 | 0.000324 |
S | 221 | S221S | tcG | tcA | 1 | 3 | P.1.17 | 0.000162 |
S | 221 | S221del | TCG | --- | 2 | 2 | 0.111111 | |
S | 221 | S221X | tCG | tAA | 2 | 2 | 0.111111 | |
S | 221 | S221S | tcG | tcT | 2 | 2 | A | 0.000774 |
S | 221 | S221S | tcG | tcT | 2 | 2 | A.1 | 0.000564 |
S | 221 | S221S | tcG | tcT | 2 | 2 | A.2 | 0.001324 |
S | 221 | S221S | tcG | tcT | 2 | 2 | A.2.5 | 0.000998 |
S | 221 | S221S | tcG | tcA | 2 | 2 | A.28 | 0.005291 |
S | 221 | S221K | TCg | AAg | 2 | 2 | All | 0 |
S | 221 | S221H | TCG | CAC | 2 | 2 | All | 0 |
S | 221 | S221Y | tCG | tAC | 2 | 2 | All | 0 |
S | 221 | S221M | TCg | ATg | 2 | 2 | All | 0 |
S | 221 | S221Q | TCg | CAg | 2 | 2 | All | 0 |
S | 221 | S221L | tCg | tTg | 2 | 2 | AY.105 | 0.001286 |
S | 221 | S221L | tCg | tTg | 2 | 2 | AY.114 | 0.000462 |
S | 221 | S221L | tCg | tTg | 2 | 2 | AY.116 | 0.000574 |
S | 221 | S221del | TCG | --- | 2 | 2 | AY.120 | 0.000074 |
S | 221 | S221A | Tcg | Gcg | 2 | 2 | AY.20 | 0.000078 |
S | 221 | S221del1 | TCG | -NN | 1 | 2 | AY.20 | 0.000039 |
S | 221 | S221del1 | tCg | t-g | 1 | 2 | AY.20 | 0.000039 |
S | 221 | S221F | tCG | tTT | 2 | 2 | AY.25 | 0.000012 |
S | 221 | S221L | tCg | tTg | 2 | 2 | AY.27 | 0.000129 |
S | 221 | S221S | tcG | tcA | 1 | 2 | AY.29.1 | 0.000221 |
S | 221 | S221S | tcG | tcT | 1 | 2 | AY.29.1 | 0.000221 |
S | 221 | S221L | tCg | tTg | 2 | 2 | AY.4.4 | 0.000818 |
S | 221 | S221S | tcG | tcT | 2 | 2 | AY.40 | 0.001929 |
S | 221 | S221X | tCg | tAg | 2 | 2 | AY.43 | 0.000009 |
S | 221 | S221A | Tcg | Gcg | 2 | 2 | AY.43 | 0.000009 |
S | 221 | S221del | TCG | --- | 2 | 2 | AY.44 | 0.000012 |
S | 221 | S221A | Tcg | Gcg | 2 | 2 | AY.46 | 0.000208 |
S | 221 | S221L | tCg | tTg | 2 | 2 | AY.46.3 | 0.001867 |
S | 221 | S221A | Tcg | Gcg | 2 | 2 | AY.5 | 0.000041 |
S | 221 | S221A | Tcg | Gcg | 2 | 2 | AY.59 | 0.001059 |
S | 221 | S221del | TCG | --- | 2 | 2 | AY.65 | 0.001066 |
S | 221 | S221S | tcG | tcT | 1 | 2 | AY.7 | 0.000196 |
S | 221 | S221S | tcG | tcA | 1 | 2 | AY.7 | 0.000196 |
S | 221 | S221S | tcG | tcT | 2 | 2 | AY.7.1 | 0.000225 |
S | 221 | S221L | tCg | tTg | 2 | 2 | AY.7.1 | 0.000225 |
S | 221 | S221L | tCg | tTg | 2 | 2 | AY.70 | 0.000417 |
S | 221 | S221L | tCg | tTg | 2 | 2 | AY.74 | 0.000231 |
S | 221 | S221L | tCg | tTg | 2 | 2 | AY.75.1 | 0.000361 |
S | 221 | S221S | tcG | tcT | 2 | 2 | AY.79 | 0.002421 |
S | 221 | S221S | tcG | tcT | 1 | 2 | AY.88 | 0.000884 |
S | 221 | S221S | tcG | tcA | 1 | 2 | AY.88 | 0.000884 |
S | 221 | S221A | Tcg | Gcg | 2 | 2 | AY.92 | 0.000575 |
S | 221 | S221S | tcG | tcA | 2 | 2 | AY.94 | 0.000885 |
S | 221 | S221del | TCG | --- | 2 | 2 | AY.95 | 0.001522 |
S | 221 | S221S | tcG | tcT | 2 | 2 | AY.95 | 0.001522 |
S | 221 | S221L | tCg | tTg | 2 | 2 | AY.96 | 0.004149 |
S | 221 | S221A | Tcg | Gcg | 2 | 2 | AY.99 | 0.002099 |
S | 221 | S221L | tCg | tTg | 2 | 2 | B | 0.000256 |
S | 221 | S221del | TCG | --- | 2 | 2 | B.1.1 | 0.000036 |
S | 221 | S221S | tcG | tcT | 2 | 2 | B.1.1.129 | 0.018349 |
S | 221 | S221S | tcG | tcT | 2 | 2 | B.1.1.138 | 0.012121 |
S | 221 | S221S | tcG | tcT | 2 | 2 | B.1.1.207 | 0.002364 |
S | 221 | S221S | tcG | tcT | 1 | 2 | B.1.1.220 | 0.001859 |
S | 221 | S221S | tcG | tcC | 1 | 2 | B.1.1.220 | 0.001859 |
S | 221 | S221S | tcG | tcT | 2 | 2 | B.1.1.240 | 0.00939 |
S | 221 | S221S | tcG | tcT | 2 | 2 | B.1.1.284 | 0.000215 |
S | 221 | S221S | tcG | tcT | 2 | 2 | B.1.1.289 | 0.004167 |
S | 221 | S221L | tCg | tTg | 2 | 2 | B.1.1.291 | 0.001485 |
S | 221 | S221S | tcG | tcC | 2 | 2 | B.1.1.291 | 0.001485 |
