CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 213 & Codon = gtT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S213V213VsyngtGgtT371635510.95559722199-22201

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S213V213VgtGgtT35513716All0.000679
S213V213VgtGgtT10991099B.1.5881
S213V213VgtGgtT244261B.1.1.70.000218
S213V213VgtGgtT186186W.40.251351
S213V213VgtGgtT175184B.1.617.20.000659
S213V213VgtGgtT160160B.1.36.240.987654
S213V213VgtGgtT148153AY.40.00023
S213V213VgtGgtT148149AY.7.10.01668
S213V213VgtGgtT9798AY.1030.000602
S213V213VgtGgtT8794AY.430.000385
S213V213VgtGgtT9191B.1.5760.082502
S213V213VgtGgtT8185B.10.000742
S213V213VgtGgtT7478AY.440.00045
S213V213VgtGgtT6366B.1.20.000555
S213V213VgtGgtT5557B.1.4290.001294
S213V213VgtGgtT5252B.1.5950.01357
S213V213VgtGgtT3939B.1.1390.028592
S213V213VgtGgtT3637AY.9.20.001322
S213V213VgtGgtT1736B.1.1770.000224
S213V213VgtGgtT3435B.1.5260.000799
S213V213VgtGgtT3233AY.4.20.000694
S213V213VgtGgtT2929B.1.6190.025261
S213V213VgtGgtT2626B.1.588.11
S213V213VgtGgtT1326P.10.000205
S213V213VgtGgtT2223B.1.3510.000654
S213V213VgtGgtT1920AY.390.00047
S213V213VgtGgtT220AY.98.10.000097
S213V213VgtGgtT1620B.1.10.00029
S213V213VgtGgtT1919AY.1180.00119
S213V213VgtGgtT1819AY.250.000108
S213V213VgtGgtT1818AY.1170.001521
S213V213VgtGgtT1818AY.230.001255
S213V213VgtGgtT1315AY.30.000129
S213V213VgtGgtT1515B.6.60.013333
S213V213VgtGgtT1314AY.46.60.000939
S213V213VgtGgtT1414B.1.1.3120.026769
S213V213VgtGgtT1212AY.3.10.001023
S213V213VgtGgtT1212B.1.1.5190.000477
S213V213VgtGgtT1212B.1.2580.000799
S213V213VgtGgtT1111AY.1020.000292
S213V213VgtGgtT811AY.260.000226
S213V213VgtGgtT911AY.50.000186
S213V213VgtGgtT1111B.1.1.4320.013924
S213V213VgtGgtT1111B.1.1600.000343
S213V213VgtGgtT111R.10.00009
S213V213VgtGgtT1010B.1.5670.033333
S213V213VgtGgtT99AY.1210.001218
S213V213VgtGgtT99B.1.258.170.000936
S213V213VgtGgtT88AY.1200.000297
S213V213VgtGgtT88B.1.617.10.001032
S213V213VgtGgtT77AY.200.000272
S213V213VgtGgtT57AY.90.000338
S213V213VgtGgtT77B.1.1.2320.012704
S213V213VgtGgtT67B.1.4270.000303
S213V213VgtGgtT66AY.840.002625
S213V213VgtGgtT66AY.9.10.000502
S213V213VgtGgtT66B.1.1.3320.1875
S213V213VgtGgtT66B.1.6210.000531
S213V213VgtGgtT55AY.1110.000916
S213V213VgtGgtT55B.1.1.3160.004625
S213V213VgtGgtT55B.1.3500.014663
S213V213VgtGgtT35D.20.000225
S213V213VgtGgtT44AY.1160.001147
S213V213VgtGgtT34AY.1190.000106
S213V213VgtGgtT44AY.360.000593
S213V213VgtGgtT44AY.370.001264
S213V213VgtGgtT34AY.610.000314
S213V213VgtGgtT44C.37.10.010471
S213V213VgtGgtT34P.1.140.000143
S213V213VgtGgtT33A0.001161
S213V213VgtGgtT33AY.1000.000138
S213V213VgtGgtT23AY.290.000032
S213V213VgtGgtT33AY.380.001498
S213V213VgtGgtT33AY.46.30.002801
S213V213VgtGgtT33AY.510.002727
S213V213VgtGgtT33AY.540.000286
S213V213VgtGgtT33AY.60.000123
S213V213VgtGgtT33AY.690.00056
S213V213VgtGgtT33B.1.1.2140.000166
S213V213VgtGgtT33B.1.1.2160.002671
S213V213VgtGgtT33B.1.2430.000209
