CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 216 | L216F | nonsyn | Ctc | Ttc | 6017 | 6015 | 0.999668 | 22208-22210 | |
S | 216 | L216F | nonsyn | CtC | TtT | 6017 | 2 | 0.000332392 | 22208-22210 | |
S | 216 | L216L | syn | ctC | ctT | 1068 | 1011 | 0.946629 | 22208-22210 | |
S | 216 | L216L | syn | ctC | ctA | 1068 | 54 | 0.0505618 | 22208-22210 | |
S | 216 | L216L | syn | ctC | ctG | 1068 | 3 | 0.00280899 | 22208-22210 | |
S | 216 | L216del1 | del | ctC | ct- | 193 | 185 | 0.958549 | 22208-22210 | |
S | 216 | L216del1 | del | Ctc | -tc | 193 | 5 | 0.0259067 | 22208-22210 | |
S | 216 | L216del1 | del | cTc | c-c | 193 | 3 | 0.015544 | 22208-22210 | |
S | 216 | L216del | del | CTC | --- | 173 | 173 | 1 | 22208-22210 | |
S | 216 | L216I | nonsyn | Ctc | Atc | 97 | 87 | 0.896907 | 22208-22210 | |
S | 216 | L216I | nonsyn | CtC | AtA | 97 | 8 | 0.0824742 | 22208-22210 | |
S | 216 | L216I | nonsyn | CtC | AtT | 97 | 2 | 0.0206186 | 22208-22210 | |
S | 216 | L216P | nonsyn | cTc | cCc | 46 | 42 | 0.913043 | 22208-22210 | |
S | 216 | L216P | nonsyn | cTC | cCA | 46 | 3 | 0.0652174 | 22208-22210 | |
S | 216 | L216P | nonsyn | cTC | cCT | 46 | 1 | 0.0217391 | 22208-22210 | |
S | 216 | L216V | nonsyn | CtC | GtG | 12 | 5 | 0.416667 | 22208-22210 | |
S | 216 | L216V | nonsyn | Ctc | Gtc | 12 | 4 | 0.333333 | 22208-22210 | |
S | 216 | L216V | nonsyn | CtC | GtA | 12 | 3 | 0.25 | 22208-22210 | |
S | 216 | L216H | nonsyn | cTc | cAc | 10 | 10 | 1 | 22208-22210 | |
S | 216 | L216A | nonsyn | CTC | GCA | 9 | 5 | 0.555556 | 22208-22210 | |
S | 216 | L216A | nonsyn | CTc | GCc | 9 | 3 | 0.333333 | 22208-22210 | |
S | 216 | L216A | nonsyn | CTC | GCT | 9 | 1 | 0.111111 | 22208-22210 | |
S | 216 | L216R | nonsyn | cTc | cGc | 5 | 4 | 0.8 | 22208-22210 | |
S | 216 | L216R | nonsyn | cTC | cGT | 5 | 1 | 0.2 | 22208-22210 | |
S | 216 | L216del2 | del | CTc | --c | 4 | 3 | 0.75 | 22208-22210 | |
S | 216 | L216del2 | del | cTC | c-- | 4 | 1 | 0.25 | 22208-22210 | |
S | 216 | L216S | nonsyn | CTC | TCT | 3 | 2 | 0.666667 | 22208-22210 | |
S | 216 | L216S | nonsyn | CTc | TCc | 3 | 1 | 0.333333 | 22208-22210 | |
S | 216 | L216D | nonsyn | CTC | GAT | 2 | 2 | 1 | 22208-22210 | |
S | 216 | L216C | nonsyn | CTc | TGc | 1 | 1 | 1 | 22208-22210 | |
S | 216 | L216Q | nonsyn | cTC | cAG | 1 | 1 | 1 | 22208-22210 | |
S | 216 | L216X | nonsyn | CTC | TAG | 1 | 1 | 1 | 22208-22210 | |
S | 216 | L216Y | nonsyn | CTc | TAc | 1 | 1 | 1 | 22208-22210 | |
S | 216 | L216G | nonsyn | CTc | GGc | 1 | 1 | 1 | 22208-22210 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 216 | L216F | Ctc | Ttc | 6015 | 6017 | All | 0.00115 |
S | 216 | L216F | CtC | TtT | 2 | 6017 | All | 0 |
S | 216 | L216F | Ctc | Ttc | 2362 | 2362 | AY.4 | 0.003676 |
S | 216 | L216F | Ctc | Ttc | 1753 | 1754 | B.1.1.7 | 0.001569 |
S | 216 | L216F | CtC | TtT | 1 | 1754 | B.1.1.7 | 0.000001 |
S | 216 | L216L | ctC | ctT | 1011 | 1068 | All | 0.000193 |
S | 216 | L216L | ctC | ctA | 54 | 1068 | All | 0.00001 |
S | 216 | L216L | ctC | ctG | 3 | 1068 | All | 0.000001 |
S | 216 | L216L | ctC | ctT | 225 | 225 | C.1.2 | 0.957447 |
S | 216 | L216del1 | ctC | ct- | 185 | 193 | All | 0.000035 |
S | 216 | L216del1 | Ctc | -tc | 5 | 193 | All | 0.000001 |
S | 216 | L216del1 | cTc | c-c | 3 | 193 | All | 0.000001 |
S | 216 | L216L | ctC | ctT | 186 | 186 | B.1.1.58 | 1 |
S | 216 | L216del | CTC | --- | 173 | 173 | All | 0.000033 |
S | 216 | L216L | ctC | ctT | 171 | 171 | B.1.1.7 | 0.000153 |
S | 216 | L216F | Ctc | Ttc | 150 | 150 | AY.103 | 0.000931 |
S | 216 | L216F | Ctc | Ttc | 135 | 135 | B.1.617.2 | 0.000508 |
S | 216 | L216F | Ctc | Ttc | 130 | 130 | AY.44 | 0.000791 |
S | 216 | L216del1 | ctC | ct- | 114 | 114 | B.1.1.7 | 0.000102 |
S | 216 | L216F | Ctc | Ttc | 114 | 114 | P.1 | 0.001796 |
S | 216 | L216F | Ctc | Ttc | 110 | 110 | AY.43 | 0.000487 |
S | 216 | L216F | Ctc | Ttc | 105 | 105 | B.1.1 | 0.001905 |
S | 216 | L216I | Ctc | Atc | 87 | 97 | All | 0.000017 |
S | 216 | L216I | CtC | AtA | 8 | 97 | All | 0.000002 |
S | 216 | L216I | CtC | AtT | 2 | 97 | All | 0 |
S | 216 | L216L | ctC | ctT | 81 | 81 | B.1.526 | 0.001904 |
S | 216 | L216F | Ctc | Ttc | 77 | 77 | P.1.14 | 0.003681 |