S | 221 | S221S | tcG | tcT | 2 | 2 | B.1.1.301 | 0.002358 |
S | 221 | S221S | tcG | tcT | 2 | 2 | B.1.1.305 | 0.007722 |
S | 221 | S221L | tCg | tTg | 2 | 2 | B.1.1.318 | 0.000604 |
S | 221 | S221S | tcG | tcT | 2 | 2 | B.1.1.319 | 0.035088 |
S | 221 | S221L | tCg | tTg | 2 | 2 | B.1.1.326 | 0.003521 |
S | 221 | S221S | tcG | tcT | 2 | 2 | B.1.1.326 | 0.003521 |
S | 221 | S221L | tCg | tTg | 2 | 2 | B.1.1.33 | 0.000842 |
S | 221 | S221L | tCg | tTg | 2 | 2 | B.1.1.368 | 0.006173 |
S | 221 | S221S | tcG | tcT | 1 | 2 | B.1.1.398 | 0.003226 |
S | 221 | S221S | tcG | tcA | 1 | 2 | B.1.1.398 | 0.003226 |
S | 221 | S221S | tcG | tcC | 2 | 2 | B.1.1.50 | 0.001358 |
S | 221 | S221W | tCg | tGg | 2 | 2 | B.1.1.7 | 0.000002 |
S | 221 | S221S | tcG | tcT | 2 | 2 | B.1.1.93 | 0.051282 |
S | 221 | S221L | tCg | tTg | 2 | 2 | B.1.128 | 0.001271 |
S | 221 | S221L | tCg | tTg | 2 | 2 | B.1.160.7 | 0.004158 |
S | 221 | S221S | tcG | tcT | 2 | 2 | B.1.177.9 | 0.002663 |
S | 221 | S221S | tcG | tcT | 2 | 2 | B.1.206 | 0.001631 |
S | 221 | S221L | tCg | tTg | 2 | 2 | B.1.240 | 0.000431 |
S | 221 | S221S | tcG | tcT | 2 | 2 | B.1.241 | 0.001623 |
S | 221 | S221del | TCG | --- | 2 | 2 | B.1.258 | 0.000133 |
S | 221 | S221L | tCg | tTg | 2 | 2 | B.1.258.17 | 0.000208 |
S | 221 | S221S | tcG | tcT | 2 | 2 | B.1.332 | 0.006993 |
S | 221 | S221S | tcG | tcT | 2 | 2 | B.1.342 | 0.2 |
S | 221 | S221L | tCg | tTg | 2 | 2 | B.1.351.3 | 0.001753 |
S | 221 | S221S | tcG | tcT | 2 | 2 | B.1.36.1 | 0.002281 |
S | 221 | S221L | tCg | tTg | 2 | 2 | B.1.36.1 | 0.002281 |
S | 221 | S221S | tcG | tcT | 2 | 2 | B.1.36.17 | 0.000988 |
S | 221 | S221L | tCg | tTg | 2 | 2 | B.1.36.35 | 0.005208 |
S | 221 | S221S | tcG | tcT | 2 | 2 | B.1.375 | 0.001639 |
S | 221 | S221L | tCg | tTg | 2 | 2 | B.1.398 | 0.005952 |
S | 221 | S221S | tcG | tcA | 1 | 2 | B.1.400 | 0.000429 |
S | 221 | S221S | tcG | tcT | 1 | 2 | B.1.400 | 0.000429 |
S | 221 | S221S | tcG | tcA | 2 | 2 | B.1.404 | 0.002604 |
S | 221 | S221L | tCg | tTg | 2 | 2 | B.1.427 | 0.000101 |
S | 221 | S221S | tcG | tcT | 2 | 2 | B.1.493 | 0.051282 |
S | 221 | S221del | TCG | --- | 2 | 2 | B.1.525 | 0.000226 |
S | 221 | S221X | tCg | tAg | 2 | 2 | B.1.596 | 0.000174 |
S | 221 | S221del1 | tCg | t-g | 1 | 2 | B.1.617.2 | 0.000004 |
S | 221 | S221del1 | Tcg | -cg | 1 | 2 | B.1.617.2 | 0.000004 |
S | 221 | S221L | tCg | tTg | 2 | 2 | B.1.619 | 0.001742 |
S | 221 | S221del | TCG | --- | 2 | 2 | B.1.621 | 0.000177 |
S | 221 | S221P | TcG | CcC | 1 | 2 | B.1.91 | 0.002075 |
S | 221 | S221P | Tcg | Ccg | 1 | 2 | B.1.91 | 0.002075 |
S | 221 | S221S | tcG | tcC | 1 | 2 | B.1.91 | 0.002075 |
S | 221 | S221S | tcG | tcT | 1 | 2 | B.1.91 | 0.002075 |
S | 221 | S221L | tCg | tTg | 2 | 2 | B.40 | 0.000729 |
S | 221 | S221S | tcG | tcT | 2 | 2 | B.40 | 0.000729 |
S | 221 | S221S | tcG | tcT | 2 | 2 | B.6.6 | 0.001778 |
S | 221 | S221L | tCg | tTg | 2 | 2 | C.23 | 0.011628 |
S | 221 | S221L | tCg | tTg | 2 | 2 | C.35 | 0.001548 |
S | 221 | S221L | tCg | tTg | 2 | 2 | D.2 | 0.00015 |
S | 221 | S221P | TcG | CcC | 1 | 2 | P.1 | 0.000016 |
S | 221 | S221P | Tcg | Ccg | 1 | 2 | P.1 | 0.000016 |
S | 221 | S221del | TCG | --- | 2 | 2 | P.1.1 | 0.000635 |
S | 221 | S221S | tcG | tcT | 1 | 2 | Q.1 | 0.000126 |
S | 221 | S221S | tcG | tcA | 1 | 2 | Q.1 | 0.000126 |
S | 221 | S221X | tCg | tAg | 1 | 1 | A | 0.000387 |
S | 221 | S221L | tCg | tTg | 1 | 1 | A.18 | 0.05 |
S | 221 | S221L | tCg | tTg | 1 | 1 | A.2.2 | 0.001689 |
S | 221 | S221S | tcG | tcT | 1 | 1 | A.2.4 | 0.003367 |
S | 221 | S221L | tCg | tTg | 1 | 1 | A.2.4 | 0.003367 |
