CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 215 | D215D | syn | gaT | gaC | 850 | 850 | 1 | 22205-22207 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 215 | D215D | gaT | gaC | 850 | 850 | All | 0.000163 |
S | 215 | D215D | gaT | gaC | 165 | 165 | B.1.160.24 | 0.730088 |
S | 215 | D215D | gaT | gaC | 113 | 113 | B.1.1.7 | 0.000101 |
S | 215 | D215D | gaT | gaC | 85 | 85 | AY.75 | 0.004762 |
S | 215 | D215D | gaT | gaC | 55 | 55 | B.1.2 | 0.000484 |
S | 215 | D215D | gaT | gaC | 44 | 44 | AY.44 | 0.000268 |
S | 215 | D215D | gaT | gaC | 36 | 36 | B.1.617.2 | 0.000136 |
S | 215 | D215D | gaT | gaC | 35 | 35 | P.1.10 | 0.009431 |
S | 215 | D215D | gaT | gaC | 24 | 24 | AY.4 | 0.000037 |
S | 215 | D215D | gaT | gaC | 17 | 17 | AY.4.2 | 0.000369 |
S | 215 | D215D | gaT | gaC | 17 | 17 | B.1.242 | 0.320755 |
S | 215 | D215D | gaT | gaC | 13 | 13 | P.1 | 0.000205 |
S | 215 | D215D | gaT | gaC | 12 | 12 | AY.103 | 0.000075 |
S | 215 | D215D | gaT | gaC | 10 | 10 | AY.25 | 0.00006 |
S | 215 | D215D | gaT | gaC | 10 | 10 | AY.3 | 0.000099 |
S | 215 | D215D | gaT | gaC | 9 | 9 | AY.102 | 0.000239 |
S | 215 | D215D | gaT | gaC | 9 | 9 | B.1.1 | 0.000163 |
S | 215 | D215D | gaT | gaC | 9 | 9 | B.1.177.53 | 0.021531 |
S | 215 | D215D | gaT | gaC | 8 | 8 | AY.69 | 0.001493 |
S | 215 | D215D | gaT | gaC | 8 | 8 | B.1.177 | 0.000105 |
S | 215 | D215D | gaT | gaC | 7 | 7 | A.1 | 0.001973 |
S | 215 | D215D | gaT | gaC | 7 | 7 | AY.26 | 0.000198 |
S | 215 | D215D | gaT | gaC | 7 | 7 | B.1.637 | 0.000512 |
S | 215 | D215D | gaT | gaC | 6 | 6 | AY.43 | 0.000027 |
S | 215 | D215D | gaT | gaC | 6 | 6 | B.1 | 0.000055 |
S | 215 | D215D | gaT | gaC | 6 | 6 | B.1.1.220 | 0.011152 |
S | 215 | D215D | gaT | gaC | 6 | 6 | B.1.526 | 0.000141 |
S | 215 | D215D | gaT | gaC | 5 | 5 | A.2.4 | 0.016835 |
S | 215 | D215D | gaT | gaC | 5 | 5 | AY.120 | 0.000186 |
S | 215 | D215D | gaT | gaC | 5 | 5 | B.1.311 | 0.001373 |
S | 215 | D215D | gaT | gaC | 5 | 5 | B.1.36.16 | 0.007123 |
S | 215 | D215D | gaT | gaC | 5 | 5 | B.1.588 | 0.00455 |
S | 215 | D215D | gaT | gaC | 4 | 4 | AY.39 | 0.000099 |
S | 215 | D215D | gaT | gaC | 4 | 4 | AY.39.1 | 0.000158 |
S | 215 | D215D | gaT | gaC | 4 | 4 | B.1.596 | 0.000349 |
S | 215 | D215D | gaT | gaC | 3 | 3 | AY.16.1 | 0.00141 |
S | 215 | D215D | gaT | gaC | 3 | 3 | B.1.1.28 | 0.000934 |
S | 215 | D215D | gaT | gaC | 3 | 3 | B.1.1.315 | 0.025424 |
S | 215 | D215D | gaT | gaC | 3 | 3 | B.1.258 | 0.0002 |
S | 215 | D215D | gaT | gaC | 2 | 2 | AY.106 | 0.00067 |
S | 215 | D215D | gaT | gaC | 2 | 2 | AY.20 | 0.000078 |
S | 215 | D215D | gaT | gaC | 2 | 2 | AY.29 | 0.000032 |
S | 215 | D215D | gaT | gaC | 2 | 2 | AY.47 | 0.000062 |
S | 215 | D215D | gaT | gaC | 2 | 2 | AY.5 | 0.000041 |
S | 215 | D215D | gaT | gaC | 2 | 2 | AY.54 | 0.000191 |
S | 215 | D215D | gaT | gaC | 2 | 2 | AY.79 | 0.002421 |
S | 215 | D215D | gaT | gaC | 2 | 2 | B.1.1.222 | 0.000408 |
S | 215 | D215D | gaT | gaC | 2 | 2 | B.1.1.274 | 0.010101 |
S | 215 | D215D | gaT | gaC | 2 | 2 | B.1.1.33 | 0.000842 |
S | 215 | D215D | gaT | gaC | 2 | 2 | B.1.36 | 0.000292 |
