CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 212 | L212I | nonsyn | Tta | Ata | 732 | 732 | 1 | 22196-22198 | |
S | 212 | L212L | syn | Tta | Cta | 493 | 347 | 0.703854 | 22196-22198 | |
S | 212 | L212L | syn | ttA | ttG | 493 | 144 | 0.292089 | 22196-22198 | |
S | 212 | L212L | syn | TtA | CtG | 493 | 2 | 0.0040568 | 22196-22198 | |
S | 212 | L212del | del | TTA | --- | 197 | 197 | 1 | 22196-22198 | |
S | 212 | L212S | nonsyn | tTa | tCa | 158 | 149 | 0.943038 | 22196-22198 | |
S | 212 | L212S | nonsyn | tTA | tCG | 158 | 8 | 0.0506329 | 22196-22198 | |
S | 212 | L212S | nonsyn | tTA | tCC | 158 | 1 | 0.00632911 | 22196-22198 | |
S | 212 | L212V | nonsyn | Tta | Gta | 113 | 107 | 0.946903 | 22196-22198 | |
S | 212 | L212V | nonsyn | TtA | GtG | 113 | 5 | 0.0442478 | 22196-22198 | |
S | 212 | L212V | nonsyn | TtA | GtC | 113 | 1 | 0.00884956 | 22196-22198 | |
S | 212 | L212F | nonsyn | ttA | ttT | 38 | 37 | 0.973684 | 22196-22198 | |
S | 212 | L212F | nonsyn | ttA | ttC | 38 | 1 | 0.0263158 | 22196-22198 | |
S | 212 | L212A | nonsyn | TTA | GCG | 20 | 15 | 0.75 | 22196-22198 | |
S | 212 | L212A | nonsyn | TTa | GCa | 20 | 5 | 0.25 | 22196-22198 | |
S | 212 | L212X | nonsyn | tTa | tGa | 4 | 2 | 0.5 | 22196-22198 | |
S | 212 | L212X | nonsyn | tTa | tAa | 4 | 2 | 0.5 | 22196-22198 | |
S | 212 | L212P | nonsyn | TTa | CCa | 3 | 2 | 0.666667 | 22196-22198 | |
S | 212 | L212P | nonsyn | TTA | CCG | 3 | 1 | 0.333333 | 22196-22198 | |
S | 212 | L212Q | nonsyn | TTA | CAG | 2 | 2 | 1 | 22196-22198 | |
S | 212 | L212del2 | del | TTa | --a | 2 | 2 | 1 | 22196-22198 | |
S | 212 | L212del1 | del | ttA | tt- | 1 | 1 | 1 | 22196-22198 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 212 | L212I | Tta | Ata | 732 | 732 | All | 0.00014 |
S | 212 | L212L | Tta | Cta | 347 | 493 | All | 0.000066 |
S | 212 | L212L | ttA | ttG | 144 | 493 | All | 0.000028 |
S | 212 | L212L | TtA | CtG | 2 | 493 | All | 0 |
S | 212 | L212I | Tta | Ata | 301 | 301 | AY.111 | 0.055128 |
S | 212 | L212L | Tta | Cta | 264 | 265 | B.1.258.17 | 0.027449 |
S | 212 | L212L | ttA | ttG | 1 | 265 | B.1.258.17 | 0.000104 |
S | 212 | L212del | TTA | --- | 197 | 197 | All | 0.000038 |
S | 212 | L212S | tTa | tCa | 149 | 158 | All | 0.000028 |
S | 212 | L212S | tTA | tCG | 8 | 158 | All | 0.000002 |
S | 212 | L212S | tTA | tCC | 1 | 158 | All | 0 |
S | 212 | L212V | Tta | Gta | 107 | 113 | All | 0.00002 |
S | 212 | L212V | TtA | GtG | 5 | 113 | All | 0.000001 |
S | 212 | L212V | TtA | GtC | 1 | 113 | All | 0 |
S | 212 | L212I | Tta | Ata | 97 | 97 | A.29 | 0.515957 |