S | 216 | L216F | Ctc | Ttc | 73 | 73 | B.1.526 | 0.001716 |
S | 216 | L216F | Ctc | Ttc | 66 | 66 | AY.3 | 0.000656 |
S | 216 | L216F | Ctc | Ttc | 53 | 53 | AY.25 | 0.000319 |
S | 216 | L216L | ctC | ctT | 49 | 49 | B.1.2 | 0.000431 |
S | 216 | L216P | cTc | cCc | 42 | 46 | All | 0.000008 |
S | 216 | L216P | cTC | cCA | 3 | 46 | All | 0.000001 |
S | 216 | L216P | cTC | cCT | 1 | 46 | All | 0 |
S | 216 | L216F | Ctc | Ttc | 42 | 42 | AY.32 | 0.022364 |
S | 216 | L216F | Ctc | Ttc | 42 | 42 | B.1.177 | 0.000553 |
S | 216 | L216F | Ctc | Ttc | 38 | 38 | AY.36 | 0.005632 |
S | 216 | L216F | Ctc | Ttc | 37 | 37 | AY.102 | 0.000981 |
S | 216 | L216F | Ctc | Ttc | 35 | 35 | B.1 | 0.000321 |
S | 216 | L216F | Ctc | Ttc | 35 | 35 | B.1.258 | 0.002329 |
S | 216 | L216del | CTC | --- | 33 | 33 | B.1.1.7 | 0.00003 |
S | 216 | L216F | Ctc | Ttc | 32 | 32 | AY.42 | 0.001287 |
S | 216 | L216L | ctC | ctT | 30 | 30 | AY.119 | 0.001059 |
S | 216 | L216L | ctC | ctT | 30 | 30 | C.36.3.1 | 0.081522 |
S | 216 | L216L | ctC | ctT | 28 | 29 | AY.4 | 0.000044 |
S | 216 | L216L | ctC | ctG | 1 | 29 | AY.4 | 0.000002 |
S | 216 | L216F | Ctc | Ttc | 27 | 27 | B.1.2 | 0.000238 |
S | 216 | L216L | ctC | ctT | 26 | 26 | P.1 | 0.00041 |
S | 216 | L216F | Ctc | Ttc | 24 | 24 | AY.4.2 | 0.000521 |
S | 216 | L216L | ctC | ctA | 22 | 24 | AY.44 | 0.000134 |
S | 216 | L216L | ctC | ctT | 2 | 24 | AY.44 | 0.000012 |
S | 216 | L216F | Ctc | Ttc | 23 | 23 | AY.53 | 0.006613 |
S | 216 | L216F | Ctc | Ttc | 23 | 23 | B.1.637 | 0.001681 |
S | 216 | L216F | Ctc | Ttc | 21 | 21 | AY.9 | 0.001419 |
S | 216 | L216F | Ctc | Ttc | 19 | 19 | AY.3.1 | 0.00162 |
S | 216 | L216F | Ctc | Ttc | 18 | 18 | AY.61 | 0.001886 |
S | 216 | L216L | ctC | ctA | 10 | 17 | B.1.617.2 | 0.000038 |
S | 216 | L216L | ctC | ctT | 7 | 17 | B.1.617.2 | 0.000026 |
S | 216 | L216del1 | ctC | ct- | 15 | 16 | P.1 | 0.000236 |
S | 216 | L216del1 | Ctc | -tc | 1 | 16 | P.1 | 0.000016 |
S | 216 | L216L | ctC | ctT | 9 | 15 | AY.43 | 0.00004 |
S | 216 | L216L | ctC | ctA | 6 | 15 | AY.43 | 0.000027 |
S | 216 | L216L | ctC | ctT | 12 | 15 | B.1 | 0.00011 |
S | 216 | L216L | ctC | ctA | 3 | 15 | B.1 | 0.000027 |
S | 216 | L216L | ctC | ctT | 15 | 15 | B.1.214.2 | 0.008993 |
S | 216 | L216F | Ctc | Ttc | 15 | 15 | Q.1 | 0.001895 |
S | 216 | L216F | Ctc | Ttc | 14 | 14 | AY.20 | 0.000544 |
S | 216 | L216F | Ctc | Ttc | 14 | 14 | AY.39 | 0.000346 |
S | 216 | L216F | Ctc | Ttc | 14 | 14 | AY.6 | 0.000576 |
S | 216 | L216F | Ctc | Ttc | 14 | 14 | AY.81 | 0.027888 |
S | 216 | L216L | ctC | ctT | 14 | 14 | B.1.1 | 0.000254 |
S | 216 | L216L | ctC | ctT | 14 | 14 | B.1.1.398 | 0.045161 |
S | 216 | L216I | Ctc | Atc | 14 | 14 | B.1.1.7 | 0.000013 |
S | 216 | L216V | CtC | GtG | 5 | 12 | All | 0.000001 |
S | 216 | L216V | Ctc | Gtc | 4 | 12 | All | 0.000001 |
S | 216 | L216V | CtC | GtA | 3 | 12 | All | 0.000001 |
S | 216 | L216F | Ctc | Ttc | 12 | 12 | AY.101 | 0.005885 |
S | 216 | L216L | ctC | ctT | 12 | 12 | AY.103 | 0.000075 |
S | 216 | L216F | Ctc | Ttc | 12 | 12 | AY.41 | 0.003527 |
S | 216 | L216del | CTC | --- | 12 | 12 | AY.43 | 0.000053 |
S | 216 | L216F | Ctc | Ttc | 12 | 12 | AY.47 | 0.000373 |
S | 216 | L216F | Ctc | Ttc | 12 | 12 | Q.8 | 0.001979 |
S | 216 | L216H | cTc | cAc | 10 | 10 | All | 0.000002 |
S | 216 | L216del | CTC | --- | 10 | 10 | B.1 | 0.000092 |
S | 216 | L216L | ctC | ctT | 10 | 10 | B.1.177.81 | 0.001893 |
S | 216 | L216I | Ctc | Atc | 10 | 10 | B.1.214.2 | 0.005995 |
S | 216 | L216del | CTC | --- | 10 | 10 | P.1.15 | 0.002323 |
S | 216 | L216F | Ctc | Ttc | 10 | 10 | P.1.7 | 0.003193 |
S | 216 | L216A | CTC | GCA | 5 | 9 | All | 0.000001 |
S | 216 | L216A | CTc | GCc | 3 | 9 | All | 0.000001 |
S | 216 | L216A | CTC | GCT | 1 | 9 | All | 0 |
S | 216 | L216del1 | ctC | ct- | 9 | 9 | AY.43 | 0.00004 |
S | 216 | L216I | Ctc | Atc | 6 | 9 | AY.43 | 0.000027 |
S | 216 | L216I | CtC | AtA | 3 | 9 | AY.43 | 0.000013 |
S | 216 | L216I | Ctc | Atc | 7 | 9 | B.1 | 0.000064 |
S | 216 | L216I | CtC | AtT | 1 | 9 | B.1 | 0.000009 |
S | 216 | L216I | CtC | AtA | 1 | 9 | B.1 | 0.000009 |
S | 216 | L216F | Ctc | Ttc | 9 | 9 | B.1.258.17 | 0.000936 |
S | 216 | L216F | Ctc | Ttc | 9 | 9 | B.1.311 | 0.002471 |