S | 221 | S221del | TCG | --- | 1 | 1 | A.2.5 | 0.000499 |
S | 221 | S221S | tcG | tcA | 1 | 1 | A.21 | 0.00277 |
S | 221 | S221L | tCg | tTg | 1 | 1 | AD.2 | 0.000219 |
S | 221 | S221I | TCG | ATC | 1 | 1 | All | 0 |
S | 221 | S221del2 | TCg | --g | 1 | 1 | All | 0 |
S | 221 | S221S | tcG | tcA | 1 | 1 | AY.10 | 0.00053 |
S | 221 | S221del | TCG | --- | 1 | 1 | AY.101 | 0.00049 |
S | 221 | S221S | tcG | tcT | 1 | 1 | AY.101 | 0.00049 |
S | 221 | S221del1 | tcG | tc- | 1 | 1 | AY.101 | 0.00049 |
S | 221 | S221P | Tcg | Ccg | 1 | 1 | AY.102 | 0.000027 |
S | 221 | S221L | tCg | tTg | 1 | 1 | AY.104 | 0.001984 |
S | 221 | S221S | tcG | tcT | 1 | 1 | AY.109 | 0.00074 |
S | 221 | S221L | tCg | tTg | 1 | 1 | AY.110 | 0.000113 |
S | 221 | S221S | tcG | tcT | 1 | 1 | AY.111 | 0.000183 |
S | 221 | S221S | tcG | tcT | 1 | 1 | AY.115 | 0.005208 |
S | 221 | S221S | tcG | tcT | 1 | 1 | AY.116 | 0.000287 |
S | 221 | S221del | TCG | --- | 1 | 1 | AY.118 | 0.000063 |
S | 221 | S221del1 | tcG | tc- | 1 | 1 | AY.119 | 0.000035 |
S | 221 | S221T | Tcg | Acg | 1 | 1 | AY.119 | 0.000035 |
S | 221 | S221A | Tcg | Gcg | 1 | 1 | AY.119 | 0.000035 |
S | 221 | S221L | tCg | tTg | 1 | 1 | AY.120.2.1 | 0.000498 |
S | 221 | S221S | tcG | tcT | 1 | 1 | AY.120.2.1 | 0.000498 |
S | 221 | S221L | tCg | tTg | 1 | 1 | AY.13 | 0.000161 |
S | 221 | S221L | tCg | tTg | 1 | 1 | AY.16 | 0.00038 |
S | 221 | S221L | tCg | tTg | 1 | 1 | AY.16.1 | 0.00047 |
S | 221 | S221S | tcG | tcT | 1 | 1 | AY.16.1 | 0.00047 |
S | 221 | S221L | tCg | tTg | 1 | 1 | AY.19 | 0.00114 |
S | 221 | S221A | Tcg | Gcg | 1 | 1 | AY.21 | 0.001898 |
S | 221 | S221del2 | TCg | --g | 1 | 1 | AY.23 | 0.00007 |
S | 221 | S221A | Tcg | Gcg | 1 | 1 | AY.23 | 0.00007 |
S | 221 | S221del | TCG | --- | 1 | 1 | AY.24 | 0.000431 |
S | 221 | S221S | tcG | tcT | 1 | 1 | AY.24 | 0.000431 |
S | 221 | S221W | tCg | tGg | 1 | 1 | AY.25 | 0.000006 |
S | 221 | S221M | TCg | ATg | 1 | 1 | AY.26 | 0.000028 |
S | 221 | S221L | tCg | tTg | 1 | 1 | AY.29.1 | 0.000221 |
S | 221 | S221del | TCG | --- | 1 | 1 | AY.3 | 0.00001 |
S | 221 | S221T | Tcg | Acg | 1 | 1 | AY.3 | 0.00001 |
S | 221 | S221del | TCG | --- | 1 | 1 | AY.30 | 0.000396 |
S | 221 | S221S | tcG | tcT | 1 | 1 | AY.31 | 0.018519 |
S | 221 | S221S | tcG | tcT | 1 | 1 | AY.32 | 0.000532 |
S | 221 | S221S | tcG | tcT | 1 | 1 | AY.34.1 | 0.00051 |
S | 221 | S221S | tcG | tcT | 1 | 1 | AY.35 | 0.000233 |
S | 221 | S221L | tCg | tTg | 1 | 1 | AY.35 | 0.000233 |
S | 221 | S221L | tCg | tTg | 1 | 1 | AY.37 | 0.000316 |
S | 221 | S221T | Tcg | Acg | 1 | 1 | AY.4 | 0.000002 |
S | 221 | S221S | tcG | tcA | 1 | 1 | AY.4.1 | 0.000737 |
S | 221 | S221L | tCg | tTg | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 221 | S221L | tCg | tTg | 1 | 1 | AY.4.5 | 0.000107 |
S | 221 | S221X | tCg | tAg | 1 | 1 | AY.42 | 0.00004 |
S | 221 | S221W | tCg | tGg | 1 | 1 | AY.43 | 0.000004 |
S | 221 | S221T | Tcg | Acg | 1 | 1 | AY.44 | 0.000006 |
S | 221 | S221W | tCg | tGg | 1 | 1 | AY.44 | 0.000006 |
S | 221 | S221S | tcG | tcT | 1 | 1 | AY.46.1 | 0.001027 |
S | 221 | S221S | tcG | tcC | 1 | 1 | AY.46.2 | 0.000635 |
S | 221 | S221del | TCG | --- | 1 | 1 | AY.46.2 | 0.000635 |
S | 221 | S221S | tcG | tcT | 1 | 1 | AY.46.3 | 0.000934 |
S | 221 | S221del | TCG | --- | 1 | 1 | AY.46.6 | 0.000072 |
S | 221 | S221del | TCG | --- | 1 | 1 | AY.47 | 0.000031 |
S | 221 | S221A | Tcg | Gcg | 1 | 1 | AY.47 | 0.000031 |
S | 221 | S221A | Tcg | Gcg | 1 | 1 | AY.48 | 0.000465 |
S | 221 | S221L | tCg | tTg | 1 | 1 | AY.48 | 0.000465 |