S | 212 | L212L | ttA | ttG | 90 | 93 | B.1.1.7 | 0.000081 |
S | 212 | L212L | Tta | Cta | 3 | 93 | B.1.1.7 | 0.000003 |
S | 212 | L212I | Tta | Ata | 69 | 69 | AY.4 | 0.000107 |
S | 212 | L212del | TTA | --- | 44 | 44 | B.1.1.7 | 0.000039 |
S | 212 | L212I | Tta | Ata | 39 | 39 | B.1.1.7 | 0.000035 |
S | 212 | L212F | ttA | ttT | 37 | 38 | All | 0.000007 |
S | 212 | L212F | ttA | ttC | 1 | 38 | All | 0 |
S | 212 | L212I | Tta | Ata | 30 | 30 | N.10 | 0.882353 |
S | 212 | L212S | tTa | tCa | 28 | 28 | AY.44 | 0.00017 |
S | 212 | L212I | Tta | Ata | 28 | 28 | B.1.617.2 | 0.000105 |
S | 212 | L212V | Tta | Gta | 24 | 24 | B.1.617.2 | 0.00009 |
S | 212 | L212L | Tta | Cta | 16 | 22 | B.1.177 | 0.000211 |
S | 212 | L212L | ttA | ttG | 6 | 22 | B.1.177 | 0.000079 |
S | 212 | L212A | TTA | GCG | 15 | 20 | All | 0.000003 |
S | 212 | L212A | TTa | GCa | 5 | 20 | All | 0.000001 |
S | 212 | L212S | tTa | tCa | 17 | 17 | AY.4 | 0.000026 |
S | 212 | L212V | Tta | Gta | 15 | 15 | AY.43 | 0.000066 |
S | 212 | L212S | tTa | tCa | 14 | 14 | AY.39.1 | 0.000555 |
S | 212 | L212del | TTA | --- | 14 | 14 | AY.43 | 0.000062 |
S | 212 | L212V | Tta | Gta | 13 | 13 | B.1.429 | 0.000306 |
S | 212 | L212L | Tta | Cta | 6 | 12 | AY.44 | 0.000037 |
S | 212 | L212L | ttA | ttG | 6 | 12 | AY.44 | 0.000037 |
S | 212 | L212S | tTa | tCa | 12 | 12 | B.1.1.7 | 0.000011 |
S | 212 | L212del | TTA | --- | 11 | 11 | B.1 | 0.000101 |
S | 212 | L212V | Tta | Gta | 11 | 11 | B.1.1.28 | 0.003424 |
S | 212 | L212F | ttA | ttT | 11 | 11 | B.1.1.7 | 0.00001 |
S | 212 | L212I | Tta | Ata | 10 | 10 | AY.26 | 0.000283 |
S | 212 | L212L | Tta | Cta | 5 | 9 | AY.4 | 0.000008 |
S | 212 | L212L | ttA | ttG | 4 | 9 | AY.4 | 0.000006 |
S | 212 | L212L | Tta | Cta | 9 | 9 | AY.43 | 0.00004 |
S | 212 | L212I | Tta | Ata | 9 | 9 | AY.54 | 0.000858 |
S | 212 | L212S | tTa | tCa | 9 | 9 | B.1.617.2 | 0.000034 |
S | 212 | L212I | Tta | Ata | 8 | 8 | AY.3 | 0.00008 |
S | 212 | L212I | Tta | Ata | 8 | 8 | AY.32 | 0.00426 |
S | 212 | L212del | TTA | --- | 8 | 8 | AY.4 | 0.000012 |
S | 212 | L212F | ttA | ttT | 8 | 8 | AY.4 | 0.000012 |
S | 212 | L212del | TTA | --- | 8 | 8 | B.1.177 | 0.000105 |
S | 212 | L212S | tTa | tCa | 8 | 8 | B.1.351 | 0.000238 |
S | 212 | L212del | TTA | --- | 8 | 8 | B.1.617.2 | 0.00003 |
S | 212 | L212del | TTA | --- | 8 | 8 | P.1 | 0.000126 |
S | 212 | L212del | TTA | --- | 8 | 8 | P.1.15 | 0.001859 |
S | 212 | L212A | TTA | GCG | 7 | 7 | A.2.5 | 0.003493 |
S | 212 | L212A | TTA | GCG | 5 | 7 | A.2.5.1 | 0.024038 |
S | 212 | L212A | TTa | GCa | 2 | 7 | A.2.5.1 | 0.009615 |
S | 212 | L212I | Tta | Ata | 7 | 7 | AY.103 | 0.000043 |