S | 216 | L216F | Ctc | Ttc | 8 | 8 | AY.5 | 0.000165 |
S | 216 | L216F | Ctc | Ttc | 8 | 8 | B.1.160 | 0.00025 |
S | 216 | L216I | Ctc | Atc | 8 | 8 | B.1.617.2 | 0.00003 |
S | 216 | L216del | CTC | --- | 8 | 8 | B.1.617.2 | 0.00003 |
S | 216 | L216del | CTC | --- | 8 | 8 | C.37 | 0.000929 |
S | 216 | L216del | CTC | --- | 8 | 8 | P.1 | 0.000126 |
S | 216 | L216F | Ctc | Ttc | 7 | 7 | AY.26 | 0.000198 |
S | 216 | L216L | ctC | ctT | 7 | 7 | AY.3 | 0.00007 |
S | 216 | L216F | Ctc | Ttc | 7 | 7 | AY.46 | 0.000729 |
S | 216 | L216F | Ctc | Ttc | 7 | 7 | AY.85 | 0.00299 |
S | 216 | L216del | CTC | --- | 7 | 7 | B.1.177 | 0.000092 |
S | 216 | L216F | Ctc | Ttc | 7 | 7 | B.1.349 | 0.005004 |
S | 216 | L216del1 | ctC | ct- | 7 | 7 | P.1.14 | 0.000335 |
S | 216 | L216A | CTc | GCc | 3 | 6 | A.2.5.1 | 0.014423 |
S | 216 | L216V | CtC | GtA | 3 | 6 | A.2.5.1 | 0.014423 |
S | 216 | L216V | Ctc | Gtc | 3 | 6 | A.2.5.1 | 0.014423 |
S | 216 | L216P | cTc | cCc | 3 | 6 | A.2.5.1 | 0.014423 |
S | 216 | L216A | CTC | GCA | 3 | 6 | A.2.5.1 | 0.014423 |
S | 216 | L216P | cTC | cCA | 3 | 6 | A.2.5.1 | 0.014423 |
S | 216 | L216F | Ctc | Ttc | 6 | 6 | AY.100 | 0.000276 |
S | 216 | L216F | Ctc | Ttc | 6 | 6 | AY.120 | 0.000223 |
S | 216 | L216del | CTC | --- | 6 | 6 | AY.25 | 0.000036 |
S | 216 | L216I | Ctc | Atc | 6 | 6 | AY.4 | 0.000009 |
S | 216 | L216F | Ctc | Ttc | 6 | 6 | AY.98.1 | 0.000291 |
S | 216 | L216L | ctC | ctT | 6 | 6 | AY.99.2 | 0.000553 |
S | 216 | L216F | Ctc | Ttc | 6 | 6 | B.1.561 | 0.002382 |
S | 216 | L216F | Ctc | Ttc | 6 | 6 | P.1.12 | 0.002904 |
S | 216 | L216L | ctC | ctT | 6 | 6 | P.1.7 | 0.001916 |
S | 216 | L216L | ctC | ctT | 6 | 6 | Q.8 | 0.000989 |
S | 216 | L216R | cTc | cGc | 4 | 5 | All | 0.000001 |
S | 216 | L216R | cTC | cGT | 1 | 5 | All | 0 |
S | 216 | L216F | Ctc | Ttc | 5 | 5 | AY.119 | 0.000177 |
S | 216 | L216L | ctC | ctT | 5 | 5 | AY.25 | 0.00003 |
S | 216 | L216P | cTc | cCc | 5 | 5 | AY.4 | 0.000008 |
S | 216 | L216F | Ctc | Ttc | 5 | 5 | AY.75 | 0.00028 |
S | 216 | L216F | Ctc | Ttc | 5 | 5 | AY.9.2 | 0.000184 |
S | 216 | L216V | CtC | GtG | 5 | 5 | B.1.351 | 0.000149 |
S | 216 | L216F | Ctc | Ttc | 5 | 5 | B.1.36 | 0.00073 |
S | 216 | L216F | Ctc | Ttc | 5 | 5 | B.1.429 | 0.000118 |
S | 216 | L216F | Ctc | Ttc | 5 | 5 | P.1.15 | 0.001162 |
S | 216 | L216del2 | CTc | --c | 3 | 4 | All | 0.000001 |
S | 216 | L216del2 | cTC | c-- | 1 | 4 | All | 0 |
S | 216 | L216F | Ctc | Ttc | 4 | 4 | AY.106 | 0.00134 |
S | 216 | L216F | Ctc | Ttc | 4 | 4 | AY.29 | 0.000063 |
S | 216 | L216I | Ctc | Atc | 4 | 4 | AY.3 | 0.00004 |
S | 216 | L216F | Ctc | Ttc | 4 | 4 | AY.70 | 0.000834 |
S | 216 | L216del1 | ctC | ct- | 4 | 4 | AY.9.2 | 0.000147 |
S | 216 | L216F | Ctc | Ttc | 4 | 4 | AY.99.2 | 0.000369 |
S | 216 | L216F | Ctc | Ttc | 4 | 4 | B.1.1.304 | 0.011236 |
S | 216 | L216P | cTc | cCc | 4 | 4 | B.1.1.7 | 0.000004 |
S | 216 | L216L | ctC | ctT | 4 | 4 | B.1.177 | 0.000053 |
S | 216 | L216F | Ctc | Ttc | 4 | 4 | B.1.177.42 | 0.003578 |
S | 216 | L216L | ctC | ctT | 4 | 4 | B.1.177.87 | 0.002911 |
S | 216 | L216del1 | ctC | ct- | 2 | 4 | B.1.2 | 0.000018 |
S | 216 | L216del1 | Ctc | -tc | 1 | 4 | B.1.2 | 0.000009 |
S | 216 | L216del1 | cTc | c-c | 1 | 4 | B.1.2 | 0.000009 |
S | 216 | L216del1 | ctC | ct- | 4 | 4 | B.1.351 | 0.000119 |
S | 216 | L216F | Ctc | Ttc | 4 | 4 | B.1.517 | 0.001708 |
S | 216 | L216F | Ctc | Ttc | 4 | 4 | D.2 | 0.0003 |
S | 216 | L216F | Ctc | Ttc | 4 | 4 | P.1.17 | 0.000647 |
S | 216 | L216L | ctC | ctA | 3 | 3 | A.2.5.1 | 0.014423 |
S | 216 | L216S | CTC | TCT | 2 | 3 | All | 0 |
S | 216 | L216S | CTc | TCc | 1 | 3 | All | 0 |
S | 216 | L216F | Ctc | Ttc | 3 | 3 | AY.114 | 0.000693 |
S | 216 | L216F | Ctc | Ttc | 3 | 3 | AY.121 | 0.000406 |
S | 216 | L216F | Ctc | Ttc | 3 | 3 | AY.19 | 0.003421 |
S | 216 | L216F | Ctc | Ttc | 3 | 3 | AY.23 | 0.000209 |
S | 216 | L216F | Ctc | Ttc | 3 | 3 | AY.30 | 0.001187 |
S | 216 | L216F | Ctc | Ttc | 3 | 3 | AY.4.4 | 0.001227 |
S | 216 | L216del | CTC | --- | 3 | 3 | AY.4.5 | 0.000322 |
S | 216 | L216del | CTC | --- | 3 | 3 | AY.44 | 0.000018 |
S | 216 | L216F | Ctc | Ttc | 3 | 3 | AY.46.4 | 0.000494 |