S | 221 | S221del | TCG | --- | 1 | 1 | AY.5.3 | 0.000337 |
S | 221 | S221A | Tcg | Gcg | 1 | 1 | AY.5.3 | 0.000337 |
S | 221 | S221S | tcG | tcT | 1 | 1 | AY.51 | 0.000909 |
S | 221 | S221X | tCg | tAg | 1 | 1 | AY.52 | 0.000814 |
S | 221 | S221L | tCg | tTg | 1 | 1 | AY.56 | 0.001605 |
S | 221 | S221S | tcG | tcT | 1 | 1 | AY.57 | 0.000656 |
S | 221 | S221S | tcG | tcT | 1 | 1 | AY.58 | 0.000907 |
S | 221 | S221L | tCg | tTg | 1 | 1 | AY.59 | 0.00053 |
S | 221 | S221L | tCg | tTg | 1 | 1 | AY.60 | 0.000938 |
S | 221 | S221del1 | tcG | tc- | 1 | 1 | AY.61 | 0.000105 |
S | 221 | S221L | tCg | tTg | 1 | 1 | AY.62 | 0.000436 |
S | 221 | S221L | tCg | tTg | 1 | 1 | AY.63 | 0.000387 |
S | 221 | S221S | tcG | tcT | 1 | 1 | AY.64 | 0.000595 |
S | 221 | S221S | tcG | tcT | 1 | 1 | AY.65 | 0.000533 |
S | 221 | S221S | tcG | tcT | 1 | 1 | AY.66 | 0.00107 |
S | 221 | S221A | Tcg | Gcg | 1 | 1 | AY.68 | 0.000274 |
S | 221 | S221P | Tcg | Ccg | 1 | 1 | AY.75 | 0.000056 |
S | 221 | S221W | tCg | tGg | 1 | 1 | AY.75.1 | 0.00018 |
S | 221 | S221S | tcG | tcC | 1 | 1 | AY.8 | 0.000606 |
S | 221 | S221S | tcG | tcT | 1 | 1 | AY.81 | 0.001992 |
S | 221 | S221L | tCg | tTg | 1 | 1 | AY.82 | 0.001357 |
S | 221 | S221A | Tcg | Gcg | 1 | 1 | AY.84 | 0.000437 |
S | 221 | S221S | tcG | tcT | 1 | 1 | AY.87 | 0.000833 |
S | 221 | S221A | Tcg | Gcg | 1 | 1 | AY.88 | 0.000884 |
S | 221 | S221L | tCg | tTg | 1 | 1 | AY.9 | 0.000068 |
S | 221 | S221P | Tcg | Ccg | 1 | 1 | AY.9 | 0.000068 |
S | 221 | S221S | tcG | tcT | 1 | 1 | AY.91 | 0.00073 |
S | 221 | S221L | tCg | tTg | 1 | 1 | AY.93 | 0.000273 |
S | 221 | S221L | tCg | tTg | 1 | 1 | AY.94 | 0.000443 |
S | 221 | S221S | tcG | tcT | 1 | 1 | AY.96 | 0.002075 |
S | 221 | S221del | TCG | --- | 1 | 1 | AY.96 | 0.002075 |
S | 221 | S221del | TCG | --- | 1 | 1 | AY.98 | 0.000079 |
S | 221 | S221del | TCG | --- | 1 | 1 | AY.98.1 | 0.000048 |
S | 221 | S221S | tcG | tcT | 1 | 1 | AY.99 | 0.001049 |
S | 221 | S221L | tCg | tTg | 1 | 1 | AZ.1 | 0.000867 |
S | 221 | S221L | tCg | tTg | 1 | 1 | AZ.4 | 0.003356 |
S | 221 | S221del | TCG | --- | 1 | 1 | B | 0.000128 |
S | 221 | S221W | tCg | tGg | 1 | 1 | B | 0.000128 |
S | 221 | S221X | tCg | tAg | 1 | 1 | B.1 | 0.000009 |
S | 221 | S221A | Tcg | Gcg | 1 | 1 | B.1 | 0.000009 |
S | 221 | S221P | Tcg | Ccg | 1 | 1 | B.1 | 0.000009 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.1.1 | 0.000327 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.1.101 | 0.01 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.1.117 | 0.009709 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.1.129 | 0.009174 |
S | 221 | S221S | tcG | tcA | 1 | 1 | B.1.1.135 | 0.004695 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.1.148 | 0.008772 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.1.153 | 0.001095 |
S | 221 | S221S | tcG | tcA | 1 | 1 | B.1.1.157 | 0.000913 |
S | 221 | S221del | TCG | --- | 1 | 1 | B.1.1.159 | 0.004673 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.1.161 | 0.003534 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.1.171 | 0.003676 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.1.176 | 0.000439 |
S | 221 | S221F | tCG | tTC | 1 | 1 | B.1.1.186 | 0.003436 |
S | 221 | S221S | tcG | tcC | 1 | 1 | B.1.1.186 | 0.003436 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.1.186 | 0.003436 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.1.192 | 0.002309 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.1.207 | 0.001182 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.1.222 | 0.000204 |