S | 212 | L212del | TTA | --- | 7 | 7 | AY.4.5 | 0.000752 |
S | 212 | L212L | Tta | Cta | 5 | 7 | B.1 | 0.000046 |
S | 212 | L212L | ttA | ttG | 2 | 7 | B.1 | 0.000018 |
S | 212 | L212S | tTA | tCG | 3 | 6 | A.2.5.2 | 0.004717 |
S | 212 | L212V | Tta | Gta | 3 | 6 | A.2.5.2 | 0.004717 |
S | 212 | L212A | TTA | GCG | 3 | 6 | A.2.5.2 | 0.004717 |
S | 212 | L212A | TTa | GCa | 3 | 6 | A.2.5.2 | 0.004717 |
S | 212 | L212V | TtA | GtG | 3 | 6 | A.2.5.2 | 0.004717 |
S | 212 | L212S | tTa | tCa | 3 | 6 | A.2.5.2 | 0.004717 |
S | 212 | L212L | Tta | Cta | 6 | 6 | AY.29 | 0.000095 |
S | 212 | L212I | Tta | Ata | 6 | 6 | AY.9.2 | 0.00022 |
S | 212 | L212V | Tta | Gta | 6 | 6 | B.1.1.7 | 0.000005 |
S | 212 | L212I | Tta | Ata | 6 | 6 | B.1.160 | 0.000187 |
S | 212 | L212I | Tta | Ata | 6 | 6 | B.1.234 | 0.000792 |
S | 212 | L212S | tTa | tCa | 6 | 6 | B.1.429 | 0.000141 |
S | 212 | L212I | Tta | Ata | 6 | 6 | B.1.621 | 0.000531 |
S | 212 | L212del | TTA | --- | 6 | 6 | C.37 | 0.000696 |
S | 212 | L212L | ttA | ttG | 3 | 5 | A.2.5.2 | 0.004717 |
S | 212 | L212L | TtA | CtG | 1 | 5 | A.2.5.2 | 0.001572 |
S | 212 | L212L | Tta | Cta | 1 | 5 | A.2.5.2 | 0.001572 |
S | 212 | L212I | Tta | Ata | 5 | 5 | AY.20 | 0.000194 |
S | 212 | L212S | tTa | tCa | 5 | 5 | AY.3.1 | 0.000426 |
S | 212 | L212I | Tta | Ata | 5 | 5 | AY.4.5 | 0.000537 |
S | 212 | L212I | Tta | Ata | 5 | 5 | AY.43 | 0.000022 |
S | 212 | L212I | Tta | Ata | 5 | 5 | B.1 | 0.000046 |
S | 212 | L212I | Tta | Ata | 5 | 5 | B.1.243 | 0.000348 |
S | 212 | L212L | Tta | Cta | 5 | 5 | B.1.617.2 | 0.000019 |
S | 212 | L212I | Tta | Ata | 4 | 4 | A.2.5 | 0.001996 |
S | 212 | L212S | tTa | tCa | 2 | 4 | A.2.5.1 | 0.009615 |
S | 212 | L212V | TtA | GtG | 2 | 4 | A.2.5.1 | 0.009615 |
S | 212 | L212S | tTA | tCG | 2 | 4 | A.2.5.1 | 0.009615 |
S | 212 | L212V | Tta | Gta | 2 | 4 | A.2.5.1 | 0.009615 |
S | 212 | L212X | tTa | tGa | 2 | 4 | All | 0 |
S | 212 | L212X | tTa | tAa | 2 | 4 | All | 0 |
S | 212 | L212del | TTA | --- | 4 | 4 | AY.120 | 0.000149 |
S | 212 | L212del | TTA | --- | 4 | 4 | AY.26 | 0.000113 |
S | 212 | L212I | Tta | Ata | 4 | 4 | AY.3.1 | 0.000341 |
S | 212 | L212I | Tta | Ata | 4 | 4 | AY.4.2.1 | 0.000596 |
S | 212 | L212I | Tta | Ata | 4 | 4 | AY.6 | 0.000165 |
S | 212 | L212S | tTa | tCa | 4 | 4 | AY.85 | 0.001709 |
S | 212 | L212I | Tta | Ata | 4 | 4 | AY.98.1 | 0.000194 |
S | 212 | L212S | tTa | tCa | 4 | 4 | B.1.1.10 | 0.004459 |
S | 212 | L212S | tTA | tCG | 3 | 3 | A.2.5 | 0.001497 |
S | 212 | L212L | ttA | ttG | 3 | 3 | A.2.5.1 | 0.014423 |
S | 212 | L212P | TTa | CCa | 2 | 3 | All | 0 |