S | 216 | L216del1 | ctC | ct- | 3 | 3 | AY.46.6 | 0.000217 |
S | 216 | L216F | Ctc | Ttc | 3 | 3 | AY.54 | 0.000286 |
S | 216 | L216F | Ctc | Ttc | 3 | 3 | AY.55 | 0.002752 |
S | 216 | L216F | Ctc | Ttc | 3 | 3 | AY.98 | 0.000237 |
S | 216 | L216del1 | ctC | ct- | 3 | 3 | B.1.1 | 0.000054 |
S | 216 | L216F | Ctc | Ttc | 3 | 3 | B.1.1.214 | 0.000166 |
S | 216 | L216F | Ctc | Ttc | 3 | 3 | B.1.1.519 | 0.000119 |
S | 216 | L216del | CTC | --- | 3 | 3 | B.1.214.1 | 0.06 |
S | 216 | L216F | Ctc | Ttc | 3 | 3 | B.1.320 | 0.003736 |
S | 216 | L216L | ctC | ctT | 3 | 3 | B.1.351 | 0.000089 |
S | 216 | L216I | Ctc | Atc | 3 | 3 | B.1.36 | 0.000438 |
S | 216 | L216F | Ctc | Ttc | 3 | 3 | B.1.577 | 0.002062 |
S | 216 | L216F | Ctc | Ttc | 3 | 3 | B.1.596 | 0.000261 |
S | 216 | L216L | ctC | ctT | 3 | 3 | C.37 | 0.000348 |
S | 216 | L216L | ctC | ctT | 3 | 3 | D.2 | 0.000225 |
S | 216 | L216L | ctC | ctT | 3 | 3 | P.1.14 | 0.000143 |
S | 216 | L216del | CTC | --- | 2 | 2 | 0.111111 | |
S | 216 | L216del1 | ctC | ct- | 2 | 2 | 0.111111 | |
S | 216 | L216L | ctC | ctT | 1 | 2 | A | 0.000387 |
S | 216 | L216I | Ctc | Atc | 1 | 2 | A | 0.000387 |
S | 216 | L216I | CtC | AtA | 1 | 2 | A | 0.000387 |
S | 216 | L216L | ctC | ctA | 1 | 2 | A | 0.000387 |
S | 216 | L216A | CTC | GCA | 2 | 2 | A.2.5 | 0.000998 |
S | 216 | L216D | CTC | GAT | 2 | 2 | All | 0 |
S | 216 | L216del | CTC | --- | 2 | 2 | AY.100 | 0.000092 |
S | 216 | L216I | Ctc | Atc | 2 | 2 | AY.100 | 0.000092 |
S | 216 | L216I | Ctc | Atc | 2 | 2 | AY.102 | 0.000053 |
S | 216 | L216H | cTc | cAc | 2 | 2 | AY.102 | 0.000053 |
S | 216 | L216del | CTC | --- | 2 | 2 | AY.120 | 0.000074 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | AY.13 | 0.000322 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | AY.16.1 | 0.00094 |
S | 216 | L216I | CtC | AtA | 1 | 2 | AY.23 | 0.00007 |
S | 216 | L216I | Ctc | Atc | 1 | 2 | AY.23 | 0.00007 |
S | 216 | L216P | cTc | cCc | 2 | 2 | AY.26 | 0.000057 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | AY.27 | 0.000129 |
S | 216 | L216I | Ctc | Atc | 2 | 2 | AY.33 | 0.000134 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | AY.39.1 | 0.000079 |
S | 216 | L216H | cTc | cAc | 2 | 2 | AY.4 | 0.000003 |
S | 216 | L216del | CTC | --- | 2 | 2 | AY.4 | 0.000003 |
S | 216 | L216del1 | Ctc | -tc | 1 | 2 | AY.4.5 | 0.000107 |
S | 216 | L216del1 | ctC | ct- | 1 | 2 | AY.4.5 | 0.000107 |
S | 216 | L216I | Ctc | Atc | 2 | 2 | AY.42 | 0.00008 |
S | 216 | L216P | cTc | cCc | 2 | 2 | AY.43 | 0.000009 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | AY.45 | 0.000243 |
S | 216 | L216del1 | ctC | ct- | 2 | 2 | AY.46 | 0.000208 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | AY.46.6 | 0.000144 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | AY.52 | 0.001629 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | AY.56 | 0.00321 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | AY.64 | 0.00119 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | AY.7 | 0.000392 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | AY.74 | 0.000231 |
S | 216 | L216L | ctC | ctT | 2 | 2 | AY.75 | 0.000112 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | AY.93 | 0.000546 |
S | 216 | L216del | CTC | --- | 2 | 2 | AY.95 | 0.001522 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | AY.97 | 0.003401 |
S | 216 | L216del | CTC | --- | 2 | 2 | AY.98.1 | 0.000097 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | AY.99 | 0.002099 |
S | 216 | L216L | ctC | ctA | 2 | 2 | B | 0.000256 |
S | 216 | L216I | CtC | AtA | 1 | 2 | B | 0.000128 |
S | 216 | L216I | Ctc | Atc | 1 | 2 | B | 0.000128 |
S | 216 | L216P | cTc | cCc | 2 | 2 | B.1 | 0.000018 |
S | 216 | L216del1 | ctC | ct- | 1 | 2 | B.1 | 0.000009 |
S | 216 | L216del1 | cTc | c-c | 1 | 2 | B.1 | 0.000009 |
S | 216 | L216del | CTC | --- | 2 | 2 | B.1.1 | 0.000036 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | B.1.1.170 | 0.002494 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | B.1.1.222 | 0.000408 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | B.1.1.291 | 0.001485 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | B.1.1.306 | 0.000877 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | B.1.1.316 | 0.00185 |