S | 221 | S221del | TCG | --- | 1 | 1 | B.1.1.232 | 0.001815 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.1.241 | 0.00207 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.1.243 | 0.004082 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.1.25 | 0.000569 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.1.25 | 0.000569 |
S | 221 | S221S | tcG | tcA | 1 | 1 | B.1.1.253 | 0.002506 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.1.255 | 0.00303 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.1.263 | 0.001558 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.1.267 | 0.010101 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.1.269 | 0.001353 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.1.274 | 0.005051 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.1.277 | 0.000759 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.1.279 | 0.001121 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.1.284 | 0.000107 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.1.286 | 0.002899 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.1.294 | 0.001266 |
S | 221 | S221S | tcG | tcA | 1 | 1 | B.1.1.294 | 0.001266 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.1.306 | 0.000438 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.1.311 | 0.000358 |
S | 221 | S221del | TCG | --- | 1 | 1 | B.1.1.315 | 0.008475 |
S | 221 | S221T | Tcg | Acg | 1 | 1 | B.1.1.33 | 0.000421 |
S | 221 | S221K | TCg | AAg | 1 | 1 | B.1.1.33 | 0.000421 |
S | 221 | S221X | tCg | tAg | 1 | 1 | B.1.1.33 | 0.000421 |
S | 221 | S221S | tcG | tcA | 1 | 1 | B.1.1.34 | 0.013158 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.1.344 | 0.010753 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.1.355 | 0.015385 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.1.369 | 0.000446 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.1.369 | 0.000446 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.1.37 | 0.000193 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.1.385 | 0.004464 |
S | 221 | S221del | TCG | --- | 1 | 1 | B.1.1.39 | 0.00051 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.1.396 | 0.045455 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.1.409 | 0.002833 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.1.416 | 0.000905 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.1.464 | 0.001473 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.1.464 | 0.001473 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.1.466 | 0.008696 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.1.487 | 0.005587 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.1.487 | 0.005587 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.1.51 | 0.001718 |
S | 221 | S221A | Tcg | Gcg | 1 | 1 | B.1.1.519 | 0.00004 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.1.523 | 0.001563 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.1.524 | 0.020833 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.1.63 | 0.000386 |
S | 221 | S221del1 | tCg | t-g | 1 | 1 | B.1.1.7 | 0.000001 |
S | 221 | S221K | TCg | AAg | 1 | 1 | B.1.1.7 | 0.000001 |
S | 221 | S221del | TCG | --- | 1 | 1 | B.1.1.70 | 0.000341 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.110.3 | 0.000718 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.111 | 0.001175 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.115 | 0.021739 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.118 | 0.006711 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.126 | 0.001276 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.14 | 0.017544 |
