CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 211

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S211N211deldelAAT---917917122193-22195
S211N211NsynaaTaaC515515122193-22195
S211N211DnonsynAatGat337337122193-22195
S211N211KnonsynaaTaaG2562100.82031222193-22195
S211N211KnonsynaaTaaA256460.17968822193-22195
S211N211YnonsynAatTat173173122193-22195
S211N211SnonsynaAtaGt1061040.98113222193-22195
S211N211SnonsynaATaGC10610.0094339622193-22195
S211N211SnonsynAATTCC10610.0094339622193-22195
S211N211InonsynaAtaTt6565122193-22195
S211N211EnonsynAaTGaA3333122193-22195
S211N211TnonsynaAtaCt29270.93103522193-22195
S211N211TnonsynaATaCA2910.034482822193-22195
S211N211TnonsynaATaCC2910.034482822193-22195
S211N211HnonsynAatCat2020122193-22195
S211N211del1delaaTaa-1270.58333322193-22195
S211N211del1delAat-at1220.16666722193-22195
S211N211del1delAAt-Gt1220.16666722193-22195
S211N211del1delAaT-aN1210.083333322193-22195
S211N211RnonsynAAtCGt1010122193-22195
S211N211del2delaATa--530.622193-22195
S211N211del2delAAt--t520.422193-22195
S211N211GnonsynAAtGGt22122193-22195
S211N211FnonsynAAtTTt11122193-22195
S211N211CnonsynAATTGC11122193-22195
S211N211VnonsynAAtGTt11122193-22195
S211N211XnonsynAaTTaA11122193-22195
S211N211LnonsynAAtCTt11122193-22195

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S211N211delAAT---917917All0.000175
S211N211NaaTaaC515515All0.000098
S211N211DAatGat337337All0.000064
S211N211delAAT---301301AY.1110.055128
S211N211DAatGat258258B.1.1.5190.010245
S211N211KaaTaaG210256All0.00004
S211N211KaaTaaA46256All0.000009
S211N211YAatTat173173All0.000033
S211N211NaaTaaC123123B.1.1.70.00011
S211N211SaAtaGt104106All0.00002
S211N211SaATaGC1106All0
S211N211SAATTCC1106All0
S211N211delAAT---9797A.290.515957
S211N211NaaTaaC9292AY.40.000143
S211N211delAAT---8080B.1.1.70.000072
S211N211delAAT---7171AY.40.000111
S211N211KaaTaaG7070AY.680.019162
S211N211IaAtaTt6565All0.000012
S211N211YAatTat6565AY.270.004207
S211N211NaaTaaC6363P.10.000993
S211N211NaaTaaC5151AY.440.00031
S211N211KaaTaaG5050B.1.1.5230.078125
S211N211DAatGat4444B.1.1.70.000039
S211N211NaaTaaC4040AY.30.000398
S211N211EAaTGaA3333All0.000006
S211N211KaaTaaA3333AY.1030.000205
S211N211EAaTGaA3333AY.40.000051
S211N211delAAT---3333B.1.617.20.000124
S211N211delAAT---3030N.100.882353
S211N211TaAtaCt2729All0.000005
S211N211TaATaCA129All0
S211N211TaATaCC129All0
S211N211KaaTaaG2222B.1.1.70.00002
S211N211IaAtaTt2222B.1.617.20.000083
S211N211HAatCat2020All0.000004
S211N211YAatTat2020AY.39.10.000792
S211N211KaaTaaG2020B.1.1.2220.00408
S211N211delAAT---1919AY.30.000189
S211N211YAatTat1818AY.1170.001521
S211N211delAAT---1818AY.430.00008
S211N211delAAT---1616B.10.000147
S211N211YAatTat1616B.1.1.70.000014
S211N211IaAtaTt1515AY.440.000091
S211N211delAAT---1414AY.260.000396