S | 216 | L216P | cTc | cCc | 2 | 2 | B.1.177 | 0.000026 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | B.1.177.40 | 0.010309 |
S | 216 | L216I | Ctc | Atc | 2 | 2 | B.1.177.75 | 0.002081 |
S | 216 | L216P | cTc | cCc | 2 | 2 | B.1.2 | 0.000018 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | B.1.214.2 | 0.001199 |
S | 216 | L216D | CTC | GAT | 2 | 2 | B.1.214.2 | 0.001199 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | B.1.221 | 0.000142 |
S | 216 | L216del | CTC | --- | 2 | 2 | B.1.258 | 0.000133 |
S | 216 | L216I | CtC | AtA | 1 | 2 | B.1.301 | 0.005917 |
S | 216 | L216I | Ctc | Atc | 1 | 2 | B.1.301 | 0.005917 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | B.1.351 | 0.000059 |
S | 216 | L216H | cTc | cAc | 2 | 2 | B.1.36.8 | 0.002 |
S | 216 | L216P | cTc | cCc | 1 | 2 | B.1.391 | 0.001127 |
S | 216 | L216S | CTC | TCT | 1 | 2 | B.1.391 | 0.001127 |
S | 216 | L216F | CtC | TtT | 1 | 2 | B.1.391 | 0.001127 |
S | 216 | L216F | Ctc | Ttc | 1 | 2 | B.1.391 | 0.001127 |
S | 216 | L216S | CTc | TCc | 1 | 2 | B.1.391 | 0.001127 |
S | 216 | L216P | cTC | cCT | 1 | 2 | B.1.391 | 0.001127 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | B.1.470 | 0.002809 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | B.1.474 | 0.003802 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | B.1.525 | 0.000226 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | B.1.575 | 0.000607 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | B.1.617.1 | 0.000258 |
S | 216 | L216P | cTc | cCc | 2 | 2 | B.1.617.2 | 0.000008 |
S | 216 | L216del1 | ctC | ct- | 2 | 2 | B.1.627 | 0.00404 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | B.1.69 | 0.071429 |
S | 216 | L216L | ctC | ctT | 2 | 2 | B.1.9 | 0.012346 |
S | 216 | L216L | ctC | ctT | 2 | 2 | C.1 | 0.004785 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | C.30 | 0.003454 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | C.36.3 | 0.001134 |
S | 216 | L216del | CTC | --- | 2 | 2 | P.1.1 | 0.000635 |
S | 216 | L216del1 | ctC | ct- | 1 | 2 | P.1.12 | 0.000484 |
S | 216 | L216del1 | Ctc | -tc | 1 | 2 | P.1.12 | 0.000484 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | P.1.13 | 0.001797 |
S | 216 | L216H | cTc | cAc | 2 | 2 | P.1.14 | 0.000096 |
S | 216 | L216del1 | ctC | ct- | 2 | 2 | P.1.7 | 0.000639 |
S | 216 | L216F | Ctc | Ttc | 2 | 2 | P.2 | 0.000373 |
S | 216 | L216I | Ctc | Atc | 2 | 2 | Q.1 | 0.000253 |
S | 216 | L216del1 | ctC | ct- | 2 | 2 | Q.4 | 0.00091 |
S | 216 | L216I | Ctc | Atc | 1 | 1 | A.2.4 | 0.003367 |
S | 216 | L216del | CTC | --- | 1 | 1 | A.2.5 | 0.000499 |
S | 216 | L216L | ctC | ctT | 1 | 1 | A.2.5 | 0.000499 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | A.2.5.2 | 0.001572 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | AD.2 | 0.000219 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | AE.8 | 0.000489 |
S | 216 | L216G | CTc | GGc | 1 | 1 | All | 0 |
S | 216 | L216C | CTc | TGc | 1 | 1 | All | 0 |
S | 216 | L216Q | cTC | cAG | 1 | 1 | All | 0 |
S | 216 | L216X | CTC | TAG | 1 | 1 | All | 0 |
S | 216 | L216Y | CTc | TAc | 1 | 1 | All | 0 |
S | 216 | L216P | cTc | cCc | 1 | 1 | AN.1 | 0.02 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | AY.10 | 0.00053 |
S | 216 | L216L | ctC | ctT | 1 | 1 | AY.100 | 0.000046 |
S | 216 | L216del | CTC | --- | 1 | 1 | AY.101 | 0.00049 |
S | 216 | L216P | cTc | cCc | 1 | 1 | AY.102 | 0.000027 |
S | 216 | L216del | CTC | --- | 1 | 1 | AY.102 | 0.000027 |
S | 216 | L216L | ctC | ctG | 1 | 1 | AY.102 | 0.000027 |
S | 216 | L216I | Ctc | Atc | 1 | 1 | AY.103 | 0.000006 |
S | 216 | L216P | cTc | cCc | 1 | 1 | AY.103 | 0.000006 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | AY.107 | 0.000466 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | AY.113 | 0.000142 |
S | 216 | L216L | ctC | ctT | 1 | 1 | AY.116 | 0.000287 |
S | 216 | L216L | ctC | ctA | 1 | 1 | AY.118 | 0.000063 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | AY.118 | 0.000063 |
S | 216 | L216del | CTC | --- | 1 | 1 | AY.118 | 0.000063 |
S | 216 | L216H | cTc | cAc | 1 | 1 | AY.120 | 0.000037 |
S | 216 | L216L | ctC | ctT | 1 | 1 | AY.120 | 0.000037 |