S | 212 | L212P | TTA | CCG | 1 | 3 | All | 0 |
S | 212 | L212del | TTA | --- | 3 | 3 | AY.100 | 0.000138 |
S | 212 | L212V | Tta | Gta | 3 | 3 | AY.103 | 0.000019 |
S | 212 | L212L | ttA | ttG | 2 | 3 | AY.103 | 0.000012 |
S | 212 | L212L | Tta | Cta | 1 | 3 | AY.103 | 0.000006 |
S | 212 | L212del | TTA | --- | 3 | 3 | AY.3 | 0.00003 |
S | 212 | L212L | Tta | Cta | 3 | 3 | AY.33 | 0.0002 |
S | 212 | L212F | ttA | ttT | 3 | 3 | AY.4.5 | 0.000322 |
S | 212 | L212I | Tta | Ata | 3 | 3 | AY.44 | 0.000018 |
S | 212 | L212del | TTA | --- | 3 | 3 | AY.44 | 0.000018 |
S | 212 | L212I | Tta | Ata | 3 | 3 | AY.47 | 0.000093 |
S | 212 | L212L | ttA | ttG | 3 | 3 | AY.61 | 0.000314 |
S | 212 | L212I | Tta | Ata | 3 | 3 | AY.71 | 0.001425 |
S | 212 | L212I | Tta | Ata | 3 | 3 | B.1.1 | 0.000054 |
S | 212 | L212L | ttA | ttG | 2 | 3 | B.1.1 | 0.000036 |
S | 212 | L212L | Tta | Cta | 1 | 3 | B.1.1 | 0.000018 |
S | 212 | L212S | tTa | tCa | 3 | 3 | B.1.1.189 | 0.004539 |
S | 212 | L212S | tTa | tCa | 3 | 3 | B.1.221 | 0.000213 |
S | 212 | L212V | Tta | Gta | 3 | 3 | B.1.243 | 0.000209 |
S | 212 | L212del | TTA | --- | 3 | 3 | B.1.351 | 0.000089 |
S | 212 | L212L | Tta | Cta | 3 | 3 | B.1.36 | 0.000438 |
S | 212 | L212S | tTa | tCa | 3 | 3 | B.1.36 | 0.000438 |
S | 212 | L212S | tTa | tCa | 2 | 2 | 0.111111 | |
S | 212 | L212X | tTa | tGa | 2 | 2 | 0.111111 | |
S | 212 | L212I | Tta | Ata | 2 | 2 | A | 0.000774 |
S | 212 | L212P | TTA | CCG | 1 | 2 | A.2.5.2 | 0.001572 |
S | 212 | L212P | TTa | CCa | 1 | 2 | A.2.5.2 | 0.001572 |
S | 212 | L212Q | TTA | CAG | 2 | 2 | All | 0 |
S | 212 | L212del2 | TTa | --a | 2 | 2 | All | 0 |
S | 212 | L212V | Tta | Gta | 2 | 2 | AY.1 | 0.000791 |
S | 212 | L212I | Tta | Ata | 2 | 2 | AY.105 | 0.001286 |
S | 212 | L212I | Tta | Ata | 2 | 2 | AY.23 | 0.000139 |
S | 212 | L212del | TTA | --- | 2 | 2 | AY.25 | 0.000012 |
S | 212 | L212L | ttA | ttG | 2 | 2 | AY.27 | 0.000129 |
S | 212 | L212I | Tta | Ata | 2 | 2 | AY.39 | 0.000049 |
S | 212 | L212S | tTa | tCa | 2 | 2 | AY.39 | 0.000049 |
S | 212 | L212V | Tta | Gta | 2 | 2 | AY.41 | 0.000588 |
S | 212 | L212V | Tta | Gta | 2 | 2 | AY.45 | 0.000243 |
S | 212 | L212S | tTa | tCa | 2 | 2 | AY.46 | 0.000208 |
S | 212 | L212F | ttA | ttT | 2 | 2 | AY.61 | 0.00021 |
S | 212 | L212L | ttA | ttG | 2 | 2 | AY.74 | 0.000231 |
S | 212 | L212I | Tta | Ata | 2 | 2 | AY.85 | 0.000854 |
S | 212 | L212L | ttA | ttG | 2 | 2 | AY.9.2 | 0.000073 |
S | 212 | L212del | TTA | --- | 2 | 2 | AY.95 | 0.001522 |
S | 212 | L212del | TTA | --- | 2 | 2 | B.1.1 | 0.000036 |
S | 212 | L212L | ttA | ttG | 2 | 2 | B.1.1.369 | 0.000892 |