S | 215 | D215D | gaT | gaC | 2 | 2 | B.1.36.29 | 0.001035 |
S | 215 | D215D | gaT | gaC | 2 | 2 | B.1.427 | 0.000101 |
S | 215 | D215D | gaT | gaC | 2 | 2 | B.1.495 | 0.018182 |
S | 215 | D215D | gaT | gaC | 2 | 2 | B.1.609 | 0.000959 |
S | 215 | D215D | gaT | gaC | 1 | 1 | A.2.5.2 | 0.001572 |
S | 215 | D215D | gaT | gaC | 1 | 1 | AD.2 | 0.000219 |
S | 215 | D215D | gaT | gaC | 1 | 1 | AU.3 | 0.00211 |
S | 215 | D215D | gaT | gaC | 1 | 1 | AY.10 | 0.00053 |
S | 215 | D215D | gaT | gaC | 1 | 1 | AY.100 | 0.000046 |
S | 215 | D215D | gaT | gaC | 1 | 1 | AY.116 | 0.000287 |
S | 215 | D215D | gaT | gaC | 1 | 1 | AY.117 | 0.000085 |
S | 215 | D215D | gaT | gaC | 1 | 1 | AY.119 | 0.000035 |
S | 215 | D215D | gaT | gaC | 1 | 1 | AY.3.1 | 0.000085 |
S | 215 | D215D | gaT | gaC | 1 | 1 | AY.35 | 0.000233 |
S | 215 | D215D | gaT | gaC | 1 | 1 | AY.4.4 | 0.000409 |
S | 215 | D215D | gaT | gaC | 1 | 1 | AY.42 | 0.00004 |
S | 215 | D215D | gaT | gaC | 1 | 1 | AY.48 | 0.000465 |
S | 215 | D215D | gaT | gaC | 1 | 1 | AY.6 | 0.000041 |
S | 215 | D215D | gaT | gaC | 1 | 1 | AY.83 | 0.001724 |
S | 215 | D215D | gaT | gaC | 1 | 1 | AY.9.2 | 0.000037 |
S | 215 | D215D | gaT | gaC | 1 | 1 | AY.98 | 0.000079 |
S | 215 | D215D | gaT | gaC | 1 | 1 | AY.98.1 | 0.000048 |
S | 215 | D215D | gaT | gaC | 1 | 1 | AY.99.2 | 0.000092 |
S | 215 | D215D | gaT | gaC | 1 | 1 | B.1.1.1 | 0.000327 |
S | 215 | D215D | gaT | gaC | 1 | 1 | B.1.1.170 | 0.001247 |
S | 215 | D215D | gaT | gaC | 1 | 1 | B.1.1.214 | 0.000055 |
S | 215 | D215D | gaT | gaC | 1 | 1 | B.1.1.27 | 0.00565 |
S | 215 | D215D | gaT | gaC | 1 | 1 | B.1.1.298 | 0.000862 |
S | 215 | D215D | gaT | gaC | 1 | 1 | B.1.1.348 | 0.000796 |
S | 215 | D215D | gaT | gaC | 1 | 1 | B.1.1.413 | 0.006897 |
S | 215 | D215D | gaT | gaC | 1 | 1 | B.1.1.519 | 0.00004 |
S | 215 | D215D | gaT | gaC | 1 | 1 | B.1.1.63 | 0.000386 |
S | 215 | D215D | gaT | gaC | 1 | 1 | B.1.139 | 0.000733 |
S | 215 | D215D | gaT | gaC | 1 | 1 | B.1.147 | 0.000756 |
S | 215 | D215D | gaT | gaC | 1 | 1 | B.1.177.21 | 0.000076 |
S | 215 | D215D | gaT | gaC | 1 | 1 | B.1.177.60 | 0.000218 |
S | 215 | D215D | gaT | gaC | 1 | 1 | B.1.177.86 | 0.000183 |
S | 215 | D215D | gaT | gaC | 1 | 1 | B.1.425 | 0.002994 |
S | 215 | D215D | gaT | gaC | 1 | 1 | B.1.456 | 0.003268 |
S | 215 | D215D | gaT | gaC | 1 | 1 | B.1.468 | 0.005714 |
S | 215 | D215D | gaT | gaC | 1 | 1 | B.1.470 | 0.001404 |
S | 215 | D215D | gaT | gaC | 1 | 1 | B.1.595 | 0.000261 |
S | 215 | D215D | gaT | gaC | 1 | 1 | B.1.630 | 0.005236 |
S | 215 | D215D | gaT | gaC | 1 | 1 | B.6.6 | 0.000889 |
S | 215 | D215D | gaT | gaC | 1 | 1 | C.37 | 0.000116 |
S | 215 | D215D | gaT | gaC | 1 | 1 | D.2 | 0.000075 |
S | 215 | D215D | gaT | gaC | 1 | 1 | N.4 | 0.004255 |
S | 215 | D215D | gaT | gaC | 1 | 1 | P.1.14 | 0.000048 |
S | 215 | D215D | gaT | gaC | 1 | 1 | P.1.15 | 0.000232 |
S | 215 | D215D | gaT | gaC | 1 | 1 | P.1.7 | 0.000319 |
S | 215 | D215D | gaT | gaC | 1 | 1 | P.2 | 0.000187 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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