S211N211NaaTaaC1414B.1.20.000123
S211N211SaAtaGt1414B.1.214.20.008393
S211N211del1aaTaa-712All0.000001
S211N211del1AAt-Gt212All0
S211N211del1Aat-at212All0
S211N211del1AaT-aN112All0
S211N211delAAT---1212AY.4.50.00129
S211N211YAatTat1212B.1.1.1750.923077
S211N211YAatTat1212B.1.4270.000606
S211N211RAAtCGt1010All0.000002
S211N211NaaTaaC99AY.1030.000056
S211N211SaAtaGt79AY.430.000031
S211N211SAATTCC19AY.430.000004
S211N211SaATaGC19AY.430.000004
S211N211delAAT---99AY.540.000858
S211N211NaaTaaC99B.10.000082
S211N211delAAT---88AY.1030.00005
S211N211YAatTat88AY.30.00008
S211N211delAAT---88AY.320.00426
S211N211KaaTaaG88B.10.000073
S211N211delAAT---88B.1.1770.000105
S211N211NaaTaaC88B.1.4290.000188
S211N211KaaTaaG78B.1.617.20.000026
S211N211KaaTaaA18B.1.617.20.000004
S211N211KaaTaaG77AY.40.000011
S211N211SaAtaGt77B.1.1.2790.007848
S211N211NaaTaaC77B.1.617.20.000026
S211N211SaAtaGt77B.1.617.20.000026
S211N211delAAT---77B.1.6210.00062
S211N211delAAT---77P.10.00011
S211N211delAAT---77P.1.150.001626
S211N211RAAtCGt66A.2.50.002994
S211N211YAatTat66AY.1030.000037
S211N211delAAT---66AY.9.20.00022
S211N211delAAT---66B.1.1600.000187
S211N211KaaTaaG46B.1.20.000035
S211N211KaaTaaA26B.1.20.000018
S211N211delAAT---66B.1.2340.000792
S211N211delAAT---66C.370.000696
S211N211delAAT---55A.2.50.002495
S211N211SaAtaGt55A.2.50.002495
S211N211del2aATa--35All0.000001
S211N211del2AAt--t25All0
S211N211IaAtaTt55AY.1170.000423
S211N211delAAT---55AY.200.000194
S211N211NaaTaaC55AY.250.00003
S211N211NaaTaaC55AY.430.000022
S211N211delAAT---55AY.440.00003
S211N211NaaTaaC55AY.50.000103
S211N211delAAT---55B.1.10.000091
S211N211KaaTaaG55B.1.10.000091
S211N211delAAT---55B.1.177.120.000758
S211N211delAAT---55B.1.2430.000348
S211N211DAatGat55B.1.617.20.000019
S211N211SaAtaGt55P.10.000079
S211N211HAatCat44A.2.50.001996
S211N211RAAtCGt44A.2.5.10.019231
S211N211SaAtaGt44AY.1000.000184
S211N211NaaTaaC44AY.1190.000141
S211N211delAAT---44AY.1200.000149
S211N211DAatGat44AY.290.000063
S211N211NaaTaaC44AY.290.000063
S211N211delAAT---44AY.3.10.000341
S211N211delAAT---44AY.4.2.10.000596
S211N211TaAtaCt34AY.430.000013
S211N211TaATaCC14AY.430.000004
S211N211delAAT---44AY.470.000124
S211N211delAAT---44AY.60.000165
S211N211SaAtaGt44AY.98.10.000194
S211N211NaaTaaC44B.1.10.000073
S211N211SaAtaGt44B.1.1.3820.142857
S211N211IaAtaTt44B.1.1.70.000004
S211N211NaaTaaC44B.1.177.820.001909
S211N211NaaTaaC44B.1.3510.000119
S211N211SaAtaGt44B.1.617.10.000516
S211N211TaAtaCt44B.1.617.20.000015
S211N211KaaTaaG44C.360.003643
S211N211NaaTaaC44P.1.120.001936
S211N211HAatCat33A.2.5.10.014423
S211N211SaAtaGt33A.2.5.10.014423
S211N211delAAT---33AY.1000.000138
S211N211IaAtaTt33AY.1030.000019
S211N211NaaTaaC33AY.1100.000338
S211N211YAatTat33AY.200.000117
S211N211delAAT---33AY.250.000018
S211N211KaaTaaA33AY.30.00003