S | 212 | L212del | TTA | --- | 2 | 2 | B.1.1.37 | 0.000386 |
S | 212 | L212I | Tta | Ata | 2 | 2 | B.1.177.52 | 0.003515 |
S | 212 | L212L | Tta | Cta | 1 | 2 | B.1.2 | 0.000009 |
S | 212 | L212L | ttA | ttG | 1 | 2 | B.1.2 | 0.000009 |
S | 212 | L212S | tTa | tCa | 2 | 2 | B.1.241 | 0.001623 |
S | 212 | L212L | Tta | Cta | 2 | 2 | B.1.258 | 0.000133 |
S | 212 | L212I | Tta | Ata | 2 | 2 | B.1.575 | 0.000607 |
S | 212 | L212S | tTa | tCa | 2 | 2 | B.1.617.1 | 0.000258 |
S | 212 | L212I | Tta | Ata | 2 | 2 | C.11 | 0.021277 |
S | 212 | L212V | Tta | Gta | 2 | 2 | C.36.3 | 0.001134 |
S | 212 | L212L | ttA | ttG | 2 | 2 | P.1 | 0.000032 |
S | 212 | L212S | tTa | tCa | 2 | 2 | P.1 | 0.000032 |
S | 212 | L212F | ttA | ttC | 1 | 2 | P.1 | 0.000016 |
S | 212 | L212F | ttA | ttT | 1 | 2 | P.1 | 0.000016 |
S | 212 | L212S | tTa | tCa | 1 | 1 | A.1 | 0.000282 |
S | 212 | L212I | Tta | Ata | 1 | 1 | A.2 | 0.000662 |
S | 212 | L212del | TTA | --- | 1 | 1 | A.2.5 | 0.000499 |
S | 212 | L212del | TTA | --- | 1 | 1 | AA.1 | 0.007246 |
S | 212 | L212del1 | ttA | tt- | 1 | 1 | All | 0 |
S | 212 | L212I | Tta | Ata | 1 | 1 | AY.102 | 0.000027 |
S | 212 | L212S | tTa | tCa | 1 | 1 | AY.102 | 0.000027 |
S | 212 | L212del | TTA | --- | 1 | 1 | AY.102 | 0.000027 |
S | 212 | L212L | ttA | ttG | 1 | 1 | AY.102 | 0.000027 |
S | 212 | L212F | ttA | ttT | 1 | 1 | AY.102 | 0.000027 |
S | 212 | L212S | tTa | tCa | 1 | 1 | AY.103 | 0.000006 |
S | 212 | L212X | tTa | tAa | 1 | 1 | AY.103 | 0.000006 |
S | 212 | L212L | Tta | Cta | 1 | 1 | AY.110 | 0.000113 |
S | 212 | L212L | ttA | ttG | 1 | 1 | AY.118 | 0.000063 |
S | 212 | L212del | TTA | --- | 1 | 1 | AY.119 | 0.000035 |
S | 212 | L212I | Tta | Ata | 1 | 1 | AY.119 | 0.000035 |
S | 212 | L212V | Tta | Gta | 1 | 1 | AY.120 | 0.000037 |
S | 212 | L212F | ttA | ttT | 1 | 1 | AY.120 | 0.000037 |
S | 212 | L212S | tTa | tCa | 1 | 1 | AY.16.1 | 0.00047 |
S | 212 | L212del | TTA | --- | 1 | 1 | AY.20 | 0.000039 |
S | 212 | L212S | tTa | tCa | 1 | 1 | AY.23 | 0.00007 |
S | 212 | L212del | TTA | --- | 1 | 1 | AY.24 | 0.000431 |
S | 212 | L212I | Tta | Ata | 1 | 1 | AY.24 | 0.000431 |
S | 212 | L212V | Tta | Gta | 1 | 1 | AY.24 | 0.000431 |
S | 212 | L212F | ttA | ttT | 1 | 1 | AY.25 | 0.000006 |
S | 212 | L212I | Tta | Ata | 1 | 1 | AY.25 | 0.000006 |
S | 212 | L212L | Tta | Cta | 1 | 1 | AY.25 | 0.000006 |
S | 212 | L212V | Tta | Gta | 1 | 1 | AY.25 | 0.000006 |
S | 212 | L212S | tTa | tCa | 1 | 1 | AY.26 | 0.000028 |
S | 212 | L212del | TTA | --- | 1 | 1 | AY.27 | 0.000065 |
S | 212 | L212del | TTA | --- | 1 | 1 | AY.29 | 0.000016 |