S | 221 | S221del | TCG | --- | 1 | 1 | B.1.140 | 0.018868 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.143 | 0.021277 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.147 | 0.000756 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.160.19 | 0.035714 |
S | 221 | S221del | TCG | --- | 1 | 1 | B.1.160.23 | 0.004831 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.160.8 | 0.001289 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.170 | 0.00431 |
S | 221 | S221W | tCg | tGg | 1 | 1 | B.1.177 | 0.000013 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.177.11 | 0.001698 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.177.12 | 0.000152 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.177.24 | 0.001295 |
S | 221 | S221S | tcG | tcC | 1 | 1 | B.1.177.32 | 0.00135 |
S | 221 | S221S | tcG | tcA | 1 | 1 | B.1.177.35 | 0.000691 |
S | 221 | S221S | tcG | tcA | 1 | 1 | B.1.177.4 | 0.000211 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.177.41 | 0.0025 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.177.42 | 0.000894 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.177.53 | 0.002392 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.177.56 | 0.000668 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.177.57 | 0.000281 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.177.58 | 0.001332 |
S | 221 | S221del | TCG | --- | 1 | 1 | B.1.177.6 | 0.000977 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.177.6 | 0.000977 |
S | 221 | S221del | TCG | --- | 1 | 1 | B.1.177.62 | 0.001192 |
S | 221 | S221del | TCG | --- | 1 | 1 | B.1.177.63 | 0.002703 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.177.65 | 0.000665 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.177.68 | 0.015152 |
S | 221 | S221del | TCG | --- | 1 | 1 | B.1.177.69 | 0.001484 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.177.71 | 0.010101 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.177.72 | 0.00339 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.177.73 | 0.000566 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.177.73 | 0.000566 |
S | 221 | S221P | Tcg | Ccg | 1 | 1 | B.1.177.73 | 0.000566 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.177.78 | 0.009709 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.177.79 | 0.002342 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.177.83 | 0.001481 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.177.86 | 0.000183 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.177.87 | 0.000728 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.177.9 | 0.001332 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.189 | 0.004292 |
S | 221 | S221del1 | tCg | t-g | 1 | 1 | B.1.2 | 0.000009 |
S | 221 | S221X | tCg | tAg | 1 | 1 | B.1.2 | 0.000009 |
S | 221 | S221A | Tcg | Gcg | 1 | 1 | B.1.2 | 0.000009 |
S | 221 | S221del | TCG | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 221 | S221T | Tcg | Acg | 1 | 1 | B.1.2 | 0.000009 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.214.1 | 0.02 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.214.2 | 0.0006 |
S | 221 | S221X | tCg | tAg | 1 | 1 | B.1.22 | 0.001318 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.22 | 0.001318 |
S | 221 | S221W | tCg | tGg | 1 | 1 | B.1.221 | 0.000071 |