S211N211SaAtaGt33AY.40.000005
S211N211KaaTaaG23AY.430.000009
S211N211KaaTaaA13AY.430.000004
S211N211delAAT---33AY.710.001425
S211N211NaaTaaC33AY.750.000168
S211N211NaaTaaC33AY.9.10.000251
S211N211SaAtaGt33B.1.1.5190.000119
S211N211SaAtaGt33B.1.1.70.000003
S211N211HAatCat33B.1.20.000026
S211N211delAAT---33B.1.3510.000089
S211N211SaAtaGt33B.1.36.290.001552
S211N211NaaTaaC33C.370.000348
S211N211del1AAt-Gt220.111111
S211N211delAAT---22A0.000774
S211N211GAAtGGt22All0
S211N211NaaTaaC22AY.1000.000092
S211N211delAAT---22AY.1020.000053
S211N211delAAT---22AY.1050.001286
S211N211delAAT---22AY.1190.000071
S211N211NaaTaaC22AY.200.000078
S211N211SaAtaGt22AY.200.000078
S211N211delAAT---22AY.230.000139
S211N211delAAT---22AY.240.000862
S211N211NaaTaaC22AY.270.000129
S211N211TaAtaCt22AY.330.000134
S211N211HAatCat22AY.34.10.00102
S211N211NaaTaaC22AY.350.000466
S211N211NaaTaaC22AY.390.000049
S211N211delAAT---22AY.390.000049
S211N211IaAtaTt22AY.40.000003
S211N211DAatGat22AY.40.000003
S211N211delAAT---22AY.4.20.000043
S211N211DAatGat22AY.430.000009
S211N211IaAtaTt22AY.430.000009
S211N211YAatTat22AY.440.000012
S211N211del1aaTaa-12AY.440.000006
S211N211del1Aat-at12AY.440.000006
S211N211YAatTat22AY.46.60.000144
S211N211SaAtaGt22AY.60.000082
S211N211delAAT---22AY.610.00021
S211N211DAatGat22AY.7.20.001119
S211N211delAAT---22AY.850.000854
S211N211NaaTaaC22AY.9.20.000073
S211N211DAatGat22B.10.000018
S211N211SaAtaGt22B.10.000018
S211N211KaaTaaG22B.1.1.3180.000604
S211N211delAAT---22B.1.1.370.000386
S211N211TaAtaCt22B.1.1.70.000002
S211N211KaaTaaG22B.1.1310.017544
S211N211delAAT---22B.1.177.520.003515
S211N211NaaTaaC22B.1.177.730.001133
S211N211delAAT---22B.1.20.000018
S211N211NaaTaaC22B.1.2320.001075
S211N211delAAT---22B.1.2580.000133
S211N211YAatTat22B.1.4700.002809
S211N211SaAtaGt22B.1.5260.000047
S211N211delAAT---22B.1.5750.000607
S211N211TaAtaCt22B.1.5960.000174
S211N211NaaTaaC22B.1.617.10.000258
S211N211YAatTat22B.1.617.20.000008
S211N211NaaTaaC22B.1.6280.000705
S211N211delAAT---22C.110.021277
S211N211NaaTaaC22C.20.032258
S211N211del1aaTaa-22P.1.150.000465
S211N211NaaTaaC22Q.30.00029
S211N211SaAtaGt22R.10.00018
S211N211delAAT---11A.20.000662
S211N211SaAtaGt11A.20.000662
S211N211KaaTaaA11A.2.20.001689
S211N211GAAtGGt11A.2.5.10.004808
S211N211HAatCat11A.2.5.20.001572
S211N211DAatGat11A.2.5.20.001572
S211N211del1AaT-aN11A.290.005319
S211N211delAAT---11AA.10.007246
S211N211FAAtTTt11All0
S211N211LAAtCTt11All0
S211N211VAAtGTt11All0
S211N211XAaTTaA11All0
S211N211CAATTGC11All0
S211N211IaAtaTt11AY.1020.000027
S211N211IaAtaTt11AY.1050.000643
S211N211NaaTaaC11AY.1060.000335
S211N211KaaTaaG11AY.1130.000142
S211N211SaAtaGt11AY.1190.000035
S211N211NaaTaaC11AY.1200.000037
S211N211NaaTaaC11AY.160.00038
S211N211IaAtaTt11AY.200.000039
S211N211TaAtaCt11AY.200.000039
S211N211NaaTaaC11AY.23.10.000417