S | 212 | L212L | Tta | Cta | 1 | 1 | AY.3 | 0.00001 |
S | 212 | L212del | TTA | --- | 1 | 1 | AY.30 | 0.000396 |
S | 212 | L212L | Tta | Cta | 1 | 1 | AY.32 | 0.000532 |
S | 212 | L212V | Tta | Gta | 1 | 1 | AY.33 | 0.000067 |
S | 212 | L212V | Tta | Gta | 1 | 1 | AY.34 | 0.000097 |
S | 212 | L212L | Tta | Cta | 1 | 1 | AY.36 | 0.000148 |
S | 212 | L212I | Tta | Ata | 1 | 1 | AY.38 | 0.000499 |
S | 212 | L212L | ttA | ttG | 1 | 1 | AY.39 | 0.000025 |
S | 212 | L212I | Tta | Ata | 1 | 1 | AY.39.1 | 0.00004 |
S | 212 | L212del2 | TTa | --a | 1 | 1 | AY.4 | 0.000002 |
S | 212 | L212V | Tta | Gta | 1 | 1 | AY.4 | 0.000002 |
S | 212 | L212del | TTA | --- | 1 | 1 | AY.4.2 | 0.000022 |
S | 212 | L212I | Tta | Ata | 1 | 1 | AY.4.2 | 0.000022 |
S | 212 | L212L | Tta | Cta | 1 | 1 | AY.4.2 | 0.000022 |
S | 212 | L212S | tTa | tCa | 1 | 1 | AY.42 | 0.00004 |
S | 212 | L212I | Tta | Ata | 1 | 1 | AY.42 | 0.00004 |
S | 212 | L212V | Tta | Gta | 1 | 1 | AY.42 | 0.00004 |
S | 212 | L212Q | TTA | CAG | 1 | 1 | AY.43 | 0.000004 |
S | 212 | L212S | tTA | tCC | 1 | 1 | AY.43 | 0.000004 |
S | 212 | L212P | TTa | CCa | 1 | 1 | AY.43 | 0.000004 |
S | 212 | L212del | TTA | --- | 1 | 1 | AY.46.2 | 0.000635 |
S | 212 | L212I | Tta | Ata | 1 | 1 | AY.46.4 | 0.000165 |
S | 212 | L212del | TTA | --- | 1 | 1 | AY.46.6 | 0.000072 |
S | 212 | L212S | tTa | tCa | 1 | 1 | AY.46.6 | 0.000072 |
S | 212 | L212del | TTA | --- | 1 | 1 | AY.47 | 0.000031 |
S | 212 | L212L | Tta | Cta | 1 | 1 | AY.47 | 0.000031 |
S | 212 | L212L | Tta | Cta | 1 | 1 | AY.48 | 0.000465 |
S | 212 | L212V | Tta | Gta | 1 | 1 | AY.5 | 0.000021 |
S | 212 | L212L | ttA | ttG | 1 | 1 | AY.5 | 0.000021 |
S | 212 | L212S | tTa | tCa | 1 | 1 | AY.5.3 | 0.000337 |
S | 212 | L212I | Tta | Ata | 1 | 1 | AY.53 | 0.000288 |
S | 212 | L212S | tTa | tCa | 1 | 1 | AY.59 | 0.00053 |
S | 212 | L212L | Tta | Cta | 1 | 1 | AY.59 | 0.00053 |
S | 212 | L212I | Tta | Ata | 1 | 1 | AY.61 | 0.000105 |
S | 212 | L212del | TTA | --- | 1 | 1 | AY.61 | 0.000105 |
S | 212 | L212L | Tta | Cta | 1 | 1 | AY.63 | 0.000387 |
S | 212 | L212L | ttA | ttG | 1 | 1 | AY.68 | 0.000274 |
S | 212 | L212L | Tta | Cta | 1 | 1 | AY.69 | 0.000187 |
S | 212 | L212V | Tta | Gta | 1 | 1 | AY.69 | 0.000187 |
S | 212 | L212F | ttA | ttT | 1 | 1 | AY.69 | 0.000187 |
S | 212 | L212S | tTa | tCa | 1 | 1 | AY.69 | 0.000187 |
S | 212 | L212I | Tta | Ata | 1 | 1 | AY.7 | 0.000196 |
S | 212 | L212V | Tta | Gta | 1 | 1 | AY.70 | 0.000209 |
S | 212 | L212F | ttA | ttT | 1 | 1 | AY.8 | 0.000606 |
S | 212 | L212F | ttA | ttT | 1 | 1 | AY.87 | 0.000833 |