S | 221 | S221W | tCg | tGg | 1 | 1 | B.1.225 | 0.015385 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.23 | 0.006061 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.234 | 0.000132 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.237 | 0.004975 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.238 | 0.014925 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.247 | 0.014925 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.258.7 | 0.001912 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.258.7 | 0.001912 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.274 | 0.011905 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.279 | 0.000514 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.298 | 0.002114 |
S | 221 | S221X | tCg | tAg | 1 | 1 | B.1.301 | 0.005917 |
S | 221 | S221S | tcG | tcA | 1 | 1 | B.1.333 | 0.010526 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.348 | 0.018182 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.349 | 0.000715 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.355 | 0.011111 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.36.16 | 0.001425 |
S | 221 | S221del | TCG | --- | 1 | 1 | B.1.36.17 | 0.000494 |
S | 221 | S221del | TCG | --- | 1 | 1 | B.1.36.18 | 0.00042 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.36.20 | 0.016949 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.36.26 | 0.002857 |
S | 221 | S221del | TCG | --- | 1 | 1 | B.1.36.29 | 0.000517 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.36.31 | 0.001751 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.36.36 | 0.000602 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.36.37 | 0.002778 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.36.8 | 0.001 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.361 | 0.001289 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.369 | 0.000285 |
S | 221 | S221F | tCG | tTC | 1 | 1 | B.1.375 | 0.00082 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.380 | 0.006623 |
S | 221 | S221P | Tcg | Ccg | 1 | 1 | B.1.391 | 0.001127 |
S | 221 | S221W | tCg | tGg | 1 | 1 | B.1.396 | 0.000706 |
S | 221 | S221S | tcG | tcC | 1 | 1 | B.1.417 | 0.028571 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.422 | 0.000812 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.438.1 | 0.000107 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.470 | 0.001404 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.470 | 0.001404 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.474 | 0.001901 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.480 | 0.002488 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.497 | 0.000315 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.497 | 0.000315 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.499 | 0.00105 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.509 | 0.000866 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.511 | 0.034483 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.524 | 0.001406 |
S | 221 | S221A | Tcg | Gcg | 1 | 1 | B.1.525 | 0.000113 |
S | 221 | S221A | Tcg | Gcg | 1 | 1 | B.1.526 | 0.000024 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.538 | 0.008065 |
S | 221 | S221del | TCG | --- | 1 | 1 | B.1.561 | 0.000397 |
S | 221 | S221S | tcG | tcA | 1 | 1 | B.1.561 | 0.000397 |
S | 221 | S221S | tcG | tcA | 1 | 1 | B.1.567 | 0.003333 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.570 | 0.002941 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.574 | 0.002151 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.576 | 0.000907 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.576 | 0.000907 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.578 | 0.017857 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.580 | 0.004065 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.586 | 0.010989 |