S213V213VgtGgtT33B.1.3420.3
S213V213VgtGgtT33B.1.4710.008197
S213V213VgtGgtT33B.1.5650.002431
S213V213VgtGgtT33B.1.5960.000261
S213V213VgtGgtT33B.1.6340.010274
S213V213VgtGgtT33P.1.70.000958
S213V213VgtGgtT12AY.120.000316
S213V213VgtGgtT12AY.330.000067
S213V213VgtGgtT22AY.340.000194
S213V213VgtGgtT22AY.46.20.001271
S213V213VgtGgtT22AY.470.000062
S213V213VgtGgtT22AY.550.001835
S213V213VgtGgtT22AY.700.000417
S213V213VgtGgtT22AY.75.10.000361
S213V213VgtGgtT22AY.900.001369
S213V213VgtGgtT12B0.000128
S213V213VgtGgtT22B.1.1.3170.000823
S213V213VgtGgtT22B.1.1.3710.020833
S213V213VgtGgtT22B.1.1.3980.006452
S213V213VgtGgtT22B.1.177.530.004785
S213V213VgtGgtT22B.1.214.20.001199
S213V213VgtGgtT22B.1.36.100.009569
S213V213VgtGgtT22B.1.36.80.002
S213V213VgtGgtT22B.1.3910.002255
S213V213VgtGgtT22B.1.4740.003802
S213V213VgtGgtT22B.1.5230.004902
S213V213VgtGgtT22B.1.6370.000146
S213V213VgtGgtT22C.140.008658
S213V213VgtGgtT22C.370.000232
S213V213VgtGgtT12Q.30.000145
S213V213VgtGgtT11AD.20.000219
S213V213VgtGgtT11AY.10.000396
S213V213VgtGgtT11AY.1070.000466
S213V213VgtGgtT11AY.1130.000142
S213V213VgtGgtT11AY.1140.000231
S213V213VgtGgtT11AY.140.000088
S213V213VgtGgtT11AY.23.10.000417
S213V213VgtGgtT11AY.240.000431
S213V213VgtGgtT11AY.350.000233
S213V213VgtGgtT11AY.39.10.00004
S213V213VgtGgtT11AY.4.50.000107
S213V213VgtGgtT11AY.400.000964
S213V213VgtGgtT11AY.420.00004
S213V213VgtGgtT11AY.490.003195
S213V213VgtGgtT11AY.5.30.000337
S213V213VgtGgtT11AY.650.000533
S213V213VgtGgtT11AY.740.000116
S213V213VgtGgtT11AY.750.000056
S213V213VgtGgtT11AZ.20.000821
S213V213VgtGgtT11B.1.1.10.000327
S213V213VgtGgtT11B.1.1.2220.000204
S213V213VgtGgtT11B.1.1.2290.005747
S213V213VgtGgtT11B.1.1.2840.000107
S213V213VgtGgtT11B.1.1.2940.001266
S213V213VgtGgtT11B.1.1.3180.000302
S213V213VgtGgtT11B.1.1.3220.008772
S213V213VgtGgtT11B.1.1.330.000421
S213V213VgtGgtT11B.1.1.3890.006061
S213V213VgtGgtT11B.1.1.400.034483
S213V213VgtGgtT11B.1.1.4200.001006
S213V213VgtGgtT11B.1.1.700.000341
S213V213VgtGgtT11B.1.160.130.027778
S213V213VgtGgtT11B.1.177.730.000566
S213V213VgtGgtT11B.1.2140.003663
S213V213VgtGgtT11B.1.2210.000071
S213V213VgtGgtT11B.1.2230.002778
S213V213VgtGgtT11B.1.2400.000216
S213V213VgtGgtT11B.1.2410.000812
S213V213VgtGgtT11B.1.258.140.00098
S213V213VgtGgtT11B.1.2850.090909
S213V213VgtGgtT11B.1.3110.000275
S213V213VgtGgtT11B.1.351.50.0006
S213V213VgtGgtT11B.1.36.10.00114
S213V213VgtGgtT11B.1.36.260.002857
S213V213VgtGgtT11B.1.3750.00082
S213V213VgtGgtT11B.1.3890.001002
S213V213VgtGgtT11B.1.4000.000429
S213V213VgtGgtT11B.1.4110.003704
S213V213VgtGgtT11B.1.4780.011765
S213V213VgtGgtT11B.1.4990.00105
S213V213VgtGgtT11B.1.6090.000479
S213V213VgtGgtT11B.1.80.001972
S213V213VgtGgtT11B.4.10.018868
S213V213VgtGgtT11P.1.150.000232
S213V213VgtGgtT11P.1.17.10.000875
S213V213VgtGgtT11P.1.20.001156
S213V213VgtGgtT11P.20.000187
S213V213VgtGgtT11P.30.001595

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.