S | 212 | L212I | Tta | Ata | 1 | 1 | AY.87 | 0.000833 |
S | 212 | L212F | ttA | ttT | 1 | 1 | AY.9 | 0.000068 |
S | 212 | L212V | Tta | Gta | 1 | 1 | AY.9.2 | 0.000037 |
S | 212 | L212V | Tta | Gta | 1 | 1 | AY.91 | 0.00073 |
S | 212 | L212V | Tta | Gta | 1 | 1 | AY.91.1 | 0.004065 |
S | 212 | L212del | TTA | --- | 1 | 1 | AY.96 | 0.002075 |
S | 212 | L212del | TTA | --- | 1 | 1 | AY.98 | 0.000079 |
S | 212 | L212V | Tta | Gta | 1 | 1 | AY.98.1 | 0.000048 |
S | 212 | L212Q | TTA | CAG | 1 | 1 | AY.98.1 | 0.000048 |
S | 212 | L212del | TTA | --- | 1 | 1 | AY.99.1 | 0.001553 |
S | 212 | L212I | Tta | Ata | 1 | 1 | AY.99.2 | 0.000092 |
S | 212 | L212L | ttA | ttG | 1 | 1 | AZ.1 | 0.000867 |
S | 212 | L212I | Tta | Ata | 1 | 1 | AZ.2 | 0.000821 |
S | 212 | L212del | TTA | --- | 1 | 1 | B | 0.000128 |
S | 212 | L212L | ttA | ttG | 1 | 1 | B | 0.000128 |
S | 212 | L212I | Tta | Ata | 1 | 1 | B | 0.000128 |
S | 212 | L212V | TtA | GtC | 1 | 1 | B.1 | 0.000009 |
S | 212 | L212X | tTa | tAa | 1 | 1 | B.1.1 | 0.000018 |
S | 212 | L212del2 | TTa | --a | 1 | 1 | B.1.1 | 0.000018 |
S | 212 | L212del | TTA | --- | 1 | 1 | B.1.1.1 | 0.000327 |
S | 212 | L212L | Tta | Cta | 1 | 1 | B.1.1.176 | 0.000439 |
S | 212 | L212I | Tta | Ata | 1 | 1 | B.1.1.214 | 0.000055 |
S | 212 | L212L | Tta | Cta | 1 | 1 | B.1.1.216 | 0.00089 |
S | 212 | L212V | Tta | Gta | 1 | 1 | B.1.1.220 | 0.001859 |
S | 212 | L212I | Tta | Ata | 1 | 1 | B.1.1.274 | 0.005051 |
S | 212 | L212F | ttA | ttT | 1 | 1 | B.1.1.277 | 0.000759 |
S | 212 | L212del | TTA | --- | 1 | 1 | B.1.1.315 | 0.008475 |
S | 212 | L212V | Tta | Gta | 1 | 1 | B.1.1.317 | 0.000412 |
S | 212 | L212I | Tta | Ata | 1 | 1 | B.1.1.33 | 0.000421 |
S | 212 | L212del | TTA | --- | 1 | 1 | B.1.1.33 | 0.000421 |
S | 212 | L212del | TTA | --- | 1 | 1 | B.1.1.39 | 0.00051 |
S | 212 | L212I | Tta | Ata | 1 | 1 | B.1.1.398 | 0.003226 |
S | 212 | L212I | Tta | Ata | 1 | 1 | B.1.1.519 | 0.00004 |
S | 212 | L212del | TTA | --- | 1 | 1 | B.1.1.70 | 0.000341 |
S | 212 | L212del | TTA | --- | 1 | 1 | B.1.140 | 0.018868 |
S | 212 | L212L | Tta | Cta | 1 | 1 | B.1.160 | 0.000031 |
S | 212 | L212del | TTA | --- | 1 | 1 | B.1.160.23 | 0.004831 |
S | 212 | L212S | tTa | tCa | 1 | 1 | B.1.177 | 0.000013 |
S | 212 | L212del | TTA | --- | 1 | 1 | B.1.177.16 | 0.000664 |
S | 212 | L212del | TTA | --- | 1 | 1 | B.1.177.18 | 0.00116 |
S | 212 | L212del | TTA | --- | 1 | 1 | B.1.177.6 | 0.000977 |
S | 212 | L212del | TTA | --- | 1 | 1 | B.1.177.62 | 0.001192 |
S | 212 | L212del | TTA | --- | 1 | 1 | B.1.177.69 | 0.001484 |