S | 221 | S221S | tcG | tcC | 1 | 1 | B.1.589 | 0.007576 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.593 | 0.01087 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.595 | 0.000261 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.595 | 0.000261 |
S | 221 | S221S | tcG | tcA | 1 | 1 | B.1.609 | 0.000479 |
S | 221 | S221S | tcG | tcC | 1 | 1 | B.1.610 | 0.003546 |
S | 221 | S221del | TCG | --- | 1 | 1 | B.1.617.1 | 0.000129 |
S | 221 | S221P | Tcg | Ccg | 1 | 1 | B.1.617.2 | 0.000004 |
S | 221 | S221T | TcG | AcT | 1 | 1 | B.1.617.2 | 0.000004 |
S | 221 | S221W | tCg | tGg | 1 | 1 | B.1.617.2 | 0.000004 |
S | 221 | S221del | TCG | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.1.621.1 | 0.000506 |
S | 221 | S221S | tcG | tcA | 1 | 1 | B.1.623 | 0.000536 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.627 | 0.00202 |
S | 221 | S221S | tcG | tcA | 1 | 1 | B.1.634 | 0.003425 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.1.638 | 0.052632 |
S | 221 | S221H | TCG | CAC | 1 | 1 | B.1.91 | 0.002075 |
S | 221 | S221Q | TCg | CAg | 1 | 1 | B.1.91 | 0.002075 |
S | 221 | S221Y | tCG | tAC | 1 | 1 | B.1.91 | 0.002075 |
S | 221 | S221X | tCg | tAg | 1 | 1 | B.1.91 | 0.002075 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.23 | 0.002924 |
S | 221 | S221S | tcG | tcA | 1 | 1 | B.3 | 0.000831 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.31 | 0.003731 |
S | 221 | S221W | tCg | tGg | 1 | 1 | B.39 | 0.002331 |
S | 221 | S221S | tcG | tcA | 1 | 1 | B.4.5 | 0.011905 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.6 | 0.00091 |
S | 221 | S221X | tCg | tAg | 1 | 1 | B.6 | 0.00091 |
S | 221 | S221L | tCg | tTg | 1 | 1 | B.6.6 | 0.000889 |
S | 221 | S221S | tcG | tcT | 1 | 1 | B.61 | 0.005747 |
S | 221 | S221S | tcG | tcA | 1 | 1 | C.14 | 0.004329 |
S | 221 | S221L | tCg | tTg | 1 | 1 | C.33 | 0.058824 |
S | 221 | S221L | tCg | tTg | 1 | 1 | C.36 | 0.000911 |
S | 221 | S221L | tCg | tTg | 1 | 1 | C.36.3 | 0.000567 |
S | 221 | S221S | tcG | tcC | 1 | 1 | D.2 | 0.000075 |
S | 221 | S221W | tCg | tGg | 1 | 1 | D.2 | 0.000075 |
S | 221 | S221S | tcG | tcA | 1 | 1 | N.1 | 0.016949 |
S | 221 | S221L | tCg | tTg | 1 | 1 | N.4 | 0.004255 |
S | 221 | S221S | tcG | tcT | 1 | 1 | N.5 | 0.001767 |
S | 221 | S221S | tcG | tcT | 1 | 1 | N.6 | 0.007092 |
S | 221 | S221S | tcG | tcT | 1 | 1 | N.9 | 0.005952 |
S | 221 | S221Q | TCg | CAg | 1 | 1 | P.1 | 0.000016 |
S | 221 | S221I | TCG | ATC | 1 | 1 | P.1 | 0.000016 |
S | 221 | S221M | TCg | ATg | 1 | 1 | P.1 | 0.000016 |
S | 221 | S221X | tCg | tAg | 1 | 1 | P.1 | 0.000016 |
S | 221 | S221Y | tCG | tAC | 1 | 1 | P.1 | 0.000016 |
S | 221 | S221H | TCG | CAC | 1 | 1 | P.1 | 0.000016 |
S | 221 | S221L | tCg | tTg | 1 | 1 | P.1.1 | 0.000318 |
S | 221 | S221L | tCg | tTg | 1 | 1 | P.1.12 | 0.000484 |
S | 221 | S221L | tCg | tTg | 1 | 1 | P.1.13 | 0.000898 |
S | 221 | S221T | TcG | AcT | 1 | 1 | P.1.17 | 0.000162 |
S | 221 | S221S | tcG | tcT | 1 | 1 | P.1.7 | 0.000319 |
S | 221 | S221S | tcG | tcT | 1 | 1 | P.3 | 0.001595 |
S | 221 | S221L | tCg | tTg | 1 | 1 | P.3 | 0.001595 |
S | 221 | S221del | TCG | --- | 1 | 1 | Q.2 | 0.000613 |
S | 221 | S221del | TCG | --- | 1 | 1 | Q.3 | 0.000145 |
S | 221 | S221L | tCg | tTg | 1 | 1 | Q.4 | 0.000455 |
S | 221 | S221S | tcG | tcT | 1 | 1 | Q.4 | 0.000455 |
S | 221 | S221A | Tcg | Gcg | 1 | 1 | R.1 | 0.00009 |
S | 221 | S221S | tcG | tcT | 1 | 1 | S.1 | 0.00495 |
S | 221 | S221del | TCG | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|