S211N211SaAtaGt11AY.23.10.000417
S211N211SaAtaGt11AY.240.000431
S211N211YAatTat11AY.250.000006
S211N211IaAtaTt11AY.250.000006
S211N211SaAtaGt11AY.250.000006
S211N211SaAtaGt11AY.260.000028
S211N211delAAT---11AY.270.000065
S211N211NaaTaaC11AY.280.00189
S211N211delAAT---11AY.290.000016
S211N211IaAtaTt11AY.30.00001
S211N211delAAT---11AY.300.000396
S211N211DAatGat11AY.320.000532
S211N211delAAT---11AY.330.000067
S211N211NaaTaaC11AY.360.000148
S211N211delAAT---11AY.380.000499
S211N211SaAtaGt11AY.390.000025
S211N211delAAT---11AY.39.10.00004
S211N211del2aATa--11AY.40.000002
S211N211del1aaTaa-11AY.40.000002
S211N211TaAtaCt11AY.40.000002
S211N211SaAtaGt11AY.4.20.000022
S211N211delAAT---11AY.420.00004
S211N211KaaTaaA11AY.420.00004
S211N211NaaTaaC11AY.420.00004
S211N211CAATTGC11AY.430.000004
S211N211LAAtCTt11AY.430.000004
S211N211GAAtGGt11AY.430.000004
S211N211KaaTaaG11AY.440.000006
S211N211HAatCat11AY.440.000006
S211N211DAatGat11AY.440.000006
S211N211SaAtaGt11AY.460.000104
S211N211delAAT---11AY.460.000104
S211N211delAAT---11AY.46.20.000635
S211N211delAAT---11AY.46.40.000165
S211N211delAAT---11AY.46.60.000072
S211N211KaaTaaG11AY.470.000031
S211N211DAatGat11AY.50.000021
S211N211NaaTaaC11AY.5.10.003759
S211N211NaaTaaC11AY.530.000288
S211N211delAAT---11AY.530.000288
S211N211TaAtaCt11AY.590.00053
S211N211NaaTaaC11AY.650.000533
S211N211HAatCat11AY.670.000464
S211N211TaAtaCt11AY.690.000187
S211N211DAatGat11AY.690.000187
S211N211delAAT---11AY.70.000196
S211N211NaaTaaC11AY.710.000475
S211N211DAatGat11AY.740.000116
S211N211IaAtaTt11AY.780.001541
S211N211IaAtaTt11AY.790.001211
S211N211delAAT---11AY.870.000833
S211N211del2aATa--11AY.9.20.000037
S211N211SaAtaGt11AY.910.00073
S211N211NaaTaaC11AY.920.000287
S211N211KaaTaaG11AY.950.000761
S211N211del1aaTaa-11AY.950.000761
S211N211delAAT---11AY.960.002075
S211N211YAatTat11AY.980.000079
S211N211delAAT---11AY.980.000079
S211N211VAAtGTt11AY.98.10.000048
S211N211delAAT---11AY.98.10.000048
S211N211delAAT---11AY.99.10.001553
S211N211SaAtaGt11AY.99.20.000092
S211N211delAAT---11AZ.20.000821
S211N211NaaTaaC11B0.000128
S211N211delAAT---11B0.000128
S211N211del1aaTaa-11B0.000128
S211N211KaaTaaG11B0.000128
S211N211TaAtaCt11B.10.000009
S211N211HAatCat11B.10.000009
S211N211SaAtaGt11B.1.10.000018
S211N211del2aATa--11B.1.10.000018
S211N211delAAT---11B.1.1.10.000327
S211N211NaaTaaC11B.1.1.10.000327
S211N211SaAtaGt11B.1.1.1330.008475
S211N211DAatGat11B.1.1.1750.076923
S211N211delAAT---11B.1.1.2140.000055
S211N211NaaTaaC11B.1.1.2160.00089
S211N211KaaTaaA11B.1.1.2910.000742
S211N211HAatCat11B.1.1.3060.000438
S211N211delAAT---11B.1.1.3150.008475
S211N211delAAT---11B.1.1.330.000421
S211N211KaaTaaA11B.1.1.330.000421
S211N211delAAT---11B.1.1.390.00051
S211N211delAAT---11B.1.1.3980.003226
S211N211NaaTaaC11B.1.1.4190.007407