S | 212 | L212del | TTA | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 212 | L212I | Tta | Ata | 1 | 1 | B.1.2 | 0.000009 |
S | 212 | L212S | tTa | tCa | 1 | 1 | B.1.2 | 0.000009 |
S | 212 | L212del | TTA | --- | 1 | 1 | B.1.218 | 0.005155 |
S | 212 | L212S | tTa | tCa | 1 | 1 | B.1.243 | 0.00007 |
S | 212 | L212del | TTA | --- | 1 | 1 | B.1.258 | 0.000067 |
S | 212 | L212I | Tta | Ata | 1 | 1 | B.1.258 | 0.000067 |
S | 212 | L212V | Tta | Gta | 1 | 1 | B.1.351 | 0.00003 |
S | 212 | L212del | TTA | --- | 1 | 1 | B.1.351.2 | 0.000303 |
S | 212 | L212S | tTa | tCa | 1 | 1 | B.1.351.3 | 0.000876 |
S | 212 | L212V | Tta | Gta | 1 | 1 | B.1.36 | 0.000146 |
S | 212 | L212del | TTA | --- | 1 | 1 | B.1.36.18 | 0.00042 |
S | 212 | L212F | ttA | ttT | 1 | 1 | B.1.391 | 0.001127 |
S | 212 | L212del | TTA | --- | 1 | 1 | B.1.409 | 0.000781 |
S | 212 | L212L | Tta | Cta | 1 | 1 | B.1.426 | 0.001009 |
S | 212 | L212del | TTA | --- | 1 | 1 | B.1.466.2 | 0.000391 |
S | 212 | L212del | TTA | --- | 1 | 1 | B.1.517 | 0.000427 |
S | 212 | L212del | TTA | --- | 1 | 1 | B.1.561 | 0.000397 |
S | 212 | L212S | tTa | tCa | 1 | 1 | B.1.587 | 0.001898 |
S | 212 | L212L | Tta | Cta | 1 | 1 | B.1.595 | 0.000261 |
S | 212 | L212F | ttA | ttT | 1 | 1 | B.1.596 | 0.000087 |
S | 212 | L212L | ttA | ttG | 1 | 1 | B.1.596 | 0.000087 |
S | 212 | L212del | TTA | --- | 1 | 1 | B.1.599 | 0.00365 |
S | 212 | L212del | TTA | --- | 1 | 1 | B.1.617.1 | 0.000129 |
S | 212 | L212F | ttA | ttT | 1 | 1 | B.1.617.2 | 0.000004 |
S | 212 | L212del | TTA | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 212 | L212del | TTA | --- | 1 | 1 | B.1.621 | 0.000089 |
S | 212 | L212L | ttA | ttG | 1 | 1 | B.1.621 | 0.000089 |
S | 212 | L212I | Tta | Ata | 1 | 1 | B.1.621.1 | 0.000506 |
S | 212 | L212L | TtA | CtG | 1 | 1 | B.1.630 | 0.005236 |
S | 212 | L212del | TTA | --- | 1 | 1 | B.1.630 | 0.005236 |
S | 212 | L212I | Tta | Ata | 1 | 1 | B.1.637 | 0.000073 |
S | 212 | L212del | TTA | --- | 1 | 1 | B.1.638 | 0.052632 |
S | 212 | L212L | ttA | ttG | 1 | 1 | B.6.6 | 0.000889 |
S | 212 | L212I | Tta | Ata | 1 | 1 | C.1.2 | 0.004255 |
S | 212 | L212L | ttA | ttG | 1 | 1 | D.2 | 0.000075 |
S | 212 | L212F | ttA | ttT | 1 | 1 | D.2 | 0.000075 |
S | 212 | L212I | Tta | Ata | 1 | 1 | P.1 | 0.000016 |
S | 212 | L212V | Tta | Gta | 1 | 1 | P.1 | 0.000016 |
S | 212 | L212del | TTA | --- | 1 | 1 | P.1.1 | 0.000318 |
S | 212 | L212del1 | ttA | tt- | 1 | 1 | P.1.15 | 0.000232 |
S | 212 | L212I | Tta | Ata | 1 | 1 | P.1.7 | 0.000319 |
S | 212 | L212del | TTA | --- | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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