S | 216 | L216del1 | ctC | ct- | 1 | 1 | AY.121 | 0.000135 |
S | 216 | L216I | Ctc | Atc | 1 | 1 | AY.121 | 0.000135 |
S | 216 | L216L | ctC | ctT | 1 | 1 | AY.121 | 0.000135 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | AY.14 | 0.000088 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | AY.16 | 0.00038 |
S | 216 | L216del | CTC | --- | 1 | 1 | AY.20 | 0.000039 |
S | 216 | L216P | cTc | cCc | 1 | 1 | AY.23 | 0.00007 |
S | 216 | L216L | ctC | ctA | 1 | 1 | AY.23 | 0.00007 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | AY.24 | 0.000431 |
S | 216 | L216del | CTC | --- | 1 | 1 | AY.24 | 0.000431 |
S | 216 | L216I | Ctc | Atc | 1 | 1 | AY.25 | 0.000006 |
S | 216 | L216P | cTc | cCc | 1 | 1 | AY.25 | 0.000006 |
S | 216 | L216del1 | ctC | ct- | 1 | 1 | AY.25 | 0.000006 |
S | 216 | L216I | Ctc | Atc | 1 | 1 | AY.26 | 0.000028 |
S | 216 | L216L | ctC | ctT | 1 | 1 | AY.26 | 0.000028 |
S | 216 | L216del | CTC | --- | 1 | 1 | AY.26 | 0.000028 |
S | 216 | L216L | ctC | ctT | 1 | 1 | AY.29 | 0.000016 |
S | 216 | L216del | CTC | --- | 1 | 1 | AY.29 | 0.000016 |
S | 216 | L216del | CTC | --- | 1 | 1 | AY.3 | 0.00001 |
S | 216 | L216L | ctC | ctT | 1 | 1 | AY.30 | 0.000396 |
S | 216 | L216del | CTC | --- | 1 | 1 | AY.30 | 0.000396 |
S | 216 | L216del1 | ctC | ct- | 1 | 1 | AY.32 | 0.000532 |
S | 216 | L216L | ctC | ctA | 1 | 1 | AY.33 | 0.000067 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | AY.34 | 0.000097 |
S | 216 | L216L | ctC | ctT | 1 | 1 | AY.34.1 | 0.00051 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | AY.35 | 0.000233 |
S | 216 | L216L | ctC | ctT | 1 | 1 | AY.36 | 0.000148 |
S | 216 | L216L | ctC | ctA | 1 | 1 | AY.39 | 0.000025 |
S | 216 | L216Y | CTc | TAc | 1 | 1 | AY.4 | 0.000002 |
S | 216 | L216del1 | ctC | ct- | 1 | 1 | AY.4 | 0.000002 |
S | 216 | L216P | cTc | cCc | 1 | 1 | AY.4.2 | 0.000022 |
S | 216 | L216L | ctC | ctT | 1 | 1 | AY.4.2 | 0.000022 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | AY.4.5 | 0.000107 |
S | 216 | L216del2 | CTc | --c | 1 | 1 | AY.4.5 | 0.000107 |
S | 216 | L216del1 | ctC | ct- | 1 | 1 | AY.41 | 0.000294 |
S | 216 | L216I | Ctc | Atc | 1 | 1 | AY.41 | 0.000294 |
S | 216 | L216R | cTc | cGc | 1 | 1 | AY.43 | 0.000004 |
S | 216 | L216A | CTC | GCT | 1 | 1 | AY.43 | 0.000004 |
S | 216 | L216P | cTc | cCc | 1 | 1 | AY.44 | 0.000006 |
S | 216 | L216del1 | ctC | ct- | 1 | 1 | AY.45 | 0.000122 |
S | 216 | L216L | ctC | ctT | 1 | 1 | AY.45 | 0.000122 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | AY.46.2 | 0.000635 |
S | 216 | L216del | CTC | --- | 1 | 1 | AY.46.2 | 0.000635 |
S | 216 | L216L | ctC | ctT | 1 | 1 | AY.46.6 | 0.000072 |
S | 216 | L216R | cTc | cGc | 1 | 1 | AY.46.6 | 0.000072 |
S | 216 | L216del | CTC | --- | 1 | 1 | AY.46.6 | 0.000072 |
S | 216 | L216del | CTC | --- | 1 | 1 | AY.47 | 0.000031 |
S | 216 | L216del1 | ctC | ct- | 1 | 1 | AY.47 | 0.000031 |
S | 216 | L216del1 | ctC | ct- | 1 | 1 | AY.48 | 0.000465 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | AY.49 | 0.003195 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | AY.5.3 | 0.000337 |
S | 216 | L216del | CTC | --- | 1 | 1 | AY.5.3 | 0.000337 |
S | 216 | L216L | ctC | ctA | 1 | 1 | AY.52 | 0.000814 |
S | 216 | L216P | cTc | cCc | 1 | 1 | AY.6 | 0.000041 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | AY.62 | 0.000436 |
S | 216 | L216del | CTC | --- | 1 | 1 | AY.65 | 0.000533 |
S | 216 | L216del1 | ctC | ct- | 1 | 1 | AY.68 | 0.000274 |
S | 216 | L216P | cTc | cCc | 1 | 1 | AY.69 | 0.000187 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | AY.69 | 0.000187 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | AY.84 | 0.000437 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | AY.86 | 0.00083 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | AY.9.1 | 0.000084 |
S | 216 | L216I | Ctc | Atc | 1 | 1 | AY.9.2 | 0.000037 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | AY.92 | 0.000287 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | AY.94 | 0.000443 |
S | 216 | L216L | ctC | ctT | 1 | 1 | AY.94 | 0.000443 |
S | 216 | L216del | CTC | --- | 1 | 1 | AY.96 | 0.002075 |
S | 216 | L216del | CTC | --- | 1 | 1 | AY.98 | 0.000079 |