S211N211TaAtaCt11B.1.1.4340.000349
S211N211TaATaCA11B.1.1.5190.00004
S211N211delAAT---11B.1.1.5190.00004
S211N211del2AAt--t11B.1.1.70.000001
S211N211HAatCat11B.1.1.70.000001
S211N211delAAT---11B.1.1.700.000341
S211N211delAAT---11B.1.1400.018868
S211N211IaAtaTt11B.1.1580.02381
S211N211SaAtaGt11B.1.1600.000031
S211N211delAAT---11B.1.160.230.004831
S211N211NaaTaaC11B.1.1770.000013
S211N211delAAT---11B.1.177.160.000664
S211N211delAAT---11B.1.177.180.00116
S211N211SaAtaGt11B.1.177.240.001295
S211N211DAatGat11B.1.177.500.004695
S211N211delAAT---11B.1.177.60.000977
S211N211DAatGat11B.1.177.600.000218
S211N211TaAtaCt11B.1.177.600.000218
S211N211delAAT---11B.1.177.620.001192
S211N211delAAT---11B.1.177.690.001484
S211N211NaaTaaC11B.1.177.750.001041
S211N211TaAtaCt11B.1.177.870.000728
S211N211DAatGat11B.1.20.000009
S211N211SaAtaGt11B.1.20.000009
S211N211TaAtaCt11B.1.20.000009
S211N211delAAT---11B.1.2180.005155
S211N211NaaTaaC11B.1.2210.000071
S211N211del1Aat-at11B.1.2430.00007
S211N211TaAtaCt11B.1.2580.000067
S211N211KaaTaaG11B.1.3200.001245
S211N211delAAT---11B.1.351.20.000303
S211N211IaAtaTt11B.1.36.170.000494
S211N211delAAT---11B.1.36.180.00042
S211N211TaAtaCt11B.1.36.80.001
S211N211DAatGat11B.1.3890.001002
S211N211KaaTaaA11B.1.3910.001127
S211N211XAaTTaA11B.1.3910.001127
S211N211YAatTat11B.1.3910.001127
S211N211DAatGat11B.1.3980.002976
S211N211TaAtaCt11B.1.4030.003268
S211N211delAAT---11B.1.4090.000781
S211N211HAatCat11B.1.4290.000024
S211N211IaAtaTt11B.1.4530.003236
S211N211delAAT---11B.1.466.20.000391
S211N211delAAT---11B.1.5170.000427
S211N211DAatGat11B.1.5230.002451
S211N211KaaTaaA11B.1.5230.002451
S211N211delAAT---11B.1.5610.000397
S211N211YAatTat11B.1.5640.000426
S211N211NaaTaaC11B.1.5650.00081
S211N211IaAtaTt11B.1.5670.003333
S211N211del2AAt--t11B.1.5960.000087
S211N211delAAT---11B.1.5990.00365
S211N211NaaTaaC11B.1.6030.010638
S211N211TaAtaCt11B.1.6090.000479
S211N211SaAtaGt11B.1.6090.000479
S211N211delAAT---11B.1.617.10.000129
S211N211HAatCat11B.1.617.10.000129
S211N211del1aaTaa-11B.1.617.20.000004
S211N211delAAT---11B.1.6200.000946
S211N211DAatGat11B.1.6210.000089
S211N211NaaTaaC11B.1.6210.000089
S211N211delAAT---11B.1.621.10.000506
S211N211NaaTaaC11B.1.6300.005236
S211N211delAAT---11B.1.6300.005236
S211N211delAAT---11B.1.6370.000073
S211N211delAAT---11B.1.6380.052632
S211N211NaaTaaC11B.30.000831
S211N211TaAtaCt11B.6.60.000889
S211N211DAatGat11B.6.60.000889
S211N211delAAT---11C.1.20.004255
S211N211DAatGat11D.20.000075
S211N211IaAtaTt11D.30.005917
S211N211DAatGat11P.10.000016
S211N211KaaTaaG11P.10.000016
S211N211FAAtTTt11P.10.000016
S211N211delAAT---11P.1.10.000318
S211N211YAatTat11P.1.140.000048
S211N211SaAtaGt11P.1.160.000374
S211N211DAatGat11R.10.00009
S211N211delAAT---11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.