S | 216 | L216L | ctC | ctT | 1 | 1 | AY.98.1 | 0.000048 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | AZ.1 | 0.000867 |
S | 216 | L216del | CTC | --- | 1 | 1 | B | 0.000128 |
S | 216 | L216I | Ctc | Atc | 1 | 1 | B.1.1 | 0.000018 |
S | 216 | L216L | ctC | ctT | 1 | 1 | B.1.1.1 | 0.000327 |
S | 216 | L216del1 | Ctc | -tc | 1 | 1 | B.1.1.121 | 0.002427 |
S | 216 | L216del | CTC | --- | 1 | 1 | B.1.1.159 | 0.004673 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.1.176 | 0.000439 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.1.220 | 0.001859 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.1.284 | 0.000107 |
S | 216 | L216del | CTC | --- | 1 | 1 | B.1.1.315 | 0.008475 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.1.325 | 0.025641 |
S | 216 | L216L | ctC | ctT | 1 | 1 | B.1.1.33 | 0.000421 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.1.37 | 0.000193 |
S | 216 | L216L | ctC | ctT | 1 | 1 | B.1.1.39 | 0.00051 |
S | 216 | L216del | CTC | --- | 1 | 1 | B.1.1.39 | 0.00051 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.1.409 | 0.002833 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.1.423 | 0.0625 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.1.432 | 0.001266 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.1.434 | 0.000349 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.1.486 | 0.001577 |
S | 216 | L216P | cTc | cCc | 1 | 1 | B.1.1.519 | 0.00004 |
S | 216 | L216L | ctC | ctT | 1 | 1 | B.1.1.519 | 0.00004 |
S | 216 | L216I | Ctc | Atc | 1 | 1 | B.1.1.63 | 0.000386 |
S | 216 | L216del2 | CTc | --c | 1 | 1 | B.1.1.7 | 0.000001 |
S | 216 | L216Q | cTC | cAG | 1 | 1 | B.1.1.7 | 0.000001 |
S | 216 | L216del | CTC | --- | 1 | 1 | B.1.1.70 | 0.000341 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.110.3 | 0.000718 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.139 | 0.000733 |
S | 216 | L216del | CTC | --- | 1 | 1 | B.1.140 | 0.018868 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.151 | 0.011111 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.157 | 0.002985 |
S | 216 | L216P | cTc | cCc | 1 | 1 | B.1.160 | 0.000031 |
S | 216 | L216L | ctC | ctT | 1 | 1 | B.1.160 | 0.000031 |
S | 216 | L216L | ctC | ctT | 1 | 1 | B.1.160.16 | 0.000929 |
S | 216 | L216del | CTC | --- | 1 | 1 | B.1.160.23 | 0.004831 |
S | 216 | L216I | CtC | AtT | 1 | 1 | B.1.167 | 0.007812 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.177.12 | 0.000152 |
S | 216 | L216P | cTc | cCc | 1 | 1 | B.1.177.15 | 0.000631 |
S | 216 | L216del | CTC | --- | 1 | 1 | B.1.177.16 | 0.000664 |
S | 216 | L216P | cTc | cCc | 1 | 1 | B.1.177.21 | 0.000076 |
S | 216 | L216L | ctC | ctT | 1 | 1 | B.1.177.21 | 0.000076 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.177.4 | 0.000211 |
S | 216 | L216del | CTC | --- | 1 | 1 | B.1.177.51 | 0.004566 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.177.56 | 0.000668 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.177.57 | 0.000281 |
S | 216 | L216del | CTC | --- | 1 | 1 | B.1.177.6 | 0.000977 |
S | 216 | L216del | CTC | --- | 1 | 1 | B.1.177.62 | 0.001192 |
S | 216 | L216del | CTC | --- | 1 | 1 | B.1.177.69 | 0.001484 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.177.7 | 0.000165 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.177.79 | 0.002342 |
S | 216 | L216del1 | ctC | ct- | 1 | 1 | B.1.177.81 | 0.000189 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.177.9 | 0.001332 |
S | 216 | L216del | CTC | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 216 | L216I | Ctc | Atc | 1 | 1 | B.1.2 | 0.000009 |
S | 216 | L216S | CTC | TCT | 1 | 1 | B.1.214.2 | 0.0006 |
S | 216 | L216del | CTC | --- | 1 | 1 | B.1.218 | 0.005155 |
S | 216 | L216L | ctC | ctT | 1 | 1 | B.1.221 | 0.000071 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.243 | 0.00007 |
S | 216 | L216L | ctC | ctT | 1 | 1 | B.1.243 | 0.00007 |
S | 216 | L216P | cTc | cCc | 1 | 1 | B.1.243 | 0.00007 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.258.7 | 0.001912 |
S | 216 | L216L | ctC | ctA | 1 | 1 | B.1.301 | 0.005917 |
S | 216 | L216R | cTc | cGc | 1 | 1 | B.1.311 | 0.000275 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.319 | 0.003049 |
S | 216 | L216del | CTC | --- | 1 | 1 | B.1.351 | 0.00003 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.356 | 0.001727 |
S | 216 | L216del1 | cTc | c-c | 1 | 1 | B.1.36 | 0.000146 |
S | 216 | L216del | CTC | --- | 1 | 1 | B.1.36.18 | 0.00042 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.36.26 | 0.002857 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.36.28 | 0.005747 |
S | 216 | L216del | CTC | --- | 1 | 1 | B.1.36.29 | 0.000517 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.369 | 0.000285 |
S | 216 | L216I | Ctc | Atc | 1 | 1 | B.1.370 | 0.008 |
S | 216 | L216L | ctC | ctT | 1 | 1 | B.1.391 | 0.001127 |
S | 216 | L216L | ctC | ctT | 1 | 1 | B.1.396 | 0.000706 |
S | 216 | L216del2 | CTc | --c | 1 | 1 | B.1.409 | 0.000781 |
S | 216 | L216L | ctC | ctT | 1 | 1 | B.1.429 | 0.000024 |
S | 216 | L216P | cTc | cCc | 1 | 1 | B.1.429 | 0.000024 |
S | 216 | L216L | ctC | ctA | 1 | 1 | B.1.438.1 | 0.000107 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.438.1 | 0.000107 |
S | 216 | L216L | ctC | ctT | 1 | 1 | B.1.466.2 | 0.000391 |
S | 216 | L216del | CTC | --- | 1 | 1 | B.1.525 | 0.000113 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.558 | 0.004566 |
S | 216 | L216del | CTC | --- | 1 | 1 | B.1.561 | 0.000397 |
S | 216 | L216L | ctC | ctT | 1 | 1 | B.1.561 | 0.000397 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.564 | 0.000426 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.565 | 0.00081 |
S | 216 | L216L | ctC | ctT | 1 | 1 | B.1.575 | 0.000303 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.580 | 0.004065 |
S | 216 | L216R | cTC | cGT | 1 | 1 | B.1.582 | 0.000491 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.609 | 0.000479 |
S | 216 | L216del | CTC | --- | 1 | 1 | B.1.617.1 | 0.000129 |
S | 216 | L216R | cTc | cGc | 1 | 1 | B.1.617.2 | 0.000004 |
S | 216 | L216del | CTC | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 216 | L216X | CTC | TAG | 1 | 1 | B.1.621 | 0.000089 |
S | 216 | L216del | CTC | --- | 1 | 1 | B.1.621 | 0.000089 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.623 | 0.000536 |
S | 216 | L216I | Ctc | Atc | 1 | 1 | B.1.623 | 0.000536 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.628 | 0.000352 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.629 | 0.013333 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | B.1.630 | 0.005236 |
S | 216 | L216del | CTC | --- | 1 | 1 | B.1.630 | 0.005236 |
S | 216 | L216L | ctC | ctG | 1 | 1 | B.1.637 | 0.000073 |
S | 216 | L216del | CTC | --- | 1 | 1 | B.1.638 | 0.052632 |
S | 216 | L216I | Ctc | Atc | 1 | 1 | B.6 | 0.00091 |
S | 216 | L216C | CTc | TGc | 1 | 1 | B.6 | 0.00091 |
S | 216 | L216del | CTC | --- | 1 | 1 | C.16 | 0.00106 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | C.35 | 0.000774 |
S | 216 | L216L | ctC | ctT | 1 | 1 | C.35 | 0.000774 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | C.36 | 0.000911 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | C.37 | 0.000116 |
S | 216 | L216H | cTc | cAc | 1 | 1 | D.2 | 0.000075 |
S | 216 | L216G | CTc | GGc | 1 | 1 | P.1 | 0.000016 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | P.1.1 | 0.000318 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | P.1.11 | 0.010204 |
S | 216 | L216V | Ctc | Gtc | 1 | 1 | P.1.14 | 0.000048 |
S | 216 | L216P | cTc | cCc | 1 | 1 | P.1.16 | 0.000374 |
S | 216 | L216L | ctC | ctT | 1 | 1 | P.1.17 | 0.000162 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | P.1.2 | 0.001156 |
S | 216 | L216P | cTc | cCc | 1 | 1 | P.1.4 | 0.000977 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | P.1.4 | 0.000977 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | P.3 | 0.001595 |
S | 216 | L216L | ctC | ctT | 1 | 1 | Q.1 | 0.000126 |
S | 216 | L216del1 | ctC | ct- | 1 | 1 | Q.1 | 0.000126 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | Q.2 | 0.000613 |
S | 216 | L216del | CTC | --- | 1 | 1 | Q.2 | 0.000613 |
S | 216 | L216F | Ctc | Ttc | 1 | 1 | Q.3 | 0.000145 |
S | 216 | L216del2 | cTC | c-- | 1 | 1 | Q.3 | 0.000145 |
S | 216 | L216del | CTC | --- | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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